AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1457340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457340 MtrunA17_Chr6g0463571 98.387 310 5 0 1 310 1 310 0.0 623
Msa1457340 MtrunA17_Chr5g0432701 50.781 256 86 9 26 274 49 271 7.02e-61 197
Msa1457340 MtrunA17_Chr3g0107491 44.710 293 106 14 26 281 36 309 2.60e-52 176
Msa1457340 MtrunA17_Chr4g0036071 57.714 175 66 3 76 243 279 452 1.96e-49 171
Msa1457340 MtrunA17_Chr3g0128781 49.541 218 84 6 28 243 7 200 3.80e-49 166
Msa1457340 MtrunA17_Chr2g0329551 57.143 168 57 4 107 260 168 334 4.15e-47 164
Msa1457340 MtrunA17_Chr1g0156051 46.818 220 98 7 74 281 303 515 5.60e-33 127
Msa1457340 MtrunA17_Chr2g0316551 49.474 95 48 0 149 243 206 300 1.33e-20 90.5
Msa1457340 MtrunA17_Chr4g0040891 43.966 116 58 1 149 257 192 307 1.81e-19 87.0
Msa1457340 MtrunA17_Chr2g0325131 47.000 100 53 0 149 248 189 288 8.34e-19 85.5
Msa1457340 MtrunA17_Chr1g0202051 34.361 227 132 6 31 252 11 225 1.21e-18 84.3
Msa1457340 MtrunA17_Chr8g0380611 30.153 262 141 11 11 244 75 322 1.06e-13 70.9
Msa1457340 MtrunA17_Chr2g0306581 65.306 49 17 0 139 187 1 49 2.63e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457340 AT1G43700.1 45.260 327 121 12 13 287 12 332 1.65e-66 212
Msa1457340 AT2G31370.5 64.828 145 41 2 109 244 151 294 4.06e-50 171
Msa1457340 AT2G31370.2 59.880 167 56 3 109 265 151 316 1.08e-49 170
Msa1457340 AT2G31370.4 59.880 167 56 3 109 265 151 316 1.08e-49 170
Msa1457340 AT2G31370.1 59.880 167 56 3 109 265 151 316 1.08e-49 170
Msa1457340 AT2G31370.7 59.880 167 56 3 109 265 151 316 1.08e-49 170
Msa1457340 AT2G31370.3 59.880 167 56 3 109 265 151 316 1.08e-49 170
Msa1457340 AT2G31370.6 59.880 167 56 3 109 265 151 316 1.08e-49 170
Msa1457340 AT4G38900.2 55.497 191 62 5 73 243 299 486 3.97e-49 172
Msa1457340 AT4G38900.3 55.497 191 62 5 73 243 299 486 3.97e-49 172
Msa1457340 AT2G40620.1 46.000 250 110 8 2 243 8 240 4.37e-49 167
Msa1457340 AT4G38900.1 53.807 197 62 6 73 243 299 492 1.22e-46 165
Msa1457340 AT1G06070.1 54.598 174 63 3 109 273 159 325 1.16e-45 160
Msa1457340 AT1G06850.1 62.791 129 47 1 123 251 121 248 2.35e-45 157
Msa1457340 AT2G21230.4 54.444 180 66 3 76 243 287 462 1.33e-44 159
Msa1457340 AT2G21230.1 54.444 180 66 3 76 243 287 462 1.33e-44 159
Msa1457340 AT2G21230.3 52.688 186 66 4 76 243 287 468 2.47e-42 153
Msa1457340 AT2G21230.2 53.846 169 62 3 76 232 287 451 3.72e-40 146
Msa1457340 AT1G06850.2 72.152 79 21 1 123 201 121 198 8.30e-28 108
Msa1457340 AT2G13150.1 35.503 169 93 4 83 244 83 242 6.54e-19 85.1
Msa1457340 AT2G42380.2 41.880 117 57 1 149 254 184 300 7.79e-19 85.9
Msa1457340 AT3G58120.1 47.368 95 50 0 149 243 200 294 1.29e-18 85.1
Msa1457340 AT2G12940.1 32.597 181 108 5 83 260 82 251 1.67e-17 81.6
Msa1457340 AT2G12900.1 38.235 102 62 1 143 244 109 209 2.94e-16 77.4
Msa1457340 AT2G42380.5 45.238 84 46 0 149 232 184 267 5.36e-15 73.9
Msa1457340 AT3G58120.2 45.679 81 44 0 149 229 200 280 5.50e-14 71.2
Msa1457340 AT1G58110.1 28.571 252 135 7 22 244 87 322 4.99e-13 69.3
Msa1457340 AT1G58110.2 28.571 252 135 7 22 244 87 322 4.99e-13 69.3
Msa1457340 AT2G42380.1 37.607 117 51 2 149 254 184 289 1.26e-12 67.8
Msa1457340 AT2G21235.1 38.235 102 62 1 151 252 359 459 2.27e-12 67.8
Msa1457340 AT2G42380.3 64.444 45 16 0 149 193 184 228 1.78e-11 63.5
Msa1457340 AT2G42380.4 64.444 45 16 0 149 193 184 228 1.78e-11 63.5

Find 107 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGCCAGGTTGTGTCTGC+TGG 0.197022 tig0038857:-11073 None:intergenic
TATGTATCTTCTACAGTTTA+AGG 0.243523 tig0038857:+11287 Msa1457340:three_prime_UTR
AAGACAATTTCCTCAACTTT+AGG 0.254590 tig0038857:+6015 Msa1457340:five_prime_UTR
ATAAAACATCATAGGATTAA+AGG 0.291195 tig0038857:-11267 None:intergenic
TTTACAGGATTCTTGCTAAT+AGG 0.313599 tig0038857:+7985 Msa1457340:intron
TTGATTATAGATGGTGGTTA+TGG 0.329209 tig0038857:+11435 Msa1457340:three_prime_UTR
TTGATCCTAAGAGAGCTAAA+AGG 0.339939 tig0038857:+6680 Msa1457340:CDS
TGATTTGACTGCTCAGAATA+AGG 0.343859 tig0038857:+10355 Msa1457340:CDS
CAACATCAAAGTAGATGATT+TGG 0.347956 tig0038857:+11178 Msa1457340:three_prime_UTR
GGGTTAGGGTTTGGTGGTGA+AGG 0.352329 tig0038857:+6520 Msa1457340:CDS
TGCAGAAAGTACAAAATAAT+AGG 0.358743 tig0038857:-11321 None:intergenic
AACTAGTTGTTGATTATAGA+TGG 0.367093 tig0038857:+11426 Msa1457340:three_prime_UTR
TATATATACAACATGTTACT+TGG 0.381317 tig0038857:-11219 None:intergenic
TGGGAACTTGGAAGTGGTGG+TGG 0.383969 tig0038857:-6145 None:intergenic
GCTGGTAATCCTTCATTTAA+CGG 0.384795 tig0038857:+10993 Msa1457340:CDS
TTTGATGGGTTAGGGTTTGG+TGG 0.386396 tig0038857:+6514 Msa1457340:CDS
CTGGTAATCCTTCATTTAAC+GGG 0.387737 tig0038857:+10994 Msa1457340:CDS
TGTTGTATACGAGCTACTTT+TGG 0.392286 tig0038857:-11160 None:intergenic
AATCATTTGACTGCCGTTGC+TGG 0.392785 tig0038857:+10975 Msa1457340:CDS
TGCACAACTTACAGTCCTTC+AGG 0.397567 tig0038857:+8103 Msa1457340:CDS
AGAAAGAACTTCAACGCCTT+AGG 0.400050 tig0038857:+10943 Msa1457340:CDS
TTGTGTTTGTGTTGGGAACT+TGG 0.400932 tig0038857:-6157 None:intergenic
CTGAGTGAGAACGGCGGTGG+TGG 0.401141 tig0038857:-6309 None:intergenic
CATGCCAGGTTGTGTCTGCT+GGG 0.407431 tig0038857:-11072 None:intergenic
TCGTGGTCGCTCTAACTTCA+TGG 0.412681 tig0038857:+11127 Msa1457340:CDS
GAACTTGGAAGTGGTGGTGG+TGG 0.415472 tig0038857:-6142 None:intergenic
GTTTGGTGGTGAAGGGGAAA+AGG 0.416147 tig0038857:+6528 Msa1457340:CDS
GTTAGGGTTTGGTGGTGAAG+GGG 0.427763 tig0038857:+6522 Msa1457340:CDS
TCCATGGATGGGTCTGAGAT+GGG 0.439417 tig0038857:+6589 Msa1457340:CDS
GAAGATACATAAAACATCAT+AGG 0.440019 tig0038857:-11275 None:intergenic
AACATTTACAACATGTTATG+TGG 0.441333 tig0038857:-11460 None:intergenic
TTTGTGTTTGTGTTTGTGTT+GGG 0.443221 tig0038857:-6164 None:intergenic
TTCCATGGATGGGTCTGAGA+TGG 0.446734 tig0038857:+6588 Msa1457340:CDS
GGTTGTGTCTGCTGGGGTTG+AGG 0.447864 tig0038857:-11065 None:intergenic
GAGATGGGGTTGTTTGAAGT+TGG 0.453490 tig0038857:+6604 Msa1457340:CDS
GGTTAGGGTTTGGTGGTGAA+GGG 0.457604 tig0038857:+6521 Msa1457340:CDS
TGTTGGGAACTTGGAAGTGG+TGG 0.461042 tig0038857:-6148 None:intergenic
GAACGAGAAGGTGGCATGCC+AGG 0.461585 tig0038857:-11086 None:intergenic
ACAGCGTCAGGGGATGGAAG+AGG 0.465529 tig0038857:-6409 None:intergenic
GTTTGTGTTTGTGTTTGTGT+TGG 0.469600 tig0038857:-6165 None:intergenic
GAAAGAACTTCAACGCCTTA+GGG 0.472203 tig0038857:+10944 Msa1457340:CDS
AACAAGTGTTGTAATGAGAA+TGG 0.479395 tig0038857:-6060 None:intergenic
AGGGGATGGAAGAGGGAGGT+TGG 0.483008 tig0038857:-6401 None:intergenic
ATCCCCTGACGCTGTCCCGA+TGG 0.491064 tig0038857:+6417 Msa1457340:CDS
GGAAAAGGTTGAAGAGAGGA+AGG 0.492873 tig0038857:+6543 Msa1457340:CDS
TTGTGTTGGGAACTTGGAAG+TGG 0.495070 tig0038857:-6151 None:intergenic
AAGTCAATTATAACTGGTGG+TGG 0.495733 tig0038857:-6259 None:intergenic
ATCGGGACAGCGTCAGGGGA+TGG 0.496167 tig0038857:-6415 None:intergenic
AGAGGAAGGTGAGTAGACAT+AGG 0.498750 tig0038857:+6557 Msa1457340:CDS
CGTCGAAGTTTGCTGCGAAA+CGG 0.501035 tig0038857:-6342 None:intergenic
GAGAACATCCCGTTAAATGA+AGG 0.504928 tig0038857:-11002 None:intergenic
AGTGGTGGTGGTGGTTGAAG+TGG 0.505855 tig0038857:-6133 None:intergenic
CGGTGGTGGGTCCCACGTGA+TGG 0.512907 tig0038857:-6295 None:intergenic
AGAGCGACCACGACCGTTGA+AGG 0.516566 tig0038857:-11117 None:intergenic
GATCAACCCTTCAACGGTCG+TGG 0.516911 tig0038857:+11110 Msa1457340:CDS
CAACCCCAGCAGACACAACC+TGG 0.516981 tig0038857:+11068 Msa1457340:CDS
AACTCGATATACAAGTGAGC+TGG 0.519563 tig0038857:+8037 Msa1457340:CDS
ATGAGAATGGAACTTGACTT+TGG 0.521390 tig0038857:-6047 None:intergenic
CAGCGTCAGGGGATGGAAGA+GGG 0.521431 tig0038857:-6408 None:intergenic
GGGTTGTTTGAAGTTGGTGA+TGG 0.524705 tig0038857:+6610 Msa1457340:CDS
TGGACTCATCAGAGTCCATC+GGG 0.530528 tig0038857:-6432 None:intergenic
CATCGGGAAGTCAGCGTCAG+AGG 0.531841 tig0038857:+6453 Msa1457340:CDS
AAGGGGAAAAGGTTGAAGAG+AGG 0.535836 tig0038857:+6539 Msa1457340:CDS
AGGATTACTCATCTGTTGCA+TGG 0.537744 tig0038857:-11045 None:intergenic
GTCGAAGTCGGACGGGTCGA+AGG 0.538001 tig0038857:-6374 None:intergenic
TGAGTGAGAACGGCGGTGGT+GGG 0.539319 tig0038857:-6308 None:intergenic
AGTTCAGCAAGTTTCTCAGC+CGG 0.541555 tig0038857:-6649 None:intergenic
AGGTATAGTAGTTCCATGGA+TGG 0.543947 tig0038857:+6577 Msa1457340:CDS
TGGACTCTGATGAGTCCATC+GGG 0.544487 tig0038857:+6437 Msa1457340:CDS
TGGTGGGTCCCACGTGATGG+TGG 0.546686 tig0038857:-6292 None:intergenic
AAGCTTTGCTTGTTGCTCGA+AGG 0.549248 tig0038857:-10399 None:intergenic
CCCCATCTCAGACCCATCCA+TGG 0.549369 tig0038857:-6590 None:intergenic
CGTTCTGATCAACCCTTCAA+CGG 0.556715 tig0038857:+11104 Msa1457340:CDS
TCTAAGTCAATTATAACTGG+TGG 0.559887 tig0038857:-6262 None:intergenic
TGGAGATGTCGAAGTCGGAC+GGG 0.562741 tig0038857:-6381 None:intergenic
TTGGAGATGTCGAAGTCGGA+CGG 0.562969 tig0038857:-6382 None:intergenic
GGAAGTCAGCGTCAGAGGGA+CGG 0.567008 tig0038857:+6458 Msa1457340:CDS
CCATGGATGGGTCTGAGATG+GGG 0.569336 tig0038857:+6590 Msa1457340:CDS
GAGCGACCACGACCGTTGAA+GGG 0.569915 tig0038857:-11116 None:intergenic
ATATATACAACATGTTACTT+GGG 0.571912 tig0038857:-11218 None:intergenic
ACATAGGTATAGTAGTTCCA+TGG 0.575020 tig0038857:+6573 Msa1457340:CDS
AGTCCATCGGGACAGCGTCA+GGG 0.578916 tig0038857:-6420 None:intergenic
AGTCGGACGGGTCGAAGGTG+AGG 0.583026 tig0038857:-6369 None:intergenic
ATGGACTCTGATGAGTCCAT+CGG 0.585619 tig0038857:+6436 Msa1457340:CDS
GCATCTCAGGAGTTTGTCTG+TGG 0.588489 tig0038857:+6480 Msa1457340:CDS
ATGGACTCATCAGAGTCCAT+CGG 0.588783 tig0038857:-6433 None:intergenic
TAGTTGTTGATTATAGATGG+TGG 0.590796 tig0038857:+11429 Msa1457340:three_prime_UTR
GATATACAAGTGAGCTGGAG+AGG 0.598508 tig0038857:+8042 Msa1457340:CDS
AGGTGGTGTCTGAGTGAGAA+CGG 0.599071 tig0038857:-6318 None:intergenic
CAACAAGCAAAGCTTAGAGA+AGG 0.603588 tig0038857:+10407 Msa1457340:CDS
GGTATAGTAGTTCCATGGAT+GGG 0.613894 tig0038857:+6578 Msa1457340:CDS
ATGCCAGGTTGTGTCTGCTG+GGG 0.624742 tig0038857:-11071 None:intergenic
GAGGTTGGAGATGTCGAAGT+CGG 0.627116 tig0038857:-6386 None:intergenic
GAAAACATGCCACCATCACG+TGG 0.629605 tig0038857:+6283 Msa1457340:CDS
GAAGTTTGCTGCGAAACGGA+AGG 0.630495 tig0038857:-6338 None:intergenic
AAATGAAGGATTACCAGCAA+CGG 0.634361 tig0038857:-10988 None:intergenic
GGTTGATCAGAACGAGAAGG+TGG 0.636519 tig0038857:-11095 None:intergenic
CTGCTGCACGATCAAAAGAG+AGG 0.636521 tig0038857:+8012 Msa1457340:CDS
TGGTGTGAAGAAATCTATGC+CGG 0.640871 tig0038857:+6630 Msa1457340:CDS
TGTCTGAGTGAGAACGGCGG+TGG 0.649339 tig0038857:-6312 None:intergenic
AAGGGTTGATCAGAACGAGA+AGG 0.662505 tig0038857:-11098 None:intergenic
CGTCAGGGGATGGAAGAGGG+AGG 0.669132 tig0038857:-6405 None:intergenic
GTTTGCTGCGAAACGGAAGG+TGG 0.671587 tig0038857:-6335 None:intergenic
ATTCTGAGCAGTCAAATCAG+TGG 0.697438 tig0038857:-10351 None:intergenic
GGACTGTAAGTTGTGCAGAG+AGG 0.716589 tig0038857:-8097 None:intergenic
AAAACATGCCACCATCACGT+GGG 0.739972 tig0038857:+6284 Msa1457340:CDS
TGGTGTCTGAGTGAGAACGG+CGG 0.821224 tig0038857:-6315 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTTAGTTTTTCTTA+TGG + tig0038857:6213-6232 Msa1457340:exon 10.0%
!! TTATTTATGTACTAAATTTA+AGG + tig0038857:6779-6798 Msa1457340:intron 10.0%
!! GTAAACGTATATATAATTTA+CGG - tig0038857:7477-7496 None:intergenic 15.0%
!!! TTATTTTGTAATGGATAATT+TGG + tig0038857:7799-7818 Msa1457340:intron 15.0%
!!! CATAAATTTGATTTTATTTC+TGG - tig0038857:9436-9455 None:intergenic 15.0%
!!! ACAAAATTTAGTAATTTTCT+TGG + tig0038857:9802-9821 Msa1457340:intron 15.0%
!!! TTTTCTAAGTCAATTATAAC+TGG - tig0038857:6268-6287 None:intergenic 20.0%
!! ATATAAGTTTAATGAGTATG+TGG + tig0038857:6859-6878 Msa1457340:intron 20.0%
!! AAATTGTATGTGTTTATGAT+CGG + tig0038857:7110-7129 Msa1457340:intron 20.0%
!! AAAAAACATCATCAAACAAA+GGG - tig0038857:7853-7872 None:intergenic 20.0%
!! TAAACAATTTAACATGAACA+CGG - tig0038857:7889-7908 None:intergenic 20.0%
!! ATACATACAAATGTATAGTT+TGG + tig0038857:8375-8394 Msa1457340:intron 20.0%
!! ATTTGTATGATAATCGATAA+GGG - tig0038857:8793-8812 None:intergenic 20.0%
!! ATGCAATTATAATCAAAATG+AGG - tig0038857:8932-8951 None:intergenic 20.0%
!! CAGAAAAATCTTATATGATA+TGG - tig0038857:9325-9344 None:intergenic 20.0%
!! AAGATACTGTGATTAATTTA+TGG - tig0038857:9518-9537 None:intergenic 20.0%
!! AACAAGATGATAAATAGTTT+AGG + tig0038857:9751-9770 Msa1457340:intron 20.0%
!! TAAATAGTTTAGGCTATTAT+AGG + tig0038857:9761-9780 Msa1457340:intron 20.0%
!! AAATGTGCAAAAGAATAAAA+AGG + tig0038857:10291-10310 Msa1457340:intron 20.0%
!! TTCAATAAAGATGTGATAAA+GGG - tig0038857:10483-10502 None:intergenic 20.0%
!! ATTCAATAAAGATGTGATAA+AGG - tig0038857:10484-10503 None:intergenic 20.0%
!! TTATCACATCTTTATTGAAT+TGG + tig0038857:10484-10503 Msa1457340:intron 20.0%
!!! TTGTAGCATAGTTTTAAAAA+AGG - tig0038857:10591-10610 None:intergenic 20.0%
!! TTATCTAAATACGTTAGATA+GGG - tig0038857:10698-10717 None:intergenic 20.0%
!! TTACCATTTAAATATGAACA+TGG + tig0038857:10883-10902 Msa1457340:intron 20.0%
!!! ATATATACAACATGTTACTT+GGG - tig0038857:11221-11240 None:intergenic 20.0%
!! TATATATACAACATGTTACT+TGG - tig0038857:11222-11241 None:intergenic 20.0%
!! ATAAAACATCATAGGATTAA+AGG - tig0038857:11270-11289 None:intergenic 20.0%
!! ACTGAAAAACAAATTTCAAA+GGG - tig0038857:11368-11387 None:intergenic 20.0%
!! AACTGAAAAACAAATTTCAA+AGG - tig0038857:11369-11388 None:intergenic 20.0%
!!! TCACTTTTTGAAGTTTGTTT+TGG + tig0038857:6744-6763 Msa1457340:intron 25.0%
! GTTAAGAAACATTGAGTTTA+GGG + tig0038857:7000-7019 Msa1457340:intron 25.0%
!! ACTTCTCTTAAAGTTTTTCT+AGG - tig0038857:7227-7246 None:intergenic 25.0%
! TTAATAAACCATCGTAAGTA+GGG - tig0038857:7624-7643 None:intergenic 25.0%
! TTTAATAAACCATCGTAAGT+AGG - tig0038857:7625-7644 None:intergenic 25.0%
!! TCCTATACATATGGAATTTT+TGG + tig0038857:7704-7723 Msa1457340:intron 25.0%
! ACCAAAAATTCCATATGTAT+AGG - tig0038857:7708-7727 None:intergenic 25.0%
!!! ACGTGTGTTTTATTTTGTAA+TGG + tig0038857:7790-7809 Msa1457340:intron 25.0%
! GAAAAAACATCATCAAACAA+AGG - tig0038857:7854-7873 None:intergenic 25.0%
! GGTTTGAATTATGTAGAATT+TGG + tig0038857:7935-7954 Msa1457340:intron 25.0%
! GAATTATGTAGAATTTGGTT+TGG + tig0038857:7940-7959 Msa1457340:intron 25.0%
! AATGTTGTATGTTTGTTTAC+AGG + tig0038857:7970-7989 Msa1457340:intron 25.0%
! ATCTACATCATTGTTAAAGA+TGG - tig0038857:8230-8249 None:intergenic 25.0%
! TTCAGTGTAATCATATGTAT+TGG - tig0038857:8518-8537 None:intergenic 25.0%
! TTTGTATGATAATCGATAAG+GGG - tig0038857:8792-8811 None:intergenic 25.0%
! GATTTGTATGATAATCGATA+AGG - tig0038857:8794-8813 None:intergenic 25.0%
! TATTAAGCGTTCAATGAAAT+AGG + tig0038857:8828-8847 Msa1457340:intron 25.0%
! ATTAAGCGTTCAATGAAATA+GGG + tig0038857:8829-8848 Msa1457340:intron 25.0%
!! CTTTGAAAATGTAGAAAGTA+GGG - tig0038857:9015-9034 None:intergenic 25.0%
!! ACTTTGAAAATGTAGAAAGT+AGG - tig0038857:9016-9035 None:intergenic 25.0%
!! AAAAAACTTCCTTTTTATCC+TGG - tig0038857:9122-9141 None:intergenic 25.0%
!!! ATCTTTTAGTTAGGAAAACA+TGG - tig0038857:9232-9251 None:intergenic 25.0%
! AATCTTATATGATATGGTGA+AGG - tig0038857:9319-9338 None:intergenic 25.0%
!! CTTTTTATATGCCAATTTTG+TGG + tig0038857:9535-9554 Msa1457340:intron 25.0%
!! ACTTTGAAAAAGGCATAAAT+AGG - tig0038857:9652-9671 None:intergenic 25.0%
!! GTTGTAATGAACTTTGAAAA+AGG - tig0038857:9662-9681 None:intergenic 25.0%
! AAAAATATCTGTCTTAAGGA+TGG - tig0038857:10046-10065 None:intergenic 25.0%
! ACTCAAAAATATCTGTCTTA+AGG - tig0038857:10050-10069 None:intergenic 25.0%
!!! ACAGATATTTTTGAGTAAAG+TGG + tig0038857:10054-10073 Msa1457340:intron 25.0%
! CATCTAAAAATCACATGAAA+AGG - tig0038857:10151-10170 None:intergenic 25.0%
!!! CTTTTCATGTGATTTTTAGA+TGG + tig0038857:10149-10168 Msa1457340:intron 25.0%
! ATCATAGATATTTGATGAGT+TGG - tig0038857:10194-10213 None:intergenic 25.0%
! TCAATAAAGATGTGATAAAG+GGG - tig0038857:10482-10501 None:intergenic 25.0%
!! TATTGAATTGGACTAGAAAA+AGG + tig0038857:10496-10515 Msa1457340:intron 25.0%
! TAAAACTATGCTACAAAAGT+TGG + tig0038857:10595-10614 Msa1457340:intron 25.0%
!! TTTTGCATCATTTACGATTT+TGG + tig0038857:10643-10662 Msa1457340:intron 25.0%
!! TCGGATATTTTCAAAACTAA+GGG - tig0038857:10670-10689 None:intergenic 25.0%
!! ATCGGATATTTTCAAAACTA+AGG - tig0038857:10671-10690 None:intergenic 25.0%
! CTTATCTAAATACGTTAGAT+AGG - tig0038857:10699-10718 None:intergenic 25.0%
!!! GTTGCTTTTGTGATATAAAT+CGG + tig0038857:10766-10785 Msa1457340:intron 25.0%
! TTCAAGCAATGATATTTCTT+TGG - tig0038857:10821-10840 None:intergenic 25.0%
! TAGCCATGTTCATATTTAAA+TGG - tig0038857:10889-10908 None:intergenic 25.0%
! GAAGATACATAAAACATCAT+AGG - tig0038857:11278-11297 None:intergenic 25.0%
! TATGTATCTTCTACAGTTTA+AGG + tig0038857:11287-11306 Msa1457340:three_prime_UTR 25.0%
!! TGCAGAAAGTACAAAATAAT+AGG - tig0038857:11324-11343 None:intergenic 25.0%
!!! AAATTTGTTTTTCAGTTCTC+TGG + tig0038857:11372-11391 Msa1457340:three_prime_UTR 25.0%
!! AACTAGTTGTTGATTATAGA+TGG + tig0038857:11426-11445 Msa1457340:three_prime_UTR 25.0%
! AACATTTACAACATGTTATG+TGG - tig0038857:11463-11482 None:intergenic 25.0%
AAGACAATTTCCTCAACTTT+AGG + tig0038857:6015-6034 Msa1457340:five_prime_UTR 30.0%
!!! GTTTTGTTTACCTAAAGTTG+AGG - tig0038857:6028-6047 None:intergenic 30.0%
! AACAAGTGTTGTAATGAGAA+TGG - tig0038857:6063-6082 None:intergenic 30.0%
TTTGTGTTTGTGTTTGTGTT+GGG - tig0038857:6167-6186 None:intergenic 30.0%
TCTAAGTCAATTATAACTGG+TGG - tig0038857:6265-6284 None:intergenic 30.0%
!!! TGGATTCAGAGTTTTTTGAT+GGG + tig0038857:6500-6519 Msa1457340:CDS 30.0%
!!! ATAAACCTTTTAGCTCTCTT+AGG - tig0038857:6688-6707 None:intergenic 30.0%
GGTTAAGAAACATTGAGTTT+AGG + tig0038857:6999-7018 Msa1457340:intron 30.0%
AGAGAGAAGATTATGTAGTT+AGG + tig0038857:7153-7172 Msa1457340:intron 30.0%
TGTCAAATTACTACAAGTAG+AGG + tig0038857:7197-7216 Msa1457340:intron 30.0%
! TTTACCTAATTTGTGAGTCA+TGG + tig0038857:7492-7511 Msa1457340:intron 30.0%
TTAACCATGACTCACAAATT+AGG - tig0038857:7499-7518 None:intergenic 30.0%
CGATTCTAAGTTTAGAAGTT+TGG + tig0038857:7667-7686 Msa1457340:intron 30.0%
! AAGTTTAGAAGTTTGGAATC+TGG + tig0038857:7674-7693 Msa1457340:intron 30.0%
GGAAGTTAATCCTATACATA+TGG + tig0038857:7695-7714 Msa1457340:intron 30.0%
!! TTGCAGTTGATTCTAAGATT+AGG + tig0038857:7912-7931 Msa1457340:intron 30.0%
!! TGCAGTTGATTCTAAGATTA+GGG + tig0038857:7913-7932 Msa1457340:intron 30.0%
TTTACAGGATTCTTGCTAAT+AGG + tig0038857:7985-8004 Msa1457340:intron 30.0%
AAAGGAAATAACATACCTGA+AGG - tig0038857:8121-8140 None:intergenic 30.0%
TTCAGAACAGTGAAATGAAA+AGG - tig0038857:8139-8158 None:intergenic 30.0%
TGTTTGTAACATGTTCTTGT+TGG + tig0038857:8188-8207 Msa1457340:intron 30.0%
ACATCATTGTTAAAGATGGA+GGG - tig0038857:8226-8245 None:intergenic 30.0%
TACATCATTGTTAAAGATGG+AGG - tig0038857:8227-8246 None:intergenic 30.0%
GCATATACTTGGTATTATGT+GGG - tig0038857:8303-8322 None:intergenic 30.0%
TGCATATACTTGGTATTATG+TGG - tig0038857:8304-8323 None:intergenic 30.0%
GGTTGTAACGCAAATTATAT+AGG - tig0038857:8430-8449 None:intergenic 30.0%
! GTAATCATATGTATTGGTGT+CGG - tig0038857:8512-8531 None:intergenic 30.0%
GAAAAGTTCAGATGATATGT+AGG - tig0038857:8678-8697 None:intergenic 30.0%
! TTCACATTCCTCTTTTATCA+AGG + tig0038857:8706-8725 Msa1457340:intron 30.0%
! TCACATTCCTCTTTTATCAA+GGG + tig0038857:8707-8726 Msa1457340:intron 30.0%
TTAAGTAGTCTCAGGTTTAA+TGG - tig0038857:8892-8911 None:intergenic 30.0%
TGGAAATATAAGCACGTAAT+TGG - tig0038857:9073-9092 None:intergenic 30.0%
! TCCACAAAATTTTACGTAGA+TGG + tig0038857:9089-9108 Msa1457340:intron 30.0%
! ACCATCTACGTAAAATTTTG+TGG - tig0038857:9093-9112 None:intergenic 30.0%
CAATCATGCTTACGAAAAAT+TGG + tig0038857:9187-9206 Msa1457340:intron 30.0%
TCATCACAATACCACAAAAT+TGG - tig0038857:9549-9568 None:intergenic 30.0%
TTCTACTAAAGTGACGTAAA+AGG - tig0038857:9616-9635 None:intergenic 30.0%
CTTAAAACGACAACTACAAA+GGG + tig0038857:9838-9857 Msa1457340:intron 30.0%
TTAAAACGACAACTACAAAG+GGG + tig0038857:9839-9858 Msa1457340:intron 30.0%
TCAAGGATTATTCCATTTAG+TGG + tig0038857:9878-9897 Msa1457340:intron 30.0%
TCAATAGTCAGAAAACTCAA+AGG - tig0038857:9915-9934 None:intergenic 30.0%
! TGACTATTGACTATGTTAGA+GGG + tig0038857:9925-9944 Msa1457340:intron 30.0%
!! CATGTGATTTTTAGATGGAT+AGG + tig0038857:10154-10173 Msa1457340:intron 30.0%
!!! AAGCAAAATCCACTTTTTGA+TGG - tig0038857:10458-10477 None:intergenic 30.0%
!! AGTTGGCTTAAATACAGTTT+TGG + tig0038857:10612-10631 Msa1457340:intron 30.0%
TACGTTAGATAGGGAAAAAT+CGG - tig0038857:10689-10708 None:intergenic 30.0%
!!! GCAAAAGTGTTTTGCAAAAA+TGG - tig0038857:10850-10869 None:intergenic 30.0%
CAACATCAAAGTAGATGATT+TGG + tig0038857:11178-11197 Msa1457340:three_prime_UTR 30.0%
!! TGTACTTTCTGCAGTTTTAT+AGG + tig0038857:11331-11350 Msa1457340:three_prime_UTR 30.0%
! TAGTTGTTGATTATAGATGG+TGG + tig0038857:11429-11448 Msa1457340:three_prime_UTR 30.0%
! TTGATTATAGATGGTGGTTA+TGG + tig0038857:11435-11454 Msa1457340:three_prime_UTR 30.0%
ATGAGAATGGAACTTGACTT+TGG - tig0038857:6050-6069 None:intergenic 35.0%
GTTTGTGTTTGTGTTTGTGT+TGG - tig0038857:6168-6187 None:intergenic 35.0%
! GGTTTTCTTGTGAAGTTGTT+TGG - tig0038857:6241-6260 None:intergenic 35.0%
AAGTCAATTATAACTGGTGG+TGG - tig0038857:6262-6281 None:intergenic 35.0%
!!! GTGGATTCAGAGTTTTTTGA+TGG + tig0038857:6499-6518 Msa1457340:CDS 35.0%
!!! TCAGAGTTTTTTGATGGGTT+AGG + tig0038857:6505-6524 Msa1457340:CDS 35.0%
!!! CAGAGTTTTTTGATGGGTTA+GGG + tig0038857:6506-6525 Msa1457340:CDS 35.0%
!!! TTTTTTGATGGGTTAGGGTT+TGG + tig0038857:6511-6530 Msa1457340:CDS 35.0%
ACATAGGTATAGTAGTTCCA+TGG + tig0038857:6573-6592 Msa1457340:CDS 35.0%
TTGATCCTAAGAGAGCTAAA+AGG + tig0038857:6680-6699 Msa1457340:CDS 35.0%
TGAGATAGTAGGATAAGACT+TGG + tig0038857:6932-6951 Msa1457340:intron 35.0%
! GTGACTTAATTTGACTCAGT+TGG + tig0038857:6978-6997 Msa1457340:intron 35.0%
AAGAAACATTGAGTTTAGGG+TGG + tig0038857:7003-7022 Msa1457340:intron 35.0%
! AGAAACATTGAGTTTAGGGT+GGG + tig0038857:7004-7023 Msa1457340:intron 35.0%
TAAAGAAACCATCGCGAATA+GGG - tig0038857:7087-7106 None:intergenic 35.0%
TTAAAGAAACCATCGCGAAT+AGG - tig0038857:7088-7107 None:intergenic 35.0%
! TATGTGTTTATGATCGGCTT+AGG + tig0038857:7116-7135 Msa1457340:intron 35.0%
! ATGTGTTTATGATCGGCTTA+GGG + tig0038857:7117-7136 Msa1457340:intron 35.0%
AGTTAGGAGAGTAAATCAGA+TGG + tig0038857:7169-7188 Msa1457340:intron 35.0%
AGTCTCTAACTGAAGTTTGT+CGG + tig0038857:7430-7449 Msa1457340:intron 35.0%
! TTAAGCAGTGTTGAGTTTGT+GGG + tig0038857:7515-7534 Msa1457340:intron 35.0%
AGTCTCGTACTAAAGTTTCT+TGG + tig0038857:7567-7586 Msa1457340:intron 35.0%
GTCTCGTACTAAAGTTTCTT+GGG + tig0038857:7568-7587 Msa1457340:intron 35.0%
TGACTAAAACCAATCGTGTT+TGG + tig0038857:7731-7750 Msa1457340:intron 35.0%
GACTAAAACCAATCGTGTTT+GGG + tig0038857:7732-7751 Msa1457340:intron 35.0%
ATCAAATTCCCAAACACGAT+TGG - tig0038857:7743-7762 None:intergenic 35.0%
!! GCAGTTGATTCTAAGATTAG+GGG + tig0038857:7914-7933 Msa1457340:intron 35.0%
TTGTAACATGTTCTTGTTGG+TGG + tig0038857:8191-8210 Msa1457340:intron 35.0%
!! ATGTTCTTGTTGGTGGTTTA+TGG + tig0038857:8198-8217 Msa1457340:intron 35.0%
ACATGCAACATGCATATACT+TGG - tig0038857:8314-8333 None:intergenic 35.0%
TATGCATGTTGCATGTGTAT+AGG + tig0038857:8318-8337 Msa1457340:intron 35.0%
CTGTACTCATAACTTTGAAC+TGG + tig0038857:8644-8663 Msa1457340:intron 35.0%
! CACATTCCTCTTTTATCAAG+GGG + tig0038857:8708-8727 Msa1457340:intron 35.0%
! ACATTCCTCTTTTATCAAGG+GGG + tig0038857:8709-8728 Msa1457340:intron 35.0%
AATTACCCCCTTGATAAAAG+AGG - tig0038857:8717-8736 None:intergenic 35.0%
GTTTCAGATTAAGTAGTCTC+AGG - tig0038857:8900-8919 None:intergenic 35.0%
! ATTATCCGTCTTCTGTTTTG+TGG + tig0038857:8950-8969 Msa1457340:intron 35.0%
CTAAACCACAAAACAGAAGA+CGG - tig0038857:8958-8977 None:intergenic 35.0%
! AATTTTACGTAGATGGTCCT+AGG + tig0038857:9096-9115 Msa1457340:intron 35.0%
TGAATCGAGGAAAATAGGAT+TGG - tig0038857:9161-9180 None:intergenic 35.0%
!! CTGCAGTACATCTTTTAGTT+AGG - tig0038857:9241-9260 None:intergenic 35.0%
TGAAGGCTCGACTTATAATT+AGG - tig0038857:9302-9321 None:intergenic 35.0%
CCTACTTCAACGATGTAAAA+TGG - tig0038857:9351-9370 None:intergenic 35.0%
! CCATTTTACATCGTTGAAGT+AGG + tig0038857:9348-9367 Msa1457340:intron 35.0%
TTTACATCGTTGAAGTAGGT+TGG + tig0038857:9352-9371 Msa1457340:intron 35.0%
! TTTTCTGATCCATAATCCGA+TGG + tig0038857:9379-9398 Msa1457340:intron 35.0%
TAATAACTAACTGTCGCTAC+TGG + tig0038857:9456-9475 Msa1457340:intron 35.0%
!!! CCTTTGTAGTTGTCGTTTTA+AGG - tig0038857:9840-9859 None:intergenic 35.0%
CCTTAAAACGACAACTACAA+AGG + tig0038857:9837-9856 Msa1457340:intron 35.0%
GAACTAAGAAGACCACTAAA+TGG - tig0038857:9893-9912 None:intergenic 35.0%
! CTGACTATTGACTATGTTAG+AGG + tig0038857:9924-9943 Msa1457340:intron 35.0%
GAGTAAAGTGGTAATTATCC+AGG + tig0038857:10066-10085 Msa1457340:intron 35.0%
TCTGTAATCCAACAAACCAA+GGG - tig0038857:10110-10129 None:intergenic 35.0%
ATCTGTAATCCAACAAACCA+AGG - tig0038857:10111-10130 None:intergenic 35.0%
!! GTGATTTTTAGATGGATAGG+TGG + tig0038857:10157-10176 Msa1457340:intron 35.0%
! AGATATTTGATGAGTTGGAG+TGG - tig0038857:10189-10208 None:intergenic 35.0%
TGATTTGACTGCTCAGAATA+AGG + tig0038857:10355-10374 Msa1457340:CDS 35.0%
TTTCTCGATCCATCAAAAAG+TGG + tig0038857:10446-10465 Msa1457340:intron 35.0%
CGTAAATGATGCAAAATAGC+AGG - tig0038857:10639-10658 None:intergenic 35.0%
AAAGTGTGACATTGTCTAAG+TGG - tig0038857:10739-10758 None:intergenic 35.0%
GCTGGTAATCCTTCATTTAA+CGG + tig0038857:10993-11012 Msa1457340:CDS 35.0%
CTGGTAATCCTTCATTTAAC+GGG + tig0038857:10994-11013 Msa1457340:CDS 35.0%
!! TGTTGTATACGAGCTACTTT+TGG - tig0038857:11163-11182 None:intergenic 35.0%
!! TTTGTTTTTCAGTTCTCTGG+TGG + tig0038857:11375-11394 Msa1457340:three_prime_UTR 35.0%
! AGAAGAGAGAGAGAGTTTTC+AGG - tig0038857:6107-6126 None:intergenic 40.0%
TTGTGTTTGTGTTGGGAACT+TGG - tig0038857:6160-6179 None:intergenic 40.0%
AGGTATAGTAGTTCCATGGA+TGG + tig0038857:6577-6596 Msa1457340:CDS 40.0%
GGTATAGTAGTTCCATGGAT+GGG + tig0038857:6578-6597 Msa1457340:CDS 40.0%
TGGTGTGAAGAAATCTATGC+CGG + tig0038857:6630-6649 Msa1457340:CDS 40.0%
ACTATCTCAAGTCAGCTACA+TGG - tig0038857:6921-6940 None:intergenic 40.0%
!! TGTAGCTGACTTGAGATAGT+AGG + tig0038857:6921-6940 Msa1457340:intron 40.0%
! GAAACATTGAGTTTAGGGTG+GGG + tig0038857:7005-7024 Msa1457340:intron 40.0%
! AAACATTGAGTTTAGGGTGG+GGG + tig0038857:7006-7025 Msa1457340:intron 40.0%
TAGGAGAGTAAATCAGATGG+AGG + tig0038857:7172-7191 Msa1457340:intron 40.0%
AGGAGAGTAAATCAGATGGA+GGG + tig0038857:7173-7192 Msa1457340:intron 40.0%
ATGTAATGTACCCCACTTAG+TGG + tig0038857:7297-7316 Msa1457340:intron 40.0%
TGTAATGTACCCCACTTAGT+GGG + tig0038857:7298-7317 Msa1457340:intron 40.0%
AACTGTAATCCCACTAAGTG+GGG - tig0038857:7310-7329 None:intergenic 40.0%
CAACTGTAATCCCACTAAGT+GGG - tig0038857:7311-7330 None:intergenic 40.0%
TCAACTGTAATCCCACTAAG+TGG - tig0038857:7312-7331 None:intergenic 40.0%
GTCTCTAACTGAAGTTTGTC+GGG + tig0038857:7431-7450 Msa1457340:intron 40.0%
! GTTAAGCAGTGTTGAGTTTG+TGG + tig0038857:7514-7533 Msa1457340:intron 40.0%
GTCAAATACCCTACTTACGA+TGG + tig0038857:7613-7632 Msa1457340:intron 40.0%
AACTCGATATACAAGTGAGC+TGG + tig0038857:8037-8056 Msa1457340:CDS 40.0%
!!! TCAGATTTTGAGTTGTGACC+CGG + tig0038857:8259-8278 Msa1457340:intron 40.0%
TTCCATAAACAGTTGTGACC+GGG - tig0038857:8280-8299 None:intergenic 40.0%
GTTCCATAAACAGTTGTGAC+CGG - tig0038857:8281-8300 None:intergenic 40.0%
GTTGCATGTGTATAGGTACT+AGG + tig0038857:8325-8344 Msa1457340:intron 40.0%
CATGTGTATAGGTACTAGGT+AGG + tig0038857:8329-8348 Msa1457340:intron 40.0%
AGTACAGTGTCCAAATGCAA+GGG - tig0038857:8631-8650 None:intergenic 40.0%
TGGTTCACAATCAGAATCAG+TGG - tig0038857:8872-8891 None:intergenic 40.0%
GGGAAGATGTTTAATGACAC+TGG - tig0038857:8995-9014 None:intergenic 40.0%
! TCGAGGAAAATAGGATTGGT+TGG - tig0038857:9157-9176 None:intergenic 40.0%
ACAGCTGAATCGAGGAAAAT+AGG - tig0038857:9166-9185 None:intergenic 40.0%
GCTCGACTTATAATTAGGCA+TGG - tig0038857:9297-9316 None:intergenic 40.0%
GATTCTTTGTGTATTCCGTC+TGG + tig0038857:9589-9608 Msa1457340:intron 40.0%
GAGCAATGTTGGAATTCTCA+AGG + tig0038857:9861-9880 Msa1457340:intron 40.0%
AGGGCTTTCTTCCATAATAC+TGG + tig0038857:9944-9963 Msa1457340:intron 40.0%
GGGCTTTCTTCCATAATACT+GGG + tig0038857:9945-9964 Msa1457340:intron 40.0%
TCCATAATACTGGGAGAGAT+TGG + tig0038857:9954-9973 Msa1457340:intron 40.0%
CTGTAATCCAACAAACCAAG+GGG - tig0038857:10109-10128 None:intergenic 40.0%
! TTTGATGAGTTGGAGTGGTT+GGG - tig0038857:10184-10203 None:intergenic 40.0%
! ATTTGATGAGTTGGAGTGGT+TGG - tig0038857:10185-10204 None:intergenic 40.0%
ATTCTGAGCAGTCAAATCAG+TGG - tig0038857:10354-10373 None:intergenic 40.0%
CAACAAGCAAAGCTTAGAGA+AGG + tig0038857:10407-10426 Msa1457340:CDS 40.0%
AGAAAGAACTTCAACGCCTT+AGG + tig0038857:10943-10962 Msa1457340:CDS 40.0%
GAAAGAACTTCAACGCCTTA+GGG + tig0038857:10944-10963 Msa1457340:CDS 40.0%
! AATGATTCTTTTGCGCCCTA+AGG - tig0038857:10962-10981 None:intergenic 40.0%
GAGAACATCCCGTTAAATGA+AGG - tig0038857:11005-11024 None:intergenic 40.0%
AGGATTACTCATCTGTTGCA+TGG - tig0038857:11048-11067 None:intergenic 40.0%
!!! GAGAGAGTTTTCAGGTGGTT+GGG - tig0038857:6099-6118 None:intergenic 45.0%
!!! AGAGAGAGTTTTCAGGTGGT+TGG - tig0038857:6100-6119 None:intergenic 45.0%
!! AGAGAGAGAGAGTTTTCAGG+TGG - tig0038857:6104-6123 None:intergenic 45.0%
TTGTGTTGGGAACTTGGAAG+TGG - tig0038857:6154-6173 None:intergenic 45.0%
AAAACATGCCACCATCACGT+GGG + tig0038857:6284-6303 Msa1457340:CDS 45.0%
ATGGACTCATCAGAGTCCAT+CGG - tig0038857:6436-6455 None:intergenic 45.0%
ATGGACTCTGATGAGTCCAT+CGG + tig0038857:6436-6455 Msa1457340:CDS 45.0%
!! TTTGATGGGTTAGGGTTTGG+TGG + tig0038857:6514-6533 Msa1457340:CDS 45.0%
AAGGGGAAAAGGTTGAAGAG+AGG + tig0038857:6539-6558 Msa1457340:CDS 45.0%
GGAAAAGGTTGAAGAGAGGA+AGG + tig0038857:6543-6562 Msa1457340:CDS 45.0%
AGAGGAAGGTGAGTAGACAT+AGG + tig0038857:6557-6576 Msa1457340:CDS 45.0%
! GAGATGGGGTTGTTTGAAGT+TGG + tig0038857:6604-6623 Msa1457340:CDS 45.0%
!! GGGTTGTTTGAAGTTGGTGA+TGG + tig0038857:6610-6629 Msa1457340:CDS 45.0%
AGTTCAGCAAGTTTCTCAGC+CGG - tig0038857:6652-6671 None:intergenic 45.0%
! AACATTGAGTTTAGGGTGGG+GGG + tig0038857:7007-7026 Msa1457340:intron 45.0%
! TATGATCGGCTTAGGGAGTT+TGG + tig0038857:7124-7143 Msa1457340:intron 45.0%
! ATGATCGGCTTAGGGAGTTT+GGG + tig0038857:7125-7144 Msa1457340:intron 45.0%
TGTAGCCAATCTCTGTGACT+CGG + tig0038857:7344-7363 Msa1457340:intron 45.0%
GTTAAGCGACACTCAGTTTG+TGG + tig0038857:7370-7389 Msa1457340:intron 45.0%
AAGTTTGTCGGGATACTCTG+AGG + tig0038857:7442-7461 Msa1457340:intron 45.0%
GGATACTATGACGAGCATCT+GGG + tig0038857:7589-7608 Msa1457340:intron 45.0%
GATATACAAGTGAGCTGGAG+AGG + tig0038857:8042-8061 Msa1457340:CDS 45.0%
TGCACAACTTACAGTCCTTC+AGG + tig0038857:8103-8122 Msa1457340:CDS 45.0%
GCGTTACAACCTATGAAGCA+CGG + tig0038857:8439-8458 Msa1457340:intron 45.0%
AACGACACATGTTCGACAAC+AGG - tig0038857:8487-8506 None:intergenic 45.0%
AACCTATGAAGCACAGACAC+AGG - tig0038857:8597-8616 None:intergenic 45.0%
GAGTACAGTGTCCAAATGCA+AGG - tig0038857:8632-8651 None:intergenic 45.0%
! CTTCCTTTTTATCCTGGCCT+AGG - tig0038857:9116-9135 None:intergenic 45.0%
ATGATTGCACAGCTGAATCG+AGG - tig0038857:9174-9193 None:intergenic 45.0%
!! AAAGGAGTGCCATCGGATTA+TGG - tig0038857:9391-9410 None:intergenic 45.0%
AGTGACGTAAAAGGACCAGA+CGG - tig0038857:9607-9626 None:intergenic 45.0%
ACTACAAAGGGGAGCAATGT+TGG + tig0038857:9850-9869 Msa1457340:intron 45.0%
GCCAATCTCTCCCAGTATTA+TGG - tig0038857:9958-9977 None:intergenic 45.0%
TGAAATTAACAGCGTGCGAG+AGG - tig0038857:10254-10273 None:intergenic 45.0%
! AAGCTTTGCTTGTTGCTCGA+AGG - tig0038857:10402-10421 None:intergenic 45.0%
! AAGGGTTGATCAGAACGAGA+AGG - tig0038857:11101-11120 None:intergenic 45.0%
CGTTCTGATCAACCCTTCAA+CGG + tig0038857:11104-11123 Msa1457340:CDS 45.0%
TGTTGGGAACTTGGAAGTGG+TGG - tig0038857:6151-6170 None:intergenic 50.0%
GAAAACATGCCACCATCACG+TGG + tig0038857:6283-6302 Msa1457340:CDS 50.0%
AGGTGGTGTCTGAGTGAGAA+CGG - tig0038857:6321-6340 None:intergenic 50.0%
!! GAAGTTTGCTGCGAAACGGA+AGG - tig0038857:6341-6360 None:intergenic 50.0%
!! CGTCGAAGTTTGCTGCGAAA+CGG - tig0038857:6345-6364 None:intergenic 50.0%
TTGGAGATGTCGAAGTCGGA+CGG - tig0038857:6385-6404 None:intergenic 50.0%
GAGGTTGGAGATGTCGAAGT+CGG - tig0038857:6389-6408 None:intergenic 50.0%
TGGACTCATCAGAGTCCATC+GGG - tig0038857:6435-6454 None:intergenic 50.0%
TGGACTCTGATGAGTCCATC+GGG + tig0038857:6437-6456 Msa1457340:CDS 50.0%
GCATCTCAGGAGTTTGTCTG+TGG + tig0038857:6480-6499 Msa1457340:CDS 50.0%
!! GGTTAGGGTTTGGTGGTGAA+GGG + tig0038857:6521-6540 Msa1457340:CDS 50.0%
!! GTTAGGGTTTGGTGGTGAAG+GGG + tig0038857:6522-6541 Msa1457340:CDS 50.0%
!! GTTTGGTGGTGAAGGGGAAA+AGG + tig0038857:6528-6547 Msa1457340:CDS 50.0%
TTCCATGGATGGGTCTGAGA+TGG + tig0038857:6588-6607 Msa1457340:CDS 50.0%
! TCCATGGATGGGTCTGAGAT+GGG + tig0038857:6589-6608 Msa1457340:CDS 50.0%
ACCATCGCGAATAGGGTCTT+TGG - tig0038857:7080-7099 None:intergenic 50.0%
ACCAACCGAGTCACAGAGAT+TGG - tig0038857:7352-7371 None:intergenic 50.0%
AAGCGACACTCAGTTTGTGG+TGG + tig0038857:7373-7392 Msa1457340:intron 50.0%
AGCGACACTCAGTTTGTGGT+GGG + tig0038857:7374-7393 Msa1457340:intron 50.0%
GGAGGACTGAGGTTTGAACT+CGG + tig0038857:7397-7416 Msa1457340:intron 50.0%
! AGCAGTGTTGAGTTTGTGGG+TGG + tig0038857:7518-7537 Msa1457340:intron 50.0%
!! TTGAGTTTGTGGGTGGACTG+AGG + tig0038857:7525-7544 Msa1457340:intron 50.0%
GGGATACTATGACGAGCATC+TGG + tig0038857:7588-7607 Msa1457340:intron 50.0%
CTGCTGCACGATCAAAAGAG+AGG + tig0038857:8012-8031 Msa1457340:CDS 50.0%
GGACTGTAAGTTGTGCAGAG+AGG - tig0038857:8100-8119 None:intergenic 50.0%
GACCCGGTCACAACTGTTTA+TGG + tig0038857:8275-8294 Msa1457340:intron 50.0%
GTCCTGTGTCTGTGCTTCAT+AGG + tig0038857:8592-8611 Msa1457340:intron 50.0%
CTACACGCTTCCCTTGCATT+TGG + tig0038857:8618-8637 Msa1457340:intron 50.0%
GGTCCTAGGCCAGGATAAAA+AGG + tig0038857:9110-9129 Msa1457340:intron 50.0%
!! ACCATGGAAAGGAGTGCCAT+CGG - tig0038857:9398-9417 None:intergenic 50.0%
ATCCAGGCATTCAACCCACA+TGG + tig0038857:10082-10101 Msa1457340:intron 50.0%
ACAAACCAAGGGGACCATGT+GGG - tig0038857:10099-10118 None:intergenic 50.0%
AACAAACCAAGGGGACCATG+TGG - tig0038857:10100-10119 None:intergenic 50.0%
!! ACATGGTCCCCTTGGTTTGT+TGG + tig0038857:10099-10118 Msa1457340:intron 50.0%
GGTTGATCAGAACGAGAAGG+TGG - tig0038857:11098-11117 None:intergenic 50.0%
TCGTGGTCGCTCTAACTTCA+TGG + tig0038857:11127-11146 Msa1457340:CDS 50.0%
!! AGTGGTGGTGGTGGTTGAAG+TGG - tig0038857:6136-6155 None:intergenic 55.0%
!! GAACTTGGAAGTGGTGGTGG+TGG - tig0038857:6145-6164 None:intergenic 55.0%
TGGGAACTTGGAAGTGGTGG+TGG - tig0038857:6148-6167 None:intergenic 55.0%
TGGTGTCTGAGTGAGAACGG+CGG - tig0038857:6318-6337 None:intergenic 55.0%
! GTTTGCTGCGAAACGGAAGG+TGG - tig0038857:6338-6357 None:intergenic 55.0%
TGGAGATGTCGAAGTCGGAC+GGG - tig0038857:6384-6403 None:intergenic 55.0%
ATCGGGAAGTCAGCGTCAGA+GGG + tig0038857:6454-6473 Msa1457340:CDS 55.0%
!! GGGTTAGGGTTTGGTGGTGA+AGG + tig0038857:6520-6539 Msa1457340:CDS 55.0%
! CCATGGATGGGTCTGAGATG+GGG + tig0038857:6590-6609 Msa1457340:CDS 55.0%
! ATTGAGTTTAGGGTGGGGGG+AGG + tig0038857:7010-7029 Msa1457340:intron 55.0%
! TTGAGTTTAGGGTGGGGGGA+GGG + tig0038857:7011-7030 Msa1457340:intron 55.0%
!! GGTTTGTTGGGGGTGCTCTA+AGG + tig0038857:7042-7061 Msa1457340:intron 55.0%
GCCAAAGACCCTATTCGCGA+TGG + tig0038857:7076-7095 Msa1457340:intron 55.0%
!! GCCAATCTCTGTGACTCGGT+TGG + tig0038857:7348-7367 Msa1457340:intron 55.0%
GCGACACTCAGTTTGTGGTG+GGG + tig0038857:7375-7394 Msa1457340:intron 55.0%
CGACACTCAGTTTGTGGTGG+GGG + tig0038857:7376-7395 Msa1457340:intron 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG - tig0038857:8451-8470 None:intergenic 55.0%
ATGAAGCACGGACACTCCTC+AGG + tig0038857:8451-8470 Msa1457340:intron 55.0%
AACAGGACACGCCTAACCTG+AGG - tig0038857:8470-8489 None:intergenic 55.0%
TACGTAGATGGTCCTAGGCC+AGG + tig0038857:9101-9120 Msa1457340:intron 55.0%
TCCGATGGCACTCCTTTCCA+TGG + tig0038857:9394-9413 Msa1457340:intron 55.0%
CACTCCTTTCCATGGTGCAG+CGG + tig0038857:9402-9421 Msa1457340:intron 55.0%
! GACCATGTGGGTTGAATGCC+TGG - tig0038857:10087-10106 None:intergenic 55.0%
TTCAACCCACATGGTCCCCT+TGG + tig0038857:10091-10110 Msa1457340:intron 55.0%
ATGCCAGGTTGTGTCTGCTG+GGG - tig0038857:11074-11093 None:intergenic 55.0%
CATGCCAGGTTGTGTCTGCT+GGG - tig0038857:11075-11094 None:intergenic 55.0%
GATCAACCCTTCAACGGTCG+TGG + tig0038857:11110-11129 Msa1457340:CDS 55.0%
TGAGTGAGAACGGCGGTGGT+GGG - tig0038857:6311-6330 None:intergenic 60.0%
TGTCTGAGTGAGAACGGCGG+TGG - tig0038857:6315-6334 None:intergenic 60.0%
AGGGGATGGAAGAGGGAGGT+TGG - tig0038857:6404-6423 None:intergenic 60.0%
CAGCGTCAGGGGATGGAAGA+GGG - tig0038857:6411-6430 None:intergenic 60.0%
ACAGCGTCAGGGGATGGAAG+AGG - tig0038857:6412-6431 None:intergenic 60.0%
AGTCCATCGGGACAGCGTCA+GGG - tig0038857:6423-6442 None:intergenic 60.0%
!! CTCTGACGCTGACTTCCCGA+TGG - tig0038857:6455-6474 None:intergenic 60.0%
CATCGGGAAGTCAGCGTCAG+AGG + tig0038857:6453-6472 Msa1457340:CDS 60.0%
GGAAGTCAGCGTCAGAGGGA+CGG + tig0038857:6458-6477 Msa1457340:CDS 60.0%
CCCCATCTCAGACCCATCCA+TGG - tig0038857:6593-6612 None:intergenic 60.0%
! TGAGTTTAGGGTGGGGGGAG+GGG + tig0038857:7012-7031 Msa1457340:intron 60.0%
!! AGGGGGCGCTGAGGTTTGTT+GGG + tig0038857:7030-7049 Msa1457340:intron 60.0%
! CACTCAGTTTGTGGTGGGGG+AGG + tig0038857:7379-7398 Msa1457340:intron 60.0%
! TTTGTGGTGGGGGAGGACTG+AGG + tig0038857:7386-7405 Msa1457340:intron 60.0%
GCACGGACACTCCTCAGGTT+AGG + tig0038857:8456-8475 Msa1457340:intron 60.0%
CATGCCGCTGCACCATGGAA+AGG - tig0038857:9409-9428 None:intergenic 60.0%
GGTTGTGTCTGCTGGGGTTG+AGG - tig0038857:11068-11087 None:intergenic 60.0%
CAACCCCAGCAGACACAACC+TGG + tig0038857:11068-11087 Msa1457340:CDS 60.0%
GCATGCCAGGTTGTGTCTGC+TGG - tig0038857:11076-11095 None:intergenic 60.0%
GAACGAGAAGGTGGCATGCC+AGG - tig0038857:11089-11108 None:intergenic 60.0%
GAGCGACCACGACCGTTGAA+GGG - tig0038857:11119-11138 None:intergenic 60.0%
AGAGCGACCACGACCGTTGA+AGG - tig0038857:11120-11139 None:intergenic 60.0%
! TGGTGGGTCCCACGTGATGG+TGG - tig0038857:6295-6314 None:intergenic 65.0%
CTGAGTGAGAACGGCGGTGG+TGG - tig0038857:6312-6331 None:intergenic 65.0%
AGTCGGACGGGTCGAAGGTG+AGG - tig0038857:6372-6391 None:intergenic 65.0%
GTCGAAGTCGGACGGGTCGA+AGG - tig0038857:6377-6396 None:intergenic 65.0%
CGTCAGGGGATGGAAGAGGG+AGG - tig0038857:6408-6427 None:intergenic 65.0%
ATCGGGACAGCGTCAGGGGA+TGG - tig0038857:6418-6437 None:intergenic 65.0%
ATCCCCTGACGCTGTCCCGA+TGG + tig0038857:6417-6436 Msa1457340:CDS 65.0%
GTCCATCGGGACAGCGTCAG+GGG - tig0038857:6422-6441 None:intergenic 65.0%
GAGTCCATCGGGACAGCGTC+AGG - tig0038857:6424-6443 None:intergenic 65.0%
CGTCAGAGGGACGGCATCTC+AGG + tig0038857:6467-6486 Msa1457340:CDS 65.0%
! GAGTTTAGGGTGGGGGGAGG+GGG + tig0038857:7013-7032 Msa1457340:intron 65.0%
!! GAGGGGGCGCTGAGGTTTGT+TGG + tig0038857:7029-7048 Msa1457340:intron 65.0%
!! GGGGGCGCTGAGGTTTGTTG+GGG + tig0038857:7031-7050 Msa1457340:intron 65.0%
!! GGGGCGCTGAGGTTTGTTGG+GGG + tig0038857:7032-7051 Msa1457340:intron 65.0%
!! GGGGTGCTCTAAGGCGTGTC+TGG + tig0038857:7051-7070 Msa1457340:intron 65.0%
GCACTCATGCCGCTGCACCA+TGG - tig0038857:9414-9433 None:intergenic 65.0%
!! CGGTGGTGGGTCCCACGTGA+TGG - tig0038857:6298-6317 None:intergenic 70.0%
!!! GGTGGGGGGAGGGGGCGCTG+AGG + tig0038857:7021-7040 Msa1457340:intron 85.0%
Chromosome Type Strat End Strand Name
tig0038857 gene 5990 11495 5990 ID=Msa1457340;Name=Msa1457340
tig0038857 mRNA 5990 11495 5990 ID=Msa1457340-mRNA-1;Parent=Msa1457340;Name=Msa1457340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=242|1|1|1|1|1|4|326|310
tig0038857 exon 5990 6701 5990 ID=Msa1457340-mRNA-1:exon:21077;Parent=Msa1457340-mRNA-1
tig0038857 exon 7992 8124 7992 ID=Msa1457340-mRNA-1:exon:21078;Parent=Msa1457340-mRNA-1
tig0038857 exon 10344 10428 10344 ID=Msa1457340-mRNA-1:exon:21079;Parent=Msa1457340-mRNA-1
tig0038857 exon 10925 11495 10925 ID=Msa1457340-mRNA-1:exon:21080;Parent=Msa1457340-mRNA-1
tig0038857 five_prime_UTR 5990 6231 5990 ID=Msa1457340-mRNA-1:five_prime_utr;Parent=Msa1457340-mRNA-1
tig0038857 CDS 6232 6701 6232 ID=Msa1457340-mRNA-1:cds;Parent=Msa1457340-mRNA-1
tig0038857 CDS 7992 8124 7992 ID=Msa1457340-mRNA-1:cds;Parent=Msa1457340-mRNA-1
tig0038857 CDS 10344 10428 10344 ID=Msa1457340-mRNA-1:cds;Parent=Msa1457340-mRNA-1
tig0038857 CDS 10925 11169 10925 ID=Msa1457340-mRNA-1:cds;Parent=Msa1457340-mRNA-1
tig0038857 three_prime_UTR 11170 11495 11170 ID=Msa1457340-mRNA-1:three_prime_utr;Parent=Msa1457340-mRNA-1
Gene Sequence

>Msa1457340

ATGGAACCAAACAACTTCACAAGAAAACCACCACCAGTTATAATTGACTTAGAAAACATGCCACCATCACGTGGGACCCACCACCGCCGTTCTCACTCAGACACCACCTTCCGTTTCGCAGCAAACTTCGACGATCTCCTCACCTTCGACCCGTCCGACTTCGACATCTCCAACCTCCCTCTTCCATCCCCTGACGCTGTCCCGATGGACTCTGATGAGTCCATCGGGAAGTCAGCGTCAGAGGGACGGCATCTCAGGAGTTTGTCTGTGGATTCAGAGTTTTTTGATGGGTTAGGGTTTGGTGGTGAAGGGGAAAAGGTTGAAGAGAGGAAGGTGAGTAGACATAGGTATAGTAGTTCCATGGATGGGTCTGAGATGGGGTTGTTTGAAGTTGGTGATGGTGTGAAGAAATCTATGCCGGCTGAGAAACTTGCTGAACTTGCTCTTATTGATCCTAAGAGAGCTAAAAGGATTCTTGCTAATAGGCAATCTGCTGCACGATCAAAAGAGAGGAAAACTCGATATACAAGTGAGCTGGAGAGGAAAGTGCAGACGCTTCAAACTGAAGCAACTAACCTCTCTGCACAACTTACAGTCCTTCAGAGAGACACCACTGATTTGACTGCTCAGAATAAGGAGCTCAAAATGAAGTTAGATGCCTTCGAGCAACAAGCAAAGCTTAGAGAAGATCTCAATGAAGCGTTGAAGAAAGAACTTCAACGCCTTAGGGCGCAAAAGAATCATTTGACTGCCGTTGCTGGTAATCCTTCATTTAACGGGATGTTCTCGCAATTTGCTACACAATTAACCATGCAACAGATGAGTAATCCTCAACCCCAGCAGACACAACCTGGCATGCCACCTTCTCGTTCTGATCAACCCTTCAACGGTCGTGGTCGCTCTAACTTCATGGACTTCAATTACCAAAAGTAG

Protein sequence

>Msa1457340

MEPNNFTRKPPPVIIDLENMPPSRGTHHRRSHSDTTFRFAANFDDLLTFDPSDFDISNLPLPSPDAVPMDSDESIGKSASEGRHLRSLSVDSEFFDGLGFGGEGEKVEERKVSRHRYSSSMDGSEMGLFEVGDGVKKSMPAEKLAELALIDPKRAKRILANRQSAARSKERKTRYTSELERKVQTLQTEATNLSAQLTVLQRDTTDLTAQNKELKMKLDAFEQQAKLREDLNEALKKELQRLRAQKNHLTAVAGNPSFNGMFSQFATQLTMQQMSNPQPQQTQPGMPPSRSDQPFNGRGRSNFMDFNYQK*