Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455670 | XP_013470179.1 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 3.81e-163 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455670 | sp|Q9M886|LBD41_ARATH | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.75e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455670 | G7ZZB8 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 1.82e-163 | 460 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1455670 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455670 | MtrunA17_Chr6g0469271 | 93.939 | 231 | 14 | 0 | 1 | 231 | 1 | 231 | 1.40e-164 | 453 |
| Msa1455670 | MtrunA17_Chr6g0470631 | 90.476 | 231 | 22 | 0 | 1 | 231 | 1 | 231 | 1.86e-158 | 438 |
| Msa1455670 | MtrunA17_Chr6g0470651 | 88.745 | 231 | 26 | 0 | 1 | 231 | 1 | 231 | 2.34e-156 | 432 |
| Msa1455670 | MtrunA17_Chr1g0209841 | 91.342 | 231 | 10 | 1 | 1 | 231 | 1 | 221 | 2.44e-156 | 432 |
| Msa1455670 | MtrunA17_Chr6g0457431 | 55.422 | 166 | 56 | 6 | 1 | 160 | 1 | 154 | 4.58e-60 | 186 |
| Msa1455670 | MtrunA17_Chr7g0215281 | 44.053 | 227 | 109 | 7 | 1 | 223 | 1 | 213 | 8.42e-56 | 180 |
| Msa1455670 | MtrunA17_Chr4g0053911 | 56.303 | 119 | 48 | 2 | 3 | 119 | 1 | 117 | 1.65e-46 | 154 |
| Msa1455670 | MtrunA17_Chr5g0401401 | 44.970 | 169 | 82 | 5 | 3 | 165 | 1 | 164 | 5.49e-45 | 150 |
| Msa1455670 | MtrunA17_Chr1g0207471 | 44.882 | 127 | 63 | 2 | 3 | 124 | 1 | 125 | 7.99e-36 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455670 | AT3G02550.1 | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.80e-53 | 172 |
| Msa1455670 | AT1G68510.1 | 55.102 | 147 | 54 | 3 | 1 | 145 | 1 | 137 | 3.07e-53 | 171 |
| Msa1455670 | AT1G67100.1 | 54.861 | 144 | 57 | 3 | 1 | 144 | 1 | 136 | 5.96e-50 | 163 |
| Msa1455670 | AT3G49940.1 | 53.659 | 123 | 55 | 1 | 3 | 125 | 1 | 121 | 1.41e-45 | 152 |
| Msa1455670 | AT5G67420.2 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
| Msa1455670 | AT5G67420.1 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
| Msa1455670 | AT4G37540.1 | 57.798 | 109 | 44 | 1 | 3 | 111 | 1 | 107 | 1.50e-43 | 147 |
Find 62 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCATGCCCTTGGGATTC+AGG | 0.157225 | tig0036419:+15016 | None:intergenic |
| ATGGGGCGCTTGGCTTATTT+TGG | 0.165756 | tig0036419:-14548 | Msa1455670:CDS |
| AAGAATACCAACATGGAAAT+TGG | 0.166066 | tig0036419:-14249 | Msa1455670:CDS |
| ACCGGTTCGGCCATAAAATT+TGG | 0.172606 | tig0036419:+14982 | None:intergenic |
| ATGGCGTATATCATAGGTTT+TGG | 0.254539 | tig0036419:+14395 | None:intergenic |
| TGCTGAGAATCAAGTGAATT+TGG | 0.279066 | tig0036419:-14184 | Msa1455670:CDS |
| CCATGTTGGTATTCTTCAAA+AGG | 0.367139 | tig0036419:+14256 | None:intergenic |
| AGAATACCAACATGGAAATT+GGG | 0.374565 | tig0036419:-14248 | Msa1455670:CDS |
| TGCCACATGGCGTATATCAT+AGG | 0.386203 | tig0036419:+14389 | None:intergenic |
| CTTTGATTGCCAATCAACTA+AGG | 0.392207 | tig0036419:-14148 | Msa1455670:CDS |
| CATAAAATTTGGCAAGGAAG+AGG | 0.404166 | tig0036419:+14993 | None:intergenic |
| GACTGAACCAACTCGTGGCT+TGG | 0.415502 | tig0036419:+14302 | None:intergenic |
| ACTGAACCAACTCGTGGCTT+GGG | 0.424285 | tig0036419:+14303 | None:intergenic |
| GTGAATTTGGAACTCACTCT+TGG | 0.424885 | tig0036419:-14171 | Msa1455670:CDS |
| GGAAGAGGGTGGCATGCCCT+TGG | 0.443110 | tig0036419:+15008 | None:intergenic |
| GCAACTGATCCACTCAAGGC+AGG | 0.443950 | tig0036419:+15039 | None:intergenic |
| TGGCATGCCCTTGGGATTCA+GGG | 0.444879 | tig0036419:+15017 | None:intergenic |
| AAAACTCAATTCAAAAGAGC+TGG | 0.446487 | tig0036419:-14339 | Msa1455670:CDS |
| ATTGATGGGCAGACATCATC+AGG | 0.455052 | tig0036419:-14447 | Msa1455670:CDS |
| GCAGTTGAAGCTGTGCTGAC+TGG | 0.456964 | tig0036419:-14498 | Msa1455670:CDS |
| AGATTGGTGAATCCCACATA+TGG | 0.458590 | tig0036419:-14567 | Msa1455670:CDS |
| TAAGCCAAGCGCCCCATATG+TGG | 0.471835 | tig0036419:+14554 | None:intergenic |
| CATGTTGGTATTCTTCAAAA+GGG | 0.477135 | tig0036419:+14257 | None:intergenic |
| GAAGAGGGTGGCATGCCCTT+GGG | 0.479104 | tig0036419:+15009 | None:intergenic |
| GGAGATTGAGCAAACCGGTT+CGG | 0.494518 | tig0036419:+14969 | None:intergenic |
| AATCATCACTACAACCTTTG+CGG | 0.504650 | tig0036419:+15074 | None:intergenic |
| GATTGGTGAATCCCACATAT+GGG | 0.508471 | tig0036419:-14566 | Msa1455670:CDS |
| GATATACGCCATGTGGCAAA+AGG | 0.516720 | tig0036419:-14384 | Msa1455670:CDS |
| AATCCCACATATGGGGCGCT+TGG | 0.518707 | tig0036419:-14558 | Msa1455670:CDS |
| GGTGAGGAGATTGAGCAAAC+CGG | 0.524508 | tig0036419:+14964 | None:intergenic |
| TCATCAAGCCCTGCCTTGAG+TGG | 0.538225 | tig0036419:-15048 | Msa1455670:CDS |
| GTACCAATGTGGACATCAAA+GGG | 0.546635 | tig0036419:-14362 | Msa1455670:CDS |
| TTTCCCTTTGATGTCCACAT+TGG | 0.551024 | tig0036419:+14359 | None:intergenic |
| GGTACCAATGTGGACATCAA+AGG | 0.551224 | tig0036419:-14363 | Msa1455670:CDS |
| GTACGAGGCAGCTGGTAGAT+TGG | 0.560594 | tig0036419:-14583 | Msa1455670:CDS |
| GAATACCAACATGGAAATTG+GGG | 0.561319 | tig0036419:-14247 | Msa1455670:CDS |
| CTGAAGCCCAAGCCACGAGT+TGG | 0.576033 | tig0036419:-14309 | Msa1455670:CDS |
| AGTCTCCCCAATTTCCATGT+TGG | 0.576332 | tig0036419:+14242 | None:intergenic |
| ATAAAATTTGGCAAGGAAGA+GGG | 0.578936 | tig0036419:+14994 | None:intergenic |
| TTCGGCCATAAAATTTGGCA+AGG | 0.579687 | tig0036419:+14987 | None:intergenic |
| TAATGAAGTTGAGTTGCAAT+GGG | 0.583194 | tig0036419:-15108 | Msa1455670:CDS |
| TTTGATTGCCAATCAACTAA+GGG | 0.586746 | tig0036419:-14147 | Msa1455670:CDS |
| AAGCCAAGCGCCCCATATGT+GGG | 0.589682 | tig0036419:+14555 | None:intergenic |
| AAACTCAATTCAAAAGAGCT+GGG | 0.590181 | tig0036419:-14338 | Msa1455670:CDS |
| CAACTGATCCACTCAAGGCA+GGG | 0.595554 | tig0036419:+15040 | None:intergenic |
| ATCAGTTGCCCTGAATCCCA+AGG | 0.599742 | tig0036419:-15025 | Msa1455670:CDS |
| ATAATGAAGTTGAGTTGCAA+TGG | 0.608858 | tig0036419:-15109 | Msa1455670:CDS |
| TCATTGTTGTACGAGGCAGC+TGG | 0.614180 | tig0036419:-14591 | Msa1455670:CDS |
| ACGAGTTGGTTCAGTCGACT+CGG | 0.622355 | tig0036419:-14295 | Msa1455670:CDS |
| CAGGGCAACTGATCCACTCA+AGG | 0.625744 | tig0036419:+15035 | None:intergenic |
| GGGTGTCGTGTGCTCCGCAA+AGG | 0.627575 | tig0036419:-15088 | Msa1455670:CDS |
| ATTGGTGAATCCCACATATG+GGG | 0.640018 | tig0036419:-14565 | Msa1455670:CDS |
| TTTGATTGGTAGCATTGGTG+AGG | 0.643249 | tig0036419:+14948 | None:intergenic |
| AAATTGGGGAGACTTCATCA+AGG | 0.644743 | tig0036419:-14233 | Msa1455670:CDS |
| AATTGGGGAGACTTCATCAA+GGG | 0.644822 | tig0036419:-14232 | Msa1455670:CDS |
| AATCAAAATCATAATCCACC+AGG | 0.664735 | tig0036419:-14932 | Msa1455670:intron |
| TCAGTTGCCCTGAATCCCAA+GGG | 0.669183 | tig0036419:-15024 | Msa1455670:CDS |
| GAGTCGACTGAACCAACTCG+TGG | 0.679210 | tig0036419:+14297 | None:intergenic |
| AACCTATGATATACGCCATG+TGG | 0.679816 | tig0036419:-14391 | Msa1455670:CDS |
| AAATTTGGCAAGGAAGAGGG+TGG | 0.680062 | tig0036419:+14997 | None:intergenic |
| GTTTAAATCATTGTTGTACG+AGG | 0.684324 | tig0036419:-14598 | Msa1455670:CDS |
| TGTGGCAAAAGGTACCAATG+TGG | 0.731996 | tig0036419:-14373 | Msa1455670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATCTAACACTTAAATGA+TGG | - | tig0036419:14343-14362 | Msa1455670:CDS | 20.0% |
| !!! | GTTTAATTTATGATCCATAA+CGG | + | tig0036419:14500-14519 | None:intergenic | 20.0% |
| !!! | GAATCTATGAAAAGATTTTA+TGG | + | tig0036419:14541-14560 | None:intergenic | 20.0% |
| !! | ATAATCTAACACTTAAATGA+TGG | - | tig0036419:14343-14362 | Msa1455670:CDS | 20.0% |
| !!! | GTTTAATTTATGATCCATAA+CGG | + | tig0036419:14500-14519 | None:intergenic | 20.0% |
| !!! | GAATCTATGAAAAGATTTTA+TGG | + | tig0036419:14541-14560 | None:intergenic | 20.0% |
| !! | ACAGTTTTACAATGATTGAT+GGG | - | tig0036419:14770-14789 | Msa1455670:intron | 25.0% |
| !! | ACAGTTTTACAATGATTGAT+GGG | - | tig0036419:14770-14789 | Msa1455670:intron | 25.0% |
| ATAAAATTTGGCAAGGAAGA+GGG | + | tig0036419:14240-14259 | None:intergenic | 30.0% | |
| !!! | ATGATTTTGATTGGTAGCAT+TGG | + | tig0036419:14291-14310 | None:intergenic | 30.0% |
| !!! | TGGTGGATTATGATTTTGAT+TGG | + | tig0036419:14300-14319 | None:intergenic | 30.0% |
| AATCAAAATCATAATCCACC+AGG | - | tig0036419:14299-14318 | Msa1455670:CDS | 30.0% | |
| ! | TCTAACACTTAAATGATGGA+TGG | - | tig0036419:14347-14366 | Msa1455670:CDS | 30.0% |
| ! | CAATTTAAAACCATGATGGA+TGG | + | tig0036419:14391-14410 | None:intergenic | 30.0% |
| !!! | TCCATCATGGTTTTAAATTG+TGG | - | tig0036419:14391-14410 | Msa1455670:CDS | 30.0% |
| ! | ACCACAATTTAAAACCATGA+TGG | + | tig0036419:14395-14414 | None:intergenic | 30.0% |
| TAAAAAAGTTTGTCGTGTAG+CGG | + | tig0036419:14432-14451 | None:intergenic | 30.0% | |
| ATGGAACATAAATGAGACAT+AGG | + | tig0036419:14522-14541 | None:intergenic | 30.0% | |
| GTTTAAATCATTGTTGTACG+AGG | - | tig0036419:14633-14652 | Msa1455670:intron | 30.0% | |
| ! | GACAGTTTTACAATGATTGA+TGG | - | tig0036419:14769-14788 | Msa1455670:intron | 30.0% |
| AAAACTCAATTCAAAAGAGC+TGG | - | tig0036419:14892-14911 | Msa1455670:intron | 30.0% | |
| AAACTCAATTCAAAAGAGCT+GGG | - | tig0036419:14893-14912 | Msa1455670:intron | 30.0% | |
| CATGTTGGTATTCTTCAAAA+GGG | + | tig0036419:14977-14996 | None:intergenic | 30.0% | |
| AAGAATACCAACATGGAAAT+TGG | - | tig0036419:14982-15001 | Msa1455670:CDS | 30.0% | |
| AGAATACCAACATGGAAATT+GGG | - | tig0036419:14983-15002 | Msa1455670:CDS | 30.0% | |
| TTTGATTGCCAATCAACTAA+GGG | - | tig0036419:15084-15103 | Msa1455670:CDS | 30.0% | |
| ATAAAATTTGGCAAGGAAGA+GGG | + | tig0036419:14240-14259 | None:intergenic | 30.0% | |
| !!! | ATGATTTTGATTGGTAGCAT+TGG | + | tig0036419:14291-14310 | None:intergenic | 30.0% |
| !!! | TGGTGGATTATGATTTTGAT+TGG | + | tig0036419:14300-14319 | None:intergenic | 30.0% |
| AATCAAAATCATAATCCACC+AGG | - | tig0036419:14299-14318 | Msa1455670:CDS | 30.0% | |
| ! | TCTAACACTTAAATGATGGA+TGG | - | tig0036419:14347-14366 | Msa1455670:CDS | 30.0% |
| ! | CAATTTAAAACCATGATGGA+TGG | + | tig0036419:14391-14410 | None:intergenic | 30.0% |
| !!! | TCCATCATGGTTTTAAATTG+TGG | - | tig0036419:14391-14410 | Msa1455670:CDS | 30.0% |
| ! | ACCACAATTTAAAACCATGA+TGG | + | tig0036419:14395-14414 | None:intergenic | 30.0% |
| TAAAAAAGTTTGTCGTGTAG+CGG | + | tig0036419:14432-14451 | None:intergenic | 30.0% | |
| ATGGAACATAAATGAGACAT+AGG | + | tig0036419:14522-14541 | None:intergenic | 30.0% | |
| GTTTAAATCATTGTTGTACG+AGG | - | tig0036419:14633-14652 | Msa1455670:intron | 30.0% | |
| ! | GACAGTTTTACAATGATTGA+TGG | - | tig0036419:14769-14788 | Msa1455670:intron | 30.0% |
| AAAACTCAATTCAAAAGAGC+TGG | - | tig0036419:14892-14911 | Msa1455670:intron | 30.0% | |
| AAACTCAATTCAAAAGAGCT+GGG | - | tig0036419:14893-14912 | Msa1455670:intron | 30.0% | |
| CATGTTGGTATTCTTCAAAA+GGG | + | tig0036419:14977-14996 | None:intergenic | 30.0% | |
| AAGAATACCAACATGGAAAT+TGG | - | tig0036419:14982-15001 | Msa1455670:CDS | 30.0% | |
| AGAATACCAACATGGAAATT+GGG | - | tig0036419:14983-15002 | Msa1455670:CDS | 30.0% | |
| TTTGATTGCCAATCAACTAA+GGG | - | tig0036419:15084-15103 | Msa1455670:CDS | 30.0% | |
| AATCATCACTACAACCTTTG+CGG | + | tig0036419:14160-14179 | None:intergenic | 35.0% | |
| CATAAAATTTGGCAAGGAAG+AGG | + | tig0036419:14241-14260 | None:intergenic | 35.0% | |
| ! | CTCTTCCTTGCCAAATTTTA+TGG | - | tig0036419:14239-14258 | Msa1455670:CDS | 35.0% |
| ATCAATGATTCCATCCATCA+TGG | - | tig0036419:14378-14397 | Msa1455670:CDS | 35.0% | |
| TATGATCCATAACGGTATTG+CGG | + | tig0036419:14492-14511 | None:intergenic | 35.0% | |
| ! | TGGCGTATATCATAGGTTTT+GGG | + | tig0036419:14838-14857 | None:intergenic | 35.0% |
| ! | ATGGCGTATATCATAGGTTT+TGG | + | tig0036419:14839-14858 | None:intergenic | 35.0% |
| CCATGTTGGTATTCTTCAAA+AGG | + | tig0036419:14978-14997 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATACCAACA+TGG | - | tig0036419:14975-14994 | Msa1455670:CDS | 35.0% |
| GAATACCAACATGGAAATTG+GGG | - | tig0036419:14984-15003 | Msa1455670:CDS | 35.0% | |
| TGCTGAGAATCAAGTGAATT+TGG | - | tig0036419:15047-15066 | Msa1455670:CDS | 35.0% | |
| CTTTGATTGCCAATCAACTA+AGG | - | tig0036419:15083-15102 | Msa1455670:CDS | 35.0% | |
| ! | TTTTCTTGCCCTTAGTTGAT+TGG | + | tig0036419:15095-15114 | None:intergenic | 35.0% |
| AATCATCACTACAACCTTTG+CGG | + | tig0036419:14160-14179 | None:intergenic | 35.0% | |
| CATAAAATTTGGCAAGGAAG+AGG | + | tig0036419:14241-14260 | None:intergenic | 35.0% | |
| ! | CTCTTCCTTGCCAAATTTTA+TGG | - | tig0036419:14239-14258 | Msa1455670:CDS | 35.0% |
| ATCAATGATTCCATCCATCA+TGG | - | tig0036419:14378-14397 | Msa1455670:CDS | 35.0% | |
| TATGATCCATAACGGTATTG+CGG | + | tig0036419:14492-14511 | None:intergenic | 35.0% | |
| ! | TGGCGTATATCATAGGTTTT+GGG | + | tig0036419:14838-14857 | None:intergenic | 35.0% |
| ! | ATGGCGTATATCATAGGTTT+TGG | + | tig0036419:14839-14858 | None:intergenic | 35.0% |
| CCATGTTGGTATTCTTCAAA+AGG | + | tig0036419:14978-14997 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATACCAACA+TGG | - | tig0036419:14975-14994 | Msa1455670:CDS | 35.0% |
| GAATACCAACATGGAAATTG+GGG | - | tig0036419:14984-15003 | Msa1455670:CDS | 35.0% | |
| TGCTGAGAATCAAGTGAATT+TGG | - | tig0036419:15047-15066 | Msa1455670:CDS | 35.0% | |
| CTTTGATTGCCAATCAACTA+AGG | - | tig0036419:15083-15102 | Msa1455670:CDS | 35.0% | |
| ! | TTTTCTTGCCCTTAGTTGAT+TGG | + | tig0036419:15095-15114 | None:intergenic | 35.0% |
| TTCGGCCATAAAATTTGGCA+AGG | + | tig0036419:14247-14266 | None:intergenic | 40.0% | |
| !! | TTTGATTGGTAGCATTGGTG+AGG | + | tig0036419:14286-14305 | None:intergenic | 40.0% |
| !! | GTGACCAACTTAAGTTGATG+CGG | - | tig0036419:14466-14485 | Msa1455670:CDS | 40.0% |
| AGATTGGTGAATCCCACATA+TGG | - | tig0036419:14664-14683 | Msa1455670:intron | 40.0% | |
| GATTGGTGAATCCCACATAT+GGG | - | tig0036419:14665-14684 | Msa1455670:intron | 40.0% | |
| ATTGGTGAATCCCACATATG+GGG | - | tig0036419:14666-14685 | Msa1455670:intron | 40.0% | |
| !!! | GCTTATTTTGGACAGCGAAT+TGG | - | tig0036419:14695-14714 | Msa1455670:intron | 40.0% |
| ! | GGCGTATATCATAGGTTTTG+GGG | + | tig0036419:14837-14856 | None:intergenic | 40.0% |
| AACCTATGATATACGCCATG+TGG | - | tig0036419:14840-14859 | Msa1455670:intron | 40.0% | |
| GTACCAATGTGGACATCAAA+GGG | - | tig0036419:14869-14888 | Msa1455670:intron | 40.0% | |
| TTTCCCTTTGATGTCCACAT+TGG | + | tig0036419:14875-14894 | None:intergenic | 40.0% | |
| AAATTGGGGAGACTTCATCA+AGG | - | tig0036419:14998-15017 | Msa1455670:CDS | 40.0% | |
| AATTGGGGAGACTTCATCAA+GGG | - | tig0036419:14999-15018 | Msa1455670:CDS | 40.0% | |
| ! | GTGAATTTGGAACTCACTCT+TGG | - | tig0036419:15060-15079 | Msa1455670:CDS | 40.0% |
| TTCGGCCATAAAATTTGGCA+AGG | + | tig0036419:14247-14266 | None:intergenic | 40.0% | |
| !! | TTTGATTGGTAGCATTGGTG+AGG | + | tig0036419:14286-14305 | None:intergenic | 40.0% |
| !! | GTGACCAACTTAAGTTGATG+CGG | - | tig0036419:14466-14485 | Msa1455670:CDS | 40.0% |
| AGATTGGTGAATCCCACATA+TGG | - | tig0036419:14664-14683 | Msa1455670:intron | 40.0% | |
| GATTGGTGAATCCCACATAT+GGG | - | tig0036419:14665-14684 | Msa1455670:intron | 40.0% | |
| ATTGGTGAATCCCACATATG+GGG | - | tig0036419:14666-14685 | Msa1455670:intron | 40.0% | |
| !!! | GCTTATTTTGGACAGCGAAT+TGG | - | tig0036419:14695-14714 | Msa1455670:intron | 40.0% |
| ! | GGCGTATATCATAGGTTTTG+GGG | + | tig0036419:14837-14856 | None:intergenic | 40.0% |
| AACCTATGATATACGCCATG+TGG | - | tig0036419:14840-14859 | Msa1455670:intron | 40.0% | |
| GTACCAATGTGGACATCAAA+GGG | - | tig0036419:14869-14888 | Msa1455670:intron | 40.0% | |
| TTTCCCTTTGATGTCCACAT+TGG | + | tig0036419:14875-14894 | None:intergenic | 40.0% | |
| AAATTGGGGAGACTTCATCA+AGG | - | tig0036419:14998-15017 | Msa1455670:CDS | 40.0% | |
| AATTGGGGAGACTTCATCAA+GGG | - | tig0036419:14999-15018 | Msa1455670:CDS | 40.0% | |
| ! | GTGAATTTGGAACTCACTCT+TGG | - | tig0036419:15060-15079 | Msa1455670:CDS | 40.0% |
| AAATTTGGCAAGGAAGAGGG+TGG | + | tig0036419:14237-14256 | None:intergenic | 45.0% | |
| ! | GCCAAATTTTATGGCCGAAC+CGG | - | tig0036419:14248-14267 | Msa1455670:CDS | 45.0% |
| !! | ACCGGTTCGGCCATAAAATT+TGG | + | tig0036419:14252-14271 | None:intergenic | 45.0% |
| AGTGAACATAGCTAGCTACC+TGG | + | tig0036419:14320-14339 | None:intergenic | 45.0% | |
| ! | ATTGATGGGCAGACATCATC+AGG | - | tig0036419:14784-14803 | Msa1455670:intron | 45.0% |
| TGCCACATGGCGTATATCAT+AGG | + | tig0036419:14845-14864 | None:intergenic | 45.0% | |
| GATATACGCCATGTGGCAAA+AGG | - | tig0036419:14847-14866 | Msa1455670:intron | 45.0% | |
| ! | CATTGGTACCTTTTGCCACA+TGG | + | tig0036419:14858-14877 | None:intergenic | 45.0% |
| !! | TGTGGCAAAAGGTACCAATG+TGG | - | tig0036419:14858-14877 | Msa1455670:intron | 45.0% |
| GGTACCAATGTGGACATCAA+AGG | - | tig0036419:14868-14887 | Msa1455670:intron | 45.0% | |
| AGTCTCCCCAATTTCCATGT+TGG | + | tig0036419:14992-15011 | None:intergenic | 45.0% | |
| AAATTTGGCAAGGAAGAGGG+TGG | + | tig0036419:14237-14256 | None:intergenic | 45.0% | |
| ! | GCCAAATTTTATGGCCGAAC+CGG | - | tig0036419:14248-14267 | Msa1455670:CDS | 45.0% |
| !! | ACCGGTTCGGCCATAAAATT+TGG | + | tig0036419:14252-14271 | None:intergenic | 45.0% |
| AGTGAACATAGCTAGCTACC+TGG | + | tig0036419:14320-14339 | None:intergenic | 45.0% | |
| ! | ATTGATGGGCAGACATCATC+AGG | - | tig0036419:14784-14803 | Msa1455670:intron | 45.0% |
| TGCCACATGGCGTATATCAT+AGG | + | tig0036419:14845-14864 | None:intergenic | 45.0% | |
| GATATACGCCATGTGGCAAA+AGG | - | tig0036419:14847-14866 | Msa1455670:intron | 45.0% | |
| ! | CATTGGTACCTTTTGCCACA+TGG | + | tig0036419:14858-14877 | None:intergenic | 45.0% |
| !! | TGTGGCAAAAGGTACCAATG+TGG | - | tig0036419:14858-14877 | Msa1455670:intron | 45.0% |
| GGTACCAATGTGGACATCAA+AGG | - | tig0036419:14868-14887 | Msa1455670:intron | 45.0% | |
| AGTCTCCCCAATTTCCATGT+TGG | + | tig0036419:14992-15011 | None:intergenic | 45.0% | |
| CAACTGATCCACTCAAGGCA+GGG | + | tig0036419:14194-14213 | None:intergenic | 50.0% | |
| ATCAGTTGCCCTGAATCCCA+AGG | - | tig0036419:14206-14225 | Msa1455670:CDS | 50.0% | |
| TCAGTTGCCCTGAATCCCAA+GGG | - | tig0036419:14207-14226 | Msa1455670:CDS | 50.0% | |
| GGAGATTGAGCAAACCGGTT+CGG | + | tig0036419:14265-14284 | None:intergenic | 50.0% | |
| GGTGAGGAGATTGAGCAAAC+CGG | + | tig0036419:14270-14289 | None:intergenic | 50.0% | |
| GAACATAGCTAGCTACCTGG+TGG | + | tig0036419:14317-14336 | None:intergenic | 50.0% | |
| TCATTGTTGTACGAGGCAGC+TGG | - | tig0036419:14640-14659 | Msa1455670:intron | 50.0% | |
| !! | ATGGGGCGCTTGGCTTATTT+TGG | - | tig0036419:14683-14702 | Msa1455670:intron | 50.0% |
| ACTGAACCAACTCGTGGCTT+GGG | + | tig0036419:14931-14950 | None:intergenic | 50.0% | |
| !! | ACGAGTTGGTTCAGTCGACT+CGG | - | tig0036419:14936-14955 | Msa1455670:CDS | 50.0% |
| CAACTGATCCACTCAAGGCA+GGG | + | tig0036419:14194-14213 | None:intergenic | 50.0% | |
| ATCAGTTGCCCTGAATCCCA+AGG | - | tig0036419:14206-14225 | Msa1455670:CDS | 50.0% | |
| TCAGTTGCCCTGAATCCCAA+GGG | - | tig0036419:14207-14226 | Msa1455670:CDS | 50.0% | |
| GGAGATTGAGCAAACCGGTT+CGG | + | tig0036419:14265-14284 | None:intergenic | 50.0% | |
| GGTGAGGAGATTGAGCAAAC+CGG | + | tig0036419:14270-14289 | None:intergenic | 50.0% | |
| GAACATAGCTAGCTACCTGG+TGG | + | tig0036419:14317-14336 | None:intergenic | 50.0% | |
| TCATTGTTGTACGAGGCAGC+TGG | - | tig0036419:14640-14659 | Msa1455670:intron | 50.0% | |
| !! | ATGGGGCGCTTGGCTTATTT+TGG | - | tig0036419:14683-14702 | Msa1455670:intron | 50.0% |
| ACTGAACCAACTCGTGGCTT+GGG | + | tig0036419:14931-14950 | None:intergenic | 50.0% | |
| !! | ACGAGTTGGTTCAGTCGACT+CGG | - | tig0036419:14936-14955 | Msa1455670:CDS | 50.0% |
| TCATCAAGCCCTGCCTTGAG+TGG | - | tig0036419:14183-14202 | Msa1455670:CDS | 55.0% | |
| GCAACTGATCCACTCAAGGC+AGG | + | tig0036419:14195-14214 | None:intergenic | 55.0% | |
| CAGGGCAACTGATCCACTCA+AGG | + | tig0036419:14199-14218 | None:intergenic | 55.0% | |
| TGGCATGCCCTTGGGATTCA+GGG | + | tig0036419:14217-14236 | None:intergenic | 55.0% | |
| GCGGCCGCATCAACTTAAGT+TGG | + | tig0036419:14473-14492 | None:intergenic | 55.0% | |
| ATGCGGCCGCAATACCGTTA+TGG | - | tig0036419:14483-14502 | Msa1455670:CDS | 55.0% | |
| GTACGAGGCAGCTGGTAGAT+TGG | - | tig0036419:14648-14667 | Msa1455670:intron | 55.0% | |
| ! | AATCCCACATATGGGGCGCT+TGG | - | tig0036419:14673-14692 | Msa1455670:intron | 55.0% |
| AAGCCAAGCGCCCCATATGT+GGG | + | tig0036419:14679-14698 | None:intergenic | 55.0% | |
| TAAGCCAAGCGCCCCATATG+TGG | + | tig0036419:14680-14699 | None:intergenic | 55.0% | |
| ! | GCAGTTGAAGCTGTGCTGAC+TGG | - | tig0036419:14733-14752 | Msa1455670:intron | 55.0% |
| GACTGAACCAACTCGTGGCT+TGG | + | tig0036419:14932-14951 | None:intergenic | 55.0% | |
| GAGTCGACTGAACCAACTCG+TGG | + | tig0036419:14937-14956 | None:intergenic | 55.0% | |
| TCATCAAGCCCTGCCTTGAG+TGG | - | tig0036419:14183-14202 | Msa1455670:CDS | 55.0% | |
| GCAACTGATCCACTCAAGGC+AGG | + | tig0036419:14195-14214 | None:intergenic | 55.0% | |
| CAGGGCAACTGATCCACTCA+AGG | + | tig0036419:14199-14218 | None:intergenic | 55.0% | |
| TGGCATGCCCTTGGGATTCA+GGG | + | tig0036419:14217-14236 | None:intergenic | 55.0% | |
| GCGGCCGCATCAACTTAAGT+TGG | + | tig0036419:14473-14492 | None:intergenic | 55.0% | |
| ATGCGGCCGCAATACCGTTA+TGG | - | tig0036419:14483-14502 | Msa1455670:CDS | 55.0% | |
| GTACGAGGCAGCTGGTAGAT+TGG | - | tig0036419:14648-14667 | Msa1455670:intron | 55.0% | |
| ! | AATCCCACATATGGGGCGCT+TGG | - | tig0036419:14673-14692 | Msa1455670:intron | 55.0% |
| AAGCCAAGCGCCCCATATGT+GGG | + | tig0036419:14679-14698 | None:intergenic | 55.0% | |
| TAAGCCAAGCGCCCCATATG+TGG | + | tig0036419:14680-14699 | None:intergenic | 55.0% | |
| ! | GCAGTTGAAGCTGTGCTGAC+TGG | - | tig0036419:14733-14752 | Msa1455670:intron | 55.0% |
| GACTGAACCAACTCGTGGCT+TGG | + | tig0036419:14932-14951 | None:intergenic | 55.0% | |
| GAGTCGACTGAACCAACTCG+TGG | + | tig0036419:14937-14956 | None:intergenic | 55.0% | |
| GTGGCATGCCCTTGGGATTC+AGG | + | tig0036419:14218-14237 | None:intergenic | 60.0% | |
| GAAGAGGGTGGCATGCCCTT+GGG | + | tig0036419:14225-14244 | None:intergenic | 60.0% | |
| CTGAAGCCCAAGCCACGAGT+TGG | - | tig0036419:14922-14941 | Msa1455670:intron | 60.0% | |
| GTGGCATGCCCTTGGGATTC+AGG | + | tig0036419:14218-14237 | None:intergenic | 60.0% | |
| GAAGAGGGTGGCATGCCCTT+GGG | + | tig0036419:14225-14244 | None:intergenic | 60.0% | |
| CTGAAGCCCAAGCCACGAGT+TGG | - | tig0036419:14922-14941 | Msa1455670:intron | 60.0% | |
| ! | GGGTGTCGTGTGCTCCGCAA+AGG | - | tig0036419:14143-14162 | Msa1455670:CDS | 65.0% |
| GGAAGAGGGTGGCATGCCCT+TGG | + | tig0036419:14226-14245 | None:intergenic | 65.0% | |
| ! | GGGTGTCGTGTGCTCCGCAA+AGG | - | tig0036419:14143-14162 | Msa1455670:CDS | 65.0% |
| GGAAGAGGGTGGCATGCCCT+TGG | + | tig0036419:14226-14245 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0036419 | gene | 14125 | 15128 | 14125 | ID=Msa1455670;Name=Msa1455670 |
| tig0036419 | mRNA | 14125 | 15128 | 14125 | ID=Msa1455670-mRNA-1;Parent=Msa1455670;Name=Msa1455670-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|231 |
| tig0036419 | exon | 14933 | 15128 | 14933 | ID=Msa1455670-mRNA-1:exon:20353;Parent=Msa1455670-mRNA-1 |
| tig0036419 | exon | 14125 | 14624 | 14125 | ID=Msa1455670-mRNA-1:exon:20352;Parent=Msa1455670-mRNA-1 |
| tig0036419 | CDS | 14933 | 15128 | 14933 | ID=Msa1455670-mRNA-1:cds;Parent=Msa1455670-mRNA-1 |
| tig0036419 | CDS | 14125 | 14624 | 14125 | ID=Msa1455670-mRNA-1:cds;Parent=Msa1455670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
