AlfalfaGEDB | Msa1458990

M. sativa cultivar zhongmu-4 / Msa1458990

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1458990	XP_003623323.1	89.308	159	11	1	1	159	1	153	6.57e-85	256

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1458990	sp\|Q9M041\|BH140_ARATH	65.854	82	27	1	22	103	28	108	3.84e-30	118

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1458990	G7KSC0	89.308	159	11	1	1	159	1	153	3.14e-85	256

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TFs/TRs:

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Gene ID	Type	Classification
Msa1458990	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1458990	MtrunA17_Chr7g0243041	89.308	159	11	1	1	159	1	153	6.04e-89	256
Msa1458990	MtrunA17_Chr3g0134001	61.765	68	26	0	24	91	163	230	1.14e-24	95.9
Msa1458990	MtrunA17_Chr8g0384141	62.121	66	25	0	28	93	110	175	2.88e-23	92.4
Msa1458990	MtrunA17_Chr8g0375121	55.294	85	36	1	24	108	124	206	2.64e-18	79.0
Msa1458990	MtrunA17_Chr5g0435021	66.038	53	18	0	39	91	225	277	3.72e-18	79.3
Msa1458990	MtrunA17_Chr5g0402161	62.857	70	26	0	28	97	133	202	4.91e-18	78.2
Msa1458990	MtrunA17_Chr1g0152651	48.101	79	35	2	15	93	263	335	7.42e-18	79.0
Msa1458990	MtrunA17_Chr5g0393721	47.500	80	34	1	34	105	226	305	2.11e-17	77.4
Msa1458990	MtrunA17_Chr1g0207301	42.105	95	44	2	26	112	285	376	4.18e-17	77.0
Msa1458990	MtrunA17_Chr1g0207311	42.424	99	48	2	15	105	180	277	5.70e-17	75.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1458990	AT5G01305.1	65.854	82	27	1	22	103	28	108	1.84e-34	119
Msa1458990	AT3G21330.1	47.727	88	46	0	28	115	265	352	5.55e-22	90.9
Msa1458990	AT5G43175.1	42.553	94	46	1	26	111	126	219	2.96e-20	84.0
Msa1458990	AT4G00120.1	53.030	66	31	0	28	93	108	173	6.52e-20	82.4
Msa1458990	AT1G27740.1	43.878	98	48	3	2	93	132	228	6.60e-18	78.2
Msa1458990	AT4G33880.1	56.667	60	26	0	34	93	268	327	7.91e-18	79.3
Msa1458990	AT5G67060.1	63.235	68	25	0	24	91	114	181	8.82e-18	77.8
Msa1458990	AT5G67060.2	63.235	68	25	0	24	91	102	169	8.97e-18	77.4
Msa1458990	AT3G50330.1	63.235	68	25	0	24	91	111	178	1.58e-17	76.6
Msa1458990	AT5G09750.1	66.667	66	22	0	28	93	115	180	3.12e-17	75.9

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Find 23 sgRNAs with CRISPR-Local

Find 26 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTGCTCTAGTGGTAACTG+TGG	0.694715	tig0039915:-4072	None:intergenic
AAGTTTCACTGAACTTCCTT+TGG	0.367586	tig0039915:-3764	None:intergenic
AGGGTCATGTTTAAAGAGAG+AGG	0.558108	tig0039915:+3720	Msa1458990:CDS
AGTTTCTTAAGAAACAGATT+TGG	0.417653	tig0039915:+3926	Msa1458990:CDS
ATAGACTCAAATGAACCTGA+AGG	0.610939	tig0039915:-4039	None:intergenic
ATTAACTTTGTTGATAATAT+TGG	0.286179	tig0039915:+3964	Msa1458990:CDS
ATTCTTCAGAGTATGATCCC+TGG	0.631016	tig0039915:+3850	Msa1458990:CDS
ATTGGACACTGTTTCAATGT+TGG	0.507524	tig0039915:+3882	Msa1458990:CDS
CTTCAGAGTATGATCCCTGG+TGG	0.671280	tig0039915:+3853	Msa1458990:CDS
GAAGACATAGAATCAGTGAT+AGG	0.495589	tig0039915:+3821	Msa1458990:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTAACAACACTTATTCTTC+AGG	+	tig0039915:3700-3719	Msa1458990:CDS	30.0%
GTAACAACACTTATTCTTCA+GGG	+	tig0039915:3701-3720	Msa1458990:CDS	30.0%
TTTAAAGAGAGAGGAGAAAA+AGG	+	tig0039915:3729-3748	Msa1458990:CDS	30.0%
TTAAAGAGAGAGGAGAAAAA+GGG	+	tig0039915:3730-3749	Msa1458990:CDS	30.0%
TTGAAGAATAATGTTCAGGA+AGG	-	tig0039915:4005-4024	None:intergenic	30.0%
AAGTTTCACTGAACTTCCTT+TGG	-	tig0039915:3767-3786	None:intergenic	35.0%
GAAGACATAGAATCAGTGAT+AGG	+	tig0039915:3821-3840	Msa1458990:CDS	35.0%
ATTGGACACTGTTTCAATGT+TGG	+	tig0039915:3882-3901	Msa1458990:CDS	35.0%
ATAGACTCAAATGAACCTGA+AGG	-	tig0039915:4042-4061	None:intergenic	35.0%
TTTCATAGTGGCATCAAAGA+TGG	-	tig0039915:4127-4146	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0039915	gene	3673	4152	3673	ID=Msa1458990;Name=Msa1458990
tig0039915	mRNA	3673	4152	3673	ID=Msa1458990-mRNA-1;Parent=Msa1458990;Name=Msa1458990-mRNA-1;_AED=0.00;_eAED=0.04;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|159
tig0039915	exon	3673	4152	3673	ID=Msa1458990-mRNA-1:exon:22058;Parent=Msa1458990-mRNA-1
tig0039915	CDS	3673	4152	3673	ID=Msa1458990-mRNA-1:cds;Parent=Msa1458990-mRNA-1

Gene Sequence

>Msa1458990

ATGGAGTGTAACACTAACATTCCGTTTTGTAACAACACTTATTCTTCAGGGTCATGTTTAAAGAGAGAGGAGAAAAAGGGTGTGAAAAAATCCAAAGGAAGTTCAGTGAAACTTTCAACTGATCCACAAAGTGTTGCAGCTAGAGAAAGAAGACATAGAATCAGTGATAGGTTCAAGATTCTTCAGAGTATGATCCCTGGTGGAAGTAAATTGGACACTGTTTCAATGTTGGAAGAAGCTATTCATTATGTTAAGTTTCTTAAGAAACAGATTTGGCTTCATGAAACATTGATTAACTTTGTTGATAATATTGGTGAGTCACACATGTTCCTTCCTGAACATTATTCTTCAAATGATAAAAATATTCCTTCAGGTTCATTTGAGTCTATGCAGAATTTACCACAGTTACCACTAGAGCAGTTCTGTTTTCAAGGAGATGAAGATATCAAAACCATCTTTGATGCCACTATGAAATATTAA

Protein sequence

>Msa1458990

MECNTNIPFCNNTYSSGSCLKREEKKGVKKSKGSSVKLSTDPQSVAARERRHRISDRFKILQSMIPGGSKLDTVSMLEEAIHYVKFLKKQIWLHETLINFVDNIGESHMFLPEHYSSNDKNIPSGSFESMQNLPQLPLEQFCFQGDEDIKTIFDATMKY*