Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457710 | XP_003590850.2 | 74.028 | 643 | 97 | 4 | 1 | 582 | 1 | 634 | 0.0 | 891 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457710 | sp|Q9LUZ4|C3H66_ARATH | 48.211 | 587 | 257 | 18 | 24 | 578 | 4 | 575 | 1.34e-165 | 488 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457710 | G7I4W5 | 74.028 | 643 | 97 | 4 | 1 | 582 | 1 | 634 | 0.0 | 891 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1457710 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457710 | MtrunA17_Chr1g0187591 | 74.028 | 643 | 97 | 4 | 1 | 582 | 1 | 634 | 0.0 | 891 |
| Msa1457710 | MtrunA17_Chr3g0105131 | 68.293 | 574 | 113 | 7 | 1 | 574 | 1 | 505 | 0.0 | 725 |
| Msa1457710 | MtrunA17_Chr5g0430211 | 53.951 | 658 | 215 | 15 | 1 | 578 | 1 | 650 | 0.0 | 613 |
| Msa1457710 | MtrunA17_Chr3g0105101 | 69.300 | 443 | 74 | 6 | 27 | 469 | 21 | 401 | 0.0 | 574 |
| Msa1457710 | MtrunA17_Chr5g0437251 | 47.360 | 625 | 237 | 15 | 28 | 578 | 25 | 631 | 4.03e-174 | 509 |
| Msa1457710 | MtrunA17_Chr7g0257831 | 41.827 | 624 | 258 | 15 | 33 | 560 | 47 | 661 | 2.91e-139 | 421 |
| Msa1457710 | MtrunA17_Chr3g0113651 | 42.730 | 564 | 208 | 15 | 33 | 578 | 10 | 476 | 7.63e-131 | 392 |
| Msa1457710 | MtrunA17_Chr3g0088521 | 39.070 | 645 | 287 | 17 | 33 | 576 | 45 | 684 | 1.44e-123 | 380 |
| Msa1457710 | MtrunA17_Chr3g0105121 | 55.256 | 371 | 125 | 8 | 220 | 578 | 8 | 349 | 3.72e-115 | 346 |
| Msa1457710 | MtrunA17_Chr1g0171151 | 38.710 | 496 | 245 | 11 | 10 | 458 | 4 | 487 | 4.15e-98 | 311 |
| Msa1457710 | MtrunA17_Chr3g0092171 | 45.251 | 358 | 163 | 5 | 33 | 372 | 83 | 425 | 6.77e-88 | 281 |
| Msa1457710 | MtrunA17_Chr3g0105141 | 66.197 | 142 | 47 | 1 | 187 | 327 | 2 | 143 | 1.41e-65 | 211 |
| Msa1457710 | MtrunA17_Chr3g0105151 | 57.477 | 214 | 72 | 5 | 381 | 582 | 1 | 207 | 5.79e-65 | 212 |
| Msa1457710 | MtrunA17_Chr3g0092221 | 56.742 | 178 | 68 | 4 | 198 | 372 | 137 | 308 | 2.00e-63 | 214 |
| Msa1457710 | MtrunA17_Chr8g0389561 | 52.439 | 164 | 72 | 1 | 217 | 374 | 77 | 240 | 5.01e-53 | 185 |
| Msa1457710 | MtrunA17_Chr6g0487481 | 59.091 | 132 | 45 | 1 | 192 | 323 | 83 | 205 | 3.53e-52 | 183 |
| Msa1457710 | MtrunA17_Chr3g0135351 | 58.955 | 134 | 53 | 2 | 211 | 342 | 43 | 176 | 1.82e-49 | 172 |
| Msa1457710 | MtrunA17_Chr2g0324781 | 59.459 | 111 | 45 | 0 | 221 | 331 | 77 | 187 | 2.63e-46 | 168 |
| Msa1457710 | MtrunA17_Chr4g0040391 | 56.075 | 107 | 47 | 0 | 217 | 323 | 56 | 162 | 7.83e-44 | 159 |
| Msa1457710 | MtrunA17_Chr3g0105111 | 68.493 | 73 | 10 | 1 | 508 | 580 | 1 | 60 | 1.03e-23 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457710 | AT5G58620.1 | 48.211 | 587 | 257 | 18 | 24 | 578 | 4 | 575 | 1.37e-166 | 488 |
| Msa1457710 | AT2G40140.2 | 45.470 | 596 | 257 | 17 | 1 | 578 | 1 | 546 | 1.24e-153 | 454 |
| Msa1457710 | AT2G40140.1 | 45.470 | 596 | 257 | 17 | 1 | 578 | 1 | 546 | 1.24e-153 | 454 |
| Msa1457710 | AT3G55980.1 | 44.370 | 595 | 257 | 17 | 1 | 578 | 1 | 538 | 2.56e-150 | 445 |
| Msa1457710 | AT3G55980.2 | 44.370 | 595 | 257 | 17 | 1 | 578 | 68 | 605 | 1.58e-149 | 445 |
| Msa1457710 | AT5G12850.1 | 41.063 | 621 | 262 | 20 | 25 | 557 | 34 | 638 | 4.29e-132 | 402 |
| Msa1457710 | AT2G41900.1 | 46.970 | 462 | 187 | 10 | 33 | 454 | 48 | 491 | 1.28e-128 | 394 |
| Msa1457710 | AT5G07500.1 | 61.157 | 121 | 47 | 0 | 203 | 323 | 34 | 154 | 3.35e-52 | 179 |
| Msa1457710 | AT4G29190.1 | 48.876 | 178 | 69 | 3 | 210 | 380 | 68 | 230 | 7.66e-52 | 182 |
| Msa1457710 | AT2G25900.2 | 57.364 | 129 | 55 | 0 | 217 | 345 | 86 | 214 | 3.28e-50 | 176 |
| Msa1457710 | AT2G25900.1 | 57.364 | 129 | 55 | 0 | 217 | 345 | 86 | 214 | 3.28e-50 | 176 |
| Msa1457710 | AT2G19810.1 | 61.475 | 122 | 45 | 1 | 206 | 325 | 61 | 182 | 3.80e-50 | 177 |
| Msa1457710 | AT1G03790.1 | 51.592 | 157 | 68 | 3 | 186 | 338 | 51 | 203 | 4.11e-48 | 172 |
| Msa1457710 | AT5G44260.1 | 57.031 | 128 | 50 | 2 | 199 | 325 | 42 | 165 | 2.10e-45 | 165 |
Find 138 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTTCATTGTGCCGTTTC+AGG | 0.147704 | tig0039098:+9366 | Msa1457710:CDS |
| CTTATGGTTGCTGCCTTATT+TGG | 0.182687 | tig0039098:+9264 | Msa1457710:CDS |
| GCCTTCTACCTTCTCTGGTT+GGG | 0.241460 | tig0039098:+10598 | Msa1457710:CDS |
| TTGTCAAACTAGTTTGATTA+AGG | 0.245776 | tig0039098:+9053 | Msa1457710:CDS |
| GCAAAGTGAAGCCTTGTTCT+AGG | 0.263559 | tig0039098:+9706 | Msa1457710:CDS |
| GGTGTGTTGTCTTATATTCT+TGG | 0.275343 | tig0039098:+9294 | Msa1457710:CDS |
| TTGATTAAGGAAAATGAATA+TGG | 0.284568 | tig0039098:+9066 | Msa1457710:CDS |
| CACACCCTTGCTTCCAAATA+AGG | 0.291991 | tig0039098:-9277 | None:intergenic |
| TATATAGTACCGATGAATTT+AGG | 0.298879 | tig0039098:+9673 | Msa1457710:CDS |
| TTCTCGGCATTTGAAGGGTT+GGG | 0.308891 | tig0039098:-10202 | None:intergenic |
| GAACGAAAACCAACAACTTT+GGG | 0.309040 | tig0039098:+10424 | Msa1457710:CDS |
| CTAGGGCTTATTCTCATGAT+TGG | 0.328400 | tig0039098:+9724 | Msa1457710:CDS |
| GAAAGCCATTACATCATCTT+TGG | 0.329332 | tig0039098:-9139 | None:intergenic |
| ACTCCTGCAAGCTTATTTGA+TGG | 0.329612 | tig0039098:-10332 | None:intergenic |
| GTCTACCTTGCCCCGAGTTT+CGG | 0.332508 | tig0039098:+9817 | Msa1457710:CDS |
| TTTGAAGTGGTAAGATTAGA+AGG | 0.343131 | tig0039098:-10452 | None:intergenic |
| CTTGTTGCTGCTCCACCGTT+TGG | 0.345377 | tig0039098:-9578 | None:intergenic |
| ATGGAGCCTTCTACCTTCTC+TGG | 0.362092 | tig0039098:+10593 | Msa1457710:CDS |
| TCTCCATCAAATAAGCTTGC+AGG | 0.370221 | tig0039098:+10329 | Msa1457710:CDS |
| ATCTGTTTCTCGGCATTTGA+AGG | 0.372092 | tig0039098:-10208 | None:intergenic |
| AGCAAAGAAGCAAACCCTTC+TGG | 0.372700 | tig0039098:-9952 | None:intergenic |
| TTCTGCTACCTTAGTTGCCA+TGG | 0.385179 | tig0039098:+10574 | Msa1457710:CDS |
| CTAATAGTATCTTCGGTTCA+AGG | 0.397475 | tig0039098:+9499 | Msa1457710:CDS |
| TGAAGAGAGGACACCTCTTA+TGG | 0.398546 | tig0039098:+9248 | Msa1457710:CDS |
| CTTCCTTGCAAAGCCTTGTT+CGG | 0.403908 | tig0039098:-9917 | None:intergenic |
| TTCACCTAGCGCTTCTTCAA+TGG | 0.404852 | tig0039098:+10049 | Msa1457710:CDS |
| TTGTCTTATATTCTTGGAAC+CGG | 0.405812 | tig0039098:+9300 | Msa1457710:CDS |
| TTTCTCGGCATTTGAAGGGT+TGG | 0.421787 | tig0039098:-10203 | None:intergenic |
| TAATCTTTCTTCTCAGTTCG+AGG | 0.423342 | tig0039098:-9612 | None:intergenic |
| CGAGTGTCCATTTGTTCACC+CGG | 0.428988 | tig0039098:+9749 | Msa1457710:CDS |
| TCGGTTAACATCGACATAAC+CGG | 0.432174 | tig0039098:-9319 | None:intergenic |
| TCGGTTTCTAATAGTATCTT+CGG | 0.438190 | tig0039098:+9492 | Msa1457710:CDS |
| AAGGATAACCCCAAAGTTGT+TGG | 0.439414 | tig0039098:-10433 | None:intergenic |
| AGAACGAAAACCAACAACTT+TGG | 0.439453 | tig0039098:+10423 | Msa1457710:CDS |
| CCCCAACCAGAGAAGGTAGA+AGG | 0.441981 | tig0039098:-10599 | None:intergenic |
| CCTTCTACCTTCTCTGGTTG+GGG | 0.443126 | tig0039098:+10599 | Msa1457710:CDS |
| AGGAAGAGGATACTACTAGA+AGG | 0.443626 | tig0039098:+9519 | Msa1457710:CDS |
| CCATCATTAGCTTACACATA+AGG | 0.444911 | tig0039098:-10286 | None:intergenic |
| TTCAGCCAAAGATGATGTAA+TGG | 0.447315 | tig0039098:+9134 | Msa1457710:CDS |
| CCCTATCTGAGCCGCACACT+CGG | 0.447918 | tig0039098:-9338 | None:intergenic |
| GCAAACCCTTCTGGTGCATC+CGG | 0.454052 | tig0039098:-9943 | None:intergenic |
| CAGTTGATATGAACGGTAAC+CGG | 0.454347 | tig0039098:+9451 | Msa1457710:CDS |
| GCACGACCCTTTCCGAAACT+CGG | 0.454722 | tig0039098:-9829 | None:intergenic |
| AGCCTTCTACCTTCTCTGGT+TGG | 0.455905 | tig0039098:+10597 | Msa1457710:CDS |
| GCAGCATCATCGCATGCAGC+TGG | 0.462576 | tig0039098:+10140 | Msa1457710:CDS |
| TGCTGCCTTATTTGGAAGCA+AGG | 0.473427 | tig0039098:+9272 | Msa1457710:CDS |
| CACGACCCTTTCCGAAACTC+GGG | 0.473623 | tig0039098:-9828 | None:intergenic |
| GAGGATTGGCTCAAAGGAAA+TGG | 0.473772 | tig0039098:+9221 | Msa1457710:CDS |
| TCTGGTTGGGGATCCCCTGA+TGG | 0.473856 | tig0039098:+10611 | Msa1457710:CDS |
| AGAAGGCTCCATGGCAACTA+AGG | 0.474619 | tig0039098:-10582 | None:intergenic |
| ACCGAGTGTGCGGCTCAGAT+AGG | 0.476494 | tig0039098:+9337 | Msa1457710:CDS |
| TATATCCCATTCATTATGTC+AGG | 0.477387 | tig0039098:-9654 | None:intergenic |
| AATAAGGCAGCAACCATAAG+AGG | 0.478339 | tig0039098:-9261 | None:intergenic |
| TCCCTACCTGACATAATGAA+TGG | 0.480887 | tig0039098:+9648 | Msa1457710:CDS |
| CTTACCACTTCAAATATGAA+TGG | 0.481357 | tig0039098:+10461 | Msa1457710:CDS |
| AGCAGCAGAACAACCTGAAA+CGG | 0.481598 | tig0039098:-9379 | None:intergenic |
| TACAACGGTCGAAGCTCCTC+TGG | 0.485266 | tig0039098:-9981 | None:intergenic |
| CCCTACCTGACATAATGAAT+GGG | 0.488450 | tig0039098:+9649 | Msa1457710:CDS |
| AGGCTTTGCAAGGAAGGAAC+CGG | 0.488722 | tig0039098:+9924 | Msa1457710:CDS |
| CGACCGTTGTATGCTTCTAC+CGG | 0.490079 | tig0039098:+9993 | Msa1457710:CDS |
| CAAAGTGAAGCCTTGTTCTA+GGG | 0.493230 | tig0039098:+9707 | Msa1457710:CDS |
| AGCCTTGTTCGGTATTGAGC+AGG | 0.501073 | tig0039098:-9906 | None:intergenic |
| TTATGGTATGGAAGGAGGAT+TGG | 0.501743 | tig0039098:+9207 | Msa1457710:CDS |
| AGGTGAAGGCAAAGCAGAAC+CGG | 0.502979 | tig0039098:-10012 | None:intergenic |
| TTCTGCGCTCAATAAAGCTC+TGG | 0.504121 | tig0039098:-10523 | None:intergenic |
| ATTGAGTTCATCGCCGCAGA+TGG | 0.509619 | tig0039098:-10648 | None:intergenic |
| CCGAGTGTGCGGCTCAGATA+GGG | 0.511710 | tig0039098:+9338 | Msa1457710:CDS |
| CGAACAAGGCTTTGCAAGGA+AGG | 0.512498 | tig0039098:+9918 | Msa1457710:CDS |
| TTGCTTGATGCATCTGCAGA+TGG | 0.513899 | tig0039098:+9423 | Msa1457710:CDS |
| CCTTATGTGTAAGCTAATGA+TGG | 0.517096 | tig0039098:+10286 | Msa1457710:CDS |
| CTTGCCCCGAGTTTCGGAAA+GGG | 0.522774 | tig0039098:+9823 | Msa1457710:CDS |
| GTCATGTGCAACGGTGCCAA+TGG | 0.528443 | tig0039098:+9024 | None:intergenic |
| GTATCTTCGGTTCAAGGAAG+AGG | 0.528667 | tig0039098:+9505 | Msa1457710:CDS |
| CCCATTCATTATGTCAGGTA+GGG | 0.528714 | tig0039098:-9649 | None:intergenic |
| TTCATTATGTCAGGTAGGGA+TGG | 0.535137 | tig0039098:-9645 | None:intergenic |
| CCTTGCCCCGAGTTTCGGAA+AGG | 0.536756 | tig0039098:+9822 | Msa1457710:CDS |
| TCTGTTTCTCGGCATTTGAA+GGG | 0.538648 | tig0039098:-10207 | None:intergenic |
| GCTGCCTTATTTGGAAGCAA+GGG | 0.541989 | tig0039098:+9273 | Msa1457710:CDS |
| GAAGAAATTAGGTTTCCAAA+CGG | 0.542543 | tig0039098:+9563 | Msa1457710:CDS |
| TGGAAGGAGGATTGGCTCAA+AGG | 0.543834 | tig0039098:+9215 | Msa1457710:CDS |
| GGAAGAGGATACTACTAGAA+GGG | 0.548805 | tig0039098:+9520 | Msa1457710:CDS |
| GATGGAGTCAAAGGTGGTGT+CGG | 0.552343 | tig0039098:-10116 | None:intergenic |
| CAGAAGTAGCACTTCAACAA+TGG | 0.554783 | tig0039098:+10706 | Msa1457710:CDS |
| ATGTTGATGAGGTAGGGTTA+TGG | 0.554961 | tig0039098:+9190 | Msa1457710:CDS |
| CGGGTGAACAAATGGACACT+CGG | 0.558339 | tig0039098:-9748 | None:intergenic |
| GTGTAGCGACTTGATTGTCT+CGG | 0.560342 | tig0039098:+9473 | Msa1457710:CDS |
| CCCCTGATGGAAAATTAGAC+TGG | 0.563187 | tig0039098:+10624 | Msa1457710:CDS |
| CCTTTCCGAAACTCGGGGCA+AGG | 0.566549 | tig0039098:-9822 | None:intergenic |
| GGTGAATTTGAATATGATGT+AGG | 0.568172 | tig0039098:-10032 | None:intergenic |
| GATCATGATGTTGATGAGGT+AGG | 0.571630 | tig0039098:+9183 | Msa1457710:CDS |
| ATCATGATGTTGATGAGGTA+GGG | 0.573336 | tig0039098:+9184 | Msa1457710:CDS |
| TTGTTCTGCTGCTTCTGCTG+AGG | 0.573966 | tig0039098:+9389 | Msa1457710:CDS |
| TGTAAACATCCTAAATTCAT+CGG | 0.575359 | tig0039098:-9682 | None:intergenic |
| ATCCTGCTCAATACCGAACA+AGG | 0.577844 | tig0039098:+9904 | Msa1457710:CDS |
| CTTCTTTGCTCACAAACCAG+AGG | 0.579205 | tig0039098:+9965 | Msa1457710:CDS |
| TAGGGTTATGGTATGGAAGG+AGG | 0.579481 | tig0039098:+9202 | Msa1457710:CDS |
| AGGGGATCCCCAACCAGAGA+AGG | 0.582505 | tig0039098:-10606 | None:intergenic |
| TGATCCATTCATATTTGAAG+TGG | 0.582834 | tig0039098:-10465 | None:intergenic |
| GAAATTAGGTTTCCAAACGG+TGG | 0.587095 | tig0039098:+9566 | Msa1457710:CDS |
| TAAGGTAGCAGAAGGAAGCT+CGG | 0.593413 | tig0039098:-10564 | None:intergenic |
| ATACCGAACAAGGCTTTGCA+AGG | 0.594223 | tig0039098:+9914 | Msa1457710:CDS |
| GAAGAGGATACTACTAGAAG+GGG | 0.595681 | tig0039098:+9521 | Msa1457710:CDS |
| GCATGCGATGATGCTGCAGA+TGG | 0.598498 | tig0039098:-10134 | None:intergenic |
| AGGTAGGGTTATGGTATGGA+AGG | 0.598568 | tig0039098:+9199 | Msa1457710:CDS |
| GAGTGTCCATTTGTTCACCC+GGG | 0.599662 | tig0039098:+9750 | Msa1457710:CDS |
| GTCGATGTTAACCGAGTGTG+CGG | 0.601717 | tig0039098:+9327 | Msa1457710:CDS |
| TCCCATTCATTATGTCAGGT+AGG | 0.601794 | tig0039098:-9650 | None:intergenic |
| GCGATGAACTCAATAAAATG+AGG | 0.603206 | tig0039098:+10657 | Msa1457710:CDS |
| AGACAATCAAGTCGCTACAC+CGG | 0.604044 | tig0039098:-9470 | None:intergenic |
| GATGAGGTAGGGTTATGGTA+TGG | 0.604921 | tig0039098:+9195 | Msa1457710:CDS |
| AAGGAACCGGATGCACCAGA+AGG | 0.605474 | tig0039098:+9937 | Msa1457710:CDS |
| GTGGAGCAGCAACAAGATGT+AGG | 0.608133 | tig0039098:+9585 | Msa1457710:CDS |
| AACGAAAACCAACAACTTTG+GGG | 0.608292 | tig0039098:+10425 | Msa1457710:CDS |
| TGATACAACTGCATTGATGT+CGG | 0.609284 | tig0039098:-10401 | None:intergenic |
| AGGAAATGGCATGTGAAGAG+AGG | 0.615831 | tig0039098:+9235 | Msa1457710:CDS |
| ATGGCAACTAAGGTAGCAGA+AGG | 0.616236 | tig0039098:-10572 | None:intergenic |
| GAATCCATTGAAGAAGCGCT+AGG | 0.617474 | tig0039098:-10053 | None:intergenic |
| AGAGAAGGTAGAAGGCTCCA+TGG | 0.618438 | tig0039098:-10591 | None:intergenic |
| TGAGAATAAGCCCTAGAACA+AGG | 0.619488 | tig0039098:-9717 | None:intergenic |
| AGTGTCCATTTGTTCACCCG+GGG | 0.625388 | tig0039098:+9751 | Msa1457710:CDS |
| CTAATGATGGAAGAGAAGAC+AGG | 0.628766 | tig0039098:+10299 | Msa1457710:CDS |
| AAAATCAAAGTCATGTGCAA+CGG | 0.635454 | tig0039098:+9015 | None:intergenic |
| CTGAATCTGAGTCTGCCACA+TGG | 0.636502 | tig0039098:-10165 | None:intergenic |
| TTTGAATATGATGTAGGTGA+AGG | 0.636602 | tig0039098:-10026 | None:intergenic |
| GGTAGTTCAGTTGATATGAA+CGG | 0.639398 | tig0039098:+9444 | Msa1457710:CDS |
| AGGAACCGGATGCACCAGAA+GGG | 0.647933 | tig0039098:+9938 | Msa1457710:CDS |
| TTAATCAAACTAGTTTGACA+AGG | 0.649059 | tig0039098:-9051 | None:intergenic |
| GATGCTGCAGATGGAGTCAA+AGG | 0.650089 | tig0039098:-10125 | None:intergenic |
| AGATGATCATGATGTTGATG+AGG | 0.655942 | tig0039098:+9179 | Msa1457710:CDS |
| AAATTAGACTGGTCCATCTG+CGG | 0.658201 | tig0039098:+10635 | Msa1457710:CDS |
| ACGACCCTTTCCGAAACTCG+GGG | 0.660326 | tig0039098:-9827 | None:intergenic |
| AATGCATCAACTCTAAATTG+TGG | 0.663405 | tig0039098:-10488 | None:intergenic |
| GCTGCAGATGGAGTCAAAGG+TGG | 0.704806 | tig0039098:-10122 | None:intergenic |
| AATGGTTGTTGCATCAAACG+TGG | 0.708040 | tig0039098:+10724 | Msa1457710:CDS |
| GTGTCCATTTGTTCACCCGG+GGG | 0.714093 | tig0039098:+9752 | Msa1457710:CDS |
| CGCATGCAGCTGGAACCATG+TGG | 0.722861 | tig0039098:+10150 | Msa1457710:CDS |
| GATGCTTGTGAATATGCACA+TGG | 0.753418 | tig0039098:+9861 | Msa1457710:CDS |
| GAACCGGTAGAAGCATACAA+CGG | 0.780700 | tig0039098:-9996 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATTAAGGAAAATGAATA+TGG | + | tig0039098:9066-9085 | Msa1457710:CDS | 20.0% |
| !!! | TATTGGCTTAAAAATATATC+AGG | - | tig0039098:10755-10774 | None:intergenic | 20.0% |
| !! | TTGATTAAGGAAAATGAATA+TGG | + | tig0039098:9066-9085 | Msa1457710:CDS | 20.0% |
| !!! | TATTGGCTTAAAAATATATC+AGG | - | tig0039098:10755-10774 | None:intergenic | 20.0% |
| !! | TTAATCAAACTAGTTTGACA+AGG | - | tig0039098:9054-9073 | None:intergenic | 25.0% |
| !! | TTGTCAAACTAGTTTGATTA+AGG | + | tig0039098:9053-9072 | Msa1457710:CDS | 25.0% |
| !!! | TATATAGTACCGATGAATTT+AGG | + | tig0039098:9673-9692 | Msa1457710:CDS | 25.0% |
| ! | TGTAAACATCCTAAATTCAT+CGG | - | tig0039098:9685-9704 | None:intergenic | 25.0% |
| !! | CATGTGTAATGATATTTTCT+CGG | - | tig0039098:9798-9817 | None:intergenic | 25.0% |
| !! | GCAGATTTTATCAAAAAAGA+CGG | - | tig0039098:10095-10114 | None:intergenic | 25.0% |
| !!! | ATTTTCAAGTTCGATACATT+CGG | - | tig0039098:10264-10283 | None:intergenic | 25.0% |
| !!! | AAAGTGTTTTTAAGGTTAGT+AGG | - | tig0039098:10362-10381 | None:intergenic | 25.0% |
| !! | ACTAACCTTAAAAACACTTT+TGG | + | tig0039098:10362-10381 | Msa1457710:CDS | 25.0% |
| !! | CTAACCTTAAAAACACTTTT+GGG | + | tig0039098:10363-10382 | Msa1457710:CDS | 25.0% |
| !! | TTAATCAAACTAGTTTGACA+AGG | - | tig0039098:9054-9073 | None:intergenic | 25.0% |
| !! | TTGTCAAACTAGTTTGATTA+AGG | + | tig0039098:9053-9072 | Msa1457710:CDS | 25.0% |
| !!! | TATATAGTACCGATGAATTT+AGG | + | tig0039098:9673-9692 | Msa1457710:CDS | 25.0% |
| ! | TGTAAACATCCTAAATTCAT+CGG | - | tig0039098:9685-9704 | None:intergenic | 25.0% |
| !! | CATGTGTAATGATATTTTCT+CGG | - | tig0039098:9798-9817 | None:intergenic | 25.0% |
| !! | GCAGATTTTATCAAAAAAGA+CGG | - | tig0039098:10095-10114 | None:intergenic | 25.0% |
| !!! | ATTTTCAAGTTCGATACATT+CGG | - | tig0039098:10264-10283 | None:intergenic | 25.0% |
| !!! | AAAGTGTTTTTAAGGTTAGT+AGG | - | tig0039098:10362-10381 | None:intergenic | 25.0% |
| !! | ACTAACCTTAAAAACACTTT+TGG | + | tig0039098:10362-10381 | Msa1457710:CDS | 25.0% |
| !! | CTAACCTTAAAAACACTTTT+GGG | + | tig0039098:10363-10382 | Msa1457710:CDS | 25.0% |
| TTGTCTTATATTCTTGGAAC+CGG | + | tig0039098:9300-9319 | Msa1457710:CDS | 30.0% | |
| TCGGTTTCTAATAGTATCTT+CGG | + | tig0039098:9492-9511 | Msa1457710:CDS | 30.0% | |
| !! | GACGATTTTCTGAAGAAATT+AGG | + | tig0039098:9552-9571 | Msa1457710:CDS | 30.0% |
| GAAGAAATTAGGTTTCCAAA+CGG | + | tig0039098:9563-9582 | Msa1457710:CDS | 30.0% | |
| TATATCCCATTCATTATGTC+AGG | - | tig0039098:9657-9676 | None:intergenic | 30.0% | |
| !! | CACATGGTATTTTTGAATGT+TGG | + | tig0039098:9877-9896 | Msa1457710:CDS | 30.0% |
| TTTGAATATGATGTAGGTGA+AGG | - | tig0039098:10029-10048 | None:intergenic | 30.0% | |
| GGTGAATTTGAATATGATGT+AGG | - | tig0039098:10035-10054 | None:intergenic | 30.0% | |
| !!! | ATGACCCAAAAGTGTTTTTA+AGG | - | tig0039098:10370-10389 | None:intergenic | 30.0% |
| ! | TTTGAAGTGGTAAGATTAGA+AGG | - | tig0039098:10455-10474 | None:intergenic | 30.0% |
| CTTACCACTTCAAATATGAA+TGG | + | tig0039098:10461-10480 | Msa1457710:CDS | 30.0% | |
| TGATCCATTCATATTTGAAG+TGG | - | tig0039098:10468-10487 | None:intergenic | 30.0% | |
| AATGCATCAACTCTAAATTG+TGG | - | tig0039098:10491-10510 | None:intergenic | 30.0% | |
| TTGTCTTATATTCTTGGAAC+CGG | + | tig0039098:9300-9319 | Msa1457710:CDS | 30.0% | |
| TCGGTTTCTAATAGTATCTT+CGG | + | tig0039098:9492-9511 | Msa1457710:CDS | 30.0% | |
| !! | GACGATTTTCTGAAGAAATT+AGG | + | tig0039098:9552-9571 | Msa1457710:CDS | 30.0% |
| GAAGAAATTAGGTTTCCAAA+CGG | + | tig0039098:9563-9582 | Msa1457710:CDS | 30.0% | |
| TATATCCCATTCATTATGTC+AGG | - | tig0039098:9657-9676 | None:intergenic | 30.0% | |
| !! | CACATGGTATTTTTGAATGT+TGG | + | tig0039098:9877-9896 | Msa1457710:CDS | 30.0% |
| TTTGAATATGATGTAGGTGA+AGG | - | tig0039098:10029-10048 | None:intergenic | 30.0% | |
| GGTGAATTTGAATATGATGT+AGG | - | tig0039098:10035-10054 | None:intergenic | 30.0% | |
| !!! | ATGACCCAAAAGTGTTTTTA+AGG | - | tig0039098:10370-10389 | None:intergenic | 30.0% |
| ! | TTTGAAGTGGTAAGATTAGA+AGG | - | tig0039098:10455-10474 | None:intergenic | 30.0% |
| CTTACCACTTCAAATATGAA+TGG | + | tig0039098:10461-10480 | Msa1457710:CDS | 30.0% | |
| TGATCCATTCATATTTGAAG+TGG | - | tig0039098:10468-10487 | None:intergenic | 30.0% | |
| AATGCATCAACTCTAAATTG+TGG | - | tig0039098:10491-10510 | None:intergenic | 30.0% | |
| ! | AGTTTGACAAGGTTTTCCAT+TGG | - | tig0039098:9043-9062 | None:intergenic | 35.0% |
| TTCAGCCAAAGATGATGTAA+TGG | + | tig0039098:9134-9153 | Msa1457710:CDS | 35.0% | |
| GAAAGCCATTACATCATCTT+TGG | - | tig0039098:9142-9161 | None:intergenic | 35.0% | |
| AGATGATCATGATGTTGATG+AGG | + | tig0039098:9179-9198 | Msa1457710:CDS | 35.0% | |
| ! | ATCATGATGTTGATGAGGTA+GGG | + | tig0039098:9184-9203 | Msa1457710:CDS | 35.0% |
| GGTGTGTTGTCTTATATTCT+TGG | + | tig0039098:9294-9313 | Msa1457710:CDS | 35.0% | |
| ! | GGTAGTTCAGTTGATATGAA+CGG | + | tig0039098:9444-9463 | Msa1457710:CDS | 35.0% |
| CTAATAGTATCTTCGGTTCA+AGG | + | tig0039098:9499-9518 | Msa1457710:CDS | 35.0% | |
| TAATCTTTCTTCTCAGTTCG+AGG | - | tig0039098:9615-9634 | None:intergenic | 35.0% | |
| !! | GCAGTTTTCAATCTGTTTCT+CGG | - | tig0039098:10221-10240 | None:intergenic | 35.0% |
| ! | CCATCATTAGCTTACACATA+AGG | - | tig0039098:10289-10308 | None:intergenic | 35.0% |
| CCTTATGTGTAAGCTAATGA+TGG | + | tig0039098:10286-10305 | Msa1457710:CDS | 35.0% | |
| ! | TGATACAACTGCATTGATGT+CGG | - | tig0039098:10404-10423 | None:intergenic | 35.0% |
| AGAACGAAAACCAACAACTT+TGG | + | tig0039098:10423-10442 | Msa1457710:CDS | 35.0% | |
| GAACGAAAACCAACAACTTT+GGG | + | tig0039098:10424-10443 | Msa1457710:CDS | 35.0% | |
| AACGAAAACCAACAACTTTG+GGG | + | tig0039098:10425-10444 | Msa1457710:CDS | 35.0% | |
| ! | ACCAGTCTAATTTTCCATCA+GGG | - | tig0039098:10628-10647 | None:intergenic | 35.0% |
| GCGATGAACTCAATAAAATG+AGG | + | tig0039098:10657-10676 | Msa1457710:CDS | 35.0% | |
| ! | AGTTTGACAAGGTTTTCCAT+TGG | - | tig0039098:9043-9062 | None:intergenic | 35.0% |
| TTCAGCCAAAGATGATGTAA+TGG | + | tig0039098:9134-9153 | Msa1457710:CDS | 35.0% | |
| GAAAGCCATTACATCATCTT+TGG | - | tig0039098:9142-9161 | None:intergenic | 35.0% | |
| AGATGATCATGATGTTGATG+AGG | + | tig0039098:9179-9198 | Msa1457710:CDS | 35.0% | |
| ! | ATCATGATGTTGATGAGGTA+GGG | + | tig0039098:9184-9203 | Msa1457710:CDS | 35.0% |
| GGTGTGTTGTCTTATATTCT+TGG | + | tig0039098:9294-9313 | Msa1457710:CDS | 35.0% | |
| ! | GGTAGTTCAGTTGATATGAA+CGG | + | tig0039098:9444-9463 | Msa1457710:CDS | 35.0% |
| CTAATAGTATCTTCGGTTCA+AGG | + | tig0039098:9499-9518 | Msa1457710:CDS | 35.0% | |
| TAATCTTTCTTCTCAGTTCG+AGG | - | tig0039098:9615-9634 | None:intergenic | 35.0% | |
| !! | GCAGTTTTCAATCTGTTTCT+CGG | - | tig0039098:10221-10240 | None:intergenic | 35.0% |
| ! | CCATCATTAGCTTACACATA+AGG | - | tig0039098:10289-10308 | None:intergenic | 35.0% |
| CCTTATGTGTAAGCTAATGA+TGG | + | tig0039098:10286-10305 | Msa1457710:CDS | 35.0% | |
| ! | TGATACAACTGCATTGATGT+CGG | - | tig0039098:10404-10423 | None:intergenic | 35.0% |
| AGAACGAAAACCAACAACTT+TGG | + | tig0039098:10423-10442 | Msa1457710:CDS | 35.0% | |
| GAACGAAAACCAACAACTTT+GGG | + | tig0039098:10424-10443 | Msa1457710:CDS | 35.0% | |
| AACGAAAACCAACAACTTTG+GGG | + | tig0039098:10425-10444 | Msa1457710:CDS | 35.0% | |
| ! | ACCAGTCTAATTTTCCATCA+GGG | - | tig0039098:10628-10647 | None:intergenic | 35.0% |
| GCGATGAACTCAATAAAATG+AGG | + | tig0039098:10657-10676 | Msa1457710:CDS | 35.0% | |
| ! | GATCATGATGTTGATGAGGT+AGG | + | tig0039098:9183-9202 | Msa1457710:CDS | 40.0% |
| ! | ATGTTGATGAGGTAGGGTTA+TGG | + | tig0039098:9190-9209 | Msa1457710:CDS | 40.0% |
| TTATGGTATGGAAGGAGGAT+TGG | + | tig0039098:9207-9226 | Msa1457710:CDS | 40.0% | |
| AATAAGGCAGCAACCATAAG+AGG | - | tig0039098:9264-9283 | None:intergenic | 40.0% | |
| ! | CTTATGGTTGCTGCCTTATT+TGG | + | tig0039098:9264-9283 | Msa1457710:CDS | 40.0% |
| TCGGTTAACATCGACATAAC+CGG | - | tig0039098:9322-9341 | None:intergenic | 40.0% | |
| ! | CAGTTGATATGAACGGTAAC+CGG | + | tig0039098:9451-9470 | Msa1457710:CDS | 40.0% |
| AGGAAGAGGATACTACTAGA+AGG | + | tig0039098:9519-9538 | Msa1457710:CDS | 40.0% | |
| GGAAGAGGATACTACTAGAA+GGG | + | tig0039098:9520-9539 | Msa1457710:CDS | 40.0% | |
| GAAGAGGATACTACTAGAAG+GGG | + | tig0039098:9521-9540 | Msa1457710:CDS | 40.0% | |
| GAAATTAGGTTTCCAAACGG+TGG | + | tig0039098:9566-9585 | Msa1457710:CDS | 40.0% | |
| TTCATTATGTCAGGTAGGGA+TGG | - | tig0039098:9648-9667 | None:intergenic | 40.0% | |
| TCCCTACCTGACATAATGAA+TGG | + | tig0039098:9648-9667 | Msa1457710:CDS | 40.0% | |
| CCCATTCATTATGTCAGGTA+GGG | - | tig0039098:9652-9671 | None:intergenic | 40.0% | |
| CCCTACCTGACATAATGAAT+GGG | + | tig0039098:9649-9668 | Msa1457710:CDS | 40.0% | |
| TCCCATTCATTATGTCAGGT+AGG | - | tig0039098:9653-9672 | None:intergenic | 40.0% | |
| !! | CAAAGTGAAGCCTTGTTCTA+GGG | + | tig0039098:9707-9726 | Msa1457710:CDS | 40.0% |
| TGAGAATAAGCCCTAGAACA+AGG | - | tig0039098:9720-9739 | None:intergenic | 40.0% | |
| CTAGGGCTTATTCTCATGAT+TGG | + | tig0039098:9724-9743 | Msa1457710:CDS | 40.0% | |
| GATGCTTGTGAATATGCACA+TGG | + | tig0039098:9861-9880 | Msa1457710:CDS | 40.0% | |
| ! | TCTGTTTCTCGGCATTTGAA+GGG | - | tig0039098:10210-10229 | None:intergenic | 40.0% |
| ! | ATCTGTTTCTCGGCATTTGA+AGG | - | tig0039098:10211-10230 | None:intergenic | 40.0% |
| ! | CTAATGATGGAAGAGAAGAC+AGG | + | tig0039098:10299-10318 | Msa1457710:CDS | 40.0% |
| TCTCCATCAAATAAGCTTGC+AGG | + | tig0039098:10329-10348 | Msa1457710:CDS | 40.0% | |
| ACTCCTGCAAGCTTATTTGA+TGG | - | tig0039098:10335-10354 | None:intergenic | 40.0% | |
| AAGGATAACCCCAAAGTTGT+TGG | - | tig0039098:10436-10455 | None:intergenic | 40.0% | |
| ! | CCAGTCTAATTTTCCATCAG+GGG | - | tig0039098:10627-10646 | None:intergenic | 40.0% |
| ! | GACCAGTCTAATTTTCCATC+AGG | - | tig0039098:10629-10648 | None:intergenic | 40.0% |
| ! | AAATTAGACTGGTCCATCTG+CGG | + | tig0039098:10635-10654 | Msa1457710:CDS | 40.0% |
| CAGAAGTAGCACTTCAACAA+TGG | + | tig0039098:10706-10725 | Msa1457710:CDS | 40.0% | |
| AATGGTTGTTGCATCAAACG+TGG | + | tig0039098:10724-10743 | Msa1457710:CDS | 40.0% | |
| ! | GATCATGATGTTGATGAGGT+AGG | + | tig0039098:9183-9202 | Msa1457710:CDS | 40.0% |
| ! | ATGTTGATGAGGTAGGGTTA+TGG | + | tig0039098:9190-9209 | Msa1457710:CDS | 40.0% |
| TTATGGTATGGAAGGAGGAT+TGG | + | tig0039098:9207-9226 | Msa1457710:CDS | 40.0% | |
| AATAAGGCAGCAACCATAAG+AGG | - | tig0039098:9264-9283 | None:intergenic | 40.0% | |
| ! | CTTATGGTTGCTGCCTTATT+TGG | + | tig0039098:9264-9283 | Msa1457710:CDS | 40.0% |
| TCGGTTAACATCGACATAAC+CGG | - | tig0039098:9322-9341 | None:intergenic | 40.0% | |
| ! | CAGTTGATATGAACGGTAAC+CGG | + | tig0039098:9451-9470 | Msa1457710:CDS | 40.0% |
| AGGAAGAGGATACTACTAGA+AGG | + | tig0039098:9519-9538 | Msa1457710:CDS | 40.0% | |
| GGAAGAGGATACTACTAGAA+GGG | + | tig0039098:9520-9539 | Msa1457710:CDS | 40.0% | |
| GAAGAGGATACTACTAGAAG+GGG | + | tig0039098:9521-9540 | Msa1457710:CDS | 40.0% | |
| GAAATTAGGTTTCCAAACGG+TGG | + | tig0039098:9566-9585 | Msa1457710:CDS | 40.0% | |
| TTCATTATGTCAGGTAGGGA+TGG | - | tig0039098:9648-9667 | None:intergenic | 40.0% | |
| TCCCTACCTGACATAATGAA+TGG | + | tig0039098:9648-9667 | Msa1457710:CDS | 40.0% | |
| CCCATTCATTATGTCAGGTA+GGG | - | tig0039098:9652-9671 | None:intergenic | 40.0% | |
| CCCTACCTGACATAATGAAT+GGG | + | tig0039098:9649-9668 | Msa1457710:CDS | 40.0% | |
| TCCCATTCATTATGTCAGGT+AGG | - | tig0039098:9653-9672 | None:intergenic | 40.0% | |
| !! | CAAAGTGAAGCCTTGTTCTA+GGG | + | tig0039098:9707-9726 | Msa1457710:CDS | 40.0% |
| TGAGAATAAGCCCTAGAACA+AGG | - | tig0039098:9720-9739 | None:intergenic | 40.0% | |
| CTAGGGCTTATTCTCATGAT+TGG | + | tig0039098:9724-9743 | Msa1457710:CDS | 40.0% | |
| GATGCTTGTGAATATGCACA+TGG | + | tig0039098:9861-9880 | Msa1457710:CDS | 40.0% | |
| ! | TCTGTTTCTCGGCATTTGAA+GGG | - | tig0039098:10210-10229 | None:intergenic | 40.0% |
| ! | ATCTGTTTCTCGGCATTTGA+AGG | - | tig0039098:10211-10230 | None:intergenic | 40.0% |
| ! | CTAATGATGGAAGAGAAGAC+AGG | + | tig0039098:10299-10318 | Msa1457710:CDS | 40.0% |
| TCTCCATCAAATAAGCTTGC+AGG | + | tig0039098:10329-10348 | Msa1457710:CDS | 40.0% | |
| ACTCCTGCAAGCTTATTTGA+TGG | - | tig0039098:10335-10354 | None:intergenic | 40.0% | |
| AAGGATAACCCCAAAGTTGT+TGG | - | tig0039098:10436-10455 | None:intergenic | 40.0% | |
| ! | CCAGTCTAATTTTCCATCAG+GGG | - | tig0039098:10627-10646 | None:intergenic | 40.0% |
| ! | GACCAGTCTAATTTTCCATC+AGG | - | tig0039098:10629-10648 | None:intergenic | 40.0% |
| ! | AAATTAGACTGGTCCATCTG+CGG | + | tig0039098:10635-10654 | Msa1457710:CDS | 40.0% |
| CAGAAGTAGCACTTCAACAA+TGG | + | tig0039098:10706-10725 | Msa1457710:CDS | 40.0% | |
| AATGGTTGTTGCATCAAACG+TGG | + | tig0039098:10724-10743 | Msa1457710:CDS | 40.0% | |
| GATGAGGTAGGGTTATGGTA+TGG | + | tig0039098:9195-9214 | Msa1457710:CDS | 45.0% | |
| AGGTAGGGTTATGGTATGGA+AGG | + | tig0039098:9199-9218 | Msa1457710:CDS | 45.0% | |
| TAGGGTTATGGTATGGAAGG+AGG | + | tig0039098:9202-9221 | Msa1457710:CDS | 45.0% | |
| !! | GAGGATTGGCTCAAAGGAAA+TGG | + | tig0039098:9221-9240 | Msa1457710:CDS | 45.0% |
| AGGAAATGGCATGTGAAGAG+AGG | + | tig0039098:9235-9254 | Msa1457710:CDS | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | + | tig0039098:9248-9267 | Msa1457710:CDS | 45.0% | |
| !! | TGCTGCCTTATTTGGAAGCA+AGG | + | tig0039098:9272-9291 | Msa1457710:CDS | 45.0% |
| !! | GCTGCCTTATTTGGAAGCAA+GGG | + | tig0039098:9273-9292 | Msa1457710:CDS | 45.0% |
| CACACCCTTGCTTCCAAATA+AGG | - | tig0039098:9280-9299 | None:intergenic | 45.0% | |
| AGCAGCAGAACAACCTGAAA+CGG | - | tig0039098:9382-9401 | None:intergenic | 45.0% | |
| TTGCTTGATGCATCTGCAGA+TGG | + | tig0039098:9423-9442 | Msa1457710:CDS | 45.0% | |
| AGACAATCAAGTCGCTACAC+CGG | - | tig0039098:9473-9492 | None:intergenic | 45.0% | |
| GTGTAGCGACTTGATTGTCT+CGG | + | tig0039098:9473-9492 | Msa1457710:CDS | 45.0% | |
| GTATCTTCGGTTCAAGGAAG+AGG | + | tig0039098:9505-9524 | Msa1457710:CDS | 45.0% | |
| !! | GCAAAGTGAAGCCTTGTTCT+AGG | + | tig0039098:9706-9725 | Msa1457710:CDS | 45.0% |
| ATCCTGCTCAATACCGAACA+AGG | + | tig0039098:9904-9923 | Msa1457710:CDS | 45.0% | |
| ATACCGAACAAGGCTTTGCA+AGG | + | tig0039098:9914-9933 | Msa1457710:CDS | 45.0% | |
| !! | CTTCCTTGCAAAGCCTTGTT+CGG | - | tig0039098:9920-9939 | None:intergenic | 45.0% |
| AGCAAAGAAGCAAACCCTTC+TGG | - | tig0039098:9955-9974 | None:intergenic | 45.0% | |
| CTTCTTTGCTCACAAACCAG+AGG | + | tig0039098:9965-9984 | Msa1457710:CDS | 45.0% | |
| ! | GAACCGGTAGAAGCATACAA+CGG | - | tig0039098:9999-10018 | None:intergenic | 45.0% |
| TTCACCTAGCGCTTCTTCAA+TGG | + | tig0039098:10049-10068 | Msa1457710:CDS | 45.0% | |
| !! | GAATCCATTGAAGAAGCGCT+AGG | - | tig0039098:10056-10075 | None:intergenic | 45.0% |
| TTCTCGGCATTTGAAGGGTT+GGG | - | tig0039098:10205-10224 | None:intergenic | 45.0% | |
| TTTCTCGGCATTTGAAGGGT+TGG | - | tig0039098:10206-10225 | None:intergenic | 45.0% | |
| TTCTGCGCTCAATAAAGCTC+TGG | - | tig0039098:10526-10545 | None:intergenic | 45.0% | |
| TAAGGTAGCAGAAGGAAGCT+CGG | - | tig0039098:10567-10586 | None:intergenic | 45.0% | |
| ATGGCAACTAAGGTAGCAGA+AGG | - | tig0039098:10575-10594 | None:intergenic | 45.0% | |
| TTCTGCTACCTTAGTTGCCA+TGG | + | tig0039098:10574-10593 | Msa1457710:CDS | 45.0% | |
| CCCCTGATGGAAAATTAGAC+TGG | + | tig0039098:10624-10643 | Msa1457710:CDS | 45.0% | |
| GATGAGGTAGGGTTATGGTA+TGG | + | tig0039098:9195-9214 | Msa1457710:CDS | 45.0% | |
| AGGTAGGGTTATGGTATGGA+AGG | + | tig0039098:9199-9218 | Msa1457710:CDS | 45.0% | |
| TAGGGTTATGGTATGGAAGG+AGG | + | tig0039098:9202-9221 | Msa1457710:CDS | 45.0% | |
| !! | GAGGATTGGCTCAAAGGAAA+TGG | + | tig0039098:9221-9240 | Msa1457710:CDS | 45.0% |
| AGGAAATGGCATGTGAAGAG+AGG | + | tig0039098:9235-9254 | Msa1457710:CDS | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | + | tig0039098:9248-9267 | Msa1457710:CDS | 45.0% | |
| !! | TGCTGCCTTATTTGGAAGCA+AGG | + | tig0039098:9272-9291 | Msa1457710:CDS | 45.0% |
| !! | GCTGCCTTATTTGGAAGCAA+GGG | + | tig0039098:9273-9292 | Msa1457710:CDS | 45.0% |
| CACACCCTTGCTTCCAAATA+AGG | - | tig0039098:9280-9299 | None:intergenic | 45.0% | |
| AGCAGCAGAACAACCTGAAA+CGG | - | tig0039098:9382-9401 | None:intergenic | 45.0% | |
| TTGCTTGATGCATCTGCAGA+TGG | + | tig0039098:9423-9442 | Msa1457710:CDS | 45.0% | |
| AGACAATCAAGTCGCTACAC+CGG | - | tig0039098:9473-9492 | None:intergenic | 45.0% | |
| GTGTAGCGACTTGATTGTCT+CGG | + | tig0039098:9473-9492 | Msa1457710:CDS | 45.0% | |
| GTATCTTCGGTTCAAGGAAG+AGG | + | tig0039098:9505-9524 | Msa1457710:CDS | 45.0% | |
| !! | GCAAAGTGAAGCCTTGTTCT+AGG | + | tig0039098:9706-9725 | Msa1457710:CDS | 45.0% |
| ATCCTGCTCAATACCGAACA+AGG | + | tig0039098:9904-9923 | Msa1457710:CDS | 45.0% | |
| ATACCGAACAAGGCTTTGCA+AGG | + | tig0039098:9914-9933 | Msa1457710:CDS | 45.0% | |
| !! | CTTCCTTGCAAAGCCTTGTT+CGG | - | tig0039098:9920-9939 | None:intergenic | 45.0% |
| AGCAAAGAAGCAAACCCTTC+TGG | - | tig0039098:9955-9974 | None:intergenic | 45.0% | |
| CTTCTTTGCTCACAAACCAG+AGG | + | tig0039098:9965-9984 | Msa1457710:CDS | 45.0% | |
| ! | GAACCGGTAGAAGCATACAA+CGG | - | tig0039098:9999-10018 | None:intergenic | 45.0% |
| TTCACCTAGCGCTTCTTCAA+TGG | + | tig0039098:10049-10068 | Msa1457710:CDS | 45.0% | |
| !! | GAATCCATTGAAGAAGCGCT+AGG | - | tig0039098:10056-10075 | None:intergenic | 45.0% |
| TTCTCGGCATTTGAAGGGTT+GGG | - | tig0039098:10205-10224 | None:intergenic | 45.0% | |
| TTTCTCGGCATTTGAAGGGT+TGG | - | tig0039098:10206-10225 | None:intergenic | 45.0% | |
| TTCTGCGCTCAATAAAGCTC+TGG | - | tig0039098:10526-10545 | None:intergenic | 45.0% | |
| TAAGGTAGCAGAAGGAAGCT+CGG | - | tig0039098:10567-10586 | None:intergenic | 45.0% | |
| ATGGCAACTAAGGTAGCAGA+AGG | - | tig0039098:10575-10594 | None:intergenic | 45.0% | |
| TTCTGCTACCTTAGTTGCCA+TGG | + | tig0039098:10574-10593 | Msa1457710:CDS | 45.0% | |
| CCCCTGATGGAAAATTAGAC+TGG | + | tig0039098:10624-10643 | Msa1457710:CDS | 45.0% | |
| !! | TGGAAGGAGGATTGGCTCAA+AGG | + | tig0039098:9215-9234 | Msa1457710:CDS | 50.0% |
| GTCGATGTTAACCGAGTGTG+CGG | + | tig0039098:9327-9346 | Msa1457710:CDS | 50.0% | |
| !! | GCTCTTCATTGTGCCGTTTC+AGG | + | tig0039098:9366-9385 | Msa1457710:CDS | 50.0% |
| ! | TTGTTCTGCTGCTTCTGCTG+AGG | + | tig0039098:9389-9408 | Msa1457710:CDS | 50.0% |
| GTGGAGCAGCAACAAGATGT+AGG | + | tig0039098:9585-9604 | Msa1457710:CDS | 50.0% | |
| CGGGTGAACAAATGGACACT+CGG | - | tig0039098:9751-9770 | None:intergenic | 50.0% | |
| CGAGTGTCCATTTGTTCACC+CGG | + | tig0039098:9749-9768 | Msa1457710:CDS | 50.0% | |
| GAGTGTCCATTTGTTCACCC+GGG | + | tig0039098:9750-9769 | Msa1457710:CDS | 50.0% | |
| AGTGTCCATTTGTTCACCCG+GGG | + | tig0039098:9751-9770 | Msa1457710:CDS | 50.0% | |
| ! | TTTTCCCCCGGGTGAACAAA+TGG | - | tig0039098:9759-9778 | None:intergenic | 50.0% |
| !! | AGCCTTGTTCGGTATTGAGC+AGG | - | tig0039098:9909-9928 | None:intergenic | 50.0% |
| CGAACAAGGCTTTGCAAGGA+AGG | + | tig0039098:9918-9937 | Msa1457710:CDS | 50.0% | |
| AGGCTTTGCAAGGAAGGAAC+CGG | + | tig0039098:9924-9943 | Msa1457710:CDS | 50.0% | |
| CGACCGTTGTATGCTTCTAC+CGG | + | tig0039098:9993-10012 | Msa1457710:CDS | 50.0% | |
| AGGTGAAGGCAAAGCAGAAC+CGG | - | tig0039098:10015-10034 | None:intergenic | 50.0% | |
| GATGGAGTCAAAGGTGGTGT+CGG | - | tig0039098:10119-10138 | None:intergenic | 50.0% | |
| GATGCTGCAGATGGAGTCAA+AGG | - | tig0039098:10128-10147 | None:intergenic | 50.0% | |
| CTGAATCTGAGTCTGCCACA+TGG | - | tig0039098:10168-10187 | None:intergenic | 50.0% | |
| AGAAGGCTCCATGGCAACTA+AGG | - | tig0039098:10585-10604 | None:intergenic | 50.0% | |
| AGAGAAGGTAGAAGGCTCCA+TGG | - | tig0039098:10594-10613 | None:intergenic | 50.0% | |
| ATGGAGCCTTCTACCTTCTC+TGG | + | tig0039098:10593-10612 | Msa1457710:CDS | 50.0% | |
| AGCCTTCTACCTTCTCTGGT+TGG | + | tig0039098:10597-10616 | Msa1457710:CDS | 50.0% | |
| GCCTTCTACCTTCTCTGGTT+GGG | + | tig0039098:10598-10617 | Msa1457710:CDS | 50.0% | |
| CCTTCTACCTTCTCTGGTTG+GGG | + | tig0039098:10599-10618 | Msa1457710:CDS | 50.0% | |
| ATTGAGTTCATCGCCGCAGA+TGG | - | tig0039098:10651-10670 | None:intergenic | 50.0% | |
| !! | TGGAAGGAGGATTGGCTCAA+AGG | + | tig0039098:9215-9234 | Msa1457710:CDS | 50.0% |
| GTCGATGTTAACCGAGTGTG+CGG | + | tig0039098:9327-9346 | Msa1457710:CDS | 50.0% | |
| !! | GCTCTTCATTGTGCCGTTTC+AGG | + | tig0039098:9366-9385 | Msa1457710:CDS | 50.0% |
| ! | TTGTTCTGCTGCTTCTGCTG+AGG | + | tig0039098:9389-9408 | Msa1457710:CDS | 50.0% |
| GTGGAGCAGCAACAAGATGT+AGG | + | tig0039098:9585-9604 | Msa1457710:CDS | 50.0% | |
| CGGGTGAACAAATGGACACT+CGG | - | tig0039098:9751-9770 | None:intergenic | 50.0% | |
| CGAGTGTCCATTTGTTCACC+CGG | + | tig0039098:9749-9768 | Msa1457710:CDS | 50.0% | |
| GAGTGTCCATTTGTTCACCC+GGG | + | tig0039098:9750-9769 | Msa1457710:CDS | 50.0% | |
| AGTGTCCATTTGTTCACCCG+GGG | + | tig0039098:9751-9770 | Msa1457710:CDS | 50.0% | |
| ! | TTTTCCCCCGGGTGAACAAA+TGG | - | tig0039098:9759-9778 | None:intergenic | 50.0% |
| !! | AGCCTTGTTCGGTATTGAGC+AGG | - | tig0039098:9909-9928 | None:intergenic | 50.0% |
| CGAACAAGGCTTTGCAAGGA+AGG | + | tig0039098:9918-9937 | Msa1457710:CDS | 50.0% | |
| AGGCTTTGCAAGGAAGGAAC+CGG | + | tig0039098:9924-9943 | Msa1457710:CDS | 50.0% | |
| CGACCGTTGTATGCTTCTAC+CGG | + | tig0039098:9993-10012 | Msa1457710:CDS | 50.0% | |
| AGGTGAAGGCAAAGCAGAAC+CGG | - | tig0039098:10015-10034 | None:intergenic | 50.0% | |
| GATGGAGTCAAAGGTGGTGT+CGG | - | tig0039098:10119-10138 | None:intergenic | 50.0% | |
| GATGCTGCAGATGGAGTCAA+AGG | - | tig0039098:10128-10147 | None:intergenic | 50.0% | |
| CTGAATCTGAGTCTGCCACA+TGG | - | tig0039098:10168-10187 | None:intergenic | 50.0% | |
| AGAAGGCTCCATGGCAACTA+AGG | - | tig0039098:10585-10604 | None:intergenic | 50.0% | |
| AGAGAAGGTAGAAGGCTCCA+TGG | - | tig0039098:10594-10613 | None:intergenic | 50.0% | |
| ATGGAGCCTTCTACCTTCTC+TGG | + | tig0039098:10593-10612 | Msa1457710:CDS | 50.0% | |
| AGCCTTCTACCTTCTCTGGT+TGG | + | tig0039098:10597-10616 | Msa1457710:CDS | 50.0% | |
| GCCTTCTACCTTCTCTGGTT+GGG | + | tig0039098:10598-10617 | Msa1457710:CDS | 50.0% | |
| CCTTCTACCTTCTCTGGTTG+GGG | + | tig0039098:10599-10618 | Msa1457710:CDS | 50.0% | |
| ATTGAGTTCATCGCCGCAGA+TGG | - | tig0039098:10651-10670 | None:intergenic | 50.0% | |
| CTTGTTGCTGCTCCACCGTT+TGG | - | tig0039098:9581-9600 | None:intergenic | 55.0% | |
| GTGTCCATTTGTTCACCCGG+GGG | + | tig0039098:9752-9771 | Msa1457710:CDS | 55.0% | |
| GTCTACCTTGCCCCGAGTTT+CGG | + | tig0039098:9817-9836 | Msa1457710:CDS | 55.0% | |
| CTTGCCCCGAGTTTCGGAAA+GGG | + | tig0039098:9823-9842 | Msa1457710:CDS | 55.0% | |
| ACGACCCTTTCCGAAACTCG+GGG | - | tig0039098:9830-9849 | None:intergenic | 55.0% | |
| CACGACCCTTTCCGAAACTC+GGG | - | tig0039098:9831-9850 | None:intergenic | 55.0% | |
| GCACGACCCTTTCCGAAACT+CGG | - | tig0039098:9832-9851 | None:intergenic | 55.0% | |
| AAGGAACCGGATGCACCAGA+AGG | + | tig0039098:9937-9956 | Msa1457710:CDS | 55.0% | |
| AGGAACCGGATGCACCAGAA+GGG | + | tig0039098:9938-9957 | Msa1457710:CDS | 55.0% | |
| GCAAACCCTTCTGGTGCATC+CGG | - | tig0039098:9946-9965 | None:intergenic | 55.0% | |
| TACAACGGTCGAAGCTCCTC+TGG | - | tig0039098:9984-10003 | None:intergenic | 55.0% | |
| GCTGCAGATGGAGTCAAAGG+TGG | - | tig0039098:10125-10144 | None:intergenic | 55.0% | |
| GCATGCGATGATGCTGCAGA+TGG | - | tig0039098:10137-10156 | None:intergenic | 55.0% | |
| CCCCAACCAGAGAAGGTAGA+AGG | - | tig0039098:10602-10621 | None:intergenic | 55.0% | |
| CTTGTTGCTGCTCCACCGTT+TGG | - | tig0039098:9581-9600 | None:intergenic | 55.0% | |
| GTGTCCATTTGTTCACCCGG+GGG | + | tig0039098:9752-9771 | Msa1457710:CDS | 55.0% | |
| GTCTACCTTGCCCCGAGTTT+CGG | + | tig0039098:9817-9836 | Msa1457710:CDS | 55.0% | |
| CTTGCCCCGAGTTTCGGAAA+GGG | + | tig0039098:9823-9842 | Msa1457710:CDS | 55.0% | |
| ACGACCCTTTCCGAAACTCG+GGG | - | tig0039098:9830-9849 | None:intergenic | 55.0% | |
| CACGACCCTTTCCGAAACTC+GGG | - | tig0039098:9831-9850 | None:intergenic | 55.0% | |
| GCACGACCCTTTCCGAAACT+CGG | - | tig0039098:9832-9851 | None:intergenic | 55.0% | |
| AAGGAACCGGATGCACCAGA+AGG | + | tig0039098:9937-9956 | Msa1457710:CDS | 55.0% | |
| AGGAACCGGATGCACCAGAA+GGG | + | tig0039098:9938-9957 | Msa1457710:CDS | 55.0% | |
| GCAAACCCTTCTGGTGCATC+CGG | - | tig0039098:9946-9965 | None:intergenic | 55.0% | |
| TACAACGGTCGAAGCTCCTC+TGG | - | tig0039098:9984-10003 | None:intergenic | 55.0% | |
| GCTGCAGATGGAGTCAAAGG+TGG | - | tig0039098:10125-10144 | None:intergenic | 55.0% | |
| GCATGCGATGATGCTGCAGA+TGG | - | tig0039098:10137-10156 | None:intergenic | 55.0% | |
| CCCCAACCAGAGAAGGTAGA+AGG | - | tig0039098:10602-10621 | None:intergenic | 55.0% | |
| ACCGAGTGTGCGGCTCAGAT+AGG | + | tig0039098:9337-9356 | Msa1457710:CDS | 60.0% | |
| CCCTATCTGAGCCGCACACT+CGG | - | tig0039098:9341-9360 | None:intergenic | 60.0% | |
| CCGAGTGTGCGGCTCAGATA+GGG | + | tig0039098:9338-9357 | Msa1457710:CDS | 60.0% | |
| ! | GACGACTTGCGTTTTCCCCC+GGG | - | tig0039098:9770-9789 | None:intergenic | 60.0% |
| ! | CGACGACTTGCGTTTTCCCC+CGG | - | tig0039098:9771-9790 | None:intergenic | 60.0% |
| CCTTTCCGAAACTCGGGGCA+AGG | - | tig0039098:9825-9844 | None:intergenic | 60.0% | |
| CCTTGCCCCGAGTTTCGGAA+AGG | + | tig0039098:9822-9841 | Msa1457710:CDS | 60.0% | |
| GCAGCATCATCGCATGCAGC+TGG | + | tig0039098:10140-10159 | Msa1457710:CDS | 60.0% | |
| CGCATGCAGCTGGAACCATG+TGG | + | tig0039098:10150-10169 | Msa1457710:CDS | 60.0% | |
| AGGGGATCCCCAACCAGAGA+AGG | - | tig0039098:10609-10628 | None:intergenic | 60.0% | |
| TCTGGTTGGGGATCCCCTGA+TGG | + | tig0039098:10611-10630 | Msa1457710:CDS | 60.0% | |
| ACCGAGTGTGCGGCTCAGAT+AGG | + | tig0039098:9337-9356 | Msa1457710:CDS | 60.0% | |
| CCCTATCTGAGCCGCACACT+CGG | - | tig0039098:9341-9360 | None:intergenic | 60.0% | |
| CCGAGTGTGCGGCTCAGATA+GGG | + | tig0039098:9338-9357 | Msa1457710:CDS | 60.0% | |
| ! | GACGACTTGCGTTTTCCCCC+GGG | - | tig0039098:9770-9789 | None:intergenic | 60.0% |
| ! | CGACGACTTGCGTTTTCCCC+CGG | - | tig0039098:9771-9790 | None:intergenic | 60.0% |
| CCTTTCCGAAACTCGGGGCA+AGG | - | tig0039098:9825-9844 | None:intergenic | 60.0% | |
| CCTTGCCCCGAGTTTCGGAA+AGG | + | tig0039098:9822-9841 | Msa1457710:CDS | 60.0% | |
| GCAGCATCATCGCATGCAGC+TGG | + | tig0039098:10140-10159 | Msa1457710:CDS | 60.0% | |
| CGCATGCAGCTGGAACCATG+TGG | + | tig0039098:10150-10169 | Msa1457710:CDS | 60.0% | |
| AGGGGATCCCCAACCAGAGA+AGG | - | tig0039098:10609-10628 | None:intergenic | 60.0% | |
| TCTGGTTGGGGATCCCCTGA+TGG | + | tig0039098:10611-10630 | Msa1457710:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0039098 | gene | 9027 | 10775 | 9027 | ID=Msa1457710;Name=Msa1457710 |
| tig0039098 | mRNA | 9027 | 10775 | 9027 | ID=Msa1457710-mRNA-1;Parent=Msa1457710;Name=Msa1457710-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|582 |
| tig0039098 | exon | 9027 | 10775 | 9027 | ID=Msa1457710-mRNA-1:exon:21336;Parent=Msa1457710-mRNA-1 |
| tig0039098 | CDS | 9027 | 10775 | 9027 | ID=Msa1457710-mRNA-1:cds;Parent=Msa1457710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
