Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1457120 | XP_003605474.1 | 82.231 | 242 | 28 | 1 | 4 | 245 | 3 | 229 | 1.30e-131 | 380 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1457120 | sp|Q9FJK3|AGL80_ARATH | 53.797 | 158 | 72 | 1 | 4 | 161 | 3 | 159 | 4.07e-44 | 154 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1457120 | G7JM29 | 82.231 | 242 | 28 | 1 | 4 | 245 | 3 | 229 | 6.19e-132 | 380 |
Gene ID | Type | Classification |
---|---|---|
Msa1457120 | TF | MADS-M-type |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1457120 | MtrunA17_Chr4g0014031 | 82.231 | 242 | 28 | 1 | 4 | 245 | 3 | 229 | 1.19e-135 | 380 |
Msa1457120 | MtrunA17_Chr4g0014131 | 79.752 | 242 | 36 | 1 | 4 | 245 | 3 | 231 | 3.38e-131 | 369 |
Msa1457120 | MtrunA17_Chr8g0351751 | 61.753 | 251 | 81 | 5 | 4 | 245 | 3 | 247 | 2.08e-98 | 287 |
Msa1457120 | MtrunA17_Chr4g0014321 | 58.367 | 245 | 88 | 4 | 1 | 245 | 1 | 231 | 1.47e-94 | 276 |
Msa1457120 | MtrunA17_Chr4g0013041 | 58.216 | 213 | 59 | 3 | 6 | 218 | 5 | 187 | 6.31e-81 | 241 |
Msa1457120 | MtrunA17_Chr4g0014121 | 80.519 | 154 | 30 | 0 | 4 | 157 | 31 | 184 | 2.85e-80 | 239 |
Msa1457120 | MtrunA17_Chr3g0110131 | 48.963 | 241 | 116 | 4 | 4 | 242 | 3 | 238 | 1.37e-63 | 198 |
Msa1457120 | MtrunA17_Chr3g0107381 | 54.902 | 153 | 68 | 1 | 4 | 156 | 3 | 154 | 1.79e-57 | 182 |
Msa1457120 | MtrunA17_Chr2g0296831 | 72.500 | 120 | 33 | 0 | 4 | 123 | 3 | 122 | 1.51e-49 | 158 |
Msa1457120 | MtrunA17_Chr3g0107331 | 44.720 | 161 | 88 | 1 | 4 | 164 | 2 | 161 | 1.94e-43 | 144 |
Msa1457120 | MtrunA17_Chr3g0107351 | 43.396 | 159 | 89 | 1 | 4 | 162 | 2 | 159 | 6.53e-42 | 140 |
Msa1457120 | MtrunA17_Chr5g0432691 | 44.667 | 150 | 82 | 1 | 6 | 155 | 5 | 153 | 4.46e-41 | 138 |
Msa1457120 | MtrunA17_Chr3g0107361 | 41.509 | 159 | 92 | 1 | 4 | 162 | 2 | 159 | 1.21e-39 | 134 |
Msa1457120 | MtrunA17_Chr3g0107341 | 42.138 | 159 | 91 | 1 | 4 | 162 | 2 | 159 | 3.29e-39 | 133 |
Msa1457120 | MtrunA17_Chr5g0420351 | 44.805 | 154 | 83 | 2 | 4 | 157 | 3 | 154 | 4.54e-38 | 130 |
Msa1457120 | MtrunA17_Chr2g0283941 | 41.447 | 152 | 89 | 0 | 6 | 157 | 5 | 156 | 1.37e-37 | 132 |
Msa1457120 | MtrunA17_Chr3g0107461 | 39.610 | 154 | 93 | 0 | 4 | 157 | 3 | 156 | 9.44e-37 | 127 |
Msa1457120 | MtrunA17_Chr1g0188681 | 40.909 | 154 | 89 | 2 | 4 | 157 | 3 | 154 | 8.67e-34 | 119 |
Msa1457120 | MtrunA17_Chr1g0197461 | 39.610 | 154 | 91 | 2 | 4 | 157 | 2 | 153 | 1.24e-33 | 119 |
Msa1457120 | MtrunA17_Chr1g0197321 | 39.623 | 159 | 94 | 2 | 1 | 159 | 1 | 157 | 3.18e-33 | 118 |
Msa1457120 | MtrunA17_Chr1g0197261 | 39.744 | 156 | 92 | 2 | 4 | 159 | 3 | 156 | 8.57e-33 | 117 |
Msa1457120 | MtrunA17_Chr3g0105791 | 39.416 | 137 | 83 | 0 | 30 | 166 | 1 | 137 | 1.32e-31 | 113 |
Msa1457120 | MtrunA17_Chr1g0193311 | 43.506 | 154 | 85 | 2 | 4 | 157 | 3 | 154 | 1.41e-31 | 114 |
Msa1457120 | MtrunA17_Chr7g0218151 | 42.857 | 154 | 86 | 2 | 4 | 157 | 3 | 154 | 2.65e-31 | 113 |
Msa1457120 | MtrunA17_Chr1g0188661 | 42.857 | 154 | 86 | 2 | 4 | 157 | 3 | 154 | 3.04e-31 | 113 |
Msa1457120 | MtrunA17_Chr4g0031421 | 39.416 | 137 | 83 | 0 | 30 | 166 | 1 | 137 | 1.15e-30 | 110 |
Msa1457120 | MtrunA17_Chr4g0012761 | 41.558 | 154 | 88 | 2 | 4 | 157 | 3 | 154 | 1.11e-29 | 108 |
Msa1457120 | MtrunA17_Chr1g0188651 | 42.138 | 159 | 88 | 2 | 4 | 162 | 3 | 157 | 2.50e-28 | 105 |
Msa1457120 | MtrunA17_Chr3g0106421 | 40.625 | 128 | 76 | 0 | 30 | 157 | 1 | 128 | 1.28e-27 | 105 |
Msa1457120 | MtrunA17_Chr4g0008701 | 39.103 | 156 | 79 | 2 | 3 | 158 | 5 | 144 | 7.65e-27 | 108 |
Msa1457120 | MtrunA17_Chr7g0267601 | 38.462 | 156 | 80 | 2 | 3 | 158 | 5 | 144 | 7.68e-27 | 107 |
Msa1457120 | MtrunA17_Chr3g0128721 | 29.534 | 193 | 125 | 2 | 3 | 195 | 5 | 186 | 2.22e-26 | 107 |
Msa1457120 | MtrunA17_Chr2g0296851 | 58.763 | 97 | 39 | 1 | 75 | 170 | 1 | 97 | 6.52e-25 | 94.7 |
Msa1457120 | MtrunA17_Chr2g0296861 | 35.099 | 151 | 97 | 1 | 7 | 157 | 6 | 155 | 1.30e-23 | 93.2 |
Msa1457120 | MtrunA17_Chr3g0106501 | 31.538 | 130 | 89 | 0 | 30 | 159 | 1 | 130 | 8.00e-18 | 77.8 |
Msa1457120 | MtrunA17_Chr6g0449861 | 35.965 | 114 | 65 | 5 | 1 | 108 | 9 | 120 | 1.37e-11 | 63.5 |
Msa1457120 | MtrunA17_Chr6g0457851 | 35.135 | 111 | 65 | 4 | 4 | 108 | 13 | 122 | 1.64e-11 | 63.2 |
Msa1457120 | MtrunA17_Chr1g0212151 | 32.432 | 111 | 68 | 3 | 4 | 108 | 3 | 112 | 7.61e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1457120 | AT5G48670.1 | 53.797 | 158 | 72 | 1 | 4 | 161 | 3 | 159 | 4.14e-45 | 154 |
Msa1457120 | AT1G65300.1 | 40.761 | 184 | 95 | 3 | 4 | 187 | 2 | 171 | 1.78e-40 | 140 |
Msa1457120 | AT1G65330.1 | 41.081 | 185 | 95 | 2 | 4 | 188 | 2 | 172 | 2.14e-39 | 138 |
Msa1457120 | AT5G26630.1 | 41.379 | 203 | 102 | 3 | 4 | 204 | 3 | 190 | 1.45e-36 | 129 |
Msa1457120 | AT5G26650.1 | 40.854 | 164 | 96 | 1 | 6 | 169 | 3 | 165 | 5.44e-36 | 131 |
Msa1457120 | AT5G27960.1 | 40.244 | 164 | 97 | 1 | 6 | 169 | 3 | 165 | 3.22e-35 | 128 |
Msa1457120 | AT1G31630.1 | 35.165 | 182 | 103 | 3 | 4 | 185 | 2 | 168 | 7.62e-34 | 125 |
Msa1457120 | AT1G31640.1 | 39.073 | 151 | 90 | 2 | 4 | 154 | 2 | 150 | 8.06e-31 | 119 |
Msa1457120 | AT5G27810.1 | 54.839 | 93 | 42 | 0 | 30 | 122 | 1 | 93 | 8.72e-30 | 108 |
Msa1457120 | AT3G05860.2 | 39.189 | 148 | 89 | 1 | 4 | 151 | 3 | 149 | 5.67e-29 | 108 |
Msa1457120 | AT3G05860.3 | 39.189 | 148 | 89 | 1 | 4 | 151 | 3 | 149 | 1.99e-28 | 108 |
Msa1457120 | AT3G05860.1 | 39.189 | 148 | 89 | 1 | 4 | 151 | 3 | 149 | 2.40e-28 | 108 |
Msa1457120 | AT2G28700.1 | 36.364 | 165 | 100 | 2 | 4 | 166 | 3 | 164 | 1.07e-26 | 105 |
Msa1457120 | AT5G26580.1 | 36.538 | 156 | 83 | 3 | 1 | 156 | 1 | 140 | 1.61e-25 | 102 |
Msa1457120 | AT1G22590.2 | 31.210 | 157 | 103 | 2 | 1 | 157 | 1 | 152 | 3.52e-23 | 92.4 |
Msa1457120 | AT5G06500.1 | 34.211 | 152 | 98 | 2 | 4 | 155 | 3 | 152 | 6.84e-18 | 80.5 |
Msa1457120 | AT2G40210.1 | 39.098 | 133 | 79 | 2 | 4 | 135 | 3 | 134 | 6.10e-17 | 79.3 |
Msa1457120 | AT5G58890.1 | 37.795 | 127 | 68 | 5 | 7 | 124 | 6 | 130 | 5.21e-15 | 73.2 |
Msa1457120 | AT5G55690.1 | 46.970 | 66 | 28 | 2 | 1 | 60 | 1 | 65 | 5.74e-12 | 64.3 |
Msa1457120 | AT5G55690.2 | 46.970 | 66 | 28 | 2 | 1 | 60 | 1 | 65 | 5.74e-12 | 64.3 |
Find 63 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAATTTCTCTTCAGCCTTC+AGG | 0.203143 | tig0038468:-10430 | Msa1457120:intergenic |
AGAAACAAAGAAAAGAAAAT+AGG | 0.231520 | tig0038468:+10453 | Msa1457120:CDS |
GAGTGAAGAAATGGCAATTA+TGG | 0.233693 | tig0038468:+10715 | Msa1457120:CDS |
CCATTTGGTGAGGTCAATTC+TGG | 0.235784 | tig0038468:+10836 | Msa1457120:CDS |
CAATTTCTCTTCAGCCTTCA+GGG | 0.315648 | tig0038468:-10429 | Msa1457120:intergenic |
GTGAGGTCAATTCTGGAGTT+TGG | 0.330469 | tig0038468:+10843 | Msa1457120:CDS |
AACGAAGGGTCTATTGAAAA+AGG | 0.335070 | tig0038468:+10220 | Msa1457120:CDS |
ATGAGCCTCAACCTGAGATT+TGG | 0.345571 | tig0038468:+10300 | Msa1457120:CDS |
ATAATGTCATCATCATTAAT+AGG | 0.375800 | tig0038468:-10758 | Msa1457120:intergenic |
TTGCCATTTCGAGTTGGACT+TGG | 0.402057 | tig0038468:-10658 | Msa1457120:intergenic |
TATGCAAAGTCAATTATTGA+TGG | 0.408286 | tig0038468:+10778 | Msa1457120:CDS |
ATCTCAGGTTGAGGCTCATA+AGG | 0.418788 | tig0038468:-10296 | Msa1457120:intergenic |
GAAACAAAGAAAAGAAAATA+GGG | 0.419680 | tig0038468:+10454 | Msa1457120:CDS |
AGTGAAGAAATGGCAATTAT+GGG | 0.424565 | tig0038468:+10716 | Msa1457120:CDS |
GAAGGACGTTAGTAGACGTT+TGG | 0.432671 | tig0038468:+10589 | Msa1457120:CDS |
GTTGATTGACCACAATTTGA+AGG | 0.436294 | tig0038468:+10571 | Msa1457120:CDS |
GGTCTGATTTACTACCTTGA+AGG | 0.436579 | tig0038468:+10864 | Msa1457120:CDS |
AAACCAAGTCCAACTCGAAA+TGG | 0.452175 | tig0038468:+10655 | Msa1457120:CDS |
AGCATCTAGGAGTGAAGAAA+TGG | 0.457574 | tig0038468:+10706 | Msa1457120:CDS |
AACCTTACTTCTTCTACCCA+TGG | 0.464315 | tig0038468:-10144 | Msa1457120:intergenic |
TTATGGGTCATGGCCATGTT+GGG | 0.476409 | tig0038468:+10732 | Msa1457120:CDS |
CTCATAAGGTCCATACACTA+TGG | 0.479698 | tig0038468:-10282 | Msa1457120:intergenic |
TTTGTGTCAAGAAAGTCTCT+TGG | 0.484197 | tig0038468:-10403 | Msa1457120:intergenic |
TCAATTATTGATGGACTCAA+TGG | 0.488181 | tig0038468:+10787 | Msa1457120:CDS |
TCTGGTAAAGGCCAAATCTC+AGG | 0.493519 | tig0038468:-10311 | Msa1457120:intergenic |
AGAGACTTTCTTGACACAAA+GGG | 0.496096 | tig0038468:+10406 | Msa1457120:CDS |
AACCATGGGTAGAAGAAGTA+AGG | 0.501192 | tig0038468:+10142 | None:intergenic |
CCAGAATTGACCTCACCAAA+TGG | 0.504570 | tig0038468:-10836 | Msa1457120:intergenic |
TGGATATGAGTTATCTTGCT+TGG | 0.509186 | tig0038468:+10549 | Msa1457120:CDS |
TTAGTAGACGTTTGGAAGCA+TGG | 0.511917 | tig0038468:+10597 | Msa1457120:CDS |
TGCAACATCATTGACAATGA+AGG | 0.517037 | tig0038468:-10174 | Msa1457120:intergenic |
ATGAGTCAATGTCTTAATGA+AGG | 0.517500 | tig0038468:+10497 | Msa1457120:CDS |
CTTGACACAAAGGGCCCTGA+AGG | 0.519961 | tig0038468:+10415 | Msa1457120:CDS |
CAATGATCAAAATCAAATCA+TGG | 0.521352 | tig0038468:+10625 | Msa1457120:CDS |
CACCACTTCTAGCAGCATCT+AGG | 0.525777 | tig0038468:+10693 | Msa1457120:CDS |
GAAGCCTGTGCCATAGTGTA+TGG | 0.533456 | tig0038468:+10272 | Msa1457120:CDS |
GTGCAAGAGACAGTGCCATT+TGG | 0.542398 | tig0038468:+10821 | Msa1457120:CDS |
GATTTGGCCTTTACCAGAGG+GGG | 0.545213 | tig0038468:+10316 | Msa1457120:CDS |
GAAATGGCAATTATGGGTCA+TGG | 0.549964 | tig0038468:+10722 | Msa1457120:CDS |
TAGTAGACGTTTGGAAGCAT+GGG | 0.557707 | tig0038468:+10598 | Msa1457120:CDS |
GAGATTTGGCCTTTACCAGA+GGG | 0.564008 | tig0038468:+10314 | Msa1457120:CDS |
ATTATGGGTCATGGCCATGT+TGG | 0.565284 | tig0038468:+10731 | Msa1457120:CDS |
CTCCTAGATGCTGCTAGAAG+TGG | 0.571630 | tig0038468:-10695 | Msa1457120:intergenic |
TACTAACGTCCTTCAAATTG+TGG | 0.573371 | tig0038468:-10580 | Msa1457120:intergenic |
TTGTTGTTGCCATTTCGAGT+TGG | 0.582395 | tig0038468:-10664 | Msa1457120:intergenic |
CATTAATAGGTATCCCAACA+TGG | 0.589301 | tig0038468:-10745 | Msa1457120:intergenic |
TTGATGGACTCAATGGCGGC+TGG | 0.590702 | tig0038468:+10794 | Msa1457120:CDS |
TCATTGTCAATGATGTTGCA+AGG | 0.595963 | tig0038468:+10177 | Msa1457120:CDS |
ACAGGCTTCAATGCCACAGA+GGG | 0.601811 | tig0038468:-10258 | Msa1457120:intergenic |
AAAGGCCAAATCTCAGGTTG+AGG | 0.605277 | tig0038468:-10305 | Msa1457120:intergenic |
CTAGATGCTGCTAGAAGTGG+TGG | 0.605478 | tig0038468:-10692 | Msa1457120:intergenic |
AAGAGACTTTCTTGACACAA+AGG | 0.616640 | tig0038468:+10405 | Msa1457120:CDS |
ATCATACAAGAAAAGAACGA+AGG | 0.618898 | tig0038468:+10205 | Msa1457120:CDS |
TCATACAAGAAAAGAACGAA+GGG | 0.620354 | tig0038468:+10206 | Msa1457120:CDS |
TGAGATTTGGCCTTTACCAG+AGG | 0.627166 | tig0038468:+10313 | Msa1457120:CDS |
GATGCTGCTAGAAGTGGTGG+TGG | 0.633563 | tig0038468:-10689 | Msa1457120:intergenic |
AGGTCCATACACTATGGCAC+AGG | 0.635258 | tig0038468:-10276 | Msa1457120:intergenic |
AGAGACAGTGCCATTTGGTG+AGG | 0.639188 | tig0038468:+10826 | Msa1457120:CDS |
ATTATTGATGGACTCAATGG+CGG | 0.649107 | tig0038468:+10790 | Msa1457120:CDS |
AGATTTGGCCTTTACCAGAG+GGG | 0.656413 | tig0038468:+10315 | Msa1457120:CDS |
GCATGACAATATGTCAACAA+TGG | 0.671130 | tig0038468:+10529 | Msa1457120:CDS |
GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | tig0038468:+10245 | Msa1457120:CDS |
CACAGGCTTCAATGCCACAG+AGG | 0.696692 | tig0038468:-10259 | Msa1457110:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAACAAAGAAAAGAAAAT+AGG | + | tig0038468:10453-10472 | Msa1457120:CDS | 20.0% |
!! | GAAACAAAGAAAAGAAAATA+GGG | + | tig0038468:10454-10473 | Msa1457120:CDS | 20.0% |
!! | ATAATGTCATCATCATTAAT+AGG | - | tig0038468:10761-10780 | Msa1457120:intergenic | 20.0% |
! | CAATGATCAAAATCAAATCA+TGG | + | tig0038468:10625-10644 | Msa1457120:CDS | 25.0% |
! | TATGCAAAGTCAATTATTGA+TGG | + | tig0038468:10778-10797 | Msa1457120:CDS | 25.0% |
ATCATACAAGAAAAGAACGA+AGG | + | tig0038468:10205-10224 | Msa1457120:CDS | 30.0% | |
TCATACAAGAAAAGAACGAA+GGG | + | tig0038468:10206-10225 | Msa1457120:CDS | 30.0% | |
!! | TGAATTTTGAGAGCACAAAT+TGG | - | tig0038468:10343-10362 | Msa1457120:intergenic | 30.0% |
ATGAGTCAATGTCTTAATGA+AGG | + | tig0038468:10497-10516 | Msa1457120:CDS | 30.0% | |
AGTGAAGAAATGGCAATTAT+GGG | + | tig0038468:10716-10735 | Msa1457120:CDS | 30.0% | |
!! | TCAATTATTGATGGACTCAA+TGG | + | tig0038468:10787-10806 | Msa1457120:CDS | 30.0% |
TGCAACATCATTGACAATGA+AGG | - | tig0038468:10177-10196 | None:intergenic | 35.0% | |
TCATTGTCAATGATGTTGCA+AGG | + | tig0038468:10177-10196 | Msa1457120:CDS | 35.0% | |
AACGAAGGGTCTATTGAAAA+AGG | + | tig0038468:10220-10239 | Msa1457120:CDS | 35.0% | |
TTTGTGTCAAGAAAGTCTCT+TGG | - | tig0038468:10406-10425 | Msa1457120:intergenic | 35.0% | |
AAGAGACTTTCTTGACACAA+AGG | + | tig0038468:10405-10424 | Msa1457120:CDS | 35.0% | |
AGAGACTTTCTTGACACAAA+GGG | + | tig0038468:10406-10425 | Msa1457120:CDS | 35.0% | |
GCATGACAATATGTCAACAA+TGG | + | tig0038468:10529-10548 | Msa1457120:CDS | 35.0% | |
TGGATATGAGTTATCTTGCT+TGG | + | tig0038468:10549-10568 | Msa1457120:CDS | 35.0% | |
GTTGATTGACCACAATTTGA+AGG | + | tig0038468:10571-10590 | Msa1457120:CDS | 35.0% | |
TACTAACGTCCTTCAAATTG+TGG | - | tig0038468:10583-10602 | Msa1457120:intergenic | 35.0% | |
GAGTGAAGAAATGGCAATTA+TGG | + | tig0038468:10715-10734 | Msa1457120:CDS | 35.0% | |
CATTAATAGGTATCCCAACA+TGG | - | tig0038468:10748-10767 | Msa1457120:intergenic | 35.0% | |
!! | ATTATTGATGGACTCAATGG+CGG | + | tig0038468:10790-10809 | Msa1457120:CDS | 35.0% |
CTCATAAGGTCCATACACTA+TGG | - | tig0038468:10285-10304 | Msa1457120:intergenic | 40.0% | |
CAATTTCTCTTCAGCCTTCA+GGG | - | tig0038468:10432-10451 | Msa1457120:intergenic | 40.0% | |
TCAATTTCTCTTCAGCCTTC+AGG | - | tig0038468:10433-10452 | Msa1457120:intergenic | 40.0% | |
TTAGTAGACGTTTGGAAGCA+TGG | + | tig0038468:10597-10616 | Msa1457120:CDS | 40.0% | |
! | TAGTAGACGTTTGGAAGCAT+GGG | + | tig0038468:10598-10617 | Msa1457120:CDS | 40.0% |
AAACCAAGTCCAACTCGAAA+TGG | + | tig0038468:10655-10674 | Msa1457120:CDS | 40.0% | |
! | TTGTTGTTGCCATTTCGAGT+TGG | - | tig0038468:10667-10686 | Msa1457120:intergenic | 40.0% |
AGCATCTAGGAGTGAAGAAA+TGG | + | tig0038468:10706-10725 | Msa1457120:CDS | 40.0% | |
GAAATGGCAATTATGGGTCA+TGG | + | tig0038468:10722-10741 | Msa1457120:CDS | 40.0% | |
!! | ATCTCAGGTTGAGGCTCATA+AGG | - | tig0038468:10299-10318 | Msa1457120:intergenic | 45.0% |
ATGAGCCTCAACCTGAGATT+TGG | + | tig0038468:10300-10319 | Msa1457120:CDS | 45.0% | |
! | AAAGGCCAAATCTCAGGTTG+AGG | - | tig0038468:10308-10327 | Msa1457120:intergenic | 45.0% |
TCTGGTAAAGGCCAAATCTC+AGG | - | tig0038468:10314-10333 | Msa1457120:intergenic | 45.0% | |
! | TGAGATTTGGCCTTTACCAG+AGG | + | tig0038468:10313-10332 | Msa1457120:CDS | 45.0% |
! | GAGATTTGGCCTTTACCAGA+GGG | + | tig0038468:10314-10333 | Msa1457120:CDS | 45.0% |
! | AGATTTGGCCTTTACCAGAG+GGG | + | tig0038468:10315-10334 | Msa1457120:CDS | 45.0% |
GAAGGACGTTAGTAGACGTT+TGG | + | tig0038468:10589-10608 | Msa1457120:CDS | 45.0% | |
!! | TTGCCATTTCGAGTTGGACT+TGG | - | tig0038468:10661-10680 | Msa1457120:intergenic | 45.0% |
ATTATGGGTCATGGCCATGT+TGG | + | tig0038468:10731-10750 | Msa1457120:CDS | 45.0% | |
TTATGGGTCATGGCCATGTT+GGG | + | tig0038468:10732-10751 | Msa1457120:CDS | 45.0% | |
CCAGAATTGACCTCACCAAA+TGG | - | tig0038468:10839-10858 | Msa1457120:intergenic | 45.0% | |
! | CCATTTGGTGAGGTCAATTC+TGG | + | tig0038468:10836-10855 | Msa1457120:CDS | 45.0% |
!! | GTGAGGTCAATTCTGGAGTT+TGG | + | tig0038468:10843-10862 | Msa1457120:CDS | 45.0% |
ACAGGCTTCAATGCCACAGA+GGG | - | tig0038468:10261-10280 | Msa1457120:intergenic | 50.0% | |
GAAGCCTGTGCCATAGTGTA+TGG | + | tig0038468:10272-10291 | Msa1457120:CDS | 50.0% | |
AGGTCCATACACTATGGCAC+AGG | - | tig0038468:10279-10298 | Msa1457120:intergenic | 50.0% | |
! | GATTTGGCCTTTACCAGAGG+GGG | + | tig0038468:10316-10335 | Msa1457120:CDS | 50.0% |
AATTGGACCCCCTCTGGTAA+AGG | - | tig0038468:10326-10345 | Msa1457120:intergenic | 50.0% | |
CTAGATGCTGCTAGAAGTGG+TGG | - | tig0038468:10695-10714 | Msa1457120:intergenic | 50.0% | |
CACCACTTCTAGCAGCATCT+AGG | + | tig0038468:10693-10712 | Msa1457120:CDS | 50.0% | |
CTCCTAGATGCTGCTAGAAG+TGG | - | tig0038468:10698-10717 | Msa1457120:intergenic | 50.0% | |
! | GTGCAAGAGACAGTGCCATT+TGG | + | tig0038468:10821-10840 | Msa1457120:CDS | 50.0% |
!! | AGAGACAGTGCCATTTGGTG+AGG | + | tig0038468:10826-10845 | Msa1457120:CDS | 50.0% |
GCTGAACTTAGCACCCTCTG+TGG | + | tig0038468:10245-10264 | Msa1457120:CDS | 55.0% | |
CACAGGCTTCAATGCCACAG+AGG | - | tig0038468:10262-10281 | Msa1457120:intergenic | 55.0% | |
AGCACAAATTGGACCCCCTC+TGG | - | tig0038468:10332-10351 | Msa1457120:intergenic | 55.0% | |
CTTGACACAAAGGGCCCTGA+AGG | + | tig0038468:10415-10434 | Msa1457120:CDS | 55.0% | |
GATGCTGCTAGAAGTGGTGG+TGG | - | tig0038468:10692-10711 | Msa1457120:intergenic | 55.0% | |
!! | TTGATGGACTCAATGGCGGC+TGG | + | tig0038468:10794-10813 | Msa1457120:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0038468 | gene | 10146 | 10883 | 10146 | ID=Msa1457120;Name=Msa1457120 |
tig0038468 | mRNA | 10146 | 10883 | 10146 | ID=Msa1457120-mRNA-1;Parent=Msa1457120;Name=Msa1457120-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|245 |
tig0038468 | exon | 10146 | 10883 | 10146 | ID=Msa1457120-mRNA-1:exon:21013;Parent=Msa1457120-mRNA-1 |
tig0038468 | CDS | 10146 | 10883 | 10146 | ID=Msa1457120-mRNA-1:cds;Parent=Msa1457120-mRNA-1 |
Gene Sequence |
Protein sequence |