AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1455990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455990 MtrunA17_Chr5g0440001 77.413 487 73 4 27 477 185 670 0.0 749
Msa1455990 MtrunA17_Chr5g0440131 73.810 504 78 5 27 477 73 575 0.0 728
Msa1455990 MtrunA17_Chr5g0440171 73.196 485 95 5 27 477 121 604 0.0 705
Msa1455990 MtrunA17_Chr5g0440051 83.243 370 9 3 105 446 3 347 0.0 625
Msa1455990 MtrunA17_Chr5g0440181 88.580 324 8 2 151 446 4 326 0.0 590
Msa1455990 MtrunA17_Chr5g0440021 75.536 233 29 1 242 446 38 270 1.41e-126 369
Msa1455990 MtrunA17_Chr3g0093631 72.936 218 29 3 213 402 2 217 8.23e-112 329
Msa1455990 MtrunA17_Chr5g0440041 78.723 141 30 0 306 446 41 181 1.34e-77 240
Msa1455990 MtrunA17_Chr0c14g0493691 76.562 64 14 1 66 128 1 64 4.59e-24 95.5
Msa1455990 MtrunA17_Chr8g0343131 25.097 259 164 10 232 466 118 370 4.17e-18 85.9
Msa1455990 MtrunA17_Chr4g0001331 28.723 282 157 10 217 472 11 274 5.04e-17 83.2
Msa1455990 MtrunA17_Chr2g0334261 31.401 207 108 10 232 413 467 664 2.34e-16 82.0
Msa1455990 MtrunA17_Chr3g0140631 29.119 261 126 10 232 460 43 276 4.17e-16 79.0
Msa1455990 MtrunA17_Chr4g0008561 26.667 270 139 11 226 460 19 264 2.29e-15 79.0
Msa1455990 MtrunA17_Chr3g0139121 29.268 205 116 9 232 413 489 687 3.03e-15 78.6
Msa1455990 MtrunA17_Chr8g0341251 27.372 274 159 11 215 466 38 293 3.69e-15 76.6
Msa1455990 MtrunA17_Chr8g0389031 29.048 210 112 10 232 413 268 468 1.04e-14 76.6
Msa1455990 MtrunA17_Chr3g0093641 73.810 42 11 0 405 446 1 42 1.86e-14 68.6
Msa1455990 MtrunA17_Chr8g0389011 28.571 210 113 10 232 413 504 704 2.17e-14 75.9
Msa1455990 MtrunA17_Chr8g0355131 27.442 215 113 8 288 472 105 306 2.69e-14 75.1
Msa1455990 MtrunA17_Chr7g0244521 28.807 243 129 10 221 436 7 232 2.95e-14 74.7
Msa1455990 MtrunA17_Chr7g0248491 27.778 270 146 12 230 461 165 423 4.16e-14 74.3
Msa1455990 MtrunA17_Chr6g0475131 29.433 282 149 13 230 473 14 283 6.26e-14 72.8
Msa1455990 MtrunA17_Chr3g0133541 24.453 274 158 10 231 472 312 568 6.51e-14 74.3
Msa1455990 MtrunA17_Chr6g0474861 28.929 280 153 14 230 473 291 560 7.71e-14 73.9
Msa1455990 MtrunA17_Chr8g0340051 29.339 242 122 10 203 410 4 230 7.84e-14 72.8
Msa1455990 MtrunA17_Chr1g0196031 30.909 220 103 9 230 411 756 964 9.80e-14 73.9
Msa1455990 MtrunA17_Chr8g0374701 35.135 148 76 7 325 468 252 383 1.11e-13 73.2
Msa1455990 MtrunA17_Chr1g0196001 30.909 220 103 9 230 411 716 924 1.17e-13 73.6
Msa1455990 MtrunA17_Chr7g0271451 28.448 232 130 9 218 423 187 408 1.47e-13 72.8
Msa1455990 MtrunA17_Chr3g0084451 25.127 394 228 17 68 423 356 720 1.54e-13 73.2
Msa1455990 MtrunA17_Chr5g0424581 28.293 205 126 8 262 461 179 367 1.55e-13 72.0
Msa1455990 MtrunA17_Chr6g0474811 29.433 282 149 14 230 473 578 847 1.62e-13 73.2
Msa1455990 MtrunA17_Chr6g0483731 29.317 249 105 12 209 416 57 275 1.83e-13 72.0
Msa1455990 MtrunA17_Chr5g0424501 27.559 254 145 11 231 461 197 434 1.88e-13 72.4
Msa1455990 MtrunA17_Chr6g0474871 28.929 280 153 14 230 473 570 839 2.01e-13 72.8
Msa1455990 MtrunA17_Chr7g0236531 29.435 248 120 10 195 410 15 239 2.06e-13 71.6
Msa1455990 MtrunA17_Chr4g0013131 29.412 221 112 9 221 412 7 212 2.08e-13 72.0
Msa1455990 MtrunA17_Chr5g0439334 29.240 171 94 4 314 463 460 624 2.44e-13 72.4
Msa1455990 MtrunA17_Chr5g0424651 28.293 205 126 8 262 461 375 563 2.46e-13 72.4
Msa1455990 MtrunA17_Chr2g0329871 26.341 205 122 9 232 413 81 279 2.47e-13 71.2
Msa1455990 MtrunA17_Chr5g0424531 26.852 216 137 7 262 472 70 269 2.48e-13 70.5
Msa1455990 MtrunA17_Chr5g0408571 29.148 223 106 9 230 411 197 408 3.45e-13 71.6
Msa1455990 MtrunA17_Chr6g0474901 29.293 297 149 17 217 473 565 840 4.39e-13 72.0
Msa1455990 MtrunA17_Chr4g0069251 25.088 283 161 12 218 461 171 441 5.48e-13 70.9
Msa1455990 MtrunA17_Chr6g0475201 28.622 283 150 13 230 473 579 848 5.89e-13 71.2
Msa1455990 MtrunA17_Chr5g0419221 28.251 223 108 9 230 411 718 929 6.08e-13 71.6
Msa1455990 MtrunA17_Chr5g0408811 30.000 230 91 9 230 411 694 901 6.57e-13 71.2
Msa1455990 MtrunA17_Chr3g0107011 28.444 225 120 9 220 417 8 218 6.95e-13 70.5
Msa1455990 MtrunA17_Chr8g0341051 28.804 184 100 6 305 463 19 196 7.09e-13 68.2
Msa1455990 MtrunA17_Chr6g0485761 30.317 221 102 9 230 417 299 500 7.17e-13 70.9
Msa1455990 MtrunA17_Chr1g0196011 28.058 278 141 11 203 437 516 777 7.25e-13 71.2
Msa1455990 MtrunA17_Chr8g0340071 29.630 243 120 11 203 410 478 704 7.59e-13 70.9
Msa1455990 MtrunA17_Chr3g0115051 31.410 156 92 7 324 472 509 656 7.59e-13 70.9
Msa1455990 MtrunA17_Chr5g0402551 35.000 140 74 6 325 460 258 384 7.80e-13 70.9
Msa1455990 MtrunA17_Chr5g0408421 28.704 216 116 9 230 411 700 911 8.34e-13 70.9
Msa1455990 MtrunA17_Chr3g0096351 25.795 283 159 12 218 461 173 443 8.37e-13 70.5
Msa1455990 MtrunA17_Chr0c01g0489481 27.876 226 117 8 229 424 334 543 1.01e-12 70.5
Msa1455990 MtrunA17_Chr5g0432871 28.405 257 128 10 232 453 622 857 1.03e-12 70.9
Msa1455990 MtrunA17_Chr5g0443121 28.000 225 128 9 224 423 181 396 1.07e-12 70.1
Msa1455990 MtrunA17_Chr2g0302631 26.293 232 135 9 218 423 176 397 1.07e-12 70.1
Msa1455990 MtrunA17_Chr4g0034931 25.091 275 161 12 230 468 144 409 1.17e-12 69.7
Msa1455990 MtrunA17_Chr3g0084661 27.888 251 127 11 210 423 14 247 1.31e-12 68.9
Msa1455990 MtrunA17_Chr4g0070851 34.211 152 86 7 314 460 178 320 1.40e-12 68.9
Msa1455990 MtrunA17_Chr8g0348451 26.866 268 151 11 230 461 148 406 1.44e-12 69.7
Msa1455990 MtrunA17_Chr3g0088321 28.102 274 143 14 228 461 55 314 1.63e-12 68.9
Msa1455990 MtrunA17_Chr8g0347671 30.128 156 89 4 323 466 39 186 1.63e-12 67.0
Msa1455990 MtrunA17_Chr0c02g0489761 34.028 144 70 6 325 460 198 324 1.70e-12 69.7
Msa1455990 MtrunA17_Chr1g0205561 27.320 194 102 8 228 410 233 398 1.89e-12 69.3
Msa1455990 MtrunA17_Chr3g0131181 33.951 162 80 7 304 460 136 275 1.95e-12 69.3
Msa1455990 MtrunA17_Chr5g0436871 35.043 117 68 3 308 419 18 131 2.86e-12 65.9
Msa1455990 MtrunA17_Chr6g0464171 28.251 223 108 9 230 411 719 930 2.89e-12 69.3
Msa1455990 MtrunA17_Chr4g0023221 27.508 309 157 12 192 459 689 971 3.01e-12 69.3
Msa1455990 MtrunA17_Chr3g0114511 26.667 270 146 11 220 462 26 270 3.32e-12 68.2
Msa1455990 MtrunA17_Chr6g0472051 37.736 106 61 3 308 411 32 134 3.40e-12 65.5
Msa1455990 MtrunA17_Chr4g0048681 28.986 207 107 8 230 410 289 481 4.27e-12 68.6
Msa1455990 MtrunA17_Chr5g0441691 34.752 141 73 8 325 460 188 314 4.32e-12 68.2
Msa1455990 MtrunA17_Chr6g0464211 28.700 223 107 9 230 411 718 929 4.52e-12 68.6
Msa1455990 MtrunA17_Chr1g0176421 36.170 141 71 6 325 460 281 407 4.60e-12 68.2
Msa1455990 MtrunA17_Chr1g0200601 33.333 162 81 7 304 460 137 276 5.10e-12 67.8
Msa1455990 MtrunA17_Chr6g0475091 30.918 207 107 10 230 410 586 782 5.18e-12 68.6
Msa1455990 MtrunA17_Chr8g0386981 28.049 164 102 6 310 472 516 664 5.58e-12 68.2
Msa1455990 MtrunA17_Chr2g0283111 25.753 299 157 12 216 469 601 879 5.92e-12 68.2
Msa1455990 MtrunA17_Chr6g0456231 29.130 230 130 9 219 424 297 517 6.38e-12 67.8
Msa1455990 MtrunA17_Chr5g0408621 28.182 220 112 7 230 411 753 964 6.69e-12 68.2
Msa1455990 MtrunA17_Chr4g0000481 27.329 161 90 5 310 460 184 327 7.05e-12 67.0
Msa1455990 MtrunA17_Chr1g0205421 25.000 280 168 11 218 472 4 266 7.11e-12 67.4
Msa1455990 MtrunA17_Chr1g0203881 31.206 141 78 6 325 460 161 287 7.13e-12 67.4
Msa1455990 MtrunA17_Chr3g0084441 28.870 239 115 10 217 423 505 720 7.23e-12 67.8
Msa1455990 MtrunA17_Chr1g0170551 25.455 220 110 9 225 412 6 203 8.12e-12 68.2
Msa1455990 MtrunA17_Chr7g0220741 26.250 240 130 8 216 424 296 519 8.60e-12 67.4
Msa1455990 MtrunA17_Chr5g0408821 35.849 106 63 3 308 411 221 323 8.85e-12 67.0
Msa1455990 MtrunA17_Chr1g0172951 29.464 224 113 7 230 423 347 555 1.06e-11 67.4
Msa1455990 MtrunA17_Chr2g0323231 27.536 276 161 11 175 419 121 388 1.13e-11 67.0
Msa1455990 MtrunA17_Chr5g0408741 29.464 224 104 10 230 411 623 834 1.36e-11 67.0
Msa1455990 MtrunA17_Chr5g0408431 29.075 227 107 10 230 414 717 931 1.45e-11 67.0
Msa1455990 MtrunA17_Chr3g0107051 31.250 224 115 10 225 422 20 230 1.59e-11 66.2
Msa1455990 MtrunA17_Chr2g0314611 29.630 216 121 9 228 420 487 694 1.73e-11 66.6
Msa1455990 MtrunA17_Chr3g0119241 39.394 99 53 4 309 406 420 512 1.95e-11 66.2
Msa1455990 MtrunA17_Chr6g0475111 30.435 207 108 10 230 410 592 788 2.04e-11 66.6
Msa1455990 MtrunA17_Chr6g0467711 26.449 276 149 12 228 463 403 664 2.16e-11 66.2
Msa1455990 MtrunA17_Chr8g0366461 28.444 225 105 8 230 411 713 924 2.17e-11 66.6
Msa1455990 MtrunA17_Chr8g0341151 29.936 157 94 5 323 469 678 828 2.22e-11 66.2
Msa1455990 MtrunA17_Chr8g0367071 30.909 165 89 7 264 421 419 565 2.42e-11 66.2
Msa1455990 MtrunA17_Chr7g0219681 35.897 117 61 5 311 421 627 735 2.45e-11 66.2
Msa1455990 MtrunA17_Chr8g0347571 30.189 212 102 8 230 410 575 771 2.50e-11 66.2
Msa1455990 MtrunA17_Chr4g0061201 30.622 209 103 10 231 410 813 1008 2.51e-11 66.2
Msa1455990 MtrunA17_Chr3g0081001 31.776 214 98 8 232 413 350 547 2.53e-11 65.9
Msa1455990 MtrunA17_Chr5g0408611 33.099 142 86 4 272 411 783 917 2.58e-11 66.2
Msa1455990 MtrunA17_Chr3g0136131 35.238 105 60 3 308 412 199 295 2.62e-11 65.1
Msa1455990 MtrunA17_Chr8g0347661 30.065 153 87 4 323 463 690 834 2.63e-11 66.2
Msa1455990 MtrunA17_Chr7g0267771 34.043 141 74 6 325 460 208 334 2.87e-11 65.5
Msa1455990 MtrunA17_Chr1g0206231 29.825 228 112 8 215 410 336 547 2.87e-11 65.9
Msa1455990 MtrunA17_Chr2g0318171 29.767 215 116 10 232 421 487 691 2.99e-11 65.9
Msa1455990 MtrunA17_Chr2g0299991 29.114 158 95 5 325 474 188 336 3.07e-11 64.7
Msa1455990 MtrunA17_Chr5g0409241 28.829 222 104 9 230 411 399 606 3.18e-11 65.9
Msa1455990 MtrunA17_Chr6g0464141 27.803 223 109 9 230 411 719 930 3.34e-11 65.9
Msa1455990 MtrunA17_Chr1g0150011 29.858 211 104 7 231 412 187 382 3.97e-11 65.1
Msa1455990 MtrunA17_Chr7g0236561 30.435 230 105 10 213 410 500 706 4.03e-11 65.5
Msa1455990 MtrunA17_Chr1g0206261 29.858 211 103 9 230 410 94 289 4.09e-11 64.7
Msa1455990 MtrunA17_Chr3g0113221 39.623 106 58 4 308 411 818 919 4.10e-11 65.5
Msa1455990 MtrunA17_Chr7g0252301 25.681 257 144 11 175 410 823 1053 4.46e-11 65.5
Msa1455990 MtrunA17_Chr7g0222321 34.028 144 80 7 302 437 828 964 5.14e-11 65.5
Msa1455990 MtrunA17_Chr5g0436861 35.849 106 62 3 309 411 819 921 5.64e-11 65.1
Msa1455990 MtrunA17_Chr4g0070941 28.571 217 104 10 231 413 413 612 5.67e-11 65.1
Msa1455990 MtrunA17_Chr3g0091461 30.435 207 106 9 231 410 809 1004 5.86e-11 65.1
Msa1455990 MtrunA17_Chr5g0439561 32.331 133 76 4 309 434 438 563 5.92e-11 64.7
Msa1455990 MtrunA17_Chr4g0073641 24.667 300 154 15 231 469 674 962 6.05e-11 65.1
Msa1455990 MtrunA17_Chr8g0361251 29.644 253 133 12 200 423 484 720 6.16e-11 65.1
Msa1455990 MtrunA17_Chr4g0048661 27.230 213 107 8 230 410 42 238 6.16e-11 63.9
Msa1455990 MtrunA17_Chr1g0165181 28.230 209 114 9 230 411 17 216 6.41e-11 63.2
Msa1455990 MtrunA17_Chr8g0341101 29.814 161 96 5 314 463 725 879 7.10e-11 64.7
Msa1455990 MtrunA17_Chr6g0487231 30.178 169 92 7 314 472 177 329 7.18e-11 63.5
Msa1455990 MtrunA17_Chr5g0394011 30.047 213 117 9 230 418 356 560 7.44e-11 64.7
Msa1455990 MtrunA17_Chr1g0188991 25.461 271 169 9 226 472 15 276 8.28e-11 64.3
Msa1455990 MtrunA17_Chr5g0408581 38.679 106 60 3 308 411 828 930 8.53e-11 64.7
Msa1455990 MtrunA17_Chr8g0341081 25.830 271 159 12 216 463 38 289 8.74e-11 63.2
Msa1455990 MtrunA17_Chr4g0029241 24.062 320 178 15 194 472 83 378 9.00e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455990 AT5G20930.1 62.577 489 144 6 27 477 201 688 0.0 616
Msa1455990 AT3G07980.1 26.316 285 156 11 213 466 7 268 1.03e-17 87.0
Msa1455990 AT3G07980.2 26.316 285 156 11 213 466 7 268 1.12e-17 87.0
Msa1455990 AT3G20200.1 29.555 247 128 10 204 413 419 656 5.89e-17 84.3
Msa1455990 AT3G20200.2 29.555 247 128 10 204 413 419 656 6.39e-17 84.3
Msa1455990 AT3G20200.4 29.555 247 128 10 204 413 419 656 6.39e-17 84.3
Msa1455990 AT3G20200.3 29.555 247 128 10 204 413 419 656 6.53e-17 84.3
Msa1455990 AT3G20410.2 35.294 153 80 7 325 472 211 349 3.05e-15 78.6
Msa1455990 AT3G20410.1 35.294 153 80 7 325 472 211 349 3.05e-15 78.6
Msa1455990 AT1G50700.3 34.641 153 81 6 325 472 193 331 3.55e-15 78.2
Msa1455990 AT1G50700.1 34.641 153 81 6 325 472 193 331 4.97e-15 77.8
Msa1455990 AT1G50700.2 34.641 153 81 6 325 472 193 331 5.75e-15 77.8
Msa1455990 AT1G16760.2 27.143 280 156 11 172 413 384 653 8.22e-15 77.8
Msa1455990 AT1G66750.1 32.558 215 102 9 225 412 12 210 8.96e-15 75.9
Msa1455990 AT1G16760.1 27.143 280 156 11 172 413 384 653 1.07e-14 77.4
Msa1455990 AT4G04740.2 36.054 147 76 6 325 468 189 320 1.90e-14 76.3
Msa1455990 AT1G78940.3 27.799 259 138 12 193 413 404 651 2.09e-14 76.3
Msa1455990 AT1G01540.1 28.509 228 115 9 230 425 158 369 2.28e-14 75.1
Msa1455990 AT1G78940.1 27.799 259 138 12 193 413 333 580 2.29e-14 76.3
Msa1455990 AT1G78940.2 27.799 259 138 12 193 413 404 651 2.37e-14 76.3
Msa1455990 AT4G04740.4 36.054 147 76 6 325 468 189 320 2.39e-14 75.9
Msa1455990 AT4G04740.6 36.054 147 76 6 325 468 189 320 2.39e-14 75.9
Msa1455990 AT4G04740.5 36.054 147 76 6 325 468 189 320 2.39e-14 75.9
Msa1455990 AT4G04740.3 36.054 147 76 6 325 468 189 320 2.39e-14 75.9
Msa1455990 AT4G04740.1 36.054 147 76 6 325 468 189 320 2.39e-14 75.9
Msa1455990 AT4G04740.7 36.054 147 76 6 325 468 189 320 2.39e-14 75.9
Msa1455990 AT5G61560.5 25.000 264 160 9 232 463 435 692 3.35e-14 75.9
Msa1455990 AT5G61560.1 25.000 264 160 9 232 463 435 692 3.35e-14 75.9
Msa1455990 AT5G61560.4 25.000 264 160 9 232 463 454 711 3.36e-14 75.9
Msa1455990 AT5G61560.3 25.000 264 160 9 232 463 454 711 3.36e-14 75.9
Msa1455990 AT5G61560.2 25.000 264 160 9 232 463 433 690 3.65e-14 75.5
Msa1455990 AT2G30360.1 28.374 289 161 11 213 473 8 278 4.62e-14 74.3
Msa1455990 AT1G01540.2 26.545 275 143 11 230 461 158 416 5.64e-14 74.3
Msa1455990 AT3G10660.2 33.951 162 80 7 304 460 293 432 6.47e-14 74.7
Msa1455990 AT3G10660.1 33.951 162 80 7 304 460 293 432 6.47e-14 74.7
Msa1455990 AT1G54960.1 25.271 277 163 10 231 477 73 335 1.16e-13 73.9
Msa1455990 AT1G54960.2 25.271 277 163 10 231 477 73 335 1.16e-13 73.9
Msa1455990 AT5G35380.1 28.365 208 114 10 232 413 420 618 1.31e-13 73.9
Msa1455990 AT4G00960.1 27.615 239 129 7 216 423 46 271 1.72e-13 72.4
Msa1455990 AT1G70130.1 27.391 230 122 7 231 430 339 553 1.83e-13 73.2
Msa1455990 AT4G29810.3 29.697 165 100 7 302 460 173 327 1.97e-13 71.6
Msa1455990 AT4G29810.1 29.697 165 100 7 302 460 164 318 2.34e-13 72.0
Msa1455990 AT4G29810.2 28.333 180 113 7 299 472 170 339 2.68e-13 71.6
Msa1455990 AT5G45820.1 26.335 281 163 9 218 472 4 266 5.09e-13 71.2
Msa1455990 AT5G04870.1 32.716 162 82 7 304 460 257 396 5.74e-13 71.6
Msa1455990 AT4G23650.1 28.929 280 134 16 226 468 78 329 9.72e-13 70.9
Msa1455990 AT3G56760.1 29.646 226 104 11 278 468 174 379 9.90e-13 70.9
Msa1455990 AT3G50530.1 34.459 148 77 7 325 468 272 403 1.03e-12 70.9
Msa1455990 AT1G18040.1 26.490 302 150 12 225 473 11 293 1.04e-12 70.1
Msa1455990 AT2G38910.1 35.443 158 75 7 308 460 245 380 1.16e-12 70.5
Msa1455990 AT1G79670.2 28.261 276 138 13 231 463 389 647 1.24e-12 70.9
Msa1455990 AT1G79670.1 28.261 276 138 13 231 463 426 684 1.52e-12 70.5
Msa1455990 AT5G61550.3 37.383 107 62 3 305 409 587 690 1.86e-12 70.1
Msa1455990 AT5G61550.1 37.383 107 62 3 305 409 587 690 1.86e-12 70.1
Msa1455990 AT5G61550.4 37.383 107 62 3 305 409 587 690 1.86e-12 70.1
Msa1455990 AT2G25090.1 27.037 270 154 10 221 460 10 266 1.89e-12 69.7
Msa1455990 AT5G61550.2 37.383 107 62 3 305 409 587 690 2.04e-12 70.1
Msa1455990 AT3G59110.1 24.199 281 166 11 218 461 182 452 2.60e-12 69.3
Msa1455990 AT3G21220.2 24.436 266 142 9 229 460 73 313 2.99e-12 68.2
Msa1455990 AT3G21220.1 24.436 266 142 9 229 460 73 313 2.99e-12 68.2
Msa1455990 AT5G60550.1 25.904 332 180 16 181 472 65 370 3.30e-12 68.6
Msa1455990 AT4G34500.1 25.357 280 142 11 230 461 149 409 3.49e-12 68.6
Msa1455990 AT5G51270.2 30.088 226 118 11 232 432 452 662 3.53e-12 69.3
Msa1455990 AT5G51270.1 30.088 226 118 11 232 432 452 662 3.53e-12 69.3
Msa1455990 AT4G03230.2 27.273 275 161 10 177 423 540 803 3.89e-12 69.3
Msa1455990 AT4G03230.6 27.273 275 161 10 177 423 540 803 3.89e-12 69.3
Msa1455990 AT4G01330.2 27.509 269 148 12 230 461 166 424 3.90e-12 68.6
Msa1455990 AT4G03230.3 27.273 275 161 10 177 423 475 738 4.22e-12 68.9
Msa1455990 AT1G69270.1 38.835 103 55 3 309 410 364 459 4.36e-12 68.6
Msa1455990 AT4G01330.1 27.509 269 148 12 230 461 166 424 4.37e-12 68.6
Msa1455990 AT2G38490.1 31.390 223 113 9 217 412 19 228 4.39e-12 68.2
Msa1455990 AT4G03230.7 27.273 275 161 10 177 423 483 746 4.51e-12 68.9
Msa1455990 AT4G03230.5 27.273 275 161 10 177 423 568 831 4.76e-12 68.9
Msa1455990 AT4G00970.2 25.781 256 142 9 203 423 317 559 4.86e-12 68.6
Msa1455990 AT1G09440.1 25.103 243 124 8 218 423 149 370 5.71e-12 68.2
Msa1455990 AT1G09440.2 25.103 243 124 8 218 423 149 370 5.71e-12 68.2
Msa1455990 AT4G01330.3 27.509 269 148 12 230 461 166 424 5.75e-12 68.2
Msa1455990 AT4G00970.1 25.781 256 142 9 203 423 317 559 5.92e-12 68.6
Msa1455990 AT1G49580.1 28.837 215 107 10 278 460 200 400 6.51e-12 68.2
Msa1455990 AT1G11303.1 29.515 227 109 10 219 410 499 709 6.91e-12 68.6
Msa1455990 AT5G10530.1 27.854 219 112 9 232 421 341 542 6.96e-12 68.2
Msa1455990 AT4G03230.4 27.273 275 161 10 177 423 640 903 7.12e-12 68.6
Msa1455990 AT4G03230.1 27.273 275 161 10 177 423 640 903 7.12e-12 68.6
Msa1455990 AT5G37450.3 37.615 109 63 3 314 420 739 844 7.43e-12 68.6
Msa1455990 AT4G26890.1 28.824 170 89 6 310 472 109 253 7.46e-12 67.8
Msa1455990 AT5G37450.4 28.700 223 116 7 229 420 431 641 8.05e-12 68.2
Msa1455990 AT2G42960.3 26.724 232 134 10 218 423 175 396 8.31e-12 67.8
Msa1455990 AT2G42960.5 26.724 232 134 10 218 423 175 396 8.31e-12 67.8
Msa1455990 AT2G42960.4 26.724 232 134 10 218 423 175 396 8.31e-12 67.8
Msa1455990 AT2G42960.1 26.724 232 134 10 218 423 175 396 8.31e-12 67.8
Msa1455990 AT5G37450.1 37.615 109 63 3 314 420 715 820 8.31e-12 68.2
Msa1455990 AT5G12180.1 34.899 149 75 8 325 468 193 324 8.87e-12 67.8
Msa1455990 AT5G37450.2 37.615 109 63 3 314 420 763 868 9.00e-12 68.2
Msa1455990 AT4G03230.8 26.909 275 162 10 177 423 482 745 9.05e-12 68.2
Msa1455990 AT1G51660.1 24.643 280 146 11 230 472 83 334 1.08e-11 66.6
Msa1455990 AT4G00960.2 36.036 111 66 3 314 423 71 177 1.26e-11 65.9
Msa1455990 AT4G02630.1 28.378 222 120 11 230 423 166 376 1.37e-11 67.0
Msa1455990 AT4G00960.3 36.036 111 66 3 314 423 78 184 1.48e-11 65.5
Msa1455990 AT1G10620.1 29.245 212 102 10 231 411 375 569 1.88e-11 67.0
Msa1455990 AT3G18810.1 34.234 111 65 3 302 411 433 536 1.90e-11 67.0
Msa1455990 AT1G56130.3 25.322 233 128 9 230 432 499 715 2.24e-11 66.6
Msa1455990 AT1G56130.1 25.322 233 128 9 230 432 550 766 2.50e-11 66.6
Msa1455990 AT1G56720.3 25.263 285 162 12 216 461 169 441 2.65e-11 66.2
Msa1455990 AT1G56720.1 25.263 285 162 12 216 461 169 441 2.65e-11 66.2
Msa1455990 AT1G56720.2 25.263 285 162 12 216 461 169 441 2.65e-11 66.2
Msa1455990 AT1G56720.4 25.263 285 162 12 216 461 169 441 2.65e-11 66.2
Msa1455990 AT3G23000.1 25.632 277 167 9 220 472 19 280 2.80e-11 65.9
Msa1455990 AT1G56130.2 25.322 233 128 9 230 432 698 914 4.38e-11 65.9
Msa1455990 AT3G59700.1 27.778 216 100 8 231 410 343 538 4.90e-11 65.5
Msa1455990 AT2G31880.1 27.027 222 117 8 229 411 350 565 4.98e-11 65.5
Msa1455990 AT4G23200.1 25.085 295 161 11 216 466 326 604 6.82e-11 65.1
Msa1455990 AT5G49780.1 39.394 99 53 3 314 411 642 734 6.91e-11 65.1
Msa1455990 AT5G58380.1 25.751 233 132 9 217 422 3 221 7.63e-11 64.7
Msa1455990 AT1G56120.3 26.180 233 126 9 230 432 548 764 7.75e-11 65.1
Msa1455990 AT4G26070.5 31.206 141 84 4 324 460 172 303 8.96e-11 63.5
Msa1455990 AT5G49780.2 39.394 99 53 3 314 411 763 855 9.66e-11 64.7
Msa1455990 AT5G49780.3 39.394 99 53 3 314 411 741 833 9.92e-11 64.7

Find 100 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACGTCTTCCTAAACCTTCT+TGG 0.206522 tig0036798:+9052 Msa1455990:CDS
CTCATCAAACAAAACATTTC+CGG 0.243441 tig0036798:-10018 Msa1455990:intergenic
AGAACAGTGCAGAATGTATT+TGG 0.253274 tig0036798:-9448 Msa1455990:intergenic
ATTGCCAAAGTGACTGATTT+TGG 0.256458 tig0036798:+10047 Msa1455990:CDS
TCTTCGGCAGACGTCCTTTC+GGG 0.267408 tig0036798:+10613 Msa1455990:CDS
TGGATCTACTGTTTCTAATA+AGG 0.280426 tig0036798:+10707 Msa1455990:CDS
ATCGTCATATTGTTCGTTTA+TGG 0.293409 tig0036798:+9407 Msa1455990:CDS
CTCTTCGGCAGACGTCCTTT+CGG 0.305418 tig0036798:+10612 Msa1455990:CDS
TCGTCATATTGTTCGTTTAT+GGG 0.334263 tig0036798:+9408 Msa1455990:CDS
TTCCGGGCTTTAAATCATAA+TGG 0.335280 tig0036798:-10001 Msa1455990:intergenic
TTACATAAGGCATGCAATTC+GGG 0.347046 tig0036798:+9357 Msa1455990:CDS
TTGCTCTGCTCAAAGCATTC+AGG 0.349888 tig0036798:-10332 Msa1455990:intergenic
CTCCCTTTCCAAGAAGGTTT+AGG 0.357191 tig0036798:-9060 Msa1455990:intergenic
GAAATATTCTCTGTTGTGTT+TGG 0.361521 tig0036798:-10641 Msa1455990:intergenic
CTCGACTTGCCAGCATTAAA+CGG 0.361576 tig0036798:+8834 Msa1455990:CDS
TGAGCAATTGTTAATACATC+TGG 0.365932 tig0036798:-11498 Msa1455990:intergenic
TCATCAAACAAAACATTTCC+GGG 0.383234 tig0036798:-10017 Msa1455990:intergenic
GAACTGTCGTATCTGAGATC+TGG 0.388952 tig0036798:+7808 Msa1455990:CDS
AAATACATTCTGCACTGTTC+TGG 0.390109 tig0036798:+9450 Msa1455990:CDS
GTTACATAAGGCATGCAATT+CGG 0.394507 tig0036798:+9356 Msa1455990:CDS
CCCAGGGTGCTGGAACATAT+TGG 0.409062 tig0036798:+10123 Msa1455990:CDS
TCGTGAAATGAAACGCATAC+TGG 0.425758 tig0036798:+8982 Msa1455990:CDS
ATCCATTATGATTTAAAGCC+CGG 0.428092 tig0036798:+9999 Msa1455990:CDS
GGAGAATGACGTGGGATCCC+AGG 0.443783 tig0036798:+10085 Msa1455990:CDS
CGACAGAATTCGTCGAGACT+TGG 0.446796 tig0036798:+7684 Msa1455990:CDS
CAGGTTGATGTCTGGTCTGC+TGG 0.447095 tig0036798:+10570 Msa1455990:intron
TTCCTAAACCTTCTTGGAAA+GGG 0.462039 tig0036798:+9058 Msa1455990:CDS
ACCAATATGTTCCAGCACCC+TGG 0.462746 tig0036798:-10124 Msa1455990:intergenic
AAATCATAATGGATAACCTT+CGG 0.464229 tig0036798:-9990 Msa1455990:intergenic
TATAGCCTCCCTTTCCAAGA+AGG 0.475020 tig0036798:-9066 Msa1455990:intergenic
TATGTTGCATGCAAGCTTCA+TGG 0.476601 tig0036798:+9298 Msa1455990:CDS
ATACATCTGGTCTCTCCGCC+TGG 0.485420 tig0036798:-11485 Msa1455990:intergenic
TCGACTTGCCAGCATTAAAC+GGG 0.487202 tig0036798:+8835 Msa1455990:CDS
CCAATATGTTCCAGCACCCT+GGG 0.487394 tig0036798:-10123 Msa1455990:intergenic
GAACTTACATCCCAGGGTGC+TGG 0.489683 tig0036798:+10113 Msa1455990:CDS
TGACGTGGGATCCCAGGGTA+TGG 0.494154 tig0036798:+10091 Msa1455990:CDS
GTAAAGAAGAAGCTCTGACT+TGG 0.495045 tig0036798:+6302 Msa1455990:CDS
ACGTTCAAAAGTTGCTCAGT+TGG 0.499732 tig0036798:+6810 Msa1455990:CDS
AGAAGAAGCAACGTTACATA+AGG 0.500921 tig0036798:+9344 Msa1455990:CDS
GCAACTTACCCGTTTAATGC+TGG 0.502295 tig0036798:-8843 Msa1455990:intergenic
GTGGAAAACAGGTTGATGTC+TGG 0.502498 tig0036798:+10562 Msa1455990:intron
GGAAGATGGTCCGGCGTTGA+AGG 0.503240 tig0036798:+7830 Msa1455990:CDS
TGAGATCTGGGAAGATGGTC+CGG 0.504164 tig0036798:+7821 Msa1455990:CDS
AGGCTATAGCGAGGTGTACA+AGG 0.504249 tig0036798:+9081 Msa1455990:CDS
AGAAACCTCTGATAAAGAAA+AGG 0.504276 tig0036798:+6858 Msa1455990:CDS
AGATGCAGAGGCTGGATTGT+CGG 0.513612 tig0036798:+8778 Msa1455990:CDS
TTCTTTCATTCATGTAAACA+AGG 0.517252 tig0036798:-9965 None:intergenic
TTCTAAAGCTTTGATTGAGG+AGG 0.520433 tig0036798:+6279 None:intergenic
GGGTATGGAACTTACATCCC+AGG 0.526804 tig0036798:+10106 Msa1455990:CDS
AAGACCAAAATCAGTCACTT+TGG 0.528872 tig0036798:-10051 Msa1455990:intergenic
TACTGTTTCTAATAAGGCTA+AGG 0.529499 tig0036798:+10713 Msa1455990:CDS
CGTTTCTAAAGCTTTGATTG+AGG 0.529500 tig0036798:+6276 None:intergenic
TCTGACTTGGGAGGGACTGA+AGG 0.536848 tig0036798:+6315 Msa1455990:CDS
GTATCTGAGATCTGGGAAGA+TGG 0.538284 tig0036798:+7816 Msa1455990:CDS
GATGGAATAGATGCAGAGGC+TGG 0.540764 tig0036798:+8770 Msa1455990:CDS
CTTCCTAAACCTTCTTGGAA+AGG 0.541905 tig0036798:+9057 Msa1455990:CDS
TCTAAAGCTTTGATTGAGGA+GGG 0.543003 tig0036798:+6280 None:intergenic
TAAAGAAGAAGCTCTGACTT+GGG 0.544506 tig0036798:+6303 Msa1455990:CDS
CCACCTCTACGAACTAGAGA+AGG 0.545424 tig0036798:+8949 Msa1455990:CDS
AACTGTCGTATCTGAGATCT+GGG 0.545951 tig0036798:+7809 Msa1455990:CDS
GGATGTAAGTTCCATACCCT+GGG 0.549900 tig0036798:-10102 Msa1455990:intergenic
ATGGTTGAAGATAAGGGTGA+TGG 0.550332 tig0036798:+8752 Msa1455990:intron
CACGAAGTAGAATTTCCCTC+TGG 0.565256 tig0036798:+10687 Msa1455990:CDS
CGAAGAGAAAATGAAACCTA+AGG 0.565721 tig0036798:+7326 Msa1455990:CDS
GGGATGTAAGTTCCATACCC+TGG 0.566104 tig0036798:-10103 Msa1455990:intergenic
CTAAACCTTCTTGGAAAGGG+AGG 0.576157 tig0036798:+9061 Msa1455990:CDS
CTTGCTGAAGTCAGTGTCAA+AGG 0.579665 tig0036798:+7632 Msa1455990:CDS
GAGAATGACGTGGGATCCCA+GGG 0.586331 tig0036798:+10086 Msa1455990:CDS
CATGAATGAAAGAACGCCGA+AGG 0.589780 tig0036798:+9974 Msa1455990:CDS
GTATAATATTCACAAGACCT+TGG 0.590329 tig0036798:+9381 Msa1455990:CDS
CCTTCTCTAGTTCGTAGAGG+TGG 0.590813 tig0036798:-8949 Msa1455990:intergenic
TTCATGGTGTAAATGCTCAA+TGG 0.599823 tig0036798:+9314 Msa1455990:CDS
GAAGAAGCTCTGACTTGGGA+GGG 0.604279 tig0036798:+6307 Msa1455990:CDS
GAAACAACTGCAAGAAACAA+AGG 0.606100 tig0036798:+8379 Msa1455990:intron
CAAGATAGTGGAGAATGACG+TGG 0.612643 tig0036798:+10076 Msa1455990:CDS
CTCTGCTCAAAGCATTCAGG+AGG 0.615082 tig0036798:-10329 Msa1455990:intergenic
TCTTTCATTCATGTAAACAA+GGG 0.617138 tig0036798:-9964 Msa1455990:intergenic
AACAATATGACGATGAACCA+AGG 0.617976 tig0036798:-9398 Msa1455990:intergenic
GCGTTGCTTAAAAGCTGCAG+CGG 0.619678 tig0036798:+6340 Msa1455990:CDS
TTCCCTTCTCTAGTTCGTAG+AGG 0.621836 tig0036798:-8952 Msa1455990:intergenic
GACACCTCGCATATCATCCA+AGG 0.625214 tig0036798:+10355 Msa1455990:CDS
TGTGTTTGGTCATGCCCGAA+AGG 0.626224 tig0036798:-10627 Msa1455990:intergenic
AGGTTGAGAGACAAGAAGCA+AGG 0.628654 tig0036798:+7652 Msa1455990:CDS
AGCGGTTAGACATACAAGCT+GGG 0.629747 tig0036798:-7862 Msa1455990:intergenic
GCATGCATATCCTTCAACGC+CGG 0.630379 tig0036798:-7840 Msa1455990:intergenic
CACCTCTACGAACTAGAGAA+GGG 0.631328 tig0036798:+8950 Msa1455990:CDS
AGAAGAAGCTCTGACTTGGG+AGG 0.631674 tig0036798:+6306 Msa1455990:CDS
GCGGTGTCTTACATATGACC+AGG 0.641982 tig0036798:+11467 Msa1455990:CDS
TCTACGAACTAGAGAAGGGA+AGG 0.642111 tig0036798:+8954 Msa1455990:CDS
AAGATAGTGGAGAATGACGT+GGG 0.645966 tig0036798:+10077 Msa1455990:CDS
GGTATGGAACTTACATCCCA+GGG 0.647817 tig0036798:+10107 Msa1455990:CDS
GGGTGATGGAATAGATGCAG+AGG 0.649260 tig0036798:+8766 Msa1455990:CDS
GGTTTAGGAAGACGTAACGA+TGG 0.650961 tig0036798:-9045 Msa1455990:intergenic
TTTACCTTGGATGATATGCG+AGG 0.653766 tig0036798:-10359 Msa1455990:intergenic
ATTAGAAACAGTAGATCCAG+AGG 0.657220 tig0036798:-10703 Msa1455990:intergenic
TTAGAAACAGTAGATCCAGA+GGG 0.665149 tig0036798:-10702 Msa1455990:intergenic
ACAACTGCAAGAAACAAAGG+AGG 0.701854 tig0036798:+8382 Msa1455990:CDS
GGAAGATATTCTCATTCACG+AGG 0.708360 tig0036798:+8799 Msa1455990:CDS
TGGAAAGGGAGGCTATAGCG+AGG 0.734939 tig0036798:+9072 Msa1455990:CDS
GTGTCTTACATATGACCAGG+CGG 0.735603 tig0036798:+11470 Msa1455990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATCTTTGTATTAAATT+AGG + tig0036798:6771-6790 Msa1455990:intron 10.0%
!! TTTATCTTTGTATTAAATTA+GGG + tig0036798:6772-6791 Msa1455990:intron 10.0%
!!! CTAAATTTTATTTCATTTAT+AGG - tig0036798:6994-7013 Msa1455990:intergenic 10.0%
!!! GTATTTAAAATATAATGAAT+TGG + tig0036798:7431-7450 Msa1455990:intron 10.0%
!! TTCCTATATTAAAATAAAAA+GGG - tig0036798:11098-11117 Msa1455990:intergenic 10.0%
!! TATTATTATTAAGCCTTAAA+TGG + tig0036798:6434-6453 Msa1455990:intron 15.0%
!! TTATCTTTGTATTAAATTAG+GGG + tig0036798:6773-6792 Msa1455990:intron 15.0%
!! AAACTACATATTAATTATCA+TGG - tig0036798:6959-6978 Msa1455990:intergenic 15.0%
!! ATTAATATGTAGTTTCAAAA+AGG + tig0036798:6964-6983 Msa1455990:intron 15.0%
!!! TTTTTGAAATGTAAATTGTA+AGG + tig0036798:7190-7209 Msa1455990:intron 15.0%
!! AAATCAAATATTAAAGTAAC+AGG - tig0036798:7271-7290 Msa1455990:intergenic 15.0%
!!! GTTACTTTAATATTTGATTT+TGG + tig0036798:7271-7290 Msa1455990:intron 15.0%
!!! TTTAAAATATAATGAATTGG+TGG + tig0036798:7434-7453 Msa1455990:intron 15.0%
!! TCATGATATATAATAATACA+AGG - tig0036798:8595-8614 Msa1455990:intergenic 15.0%
!!! AATTTTGTGAATATTATACA+AGG + tig0036798:9150-9169 Msa1455990:intron 15.0%
!! TTATTTGAGCTTATATATAA+TGG + tig0036798:9566-9585 Msa1455990:intron 15.0%
!!! AATTAAAAAGTTTTTTACCT+TGG - tig0036798:10375-10394 Msa1455990:intergenic 15.0%
!! TAATATAAGTAAATGAAAGA+TGG - tig0036798:10791-10810 Msa1455990:intergenic 15.0%
!! TATATTATTCTATTGTTTAG+TGG + tig0036798:10804-10823 Msa1455990:intron 15.0%
!!! TTGTTTTAGGTTATATTTAT+TGG + tig0036798:10843-10862 Msa1455990:intron 15.0%
!! TCCTATATTAAAATAAAAAG+GGG - tig0036798:11097-11116 Msa1455990:intergenic 15.0%
!! CTTCCTATATTAAAATAAAA+AGG - tig0036798:11099-11118 Msa1455990:intergenic 15.0%
!!! CTTTTTATTTTAATATAGGA+AGG + tig0036798:11097-11116 Msa1455990:intron 15.0%
!!! AATTATTGATTGGAAATTAA+TGG - tig0036798:11299-11318 Msa1455990:intergenic 15.0%
!! AAAAAGATAATAGTAGTAGA+GGG - tig0036798:6497-6516 Msa1455990:intergenic 20.0%
!! TAAAAAGATAATAGTAGTAG+AGG - tig0036798:6498-6517 Msa1455990:intergenic 20.0%
!! ATTGAAAGAGATCATATAAA+AGG - tig0036798:6669-6688 Msa1455990:intergenic 20.0%
!! TATCTTTGTATTAAATTAGG+GGG + tig0036798:6774-6793 Msa1455990:intron 20.0%
!! AGTGTCAATTAGTTAAATTT+GGG - tig0036798:7017-7036 Msa1455990:intergenic 20.0%
!! AAGTGTCAATTAGTTAAATT+TGG - tig0036798:7018-7037 Msa1455990:intergenic 20.0%
!! ATAGTACAACTTCAAATTTA+TGG + tig0036798:7152-7171 Msa1455990:intron 20.0%
!!! TTATATTTTAAATACCACGT+AGG - tig0036798:7426-7445 Msa1455990:intergenic 20.0%
!!! TTTTATTTTGGGTTTCTTAT+TGG + tig0036798:7758-7777 Msa1455990:intron 20.0%
!! TTGTTGCAAAATAAATACAA+GGG - tig0036798:7894-7913 Msa1455990:intergenic 20.0%
!! ATTGTTGCAAAATAAATACA+AGG - tig0036798:7895-7914 Msa1455990:intergenic 20.0%
!!! TTGTATTTATTTTGCAACAA+TGG + tig0036798:7894-7913 Msa1455990:intron 20.0%
!! AATATAAGATCTTTAATGAG+AGG - tig0036798:8079-8098 Msa1455990:intergenic 20.0%
!! GATGACTAAATACAATTATA+AGG + tig0036798:8142-8161 Msa1455990:intron 20.0%
!! ACTAAATACAATTATAAGGA+TGG + tig0036798:8146-8165 Msa1455990:intron 20.0%
!! TTCTGTAAAACATAAATCAA+GGG - tig0036798:8362-8381 Msa1455990:intergenic 20.0%
!! TTTCTGTAAAACATAAATCA+AGG - tig0036798:8363-8382 Msa1455990:intergenic 20.0%
!! TTATTCAAGAAAAAACAATC+TGG + tig0036798:8425-8444 Msa1455990:CDS 20.0%
!! TATTTACATTTGCCAATAAA+AGG - tig0036798:9212-9231 Msa1455990:intergenic 20.0%
!! AAGCTTAAAACTAACAAATT+TGG - tig0036798:10195-10214 Msa1455990:intergenic 20.0%
!! AAAGTTAAAGTATAATGAAG+AGG - tig0036798:10221-10240 Msa1455990:intergenic 20.0%
!!! TTAAACCAACATCATTTTAA+TGG - tig0036798:10936-10955 Msa1455990:intergenic 20.0%
!! GAACCATAATAATATTTCTT+AGG + tig0036798:11048-11067 Msa1455990:intron 20.0%
!! AAGCCTAAGAAATATTATTA+TGG - tig0036798:11054-11073 Msa1455990:intergenic 20.0%
!!! TCCCCTTTTTATTTTAATAT+AGG + tig0036798:11093-11112 Msa1455990:intron 20.0%
!! GCAGAATTATAATTATTGAT+TGG - tig0036798:11309-11328 Msa1455990:intergenic 20.0%
!!! AGATAAAAAGGTACTATTTT+TGG - tig0036798:11379-11398 Msa1455990:intergenic 20.0%
!!! AATATTGTCAGGATTTTATT+CGG + tig0036798:11445-11464 Msa1455990:intron 20.0%
! CGAATATTTAAGTAACTGTT+AGG + tig0036798:6377-6396 Msa1455990:intron 25.0%
! TATTTAAGTAACTGTTAGGA+TGG + tig0036798:6381-6400 Msa1455990:intron 25.0%
!!! AAAAGAGTATCAACCATTTA+AGG - tig0036798:6450-6469 Msa1455990:intergenic 25.0%
! GACAAGAAATAAATGCAATT+AGG - tig0036798:6546-6565 Msa1455990:intergenic 25.0%
! CTGAAAAATAATCAAACCTT+AGG - tig0036798:7345-7364 Msa1455990:intergenic 25.0%
!!! ATGAACTAGAAATTTTGAAG+AGG + tig0036798:7495-7514 Msa1455990:intron 25.0%
!!! GAAATGTTTTAATCAGGTAT+AGG + tig0036798:7706-7725 Msa1455990:intron 25.0%
! TGTTGCAAAATAAATACAAG+GGG - tig0036798:7893-7912 Msa1455990:intergenic 25.0%
! AGAAAGAAATTATCCAAAAC+AGG - tig0036798:7951-7970 Msa1455990:intergenic 25.0%
! CAATCCAAAAAAATGCAAAA+TGG - tig0036798:8123-8142 Msa1455990:intergenic 25.0%
! AAATACAATTATAAGGATGG+TGG + tig0036798:8149-8168 Msa1455990:intron 25.0%
!! ATGTTTCTATTACTTCTGTA+TGG + tig0036798:8249-8268 Msa1455990:intron 25.0%
! AAAACATAAATCAAGGGATA+AGG - tig0036798:8356-8375 Msa1455990:intergenic 25.0%
! CTAAAAGAAAGGGAAAAAAA+AGG - tig0036798:8464-8483 Msa1455990:intergenic 25.0%
! AAATGCAAACTAAGAATGAA+GGG - tig0036798:8556-8575 Msa1455990:intergenic 25.0%
! AAAATGCAAACTAAGAATGA+AGG - tig0036798:8557-8576 Msa1455990:intergenic 25.0%
! TATGTCAATTAGTCATCTTA+AGG - tig0036798:8625-8644 Msa1455990:intergenic 25.0%
! TTTGTTTCAAATCAACCTAT+CGG + tig0036798:8650-8669 Msa1455990:intron 25.0%
! TTATTCTGCTTACTTTCTAA+TGG + tig0036798:8699-8718 Msa1455990:intron 25.0%
!!! GGTTTGAATTTTGTTTTTCT+TGG + tig0036798:8720-8739 Msa1455990:intron 25.0%
! TTATCTTCAACCATAGAAAA+GGG - tig0036798:8746-8765 Msa1455990:intergenic 25.0%
!! TTTTCTATGGTTGAAGATAA+GGG + tig0036798:8746-8765 Msa1455990:intron 25.0%
! TTTCCTCTTTATACTTCTAA+TGG + tig0036798:8885-8904 Msa1455990:intron 25.0%
!! CTAATGGTAGAACAATTTTT+AGG + tig0036798:8901-8920 Msa1455990:intron 25.0%
! AATCAAACAGACAATATTAG+AGG - tig0036798:9810-9829 Msa1455990:intergenic 25.0%
! TCTTTCATTCATGTAAACAA+GGG - tig0036798:9967-9986 Msa1455990:intergenic 25.0%
! TTCTTTCATTCATGTAAACA+AGG - tig0036798:9968-9987 Msa1455990:intergenic 25.0%
!!! AAATCATAATGGATAACCTT+CGG - tig0036798:9993-10012 Msa1455990:intergenic 25.0%
! AAAGATCATTGAAACATGAA+GGG - tig0036798:10250-10269 Msa1455990:intergenic 25.0%
! CTGCAAATCAAAAAAGAAAA+GGG - tig0036798:10302-10321 Msa1455990:intergenic 25.0%
! AAAATCGATAACACAGAAAA+AGG - tig0036798:10414-10433 Msa1455990:intergenic 25.0%
! TTTCAATTTGTCAGTCATTA+TGG + tig0036798:10431-10450 Msa1455990:intron 25.0%
!!! AGTTAGTTGTTTTCACAATA+CGG - tig0036798:10490-10509 Msa1455990:intergenic 25.0%
!!! TGTTTTTATTACATGCTCTT+CGG + tig0036798:10597-10616 Msa1455990:CDS 25.0%
! ATTATTCTATTGTTTAGTGG+TGG + tig0036798:10807-10826 Msa1455990:intron 25.0%
! CAAATTCAGATAAATCACAA+AGG - tig0036798:10887-10906 Msa1455990:intergenic 25.0%
!!! AAAGGTACTATTTTTGGATT+TGG - tig0036798:11373-11392 Msa1455990:intergenic 25.0%
! GTAAGGATGTATAGATAAAA+AGG - tig0036798:11391-11410 Msa1455990:intergenic 25.0%
! TTGATACTCTTTTGTGCTTT+TGG + tig0036798:6457-6476 Msa1455990:intron 30.0%
TTTCTTGTCTTTCTCTTTGT+TGG + tig0036798:6557-6576 Msa1455990:intron 30.0%
!! TTTCTCTTTGTTGGTTGTTT+TGG + tig0036798:6566-6585 Msa1455990:intron 30.0%
AGAAACCTCTGATAAAGAAA+AGG + tig0036798:6858-6877 Msa1455990:CDS 30.0%
! GTATACCTTTTCTTTATCAG+AGG - tig0036798:6866-6885 Msa1455990:intergenic 30.0%
TATACCAATAATTGTCTGCA+AGG + tig0036798:6881-6900 Msa1455990:intron 30.0%
ATAACTTACATTGTATCTCC+TGG + tig0036798:7121-7140 Msa1455990:intron 30.0%
TGTAAGGACATATGTATTCT+AGG + tig0036798:7206-7225 Msa1455990:intron 30.0%
!! TATTTGATTTTGGCACATGT+AGG + tig0036798:7281-7300 Msa1455990:intron 30.0%
! CTTAGGTTTCATTTTCTCTT+CGG - tig0036798:7328-7347 Msa1455990:intergenic 30.0%
TCATACTCCTGTATAAGTTA+AGG + tig0036798:7527-7546 Msa1455990:intron 30.0%
!!! TTTTTTTTATGCGTGACACA+TGG - tig0036798:7559-7578 Msa1455990:intergenic 30.0%
GTGTCACGCATAAAAAAAAA+AGG + tig0036798:7560-7579 Msa1455990:intron 30.0%
!!! GACTTGGAAATGTTTTAATC+AGG + tig0036798:7700-7719 Msa1455990:CDS 30.0%
!!! ATGTTTTAATCAGGTATAGG+TGG + tig0036798:7709-7728 Msa1455990:intron 30.0%
!! TTTGTGCAACAATGGTTTTA+TGG + tig0036798:8052-8071 Msa1455990:intron 30.0%
!!! TTGTGCAACAATGGTTTTAT+GGG + tig0036798:8053-8072 Msa1455990:intron 30.0%
!! TTCGCCATTTTGCATTTTTT+TGG + tig0036798:8116-8135 Msa1455990:intron 30.0%
AAGGGAAAAAAAAGGATACT+GGG - tig0036798:8456-8475 Msa1455990:intergenic 30.0%
AAAGGGAAAAAAAAGGATAC+TGG - tig0036798:8457-8476 Msa1455990:intergenic 30.0%
AAGACAAGTGCTAAAAGAAA+GGG - tig0036798:8474-8493 Msa1455990:intergenic 30.0%
TAAGACAAGTGCTAAAAGAA+AGG - tig0036798:8475-8494 Msa1455990:intergenic 30.0%
CTTATCTTCAACCATAGAAA+AGG - tig0036798:8747-8766 Msa1455990:intergenic 30.0%
! CTTTTCTATGGTTGAAGATA+AGG + tig0036798:8745-8764 Msa1455990:intron 30.0%
! CTACCATTAGAAGTATAAAG+AGG - tig0036798:8891-8910 Msa1455990:intergenic 30.0%
TACTTCAAATCACTGCAAAA+AGG - tig0036798:9239-9258 Msa1455990:intergenic 30.0%
TGAAGTAAAAAATTTCCAGC+AGG + tig0036798:9252-9271 Msa1455990:intron 30.0%
GTATAATATTCACAAGACCT+TGG + tig0036798:9381-9400 Msa1455990:CDS 30.0%
ATCGTCATATTGTTCGTTTA+TGG + tig0036798:9407-9426 Msa1455990:CDS 30.0%
TCGTCATATTGTTCGTTTAT+GGG + tig0036798:9408-9427 Msa1455990:CDS 30.0%
!!! TCGTTTTAAGAAAACAAGTG+AGG - tig0036798:9499-9518 Msa1455990:intergenic 30.0%
!!! GACTATTTTGCTGACTTTTT+TGG + tig0036798:9517-9536 Msa1455990:intron 30.0%
! TTAAGTTGTTCATCCAAACA+TGG + tig0036798:9784-9803 Msa1455990:intron 30.0%
!! AGATCTTGATGATGTTCTTA+AGG + tig0036798:9884-9903 Msa1455990:intron 30.0%
! ATCCATTATGATTTAAAGCC+CGG + tig0036798:9999-10018 Msa1455990:CDS 30.0%
TCATCAAACAAAACATTTCC+GGG - tig0036798:10020-10039 Msa1455990:intergenic 30.0%
CTCATCAAACAAAACATTTC+CGG - tig0036798:10021-10040 Msa1455990:intergenic 30.0%
!!! AATGTTTTGTTTGATGAGCT+TGG + tig0036798:10023-10042 Msa1455990:CDS 30.0%
GAAAGATCATTGAAACATGA+AGG - tig0036798:10251-10270 Msa1455990:intergenic 30.0%
AAAAAAGAAAAGGGAAAGAG+AGG - tig0036798:10293-10312 Msa1455990:intergenic 30.0%
CCTGCAAATCAAAAAAGAAA+AGG - tig0036798:10303-10322 Msa1455990:intergenic 30.0%
!!! CCTTTTCTTTTTTGATTTGC+AGG + tig0036798:10300-10319 Msa1455990:intron 30.0%
!! GTACTGATTATCATGAAAGA+TGG - tig0036798:10522-10541 Msa1455990:intergenic 30.0%
GAAATATTCTCTGTTGTGTT+TGG - tig0036798:10644-10663 Msa1455990:intergenic 30.0%
!! TGGATCTACTGTTTCTAATA+AGG + tig0036798:10707-10726 Msa1455990:CDS 30.0%
!! TACTGTTTCTAATAAGGCTA+AGG + tig0036798:10713-10732 Msa1455990:CDS 30.0%
AGGCAGTAATTACTAGAAAA+GGG - tig0036798:10749-10768 Msa1455990:intergenic 30.0%
!! ACACAATCTTTGCTTGTTTT+AGG + tig0036798:10830-10849 Msa1455990:intron 30.0%
ATTGGACAAAATGTCAACTT+TGG + tig0036798:10861-10880 Msa1455990:intron 30.0%
!! ATTTTAATGGCACTGAGATA+TGG - tig0036798:10923-10942 Msa1455990:intergenic 30.0%
TTGCACCAATGAGAAATTAT+TGG + tig0036798:10970-10989 Msa1455990:intron 30.0%
CACAACCAATAATTTCTCAT+TGG - tig0036798:10978-10997 Msa1455990:intergenic 30.0%
TTCTGTCAGTGATAATAAGA+AGG - tig0036798:11031-11050 Msa1455990:intergenic 30.0%
TAATATTTCTTAGGCTTGAG+CGG + tig0036798:11057-11076 Msa1455990:intron 30.0%
CATCACAATCTTTCAATCAA+CGG - tig0036798:11232-11251 Msa1455990:intergenic 30.0%
AATTGTCAGGTTTCATAGTA+AGG - tig0036798:11408-11427 Msa1455990:intergenic 30.0%
TGAGCAATTGTTAATACATC+TGG - tig0036798:11501-11520 Msa1455990:intergenic 30.0%
! TAAAGAAGAAGCTCTGACTT+GGG + tig0036798:6303-6322 Msa1455990:CDS 35.0%
ACAACCTTGCAGACAATTAT+TGG - tig0036798:6888-6907 Msa1455990:intergenic 35.0%
GTTGTACTATTCTTGAAACC+AGG - tig0036798:7142-7161 Msa1455990:intergenic 35.0%
CGAAGAGAAAATGAAACCTA+AGG + tig0036798:7326-7345 Msa1455990:CDS 35.0%
GAATGCTCCTTAACTTATAC+AGG - tig0036798:7537-7556 Msa1455990:intergenic 35.0%
TCTCTGCAAAATACAAGAAC+AGG - tig0036798:7595-7614 Msa1455990:intergenic 35.0%
TTATGAATGAATGTCAGAGC+TGG + tig0036798:7786-7805 Msa1455990:intron 35.0%
TAAATACAAGGGGAAGAAAG+CGG - tig0036798:7883-7902 Msa1455990:intergenic 35.0%
! TATAGATGTCACACCTGTTT+TGG + tig0036798:7935-7954 Msa1455990:intron 35.0%
TTTGTGACGTAACACATCAT+CGG + tig0036798:7993-8012 Msa1455990:intron 35.0%
! CGTTTTCATTTGTGCAACAA+TGG + tig0036798:8044-8063 Msa1455990:intron 35.0%
GTACTGAAAATGAAAACGCT+TGG - tig0036798:8188-8207 Msa1455990:intergenic 35.0%
TCAAGGGATAAGGAAATTCA+TGG - tig0036798:8346-8365 Msa1455990:intergenic 35.0%
GAAACAACTGCAAGAAACAA+AGG + tig0036798:8379-8398 Msa1455990:intron 35.0%
AGCACTTGTCTTACTAAACT+TGG + tig0036798:8482-8501 Msa1455990:intron 35.0%
GCACTTGTCTTACTAAACTT+GGG + tig0036798:8483-8502 Msa1455990:intron 35.0%
CACTTGTCTTACTAAACTTG+GGG + tig0036798:8484-8503 Msa1455990:intron 35.0%
AACTAAGAATGAAGGGAAAG+AGG - tig0036798:8549-8568 Msa1455990:intergenic 35.0%
! TTTTTCTTGGCCCTTTTCTA+TGG + tig0036798:8733-8752 Msa1455990:intron 35.0%
TTCCTAAACCTTCTTGGAAA+GGG + tig0036798:9058-9077 Msa1455990:CDS 35.0%
ATAAAAGGCAAAGGAACTCT+AGG - tig0036798:9197-9216 Msa1455990:intergenic 35.0%
! AGAGTTCCTTTGCCTTTTAT+TGG + tig0036798:9197-9216 Msa1455990:intron 35.0%
CATTTGCCAATAAAAGGCAA+AGG - tig0036798:9206-9225 Msa1455990:intergenic 35.0%
TTCATGGTGTAAATGCTCAA+TGG + tig0036798:9314-9333 Msa1455990:CDS 35.0%
AGAAGAAGCAACGTTACATA+AGG + tig0036798:9344-9363 Msa1455990:CDS 35.0%
GTTACATAAGGCATGCAATT+CGG + tig0036798:9356-9375 Msa1455990:CDS 35.0%
TTACATAAGGCATGCAATTC+GGG + tig0036798:9357-9376 Msa1455990:CDS 35.0%
AACAATATGACGATGAACCA+AGG - tig0036798:9401-9420 Msa1455990:intergenic 35.0%
AGAACAGTGCAGAATGTATT+TGG - tig0036798:9451-9470 Msa1455990:intergenic 35.0%
AAATACATTCTGCACTGTTC+TGG + tig0036798:9450-9469 Msa1455990:CDS 35.0%
ACAATATTAGAGGCCATGTT+TGG - tig0036798:9800-9819 Msa1455990:intergenic 35.0%
AGAAAACAAGGGAGGATTAA+AGG - tig0036798:9855-9874 Msa1455990:intergenic 35.0%
CTTTACCTGGTAGAAAACAA+GGG - tig0036798:9866-9885 Msa1455990:intergenic 35.0%
TCTTTACCTGGTAGAAAACA+AGG - tig0036798:9867-9886 Msa1455990:intergenic 35.0%
ACATCATCAAGATCTTTACC+TGG - tig0036798:9879-9898 Msa1455990:intergenic 35.0%
!! TTCCGGGCTTTAAATCATAA+TGG - tig0036798:10004-10023 Msa1455990:intergenic 35.0%
!! ATTGCCAAAGTGACTGATTT+TGG + tig0036798:10047-10066 Msa1455990:CDS 35.0%
AAGACCAAAATCAGTCACTT+TGG - tig0036798:10054-10073 Msa1455990:intergenic 35.0%
!!! TTTTGGTCTTAGCAAGATAG+TGG + tig0036798:10064-10083 Msa1455990:CDS 35.0%
GTGATGAAGATCATTGTTGT+AGG + tig0036798:10149-10168 Msa1455990:intron 35.0%
! CACTTTACATTTCTGACTTG+TGG + tig0036798:10543-10562 Msa1455990:intron 35.0%
! ATTTCTGACTTGTGGAAAAC+AGG + tig0036798:10551-10570 Msa1455990:intron 35.0%
TTAGAAACAGTAGATCCAGA+GGG - tig0036798:10705-10724 Msa1455990:intergenic 35.0%
ATTAGAAACAGTAGATCCAG+AGG - tig0036798:10706-10725 Msa1455990:intergenic 35.0%
GGCAGTAATTACTAGAAAAG+GGG - tig0036798:10748-10767 Msa1455990:intergenic 35.0%
CAGGCAGTAATTACTAGAAA+AGG - tig0036798:10750-10769 Msa1455990:intergenic 35.0%
! CAGTGCCATTAAAATGATGT+TGG + tig0036798:10928-10947 Msa1455990:intron 35.0%
ACGTAAGCATGCTTATATCT+GGG - tig0036798:11143-11162 Msa1455990:intergenic 35.0%
AACGTAAGCATGCTTATATC+TGG - tig0036798:11144-11163 Msa1455990:intergenic 35.0%
GATATAAGCATGCTTACGTT+TGG + tig0036798:11144-11163 Msa1455990:intron 35.0%
GGTTGTCATTGCACTTTATA+TGG - tig0036798:11211-11230 Msa1455990:intergenic 35.0%
ACAGCTATATGCAAAACGAA+TGG + tig0036798:11256-11275 Msa1455990:intron 35.0%
ACACAGTAGAGATAATTGTC+AGG - tig0036798:11421-11440 Msa1455990:intergenic 35.0%
ACTGTGTGTACAATATTGTC+AGG + tig0036798:11434-11453 Msa1455990:intron 35.0%
! ATTGTCAGGATTTTATTCGG+CGG + tig0036798:11448-11467 Msa1455990:intron 35.0%
!! CTCATATCTCACTTTTACTC+AGG + tig0036798:11524-11543 Msa1455990:CDS 35.0%
! GTAAAGAAGAAGCTCTGACT+TGG + tig0036798:6302-6321 Msa1455990:CDS 40.0%
AGTAACTGTTAGGATGGTTG+TGG + tig0036798:6387-6406 Msa1455990:intron 40.0%
!!! TGTTGGTTGTTTTGGTGTGT+TGG + tig0036798:6574-6593 Msa1455990:intron 40.0%
!!! TTTTGGTGTGTTGGCTGTTT+TGG + tig0036798:6583-6602 Msa1455990:intron 40.0%
!!! TTTGGTGTGTTGGCTGTTTT+GGG + tig0036798:6584-6603 Msa1455990:intron 40.0%
! AAAGCATTAGCGACGTCATT+GGG - tig0036798:6712-6731 Msa1455990:intergenic 40.0%
! TAAAGCATTAGCGACGTCAT+TGG - tig0036798:6713-6732 Msa1455990:intergenic 40.0%
ACGTTCAAAAGTTGCTCAGT+TGG + tig0036798:6810-6829 Msa1455990:CDS 40.0%
! AGCTTTTTATCGCACAGTGT+TGG + tig0036798:7363-7382 Msa1455990:intron 40.0%
TCTTGTGTCGTGATAGAATC+AGG - tig0036798:7401-7420 Msa1455990:intergenic 40.0%
TGCAAAATACAAGAACAGGC+TGG - tig0036798:7591-7610 Msa1455990:intergenic 40.0%
! AACTGTCGTATCTGAGATCT+GGG + tig0036798:7809-7828 Msa1455990:CDS 40.0%
ACAACTGCAAGAAACAAAGG+AGG + tig0036798:8382-8401 Msa1455990:CDS 40.0%
ATGGTTGAAGATAAGGGTGA+TGG + tig0036798:8752-8771 Msa1455990:intron 40.0%
GGAAGATATTCTCATTCACG+AGG + tig0036798:8799-8818 Msa1455990:CDS 40.0%
TCGTGAAATGAAACGCATAC+TGG + tig0036798:8982-9001 Msa1455990:CDS 40.0%
TACGTCTTCCTAAACCTTCT+TGG + tig0036798:9052-9071 Msa1455990:CDS 40.0%
CTTCCTAAACCTTCTTGGAA+AGG + tig0036798:9057-9076 Msa1455990:CDS 40.0%
!!! GCAAAGGAACTCTAGGATTT+TGG - tig0036798:9190-9209 Msa1455990:intergenic 40.0%
TATGTTGCATGCAAGCTTCA+TGG + tig0036798:9298-9317 Msa1455990:CDS 40.0%
!!! ACTGTTCTGGAGTTTTGTAG+TGG + tig0036798:9463-9482 Msa1455990:CDS 40.0%
TGGTAGATTACGAGTCTGTT+TGG + tig0036798:9537-9556 Msa1455990:intron 40.0%
GCTCATTTCGATAACTCTCT+AGG + tig0036798:9639-9658 Msa1455990:intron 40.0%
AACAAGGGAGGATTAAAGGA+AGG - tig0036798:9851-9870 Msa1455990:intergenic 40.0%
!! AAGATAGTGGAGAATGACGT+GGG + tig0036798:10077-10096 Msa1455990:CDS 40.0%
TTTACCTTGGATGATATGCG+AGG - tig0036798:10362-10381 Msa1455990:intergenic 40.0%
TTGTCAGTCATTATGGTCAG+TGG + tig0036798:10438-10457 Msa1455990:intron 40.0%
ATTATGGTCAGTGGACATTC+TGG + tig0036798:10447-10466 Msa1455990:intron 40.0%
TTATGGTCAGTGGACATTCT+GGG + tig0036798:10448-10467 Msa1455990:intron 40.0%
GCCTGTTGCTAATTGTTCTT+TGG + tig0036798:10765-10784 Msa1455990:intron 40.0%
GCCAAAGAACAATTAGCAAC+AGG - tig0036798:10769-10788 Msa1455990:intergenic 40.0%
! TTAATGGCACTGAGATATGG+AGG - tig0036798:10920-10939 Msa1455990:intergenic 40.0%
CGTAAGCATGCTTATATCTG+GGG - tig0036798:11142-11161 Msa1455990:intergenic 40.0%
CTGCATCATATTCTCCTCTA+AGG + tig0036798:11325-11344 Msa1455990:intron 40.0%
AAATGATGAGTGCTCCTTAG+AGG - tig0036798:11342-11361 Msa1455990:intergenic 40.0%
!!! AGGAGCACTCATCATTTTAG+AGG + tig0036798:11345-11364 Msa1455990:intron 40.0%
AACTGTTAGGATGGTTGTGG+CGG + tig0036798:6390-6409 Msa1455990:intron 45.0%
TTAGCGACGTCATTGGGATA+TGG - tig0036798:6706-6725 Msa1455990:intergenic 45.0%
CTGCAAGGTTGTGATTCAGT+AGG + tig0036798:6896-6915 Msa1455990:intron 45.0%
CTTGCTGAAGTCAGTGTCAA+AGG + tig0036798:7632-7651 Msa1455990:CDS 45.0%
AGGTTGAGAGACAAGAAGCA+AGG + tig0036798:7652-7671 Msa1455990:CDS 45.0%
! GAACTGTCGTATCTGAGATC+TGG + tig0036798:7808-7827 Msa1455990:CDS 45.0%
! GTATCTGAGATCTGGGAAGA+TGG + tig0036798:7816-7835 Msa1455990:CDS 45.0%
AGCGGTTAGACATACAAGCT+GGG - tig0036798:7865-7884 Msa1455990:intergenic 45.0%
AAGCGGTTAGACATACAAGC+TGG - tig0036798:7866-7885 Msa1455990:intergenic 45.0%
CAAACTGCTGTCATAGGCAA+TGG - tig0036798:8312-8331 Msa1455990:intergenic 45.0%
CTAACGCAAACTGCTGTCAT+AGG - tig0036798:8318-8337 Msa1455990:intergenic 45.0%
TCAACCTATCGGATACTGCT+AGG + tig0036798:8661-8680 Msa1455990:intron 45.0%
ATAGCCTAGCAGTATCCGAT+AGG - tig0036798:8668-8687 Msa1455990:intergenic 45.0%
! CTCGACTTGCCAGCATTAAA+CGG + tig0036798:8834-8853 Msa1455990:CDS 45.0%
! TCGACTTGCCAGCATTAAAC+GGG + tig0036798:8835-8854 Msa1455990:CDS 45.0%
GCAACTTACCCGTTTAATGC+TGG - tig0036798:8846-8865 Msa1455990:intergenic 45.0%
CACCTCTACGAACTAGAGAA+GGG + tig0036798:8950-8969 Msa1455990:CDS 45.0%
! TTCCCTTCTCTAGTTCGTAG+AGG - tig0036798:8955-8974 Msa1455990:intergenic 45.0%
TCTACGAACTAGAGAAGGGA+AGG + tig0036798:8954-8973 Msa1455990:CDS 45.0%
GGTTTAGGAAGACGTAACGA+TGG - tig0036798:9048-9067 Msa1455990:intergenic 45.0%
CTCCCTTTCCAAGAAGGTTT+AGG - tig0036798:9063-9082 Msa1455990:intergenic 45.0%
CTAAACCTTCTTGGAAAGGG+AGG + tig0036798:9061-9080 Msa1455990:CDS 45.0%
TATAGCCTCCCTTTCCAAGA+AGG - tig0036798:9069-9088 Msa1455990:intergenic 45.0%
!! TTTCCAGCAGGCTTTTGACT+TGG + tig0036798:9264-9283 Msa1455990:intron 45.0%
!!! ATCCTCCCTTGTTTTCTACC+AGG + tig0036798:9858-9877 Msa1455990:intron 45.0%
TACCTGGTAGAAAACAAGGG+AGG - tig0036798:9863-9882 Msa1455990:intergenic 45.0%
AACGACTTTAGCCTCGTTCT+CGG - tig0036798:9925-9944 Msa1455990:intergenic 45.0%
CATGAATGAAAGAACGCCGA+AGG + tig0036798:9974-9993 Msa1455990:CDS 45.0%
!! CAAGATAGTGGAGAATGACG+TGG + tig0036798:10076-10095 Msa1455990:CDS 45.0%
GGATGTAAGTTCCATACCCT+GGG - tig0036798:10105-10124 Msa1455990:intergenic 45.0%
GGTATGGAACTTACATCCCA+GGG + tig0036798:10107-10126 Msa1455990:CDS 45.0%
! TTGCTCTGCTCAAAGCATTC+AGG - tig0036798:10335-10354 Msa1455990:intergenic 45.0%
!! ACATTCTGGGACTTCTGTCA+TGG + tig0036798:10461-10480 Msa1455990:intron 45.0%
!! GTGGAAAACAGGTTGATGTC+TGG + tig0036798:10562-10581 Msa1455990:intron 45.0%
CACGAAGTAGAATTTCCCTC+TGG + tig0036798:10687-10706 Msa1455990:CDS 45.0%
! TAGGCTTGAGCGGAGTTTTA+CGG + tig0036798:11067-11086 Msa1455990:intron 45.0%
GTGTCTTACATATGACCAGG+CGG + tig0036798:11470-11489 Msa1455990:CDS 45.0%
!!! TTTTCATAATATTTTTATTT+TGG + tig0036798:7746-7765 Msa1455990:intron 5.0%
!!! TTTCATAATATTTTTATTTT+GGG + tig0036798:7747-7766 Msa1455990:intron 5.0%
!! AGAAGAAGCTCTGACTTGGG+AGG + tig0036798:6306-6325 Msa1455990:CDS 50.0%
!! GAAGAAGCTCTGACTTGGGA+GGG + tig0036798:6307-6326 Msa1455990:CDS 50.0%
GCGTTGCTTAAAAGCTGCAG+CGG + tig0036798:6340-6359 Msa1455990:CDS 50.0%
ACTGTTAGGATGGTTGTGGC+GGG + tig0036798:6391-6410 Msa1455990:intron 50.0%
CGACAGAATTCGTCGAGACT+TGG + tig0036798:7684-7703 Msa1455990:CDS 50.0%
TGAGATCTGGGAAGATGGTC+CGG + tig0036798:7821-7840 Msa1455990:CDS 50.0%
GCATGCATATCCTTCAACGC+CGG - tig0036798:7843-7862 Msa1455990:intergenic 50.0%
!! GGGTGATGGAATAGATGCAG+AGG + tig0036798:8766-8785 Msa1455990:CDS 50.0%
GATGGAATAGATGCAGAGGC+TGG + tig0036798:8770-8789 Msa1455990:CDS 50.0%
AGATGCAGAGGCTGGATTGT+CGG + tig0036798:8778-8797 Msa1455990:CDS 50.0%
! CCTTCTCTAGTTCGTAGAGG+TGG - tig0036798:8952-8971 Msa1455990:intergenic 50.0%
CCACCTCTACGAACTAGAGA+AGG + tig0036798:8949-8968 Msa1455990:CDS 50.0%
AGGCTATAGCGAGGTGTACA+AGG + tig0036798:9081-9100 Msa1455990:CDS 50.0%
! ACCTATTTTGCCCGAGAACG+AGG + tig0036798:9911-9930 Msa1455990:intron 50.0%
ACGACTTTAGCCTCGTTCTC+GGG - tig0036798:9924-9943 Msa1455990:intergenic 50.0%
GGGATGTAAGTTCCATACCC+TGG - tig0036798:10106-10125 Msa1455990:intergenic 50.0%
GGGTATGGAACTTACATCCC+AGG + tig0036798:10106-10125 Msa1455990:CDS 50.0%
CCAATATGTTCCAGCACCCT+GGG - tig0036798:10126-10145 Msa1455990:intergenic 50.0%
ACCAATATGTTCCAGCACCC+TGG - tig0036798:10127-10146 Msa1455990:intergenic 50.0%
! CTCTGCTCAAAGCATTCAGG+AGG - tig0036798:10332-10351 Msa1455990:intergenic 50.0%
GACACCTCGCATATCATCCA+AGG + tig0036798:10355-10374 Msa1455990:CDS 50.0%
TGTGTTTGGTCATGCCCGAA+AGG - tig0036798:10630-10649 Msa1455990:intergenic 50.0%
GCGGTGTCTTACATATGACC+AGG + tig0036798:11467-11486 Msa1455990:CDS 50.0%
!! TCTGACTTGGGAGGGACTGA+AGG + tig0036798:6315-6334 Msa1455990:CDS 55.0%
!! TGGTTGTGGCGGGCTATGTA+TGG + tig0036798:6401-6420 Msa1455990:intron 55.0%
TTTGGGTGCGCAAGACTGCT+TGG + tig0036798:6601-6620 Msa1455990:intron 55.0%
GCGACGTCATTGGGATATGG+TGG - tig0036798:6703-6722 Msa1455990:intergenic 55.0%
CACGACACAAGACTCCTACG+TGG + tig0036798:7409-7428 Msa1455990:intron 55.0%
TGGAAAGGGAGGCTATAGCG+AGG + tig0036798:9072-9091 Msa1455990:CDS 55.0%
CCACCAAGTCAAAAGCCTGC+TGG - tig0036798:9270-9289 Msa1455990:intergenic 55.0%
!!! CCAGCAGGCTTTTGACTTGG+TGG + tig0036798:9267-9286 Msa1455990:intron 55.0%
GCCTCGTTCTCGGGCAAAAT+AGG - tig0036798:9915-9934 Msa1455990:intergenic 55.0%
GAGAATGACGTGGGATCCCA+GGG + tig0036798:10086-10105 Msa1455990:CDS 55.0%
GAACTTACATCCCAGGGTGC+TGG + tig0036798:10113-10132 Msa1455990:CDS 55.0%
!! CCCAGGGTGCTGGAACATAT+TGG + tig0036798:10123-10142 Msa1455990:CDS 55.0%
!! CAGGTTGATGTCTGGTCTGC+TGG + tig0036798:10570-10589 Msa1455990:intron 55.0%
CTCTTCGGCAGACGTCCTTT+CGG + tig0036798:10612-10631 Msa1455990:CDS 55.0%
TCTTCGGCAGACGTCCTTTC+GGG + tig0036798:10613-10632 Msa1455990:CDS 55.0%
ATACATCTGGTCTCTCCGCC+TGG - tig0036798:11488-11507 Msa1455990:intergenic 55.0%
! GGAAGATGGTCCGGCGTTGA+AGG + tig0036798:7830-7849 Msa1455990:CDS 60.0%
GGAGAATGACGTGGGATCCC+AGG + tig0036798:10085-10104 Msa1455990:CDS 60.0%
TGACGTGGGATCCCAGGGTA+TGG + tig0036798:10091-10110 Msa1455990:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0036798 gene 6289 11551 6289 ID=Msa1455990;Name=Msa1455990
tig0036798 mRNA 6289 11551 6289 ID=Msa1455990-mRNA-1;Parent=Msa1455990;Name=Msa1455990-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.08|0|1|0.91|0.92|13|0|477
tig0036798 exon 6289 6363 6289 ID=Msa1455990-mRNA-1:exon:20507;Parent=Msa1455990-mRNA-1
tig0036798 exon 6793 6879 6793 ID=Msa1455990-mRNA-1:exon:20508;Parent=Msa1455990-mRNA-1
tig0036798 exon 7303 7347 7303 ID=Msa1455990-mRNA-1:exon:20509;Parent=Msa1455990-mRNA-1
tig0036798 exon 7612 7721 7612 ID=Msa1455990-mRNA-1:exon:20510;Parent=Msa1455990-mRNA-1
tig0036798 exon 7803 7869 7803 ID=Msa1455990-mRNA-1:exon:20511;Parent=Msa1455990-mRNA-1
tig0036798 exon 8380 8446 8380 ID=Msa1455990-mRNA-1:exon:20512;Parent=Msa1455990-mRNA-1
tig0036798 exon 8762 8856 8762 ID=Msa1455990-mRNA-1:exon:20513;Parent=Msa1455990-mRNA-1
tig0036798 exon 8923 9102 8923 ID=Msa1455990-mRNA-1:exon:20514;Parent=Msa1455990-mRNA-1
tig0036798 exon 9271 9484 9271 ID=Msa1455990-mRNA-1:exon:20515;Parent=Msa1455990-mRNA-1
tig0036798 exon 9964 10144 9964 ID=Msa1455990-mRNA-1:exon:20516;Parent=Msa1455990-mRNA-1
tig0036798 exon 10322 10376 10322 ID=Msa1455990-mRNA-1:exon:20517;Parent=Msa1455990-mRNA-1
tig0036798 exon 10573 10734 10573 ID=Msa1455990-mRNA-1:exon:20518;Parent=Msa1455990-mRNA-1
tig0036798 exon 11456 11551 11456 ID=Msa1455990-mRNA-1:exon:20519;Parent=Msa1455990-mRNA-1
tig0036798 CDS 6289 6363 6289 ID=Msa1455990-mRNA-1:cds;Parent=Msa1455990-mRNA-1
tig0036798 CDS 6793 6879 6793 ID=Msa1455990-mRNA-1:cds;Parent=Msa1455990-mRNA-1
tig0036798 CDS 7303 7347 7303 ID=Msa1455990-mRNA-1:cds;Parent=Msa1455990-mRNA-1
tig0036798 CDS 7612 7721 7612 ID=Msa1455990-mRNA-1:cds;Parent=Msa1455990-mRNA-1
tig0036798 CDS 7803 7869 7803 ID=Msa1455990-mRNA-1:cds;Parent=Msa1455990-mRNA-1
tig0036798 CDS 8380 8446 8380 ID=Msa1455990-mRNA-1:cds;Parent=Msa1455990-mRNA-1
tig0036798 CDS 8762 8856 8762 ID=Msa1455990-mRNA-1:cds;Parent=Msa1455990-mRNA-1
tig0036798 CDS 8923 9102 8923 ID=Msa1455990-mRNA-1:cds;Parent=Msa1455990-mRNA-1
tig0036798 CDS 9271 9484 9271 ID=Msa1455990-mRNA-1:cds;Parent=Msa1455990-mRNA-1
tig0036798 CDS 9964 10144 9964 ID=Msa1455990-mRNA-1:cds;Parent=Msa1455990-mRNA-1
tig0036798 CDS 10322 10376 10322 ID=Msa1455990-mRNA-1:cds;Parent=Msa1455990-mRNA-1
tig0036798 CDS 10573 10734 10573 ID=Msa1455990-mRNA-1:cds;Parent=Msa1455990-mRNA-1
tig0036798 CDS 11456 11551 11456 ID=Msa1455990-mRNA-1:cds;Parent=Msa1455990-mRNA-1
Gene Sequence

>Msa1455990

TTGATTGAGGAGGGTAAAGAAGAAGCTCTGACTTGGGAGGGACTGAAGGATGCGTTGCTTAAAAGCTGCAGCGGCGGGGAGATTGCATCTCTACGTTCAAAAGTTGCTCAGTTGGAGAGAGACTTACGTAAAGCTAAGCAAGAAACCTCTGATAAAGAAAAGGAACTGAAGCAACTGAAAGATACCGAAGAGAAAATGAAACCTAAGAGAACAGAAACAATATATGACTTGCTGAAGTCAGTGTCAAAGGTTGAGAGACAAGAAGCAAGGCTAAAAGCACGACAGAATTCGTCGAGACTTGGAAATGTTTTAATCAGAGCTGGAACTGTCGTATCTGAGATCTGGGAAGATGGTCCGGCGTTGAAGGATATGCATGCCCAGCTTAAACAACTGCAAGAAACAAAGGAGGATATTGAGCAGCAACACAATTTATTCAAGAAAAAACAATCTGATAAGGGTGATGGAATAGATGCAGAGGCTGGATTGTCGGAAGATATTCTCATTCACGAGGAAATCTTTAAGTCTCGACTTGCCAGCATTAAACGGGAAGAAGAAATTGCTTTGCGAGAGTGCCACCTCTACGAACTAGAGAAGGGAAGGCTAATTCGTGAAATGAAACGCATACTGGATGAAGATGCTTCACAGTTCAACAACTTTCAGATTTTAAACCATCGTTACGTCTTCCTAAACCTTCTTGGAAAGGGAGGCTATAGCGAGGTGTACAAGCAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCATGCAAGCTTCATGGTGTAAATGCTCAATGGAGTGAAGAGAAGAAGCAACGTTACATAAGGCATGCAATTCGGGAGTATAATATTCACAAGACCTTGGTTCATCGTCATATTGTTCGTTTATGGGACGTCTTTAAGATTGATCCAAATACATTCTGCACTGTTCTGGAGTTTTGTAGTGCCCTTGTTTACATGAATGAAAGAACGCCGAAGGTTATCCATTATGATTTAAAGCCCGGAAATGTTTTGTTTGATGAGCTTGGTATTGCCAAAGTGACTGATTTTGGTCTTAGCAAGATAGTGGAGAATGACGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGTGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCAGAGCAAGACACCTCGCATATCATCCAAGGTTGATGTCTGGTCTGCTGGTATTTGTTTTTATTACATGCTCTTCGGCAGACGTCCTTTCGGGCATGACCAAACACAACAGAGAATATTTCTTGAGCACACAATTATTAATGCACACGAAGTAGAATTTCCCTCTGGATCTACTGTTTCTAATAAGGCTAAGGATTTTATTCGGCGGTGTCTTACATATGACCAGGCGGAGAGACCAGATGTATTAACAATTGCTCAAGACTCATATCTCACTTTTACTCAGGAATAG
Protein sequence

>Msa1455990

LIEEGKEEALTWEGLKDALLKSCSGGEIASLRSKVAQLERDLRKAKQETSDKEKELKQLKDTEEKMKPKRTETIYDLLKSVSKVERQEARLKARQNSSRLGNVLIRAGTVVSEIWEDGPALKDMHAQLKQLQETKEDIEQQHNLFKKKQSDKGDGIDAEAGLSEDILIHEEIFKSRLASIKREEEIALRECHLYELEKGRLIREMKRILDEDASQFNNFQILNHRYVFLNLLGKGGYSEVYKQAFDLVEHRYVACKLHGVNAQWSEEKKQRYIRHAIREYNIHKTLVHRHIVRLWDVFKIDPNTFCTVLEFCSALVYMNERTPKVIHYDLKPGNVLFDELGIAKVTDFGLSKIVENDVGSQGMELTSQGAGTYWYLPPECFEQSKTPRISSKVDVWSAGICFYYMLFGRRPFGHDQTQQRIFLEHTIINAHEVEFPSGSTVSNKAKDFIRRCLTYDQAERPDVLTIAQDSYLTFTQE*