Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456530 | XP_027334564.1 | 67.337 | 199 | 43 | 2 | 16 | 211 | 108 | 287 | 2.71e-79 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456530 | sp|Q6LA43|APRR2_ARATH | 55.670 | 97 | 21 | 3 | 116 | 211 | 293 | 368 | 3.11e-24 | 102 |
| Msa1456530 | sp|Q6LA43|APRR2_ARATH | 62.500 | 72 | 25 | 1 | 16 | 87 | 116 | 185 | 7.99e-20 | 90.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456530 | A0A072UQC7 | 100.000 | 55 | 0 | 0 | 16 | 70 | 109 | 163 | 5.30e-25 | 112 |
| Msa1456530 | A0A072UQC7 | 72.050 | 161 | 25 | 2 | 51 | 211 | 241 | 381 | 2.30e-67 | 226 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1456530 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456530 | MtrunA17_Chr4g0054981 | 72.050 | 161 | 25 | 2 | 51 | 211 | 241 | 381 | 4.83e-71 | 225 |
| Msa1456530 | MtrunA17_Chr4g0054981 | 100.000 | 55 | 0 | 0 | 16 | 70 | 109 | 163 | 1.05e-28 | 112 |
| Msa1456530 | MtrunA17_Chr5g0400241 | 53.793 | 145 | 47 | 2 | 67 | 211 | 258 | 382 | 5.49e-37 | 135 |
| Msa1456530 | MtrunA17_Chr5g0400241 | 60.674 | 89 | 30 | 1 | 16 | 104 | 109 | 192 | 4.57e-24 | 99.4 |
| Msa1456530 | MtrunA17_Chr4g0040481 | 46.809 | 94 | 31 | 1 | 118 | 211 | 155 | 229 | 3.94e-23 | 95.9 |
| Msa1456530 | MtrunA17_Chr2g0324891 | 49.412 | 85 | 24 | 1 | 118 | 202 | 158 | 223 | 3.40e-22 | 93.2 |
| Msa1456530 | MtrunA17_Chr3g0137101 | 35.366 | 164 | 93 | 4 | 17 | 179 | 106 | 257 | 1.42e-20 | 89.4 |
| Msa1456530 | MtrunA17_Chr4g0074421 | 34.161 | 161 | 80 | 4 | 17 | 174 | 50 | 187 | 1.09e-19 | 83.2 |
| Msa1456530 | MtrunA17_Chr4g0074401 | 36.364 | 154 | 82 | 2 | 17 | 170 | 115 | 252 | 1.85e-19 | 85.9 |
| Msa1456530 | MtrunA17_Chr2g0304841 | 37.821 | 156 | 86 | 3 | 17 | 170 | 116 | 262 | 2.75e-19 | 85.5 |
| Msa1456530 | MtrunA17_Chr1g0161431 | 34.810 | 158 | 82 | 3 | 17 | 170 | 109 | 249 | 5.13e-19 | 84.7 |
| Msa1456530 | MtrunA17_Chr4g0009851 | 26.415 | 212 | 91 | 4 | 14 | 210 | 105 | 266 | 1.37e-18 | 82.0 |
| Msa1456530 | MtrunA17_Chr4g0067981 | 34.483 | 174 | 93 | 4 | 17 | 187 | 129 | 284 | 4.37e-18 | 82.0 |
| Msa1456530 | MtrunA17_Chr4g0074411 | 37.419 | 155 | 76 | 4 | 17 | 170 | 116 | 250 | 1.48e-17 | 80.5 |
| Msa1456530 | MtrunA17_Chr2g0294911 | 33.537 | 164 | 69 | 4 | 17 | 170 | 127 | 260 | 6.72e-17 | 78.6 |
| Msa1456530 | MtrunA17_Chr8g0376881 | 33.929 | 168 | 86 | 4 | 17 | 180 | 123 | 269 | 3.65e-16 | 76.3 |
| Msa1456530 | MtrunA17_Chr4g0009901 | 30.573 | 157 | 66 | 2 | 14 | 170 | 104 | 217 | 9.38e-16 | 73.9 |
| Msa1456530 | MtrunA17_Chr4g0009981 | 25.472 | 212 | 93 | 4 | 14 | 210 | 52 | 213 | 1.38e-15 | 73.2 |
| Msa1456530 | MtrunA17_Chr3g0123131 | 34.524 | 168 | 89 | 6 | 17 | 181 | 111 | 260 | 2.57e-15 | 73.9 |
| Msa1456530 | MtrunA17_Chr7g0255711 | 60.784 | 51 | 20 | 0 | 120 | 170 | 90 | 140 | 2.34e-14 | 70.1 |
| Msa1456530 | MtrunA17_Chr4g0031961 | 60.784 | 51 | 20 | 0 | 120 | 170 | 130 | 180 | 3.51e-14 | 70.1 |
| Msa1456530 | MtrunA17_Chr4g0009991 | 28.395 | 162 | 72 | 3 | 17 | 178 | 7 | 124 | 1.29e-13 | 65.1 |
| Msa1456530 | MtrunA17_Chr1g0149841 | 31.098 | 164 | 96 | 4 | 17 | 179 | 103 | 250 | 1.89e-13 | 68.6 |
| Msa1456530 | MtrunA17_Chr3g0134461 | 57.407 | 54 | 23 | 0 | 119 | 172 | 141 | 194 | 4.58e-13 | 65.1 |
| Msa1456530 | MtrunA17_Chr7g0275401 | 31.210 | 157 | 93 | 4 | 14 | 170 | 100 | 241 | 2.96e-12 | 64.3 |
| Msa1456530 | MtrunA17_Chr3g0134481 | 55.556 | 45 | 20 | 0 | 126 | 170 | 137 | 181 | 3.28e-12 | 62.8 |
| Msa1456530 | MtrunA17_Chr1g0190301 | 40.741 | 108 | 45 | 3 | 66 | 170 | 134 | 225 | 5.73e-12 | 63.9 |
| Msa1456530 | MtrunA17_Chr7g0275891 | 27.604 | 192 | 78 | 4 | 17 | 179 | 104 | 263 | 8.12e-12 | 63.5 |
| Msa1456530 | MtrunA17_Chr1g0149851 | 28.899 | 218 | 115 | 7 | 17 | 210 | 103 | 304 | 1.21e-11 | 63.2 |
| Msa1456530 | MtrunA17_Chr1g0149831 | 31.098 | 164 | 93 | 5 | 17 | 179 | 40 | 184 | 1.48e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456530 | AT4G18020.3 | 55.670 | 97 | 21 | 3 | 116 | 211 | 293 | 368 | 3.16e-25 | 102 |
| Msa1456530 | AT4G18020.3 | 62.500 | 72 | 25 | 1 | 16 | 87 | 116 | 185 | 8.13e-21 | 90.1 |
| Msa1456530 | AT4G18020.2 | 55.670 | 97 | 21 | 3 | 116 | 211 | 293 | 368 | 3.16e-25 | 102 |
| Msa1456530 | AT4G18020.2 | 62.500 | 72 | 25 | 1 | 16 | 87 | 116 | 185 | 8.13e-21 | 90.1 |
| Msa1456530 | AT4G18020.1 | 55.670 | 97 | 21 | 3 | 116 | 211 | 293 | 368 | 3.16e-25 | 102 |
| Msa1456530 | AT4G18020.1 | 62.500 | 72 | 25 | 1 | 16 | 87 | 116 | 185 | 8.13e-21 | 90.1 |
| Msa1456530 | AT4G18020.6 | 55.670 | 97 | 21 | 3 | 116 | 211 | 293 | 368 | 3.16e-25 | 102 |
| Msa1456530 | AT4G18020.6 | 62.500 | 72 | 25 | 1 | 16 | 87 | 116 | 185 | 8.13e-21 | 90.1 |
| Msa1456530 | AT4G18020.9 | 55.670 | 97 | 21 | 3 | 116 | 211 | 293 | 368 | 3.16e-25 | 102 |
| Msa1456530 | AT4G18020.9 | 62.500 | 72 | 25 | 1 | 16 | 87 | 116 | 185 | 8.13e-21 | 90.1 |
| Msa1456530 | AT4G18020.8 | 55.670 | 97 | 21 | 3 | 116 | 211 | 293 | 368 | 3.34e-25 | 102 |
| Msa1456530 | AT4G18020.8 | 62.500 | 72 | 25 | 1 | 16 | 87 | 116 | 185 | 7.27e-21 | 90.1 |
| Msa1456530 | AT4G18020.11 | 55.670 | 97 | 21 | 3 | 116 | 211 | 293 | 368 | 3.34e-25 | 102 |
| Msa1456530 | AT4G18020.11 | 62.500 | 72 | 25 | 1 | 16 | 87 | 116 | 185 | 7.27e-21 | 90.1 |
| Msa1456530 | AT4G18020.4 | 55.670 | 97 | 21 | 3 | 116 | 211 | 293 | 368 | 3.34e-25 | 102 |
| Msa1456530 | AT4G18020.4 | 62.500 | 72 | 25 | 1 | 16 | 87 | 116 | 185 | 7.27e-21 | 90.1 |
| Msa1456530 | AT4G18020.5 | 55.670 | 97 | 21 | 3 | 116 | 211 | 293 | 368 | 3.34e-25 | 102 |
| Msa1456530 | AT4G18020.5 | 62.500 | 72 | 25 | 1 | 16 | 87 | 116 | 185 | 7.27e-21 | 90.1 |
| Msa1456530 | AT4G18020.10 | 55.670 | 97 | 21 | 3 | 116 | 211 | 293 | 368 | 3.34e-25 | 102 |
| Msa1456530 | AT4G18020.10 | 62.500 | 72 | 25 | 1 | 16 | 87 | 116 | 185 | 7.27e-21 | 90.1 |
| Msa1456530 | AT4G18020.7 | 55.670 | 97 | 21 | 3 | 116 | 211 | 293 | 368 | 3.34e-25 | 102 |
| Msa1456530 | AT4G18020.7 | 62.500 | 72 | 25 | 1 | 16 | 87 | 116 | 185 | 7.27e-21 | 90.1 |
| Msa1456530 | AT2G20570.1 | 52.941 | 85 | 21 | 1 | 118 | 202 | 150 | 215 | 1.78e-22 | 94.4 |
| Msa1456530 | AT5G44190.2 | 50.538 | 93 | 27 | 1 | 119 | 211 | 145 | 218 | 1.93e-22 | 93.6 |
| Msa1456530 | AT5G44190.1 | 50.538 | 93 | 27 | 1 | 119 | 211 | 145 | 218 | 2.04e-22 | 94.0 |
| Msa1456530 | AT3G16857.2 | 39.873 | 158 | 89 | 3 | 17 | 170 | 131 | 286 | 8.21e-21 | 90.5 |
| Msa1456530 | AT2G20570.2 | 45.872 | 109 | 40 | 1 | 94 | 202 | 142 | 231 | 9.14e-21 | 89.7 |
| Msa1456530 | AT5G58080.1 | 37.419 | 155 | 74 | 5 | 17 | 170 | 111 | 243 | 1.06e-20 | 90.1 |
| Msa1456530 | AT3G16857.1 | 39.873 | 158 | 89 | 3 | 17 | 170 | 131 | 286 | 1.17e-20 | 90.1 |
| Msa1456530 | AT3G16857.3 | 38.378 | 185 | 98 | 6 | 17 | 189 | 61 | 241 | 1.36e-20 | 89.7 |
| Msa1456530 | AT2G01760.3 | 37.126 | 167 | 88 | 5 | 17 | 179 | 41 | 194 | 6.33e-20 | 86.3 |
| Msa1456530 | AT2G01760.2 | 37.126 | 167 | 88 | 5 | 17 | 179 | 134 | 287 | 7.30e-20 | 87.0 |
| Msa1456530 | AT2G01760.1 | 37.126 | 167 | 88 | 5 | 17 | 179 | 106 | 259 | 9.00e-20 | 86.7 |
| Msa1456530 | AT2G25180.1 | 35.838 | 173 | 72 | 4 | 17 | 179 | 111 | 254 | 4.07e-19 | 85.5 |
| Msa1456530 | AT2G40970.1 | 46.835 | 79 | 42 | 0 | 92 | 170 | 76 | 154 | 1.38e-16 | 76.3 |
| Msa1456530 | AT4G31920.1 | 32.941 | 170 | 82 | 1 | 1 | 170 | 95 | 232 | 2.96e-16 | 77.0 |
| Msa1456530 | AT3G10760.1 | 44.706 | 85 | 47 | 0 | 86 | 170 | 70 | 154 | 4.89e-16 | 75.9 |
| Msa1456530 | AT5G49240.1 | 32.500 | 160 | 89 | 5 | 17 | 174 | 136 | 278 | 2.16e-15 | 73.6 |
| Msa1456530 | AT5G05090.1 | 49.275 | 69 | 35 | 0 | 102 | 170 | 62 | 130 | 7.76e-15 | 71.6 |
| Msa1456530 | AT5G59570.2 | 60.784 | 51 | 20 | 0 | 120 | 170 | 140 | 190 | 1.60e-14 | 71.2 |
| Msa1456530 | AT5G59570.1 | 60.784 | 51 | 20 | 0 | 120 | 170 | 140 | 190 | 1.60e-14 | 71.2 |
| Msa1456530 | AT3G46640.2 | 60.784 | 51 | 20 | 0 | 120 | 170 | 143 | 193 | 3.10e-14 | 70.5 |
| Msa1456530 | AT3G46640.1 | 60.784 | 51 | 20 | 0 | 120 | 170 | 143 | 193 | 3.10e-14 | 70.5 |
| Msa1456530 | AT3G46640.3 | 60.784 | 51 | 20 | 0 | 120 | 170 | 143 | 193 | 3.31e-14 | 70.5 |
| Msa1456530 | AT3G62670.1 | 34.337 | 166 | 70 | 7 | 14 | 170 | 130 | 265 | 5.45e-14 | 70.5 |
| Msa1456530 | AT1G25550.2 | 44.737 | 76 | 34 | 3 | 117 | 191 | 206 | 274 | 2.24e-12 | 64.7 |
| Msa1456530 | AT1G25550.1 | 43.210 | 81 | 25 | 3 | 117 | 196 | 206 | 266 | 8.43e-12 | 63.5 |
| Msa1456530 | AT5G07210.2 | 30.488 | 164 | 103 | 3 | 17 | 170 | 109 | 271 | 2.83e-11 | 62.4 |
| Msa1456530 | AT5G07210.1 | 30.488 | 164 | 103 | 3 | 17 | 170 | 117 | 279 | 3.18e-11 | 62.4 |
Find 35 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTATTCCTTCTCGAATAT+TGG | 0.160903 | tig0037509:-3017 | Msa1456530:CDS |
| AGGACAAGCTCAGAAATATT+TGG | 0.362029 | tig0037509:-3615 | Msa1456530:CDS |
| TTGTTTAGAACCTTCACATT+TGG | 0.411730 | tig0037509:+3348 | Msa1456530:intergenic |
| CGAAGCAGGATGATCGGAAA+TGG | 0.452472 | tig0037509:-2764 | Msa1456530:CDS |
| ACCTTCACATTTGGTAATTG+TGG | 0.453921 | tig0037509:+3357 | Msa1456530:intergenic |
| AATGTGAGATAAAAGCTAAT+CGG | 0.462021 | tig0037509:-3275 | Msa1456530:CDS |
| GAGACATATCTTACCGAAGC+AGG | 0.475105 | tig0037509:-2778 | Msa1456530:CDS |
| GAGGCTACAGATTCCTTGAC+AGG | 0.481302 | tig0037509:+3444 | Msa1456530:intergenic |
| CATTTCCGATCATCCTGCTT+CGG | 0.484186 | tig0037509:+2765 | Msa1456530:intergenic |
| CTCAAACAGGCATTCAATGC+TGG | 0.493866 | tig0037509:-3495 | Msa1456530:intron |
| CTGAGCTTGTCCTCGGAGAG+TGG | 0.496448 | tig0037509:+3625 | Msa1456530:intergenic |
| TACTTTGGTCTCAGGTAGAC+TGG | 0.503714 | tig0037509:-3096 | Msa1456530:intron |
| GGTAGATTATAACTTGAAGA+TGG | 0.510036 | tig0037509:+2951 | Msa1456530:intergenic |
| AAACAAAGAAGAGAGTAAAG+AGG | 0.514005 | tig0037509:+3686 | Msa1456530:intergenic |
| ATCTGTTTGAATCTGCAAGA+TGG | 0.516940 | tig0037509:+3422 | Msa1456530:intergenic |
| AATATTGGATCTAATGAAAG+TGG | 0.519493 | tig0037509:-3002 | Msa1456530:CDS |
| ACAACATCTGCAAATAAAGT+AGG | 0.528162 | tig0037509:-3312 | Msa1456530:CDS |
| ATTAGATCCAATATTCGAGA+AGG | 0.541398 | tig0037509:+3010 | Msa1456530:intergenic |
| CAGAAATATTTGGCAGCATG+TGG | 0.544781 | tig0037509:-3605 | Msa1456530:CDS |
| AATATTTCTGAGCTTGTCCT+CGG | 0.546887 | tig0037509:+3618 | Msa1456530:intergenic |
| ACCACAATTACCAAATGTGA+AGG | 0.551748 | tig0037509:-3358 | Msa1456530:CDS |
| GATAAAAGCTAATCGGAAGA+AGG | 0.561024 | tig0037509:-3268 | Msa1456530:CDS |
| TCTTACCGAAGCAGGATGAT+CGG | 0.574745 | tig0037509:-2770 | Msa1456530:CDS |
| GTGAAGGCAGTGGAGCAACT+AGG | 0.575398 | tig0037509:-3049 | Msa1456530:CDS |
| AGTTATAATCTACCTTCCCA+CGG | 0.592644 | tig0037509:-2942 | Msa1456530:CDS |
| ATCGGAAATGGCTAAATACA+AGG | 0.595293 | tig0037509:-2752 | Msa1456530:CDS |
| TTGGCAGCATGTGGTTCACA+AGG | 0.605863 | tig0037509:-3596 | Msa1456530:intron |
| TGAATCACTGAAACCTGTCA+AGG | 0.606622 | tig0037509:-3457 | Msa1456530:CDS |
| ACTCTCACACTTAGAAGTGT+CGG | 0.606788 | tig0037509:+3389 | Msa1456530:intergenic |
| ATTGGATCTAATGAAAGTGG+AGG | 0.613074 | tig0037509:-2999 | Msa1456530:CDS |
| GGGCTTGACAAGGCATAATG+TGG | 0.631155 | tig0037509:-2978 | Msa1456530:CDS |
| TTGGATCTAATGAAAGTGGA+GGG | 0.637148 | tig0037509:-2998 | Msa1456530:CDS |
| TGAAAGTGGAGGGCTTGACA+AGG | 0.644049 | tig0037509:-2988 | Msa1456530:CDS |
| TGTTTGAATCTGCAAGATGG+AGG | 0.654248 | tig0037509:+3425 | Msa1456530:intergenic |
| TCTCAGCAAACCACTCTCCG+AGG | 0.676397 | tig0037509:-3635 | Msa1456530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTCATATATCTTCAT+AGG | - | tig0037509:3583-3602 | Msa1456530:intron | 15.0% |
| !! | TTATATTCATATATCTTCAT+AGG | - | tig0037509:3583-3602 | Msa1456530:intron | 15.0% |
| !!! | TTTGTTTTCTTTTTTAAGCT+TGG | - | tig0037509:2776-2795 | Msa1456530:CDS | 20.0% |
| !! | AAAACTGTATTAAGAAAATC+AGG | + | tig0037509:3328-3347 | Msa1456530:intergenic | 20.0% |
| !!! | TGATTTTCTTAATACAGTTT+TGG | - | tig0037509:3327-3346 | Msa1456530:CDS | 20.0% |
| !!! | ATTAATTACAGTTTTGAATG+AGG | + | tig0037509:3551-3570 | Msa1456530:intergenic | 20.0% |
| !!! | TTTGTTTTCTTTTTTAAGCT+TGG | - | tig0037509:2776-2795 | Msa1456530:CDS | 20.0% |
| !! | AAAACTGTATTAAGAAAATC+AGG | + | tig0037509:3328-3347 | Msa1456530:intergenic | 20.0% |
| !!! | TGATTTTCTTAATACAGTTT+TGG | - | tig0037509:3327-3346 | Msa1456530:CDS | 20.0% |
| !!! | ATTAATTACAGTTTTGAATG+AGG | + | tig0037509:3551-3570 | Msa1456530:intergenic | 20.0% |
| ! | ATATTAAGAGTAAATGCATG+TGG | + | tig0037509:2900-2919 | Msa1456530:intergenic | 25.0% |
| ! | CTGAGTAAAATATTCTTATG+TGG | - | tig0037509:2923-2942 | Msa1456530:CDS | 25.0% |
| ! | AATGTGAGATAAAAGCTAAT+CGG | - | tig0037509:3171-3190 | Msa1456530:intron | 25.0% |
| ! | AACATTATGAGAAGAATGAA+TGG | + | tig0037509:3222-3241 | Msa1456530:intergenic | 25.0% |
| ! | CAATGAACATTGTGAAATAA+CGG | + | tig0037509:3251-3270 | Msa1456530:intergenic | 25.0% |
| ! | TTGTTTATCCATGTTGTATA+AGG | - | tig0037509:3268-3287 | Msa1456530:CDS | 25.0% |
| ! | GAATATAACCTTATACAACA+TGG | + | tig0037509:3279-3298 | Msa1456530:intergenic | 25.0% |
| !!! | TTAATACAGTTTTGGTACTT+TGG | - | tig0037509:3335-3354 | Msa1456530:CDS | 25.0% |
| ! | AATATTGGATCTAATGAAAG+TGG | - | tig0037509:3444-3463 | Msa1456530:CDS | 25.0% |
| !!! | TGAGGTATTGAAATAGTTTT+TGG | + | tig0037509:3533-3552 | Msa1456530:intergenic | 25.0% |
| ! | TCTTATGCATTCTATATTTC+TGG | + | tig0037509:3650-3669 | Msa1456530:intergenic | 25.0% |
| ! | ATATTAAGAGTAAATGCATG+TGG | + | tig0037509:2900-2919 | Msa1456530:intergenic | 25.0% |
| ! | CTGAGTAAAATATTCTTATG+TGG | - | tig0037509:2923-2942 | Msa1456530:CDS | 25.0% |
| ! | AATGTGAGATAAAAGCTAAT+CGG | - | tig0037509:3171-3190 | Msa1456530:intron | 25.0% |
| ! | AACATTATGAGAAGAATGAA+TGG | + | tig0037509:3222-3241 | Msa1456530:intergenic | 25.0% |
| ! | CAATGAACATTGTGAAATAA+CGG | + | tig0037509:3251-3270 | Msa1456530:intergenic | 25.0% |
| ! | TTGTTTATCCATGTTGTATA+AGG | - | tig0037509:3268-3287 | Msa1456530:CDS | 25.0% |
| ! | GAATATAACCTTATACAACA+TGG | + | tig0037509:3279-3298 | Msa1456530:intergenic | 25.0% |
| !!! | TTAATACAGTTTTGGTACTT+TGG | - | tig0037509:3335-3354 | Msa1456530:CDS | 25.0% |
| ! | AATATTGGATCTAATGAAAG+TGG | - | tig0037509:3444-3463 | Msa1456530:CDS | 25.0% |
| !!! | TGAGGTATTGAAATAGTTTT+TGG | + | tig0037509:3533-3552 | Msa1456530:intergenic | 25.0% |
| ! | TCTTATGCATTCTATATTTC+TGG | + | tig0037509:3650-3669 | Msa1456530:intergenic | 25.0% |
| AAACAAAGAAGAGAGTAAAG+AGG | + | tig0037509:2763-2782 | Msa0226010:intergenic | 30.0% | |
| TTATGTGGTTTAACTCAAAC+AGG | - | tig0037509:2938-2957 | Msa1456530:CDS | 30.0% | |
| ! | TTGTTTAGAACCTTCACATT+TGG | + | tig0037509:3101-3120 | Msa1456530:intergenic | 30.0% |
| ACAACATCTGCAAATAAAGT+AGG | - | tig0037509:3134-3153 | Msa1456530:intron | 30.0% | |
| ATTAGATCCAATATTCGAGA+AGG | + | tig0037509:3439-3458 | Msa1456530:intergenic | 30.0% | |
| GGTAGATTATAACTTGAAGA+TGG | + | tig0037509:3498-3517 | Msa1456530:intergenic | 30.0% | |
| !! | AAATAGTTTTTGGAAACCGT+GGG | + | tig0037509:3523-3542 | Msa1456530:intergenic | 30.0% |
| AGGTAATGCATACTAACATA+AGG | - | tig0037509:3603-3622 | Msa1456530:CDS | 30.0% | |
| AAACAAAGAAGAGAGTAAAG+AGG | + | tig0037509:2763-2782 | Msa1456530:intergenic | 30.0% | |
| TTATGTGGTTTAACTCAAAC+AGG | - | tig0037509:2938-2957 | Msa1456530:CDS | 30.0% | |
| ! | TTGTTTAGAACCTTCACATT+TGG | + | tig0037509:3101-3120 | Msa1456530:intergenic | 30.0% |
| ACAACATCTGCAAATAAAGT+AGG | - | tig0037509:3134-3153 | Msa1456530:intron | 30.0% | |
| ATTAGATCCAATATTCGAGA+AGG | + | tig0037509:3439-3458 | Msa1456530:intergenic | 30.0% | |
| GGTAGATTATAACTTGAAGA+TGG | + | tig0037509:3498-3517 | Msa1456530:intergenic | 30.0% | |
| !! | AAATAGTTTTTGGAAACCGT+GGG | + | tig0037509:3523-3542 | Msa1456530:intergenic | 30.0% |
| AGGTAATGCATACTAACATA+AGG | - | tig0037509:3603-3622 | Msa1456530:CDS | 30.0% | |
| ! | AATATTTCTGAGCTTGTCCT+CGG | + | tig0037509:2831-2850 | Msa1456530:intergenic | 35.0% |
| AGGACAAGCTCAGAAATATT+TGG | - | tig0037509:2831-2850 | Msa1456530:intron | 35.0% | |
| ATCTGTTTGAATCTGCAAGA+TGG | + | tig0037509:3027-3046 | Msa1456530:intergenic | 35.0% | |
| ACCACAATTACCAAATGTGA+AGG | - | tig0037509:3088-3107 | Msa1456530:intron | 35.0% | |
| ! | ACCTTCACATTTGGTAATTG+TGG | + | tig0037509:3092-3111 | Msa1456530:intergenic | 35.0% |
| GATAAAAGCTAATCGGAAGA+AGG | - | tig0037509:3178-3197 | Msa1456530:intron | 35.0% | |
| !!! | ACAAATTTTTTGTGCAGCTC+TGG | + | tig0037509:3379-3398 | Msa1456530:intergenic | 35.0% |
| GCTGCACAAAAAATTTGTGA+AGG | - | tig0037509:3381-3400 | Msa1456530:CDS | 35.0% | |
| CAAAAAATTTGTGAAGGCAG+TGG | - | tig0037509:3387-3406 | Msa1456530:CDS | 35.0% | |
| ATTGGATCTAATGAAAGTGG+AGG | - | tig0037509:3447-3466 | Msa1456530:CDS | 35.0% | |
| TTGGATCTAATGAAAGTGGA+GGG | - | tig0037509:3448-3467 | Msa1456530:CDS | 35.0% | |
| AGTTATAATCTACCTTCCCA+CGG | - | tig0037509:3504-3523 | Msa1456530:intron | 35.0% | |
| !! | GAAATAGTTTTTGGAAACCG+TGG | + | tig0037509:3524-3543 | Msa1456530:intergenic | 35.0% |
| ATCGGAAATGGCTAAATACA+AGG | - | tig0037509:3694-3713 | Msa1456530:CDS | 35.0% | |
| ! | AATATTTCTGAGCTTGTCCT+CGG | + | tig0037509:2831-2850 | Msa1456530:intergenic | 35.0% |
| AGGACAAGCTCAGAAATATT+TGG | - | tig0037509:2831-2850 | Msa1456530:intron | 35.0% | |
| ATCTGTTTGAATCTGCAAGA+TGG | + | tig0037509:3027-3046 | Msa1456530:intergenic | 35.0% | |
| ACCACAATTACCAAATGTGA+AGG | - | tig0037509:3088-3107 | Msa1456530:intron | 35.0% | |
| ! | ACCTTCACATTTGGTAATTG+TGG | + | tig0037509:3092-3111 | Msa1456530:intergenic | 35.0% |
| GATAAAAGCTAATCGGAAGA+AGG | - | tig0037509:3178-3197 | Msa1456530:intron | 35.0% | |
| !!! | ACAAATTTTTTGTGCAGCTC+TGG | + | tig0037509:3379-3398 | Msa1456530:intergenic | 35.0% |
| GCTGCACAAAAAATTTGTGA+AGG | - | tig0037509:3381-3400 | Msa1456530:CDS | 35.0% | |
| CAAAAAATTTGTGAAGGCAG+TGG | - | tig0037509:3387-3406 | Msa1456530:CDS | 35.0% | |
| ATTGGATCTAATGAAAGTGG+AGG | - | tig0037509:3447-3466 | Msa1456530:CDS | 35.0% | |
| TTGGATCTAATGAAAGTGGA+GGG | - | tig0037509:3448-3467 | Msa1456530:CDS | 35.0% | |
| AGTTATAATCTACCTTCCCA+CGG | - | tig0037509:3504-3523 | Msa1456530:intron | 35.0% | |
| !! | GAAATAGTTTTTGGAAACCG+TGG | + | tig0037509:3524-3543 | Msa1456530:intergenic | 35.0% |
| ATCGGAAATGGCTAAATACA+AGG | - | tig0037509:3694-3713 | Msa1456530:CDS | 35.0% | |
| !!! | CTTTTTTAAGCTTGGAGCAG+TGG | - | tig0037509:2784-2803 | Msa1456530:CDS | 40.0% |
| CAGAAATATTTGGCAGCATG+TGG | - | tig0037509:2841-2860 | Msa1456530:intron | 40.0% | |
| TGAATCACTGAAACCTGTCA+AGG | - | tig0037509:2989-3008 | Msa1456530:CDS | 40.0% | |
| TGTTTGAATCTGCAAGATGG+AGG | + | tig0037509:3024-3043 | Msa1456530:intergenic | 40.0% | |
| ! | ACTCTCACACTTAGAAGTGT+CGG | + | tig0037509:3060-3079 | Msa1456530:intergenic | 40.0% |
| !! | AGTTTTGGTACTTTGGTCTC+AGG | - | tig0037509:3342-3361 | Msa1456530:CDS | 40.0% |
| CGCTATTCCTTCTCGAATAT+TGG | - | tig0037509:3429-3448 | Msa1456530:CDS | 40.0% | |
| !!! | CTTTTTTAAGCTTGGAGCAG+TGG | - | tig0037509:2784-2803 | Msa1456530:CDS | 40.0% |
| CAGAAATATTTGGCAGCATG+TGG | - | tig0037509:2841-2860 | Msa1456530:intron | 40.0% | |
| TGAATCACTGAAACCTGTCA+AGG | - | tig0037509:2989-3008 | Msa1456530:CDS | 40.0% | |
| TGTTTGAATCTGCAAGATGG+AGG | + | tig0037509:3024-3043 | Msa1456530:intergenic | 40.0% | |
| ! | ACTCTCACACTTAGAAGTGT+CGG | + | tig0037509:3060-3079 | Msa1456530:intergenic | 40.0% |
| !! | AGTTTTGGTACTTTGGTCTC+AGG | - | tig0037509:3342-3361 | Msa1456530:CDS | 40.0% |
| CGCTATTCCTTCTCGAATAT+TGG | - | tig0037509:3429-3448 | Msa1456530:CDS | 40.0% | |
| CTCAAACAGGCATTCAATGC+TGG | - | tig0037509:2951-2970 | Msa1456530:CDS | 45.0% | |
| TACTTTGGTCTCAGGTAGAC+TGG | - | tig0037509:3350-3369 | Msa1456530:CDS | 45.0% | |
| !! | AGTTTTTGGAAACCGTGGGA+AGG | + | tig0037509:3519-3538 | Msa1456530:intergenic | 45.0% |
| GAGACATATCTTACCGAAGC+AGG | - | tig0037509:3668-3687 | Msa1456530:CDS | 45.0% | |
| TCTTACCGAAGCAGGATGAT+CGG | - | tig0037509:3676-3695 | Msa1456530:CDS | 45.0% | |
| CATTTCCGATCATCCTGCTT+CGG | + | tig0037509:3684-3703 | Msa1456530:intergenic | 45.0% | |
| CTCAAACAGGCATTCAATGC+TGG | - | tig0037509:2951-2970 | Msa1456530:CDS | 45.0% | |
| TACTTTGGTCTCAGGTAGAC+TGG | - | tig0037509:3350-3369 | Msa1456530:CDS | 45.0% | |
| !! | AGTTTTTGGAAACCGTGGGA+AGG | + | tig0037509:3519-3538 | Msa1456530:intergenic | 45.0% |
| GAGACATATCTTACCGAAGC+AGG | - | tig0037509:3668-3687 | Msa1456530:CDS | 45.0% | |
| TCTTACCGAAGCAGGATGAT+CGG | - | tig0037509:3676-3695 | Msa1456530:CDS | 45.0% | |
| CATTTCCGATCATCCTGCTT+CGG | + | tig0037509:3684-3703 | Msa1456530:intergenic | 45.0% | |
| TTGGCAGCATGTGGTTCACA+AGG | - | tig0037509:2850-2869 | Msa1456530:intron | 50.0% | |
| GAGGCTACAGATTCCTTGAC+AGG | + | tig0037509:3005-3024 | Msa1456530:intergenic | 50.0% | |
| TGAAAGTGGAGGGCTTGACA+AGG | - | tig0037509:3458-3477 | Msa1456530:CDS | 50.0% | |
| GGGCTTGACAAGGCATAATG+TGG | - | tig0037509:3468-3487 | Msa1456530:CDS | 50.0% | |
| CGAAGCAGGATGATCGGAAA+TGG | - | tig0037509:3682-3701 | Msa1456530:CDS | 50.0% | |
| TTGGCAGCATGTGGTTCACA+AGG | - | tig0037509:2850-2869 | Msa1456530:intron | 50.0% | |
| GAGGCTACAGATTCCTTGAC+AGG | + | tig0037509:3005-3024 | Msa1456530:intergenic | 50.0% | |
| TGAAAGTGGAGGGCTTGACA+AGG | - | tig0037509:3458-3477 | Msa1456530:CDS | 50.0% | |
| GGGCTTGACAAGGCATAATG+TGG | - | tig0037509:3468-3487 | Msa1456530:CDS | 50.0% | |
| CGAAGCAGGATGATCGGAAA+TGG | - | tig0037509:3682-3701 | Msa1456530:CDS | 50.0% | |
| TCTCAGCAAACCACTCTCCG+AGG | - | tig0037509:2811-2830 | Msa1456530:intron | 55.0% | |
| GTGAAGGCAGTGGAGCAACT+AGG | - | tig0037509:3397-3416 | Msa1456530:CDS | 55.0% | |
| TCTCAGCAAACCACTCTCCG+AGG | - | tig0037509:2811-2830 | Msa1456530:intron | 55.0% | |
| GTGAAGGCAGTGGAGCAACT+AGG | - | tig0037509:3397-3416 | Msa1456530:CDS | 55.0% | |
| CTGAGCTTGTCCTCGGAGAG+TGG | + | tig0037509:2824-2843 | Msa1456530:intergenic | 60.0% | |
| CTGAGCTTGTCCTCGGAGAG+TGG | + | tig0037509:2824-2843 | Msa1456530:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0037509 | gene | 2749 | 3719 | 2749 | ID=Msa1456530;Name=Msa1456530 |
| tig0037509 | mRNA | 2749 | 3719 | 2749 | ID=Msa1456530-mRNA-1;Parent=Msa1456530;Name=Msa1456530-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|0.25|1|1|4|0|211 |
| tig0037509 | exon | 3597 | 3719 | 3597 | ID=Msa1456530-mRNA-1:exon:20740;Parent=Msa1456530-mRNA-1 |
| tig0037509 | exon | 3263 | 3508 | 3263 | ID=Msa1456530-mRNA-1:exon:20739;Parent=Msa1456530-mRNA-1 |
| tig0037509 | exon | 2907 | 3104 | 2907 | ID=Msa1456530-mRNA-1:exon:20738;Parent=Msa1456530-mRNA-1 |
| tig0037509 | exon | 2749 | 2817 | 2749 | ID=Msa1456530-mRNA-1:exon:20737;Parent=Msa1456530-mRNA-1 |
| tig0037509 | CDS | 3597 | 3719 | 3597 | ID=Msa1456530-mRNA-1:cds;Parent=Msa1456530-mRNA-1 |
| tig0037509 | CDS | 3263 | 3508 | 3263 | ID=Msa1456530-mRNA-1:cds;Parent=Msa1456530-mRNA-1 |
| tig0037509 | CDS | 2907 | 3104 | 2907 | ID=Msa1456530-mRNA-1:cds;Parent=Msa1456530-mRNA-1 |
| tig0037509 | CDS | 2749 | 2817 | 2749 | ID=Msa1456530-mRNA-1:cds;Parent=Msa1456530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
