Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1455540 | AET00786.2 | 87.634 | 186 | 18 | 3 | 1 | 184 | 1 | 183 | 7.41e-90 | 271 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1455540 | sp|Q9SFD8|NFYB9_ARATH | 44.737 | 114 | 59 | 1 | 6 | 115 | 49 | 162 | 6.27e-24 | 97.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1455540 | G7KEG5 | 87.634 | 186 | 18 | 3 | 1 | 184 | 1 | 183 | 3.54e-90 | 271 |
Gene ID | Type | Classification |
---|---|---|
Msa1455540 | TF | NF-YB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1455540 | MtrunA17_Chr5g0446601 | 86.486 | 185 | 20 | 3 | 2 | 184 | 10 | 191 | 2.22e-92 | 267 |
Msa1455540 | MtrunA17_Chr5g0446561 | 80.392 | 102 | 14 | 2 | 84 | 184 | 1 | 97 | 9.74e-30 | 105 |
Msa1455540 | MtrunA17_Chr4g0076321 | 45.946 | 111 | 51 | 3 | 3 | 107 | 7 | 114 | 3.77e-25 | 94.7 |
Msa1455540 | MtrunA17_Chr4g0076381 | 46.296 | 108 | 54 | 1 | 4 | 107 | 46 | 153 | 6.01e-25 | 97.1 |
Msa1455540 | MtrunA17_Chr1g0165041 | 44.144 | 111 | 55 | 1 | 16 | 119 | 6 | 116 | 3.89e-24 | 93.6 |
Msa1455540 | MtrunA17_Chr4g0067091 | 47.312 | 93 | 49 | 0 | 13 | 105 | 19 | 111 | 4.80e-23 | 91.7 |
Msa1455540 | MtrunA17_Chr1g0191981 | 47.826 | 92 | 48 | 0 | 13 | 104 | 1 | 92 | 5.76e-23 | 89.0 |
Msa1455540 | MtrunA17_Chr3g0102351 | 47.778 | 90 | 47 | 0 | 16 | 105 | 27 | 116 | 7.05e-23 | 90.5 |
Msa1455540 | MtrunA17_Chr5g0446491 | 47.778 | 90 | 47 | 0 | 16 | 105 | 23 | 112 | 7.12e-23 | 90.1 |
Msa1455540 | MtrunA17_Chr2g0296321 | 46.154 | 91 | 49 | 0 | 15 | 105 | 65 | 155 | 4.64e-22 | 89.7 |
Msa1455540 | MtrunA17_Chr2g0290491 | 46.667 | 90 | 48 | 0 | 16 | 105 | 17 | 106 | 6.97e-22 | 87.0 |
Msa1455540 | MtrunA17_Chr1g0185911 | 42.268 | 97 | 56 | 0 | 9 | 105 | 22 | 118 | 1.03e-21 | 87.0 |
Msa1455540 | MtrunA17_Chr8g0382931 | 43.956 | 91 | 51 | 0 | 15 | 105 | 27 | 117 | 1.02e-20 | 85.1 |
Msa1455540 | MtrunA17_Chr1g0195851 | 43.434 | 99 | 56 | 0 | 7 | 105 | 27 | 125 | 1.13e-20 | 84.7 |
Msa1455540 | MtrunA17_Chr7g0263601 | 39.806 | 103 | 61 | 1 | 3 | 105 | 14 | 115 | 2.90e-20 | 83.2 |
Msa1455540 | MtrunA17_Chr8g0384451 | 41.758 | 91 | 53 | 0 | 15 | 105 | 39 | 129 | 1.16e-19 | 82.4 |
Msa1455540 | MtrunA17_Chr1g0159291 | 36.986 | 73 | 46 | 0 | 21 | 93 | 7 | 79 | 7.96e-12 | 58.9 |
Msa1455540 | MtrunA17_Chr4g0062271 | 23.232 | 99 | 71 | 1 | 20 | 113 | 15 | 113 | 2.77e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1455540 | AT1G21970.1 | 44.737 | 114 | 59 | 1 | 6 | 115 | 49 | 162 | 6.38e-25 | 97.4 |
Msa1455540 | AT5G47670.2 | 50.000 | 90 | 45 | 0 | 16 | 105 | 29 | 118 | 1.80e-24 | 95.1 |
Msa1455540 | AT5G47670.1 | 50.000 | 90 | 45 | 0 | 16 | 105 | 58 | 147 | 2.48e-24 | 95.5 |
Msa1455540 | AT5G47670.3 | 50.000 | 90 | 45 | 0 | 16 | 105 | 58 | 147 | 2.48e-24 | 95.5 |
Msa1455540 | AT5G47640.1 | 50.000 | 90 | 45 | 0 | 16 | 105 | 27 | 116 | 4.67e-23 | 91.3 |
Msa1455540 | AT2G47810.1 | 44.231 | 104 | 57 | 1 | 1 | 104 | 37 | 139 | 1.57e-22 | 89.0 |
Msa1455540 | AT4G14540.1 | 46.392 | 97 | 49 | 1 | 9 | 105 | 17 | 110 | 2.13e-22 | 88.6 |
Msa1455540 | AT2G37060.2 | 43.137 | 102 | 53 | 2 | 8 | 105 | 23 | 123 | 3.19e-21 | 85.9 |
Msa1455540 | AT2G37060.3 | 43.137 | 102 | 53 | 2 | 8 | 105 | 23 | 123 | 3.19e-21 | 85.9 |
Msa1455540 | AT2G37060.1 | 43.137 | 102 | 53 | 2 | 8 | 105 | 23 | 123 | 3.19e-21 | 85.9 |
Msa1455540 | AT2G38880.2 | 43.000 | 100 | 53 | 1 | 16 | 111 | 21 | 120 | 4.94e-21 | 84.7 |
Msa1455540 | AT2G38880.1 | 43.000 | 100 | 53 | 1 | 16 | 111 | 21 | 120 | 4.94e-21 | 84.7 |
Msa1455540 | AT2G38880.5 | 43.000 | 100 | 53 | 1 | 16 | 111 | 21 | 120 | 4.94e-21 | 84.7 |
Msa1455540 | AT2G38880.3 | 43.000 | 100 | 53 | 1 | 16 | 111 | 21 | 120 | 5.42e-21 | 84.3 |
Msa1455540 | AT1G09030.1 | 44.444 | 90 | 50 | 0 | 19 | 108 | 6 | 95 | 6.01e-21 | 84.3 |
Msa1455540 | AT3G53340.5 | 40.741 | 108 | 59 | 2 | 8 | 111 | 22 | 128 | 1.24e-20 | 84.3 |
Msa1455540 | AT3G53340.1 | 40.741 | 108 | 59 | 2 | 8 | 111 | 22 | 128 | 1.24e-20 | 84.3 |
Msa1455540 | AT2G38880.7 | 42.105 | 95 | 55 | 0 | 16 | 110 | 21 | 115 | 1.91e-20 | 83.2 |
Msa1455540 | AT2G38880.11 | 43.750 | 96 | 50 | 1 | 16 | 107 | 21 | 116 | 1.91e-20 | 83.6 |
Msa1455540 | AT2G38880.8 | 43.750 | 96 | 50 | 1 | 16 | 107 | 21 | 116 | 1.91e-20 | 83.6 |
Msa1455540 | AT3G53340.4 | 43.750 | 96 | 49 | 2 | 8 | 99 | 22 | 116 | 7.04e-20 | 81.3 |
Msa1455540 | AT2G38880.4 | 43.478 | 92 | 48 | 1 | 16 | 103 | 21 | 112 | 8.15e-20 | 80.5 |
Msa1455540 | AT3G53340.3 | 43.750 | 96 | 49 | 2 | 8 | 99 | 22 | 116 | 2.41e-19 | 80.5 |
Msa1455540 | AT3G53340.2 | 43.750 | 96 | 49 | 2 | 8 | 99 | 22 | 116 | 2.41e-19 | 80.5 |
Msa1455540 | AT2G38880.9 | 43.333 | 90 | 51 | 0 | 16 | 105 | 21 | 110 | 1.40e-18 | 78.6 |
Msa1455540 | AT2G38880.10 | 43.333 | 90 | 51 | 0 | 16 | 105 | 21 | 110 | 1.40e-18 | 78.6 |
Msa1455540 | AT2G38880.6 | 43.333 | 90 | 51 | 0 | 16 | 105 | 21 | 110 | 1.40e-18 | 78.6 |
Msa1455540 | AT2G13570.1 | 40.659 | 91 | 54 | 0 | 15 | 105 | 35 | 125 | 9.06e-18 | 77.8 |
Find 48 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTAATTACTATGCACAAAT+TGG | 0.166101 | tig0036297:+6424 | Msa1455540:CDS |
GGGTCAGCAAACACGAAATT+TGG | 0.207485 | tig0036297:-6596 | Msa1455540:intergenic |
ATTATTGCAAGTTAGATTAT+AGG | 0.238725 | tig0036297:+6378 | Msa1455540:CDS |
GGAGGTGGAGGTGGAGGTGG+GGG | 0.276683 | tig0036297:-6524 | Msa1455540:intergenic |
GGTGGAGGTGGAGGTGGAGG+TGG | 0.283304 | tig0036297:-6527 | Msa1455540:intergenic |
TATAATCTAACTTGCAATAA+TGG | 0.324070 | tig0036297:-6376 | Msa1455540:intergenic |
CGATGAAAGCAAGGAAATTA+TGG | 0.324481 | tig0036297:+6307 | Msa1455540:CDS |
GTGGAGGTGGAGGTGGAGGT+GGG | 0.327374 | tig0036297:-6526 | Msa1455540:intergenic |
TGGAGGTGGAGGTGGAGGTG+GGG | 0.345065 | tig0036297:-6525 | Msa1455540:intergenic |
GCTGGTGGAGGTGGAGGTGG+AGG | 0.387641 | tig0036297:-6530 | Msa1455540:intergenic |
GGCAGCGGCGCTGGTGGAGG+TGG | 0.393543 | tig0036297:-6539 | Msa1455540:intergenic |
TGAATTCATTAGCTTTGTTA+CGG | 0.429430 | tig0036297:+6343 | Msa1455540:CDS |
AGCGGCGCTGGTGGAGGTGG+AGG | 0.431125 | tig0036297:-6536 | Msa1455540:intergenic |
TGTGGCAGCGGCGCTGGTGG+AGG | 0.432008 | tig0036297:-6542 | Msa1455540:intergenic |
TTAATTACTATGCACAAATT+GGG | 0.437018 | tig0036297:+6425 | Msa1455540:CDS |
CATAATTTCCTTGCTTTCAT+CGG | 0.441388 | tig0036297:-6306 | Msa1455540:intergenic |
GGCGCTGGTGGAGGTGGAGG+TGG | 0.447225 | tig0036297:-6533 | Msa1455540:intergenic |
GTTTGCTGACCCAACAGAAA+TGG | 0.455645 | tig0036297:+6607 | Msa1455540:CDS |
TCCTGTGGCAGCGGCGCTGG+TGG | 0.456100 | tig0036297:-6545 | None:intergenic |
AAATCCTGTGGCAGCGGCGC+TGG | 0.458062 | tig0036297:-6548 | None:intergenic |
TACTATTGTGGTGATGTTAG+AGG | 0.472434 | tig0036297:+6172 | None:intergenic |
ACACGAAATTTGGATCCAAC+GGG | 0.476879 | tig0036297:-6586 | Msa1455540:intergenic |
CATTAGCTTTGTTACGGCTG+AGG | 0.482313 | tig0036297:+6349 | Msa1455540:CDS |
AAAATTGCACCCATTTCTGT+TGG | 0.484335 | tig0036297:-6617 | Msa1455540:intergenic |
AAATTGCACCCATTTCTGTT+GGG | 0.486823 | tig0036297:-6616 | Msa1455540:intergenic |
TCTTGCACCCTCGAACTAGC+TGG | 0.492382 | tig0036297:-6206 | Msa1455540:intergenic |
ATCTAACTTGCAATAATGGT+TGG | 0.494716 | tig0036297:-6372 | Msa1455540:intergenic |
AGCCTATGCACATTGGCAAT+GGG | 0.499486 | tig0036297:-6248 | Msa1455540:intergenic |
CAGCCTATGCACATTGGCAA+TGG | 0.504717 | tig0036297:-6249 | Msa1455540:intergenic |
TCCACCAGCGCCGCTGCCAC+AGG | 0.505082 | tig0036297:+6544 | Msa1455540:CDS |
TTTCGTGATCGTTCTCGTGT+AGG | 0.522771 | tig0036297:+6491 | Msa1455540:CDS |
AACACGAAATTTGGATCCAA+CGG | 0.532134 | tig0036297:-6587 | Msa1455540:intergenic |
TTTGCTGACCCAACAGAAAT+GGG | 0.535965 | tig0036297:+6608 | Msa1455540:CDS |
GATAGAGAACTTGGTGGTGG+TGG | 0.540606 | tig0036297:+6656 | Msa1455540:CDS |
TTCCCATTGCCAATGTGCAT+AGG | 0.544086 | tig0036297:+6246 | Msa1455540:CDS |
GATGATGATGATAGAGAACT+TGG | 0.547404 | tig0036297:+6647 | Msa1455540:CDS |
GAGTGCAACCAGCTAGTTCG+AGG | 0.550758 | tig0036297:+6198 | Msa1455540:CDS |
ATGCACATTGGCAATGGGAA+AGG | 0.554205 | tig0036297:-6243 | Msa1455540:intergenic |
TCAAGCTCATAATTTCCCGT+TGG | 0.560346 | tig0036297:+6571 | Msa1455540:CDS |
GCTTGAAAATCCTGTGGCAG+CGG | 0.563556 | tig0036297:-6554 | Msa1455540:intergenic |
GAACTTGGTGGTGGTGGTGA+TGG | 0.569523 | tig0036297:+6662 | Msa1455540:CDS |
TTTCATCAGCCTATGCACAT+TGG | 0.570566 | tig0036297:-6255 | Msa1455540:intergenic |
GATGATGATAGAGAACTTGG+TGG | 0.615654 | tig0036297:+6650 | Msa1455540:CDS |
GGTGATGGCAACTCAAGTGA+TGG | 0.623580 | tig0036297:+6677 | Msa1455540:CDS |
ATTGTGGTGATGTTAGAGGA+TGG | 0.634454 | tig0036297:+6176 | None:intergenic |
GATGATAGAGAACTTGGTGG+TGG | 0.661700 | tig0036297:+6653 | Msa1455540:CDS |
TTATGAGCTTGAAAATCCTG+TGG | 0.676989 | tig0036297:-6560 | Msa1455540:intergenic |
AGTGCAACCAGCTAGTTCGA+GGG | 0.693334 | tig0036297:+6199 | Msa1455540:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATAATCTAACTTGCAATAA+TGG | - | tig0036297:6379-6398 | Msa1455540:intergenic | 20.0% |
!! | ATTATTGCAAGTTAGATTAT+AGG | + | tig0036297:6378-6397 | Msa1455540:CDS | 20.0% |
!! | TTAATTACTATGCACAAATT+GGG | + | tig0036297:6425-6444 | Msa1455540:CDS | 20.0% |
!!! | TGAATTCATTAGCTTTGTTA+CGG | + | tig0036297:6343-6362 | Msa1455540:CDS | 25.0% |
! | GTTAATTACTATGCACAAAT+TGG | + | tig0036297:6424-6443 | Msa1455540:CDS | 25.0% |
AAAAATAACCGATGAAAGCA+AGG | + | tig0036297:6298-6317 | Msa1455540:CDS | 30.0% | |
CATAATTTCCTTGCTTTCAT+CGG | - | tig0036297:6309-6328 | Msa1455540:intergenic | 30.0% | |
! | ATCTAACTTGCAATAATGGT+TGG | - | tig0036297:6375-6394 | Msa1455540:intergenic | 30.0% |
!!! | TCGGTTATTTTTGCATGTCT+AGG | - | tig0036297:6290-6309 | Msa1455540:intergenic | 35.0% |
CGATGAAAGCAAGGAAATTA+TGG | + | tig0036297:6307-6326 | Msa1455540:CDS | 35.0% | |
TTATGAGCTTGAAAATCCTG+TGG | - | tig0036297:6563-6582 | Msa1455540:intergenic | 35.0% | |
AACACGAAATTTGGATCCAA+CGG | - | tig0036297:6590-6609 | Msa1455540:intergenic | 35.0% | |
AAATTGCACCCATTTCTGTT+GGG | - | tig0036297:6619-6638 | Msa1455540:intergenic | 35.0% | |
AAAATTGCACCCATTTCTGT+TGG | - | tig0036297:6620-6639 | Msa1455540:intergenic | 35.0% | |
! | ACAGAAATGGGTGCAATTTT+AGG | + | tig0036297:6620-6639 | Msa1455540:CDS | 35.0% |
! | GATGATGATGATAGAGAACT+TGG | + | tig0036297:6647-6666 | Msa1455540:CDS | 35.0% |
TTTCATCAGCCTATGCACAT+TGG | - | tig0036297:6258-6277 | Msa1455540:intergenic | 40.0% | |
! | AAAAAGTTGGATGTAGCGGA+GGG | - | tig0036297:6474-6493 | Msa1455540:intergenic | 40.0% |
CACGAAAAAGTTGGATGTAG+CGG | - | tig0036297:6478-6497 | Msa1455540:intergenic | 40.0% | |
GAGAACGATCACGAAAAAGT+TGG | - | tig0036297:6487-6506 | Msa1455540:intergenic | 40.0% | |
TCAAGCTCATAATTTCCCGT+TGG | + | tig0036297:6571-6590 | Msa1455540:CDS | 40.0% | |
ACACGAAATTTGGATCCAAC+GGG | - | tig0036297:6589-6608 | Msa1455540:intergenic | 40.0% | |
TTTGCTGACCCAACAGAAAT+GGG | + | tig0036297:6608-6627 | Msa1455540:CDS | 40.0% | |
GATGATGATAGAGAACTTGG+TGG | + | tig0036297:6650-6669 | Msa1455540:CDS | 40.0% | |
ATGCACATTGGCAATGGGAA+AGG | - | tig0036297:6246-6265 | Msa1455540:intergenic | 45.0% | |
TTCCCATTGCCAATGTGCAT+AGG | + | tig0036297:6246-6265 | Msa1455540:CDS | 45.0% | |
AGCCTATGCACATTGGCAAT+GGG | - | tig0036297:6251-6270 | Msa1455540:intergenic | 45.0% | |
!! | CATTAGCTTTGTTACGGCTG+AGG | + | tig0036297:6349-6368 | Msa1455540:CDS | 45.0% |
GAAAAAGTTGGATGTAGCGG+AGG | - | tig0036297:6475-6494 | Msa1455540:intergenic | 45.0% | |
TTTCGTGATCGTTCTCGTGT+AGG | + | tig0036297:6491-6510 | Msa1455540:CDS | 45.0% | |
GGGTCAGCAAACACGAAATT+TGG | - | tig0036297:6599-6618 | Msa1455540:intergenic | 45.0% | |
! | GTTTGCTGACCCAACAGAAA+TGG | + | tig0036297:6607-6626 | Msa1455540:CDS | 45.0% |
! | GATGATAGAGAACTTGGTGG+TGG | + | tig0036297:6653-6672 | Msa1455540:CDS | 45.0% |
AGTGCAACCAGCTAGTTCGA+GGG | + | tig0036297:6199-6218 | Msa1455540:CDS | 50.0% | |
CAGCCTATGCACATTGGCAA+TGG | - | tig0036297:6252-6271 | Msa1455540:intergenic | 50.0% | |
GCTTGAAAATCCTGTGGCAG+CGG | - | tig0036297:6557-6576 | Msa1455540:intergenic | 50.0% | |
!! | GATAGAGAACTTGGTGGTGG+TGG | + | tig0036297:6656-6675 | Msa1455540:CDS | 50.0% |
! | GGTGATGGCAACTCAAGTGA+TGG | + | tig0036297:6677-6696 | Msa1455540:CDS | 50.0% |
GAGTGCAACCAGCTAGTTCG+AGG | + | tig0036297:6198-6217 | Msa1455540:CDS | 55.0% | |
TCTTGCACCCTCGAACTAGC+TGG | - | tig0036297:6209-6228 | Msa1455540:intergenic | 55.0% | |
!! | GAACTTGGTGGTGGTGGTGA+TGG | + | tig0036297:6662-6681 | Msa1455540:CDS | 55.0% |
TGGAGGTGGAGGTGGAGGTG+GGG | - | tig0036297:6528-6547 | Msa1455540:intergenic | 65.0% | |
GTGGAGGTGGAGGTGGAGGT+GGG | - | tig0036297:6529-6548 | Msa1455540:intergenic | 65.0% | |
AAATCCTGTGGCAGCGGCGC+TGG | - | tig0036297:6551-6570 | Msa1455540:intergenic | 65.0% | |
GGAGGTGGAGGTGGAGGTGG+GGG | - | tig0036297:6527-6546 | Msa1455540:intergenic | 70.0% | |
GGTGGAGGTGGAGGTGGAGG+TGG | - | tig0036297:6530-6549 | Msa1455540:intergenic | 70.0% | |
GCTGGTGGAGGTGGAGGTGG+AGG | - | tig0036297:6533-6552 | Msa1455540:intergenic | 70.0% | |
!! | GGCGCTGGTGGAGGTGGAGG+TGG | - | tig0036297:6536-6555 | Msa1455540:intergenic | 75.0% |
!! | AGCGGCGCTGGTGGAGGTGG+AGG | - | tig0036297:6539-6558 | Msa1455540:intergenic | 75.0% |
!! | TGTGGCAGCGGCGCTGGTGG+AGG | - | tig0036297:6545-6564 | Msa1455540:intergenic | 75.0% |
TCCACCAGCGCCGCTGCCAC+AGG | + | tig0036297:6544-6563 | Msa1455540:CDS | 75.0% | |
! | TCCTGTGGCAGCGGCGCTGG+TGG | - | tig0036297:6548-6567 | Msa1455540:intergenic | 75.0% |
!!! | GGCAGCGGCGCTGGTGGAGG+TGG | - | tig0036297:6542-6561 | Msa1455540:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0036297 | gene | 6185 | 6739 | 6185 | ID=Msa1455540;Name=Msa1455540 |
tig0036297 | mRNA | 6185 | 6739 | 6185 | ID=Msa1455540-mRNA-1;Parent=Msa1455540;Name=Msa1455540-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|184 |
tig0036297 | exon | 6185 | 6739 | 6185 | ID=Msa1455540-mRNA-1:exon:20311;Parent=Msa1455540-mRNA-1 |
tig0036297 | CDS | 6185 | 6739 | 6185 | ID=Msa1455540-mRNA-1:cds;Parent=Msa1455540-mRNA-1 |
Gene Sequence |
Protein sequence |