Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459710 | XP_003630065.2 | 92.174 | 460 | 21 | 1 | 1 | 460 | 1 | 445 | 0.0 | 801 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459710 | sp|Q9LX16|EIL4_ARATH | 47.239 | 489 | 197 | 14 | 1 | 457 | 1 | 460 | 5.22e-133 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459710 | G7LAE2 | 92.174 | 460 | 21 | 1 | 1 | 460 | 1 | 445 | 0.0 | 801 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1459710 | TF | EIL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459710 | MtrunA17_Chr8g0382561 | 92.174 | 460 | 21 | 1 | 1 | 460 | 1 | 445 | 0.0 | 801 |
| Msa1459710 | MtrunA17_Chr3g0124291 | 52.928 | 444 | 156 | 9 | 19 | 459 | 29 | 422 | 3.11e-144 | 419 |
| Msa1459710 | MtrunA17_Chr5g0440591 | 45.455 | 407 | 167 | 8 | 12 | 366 | 39 | 442 | 6.04e-115 | 350 |
| Msa1459710 | MtrunA17_Chr3g0118361 | 46.530 | 389 | 145 | 8 | 23 | 356 | 53 | 433 | 2.22e-112 | 344 |
| Msa1459710 | MtrunA17_Chr2g0329151 | 56.439 | 264 | 101 | 5 | 16 | 272 | 32 | 288 | 1.29e-95 | 300 |
| Msa1459710 | MtrunA17_Chr3g0080401 | 45.349 | 258 | 121 | 6 | 73 | 327 | 1 | 241 | 1.07e-71 | 230 |
| Msa1459710 | MtrunA17_Chr6g0476301 | 49.246 | 199 | 99 | 2 | 73 | 271 | 1 | 197 | 3.38e-68 | 222 |
| Msa1459710 | MtrunA17_Chr6g0476291 | 49.246 | 199 | 99 | 2 | 73 | 271 | 1 | 197 | 8.75e-68 | 218 |
| Msa1459710 | MtrunA17_Chr6g0473191 | 49.500 | 200 | 97 | 3 | 73 | 271 | 1 | 197 | 1.36e-67 | 218 |
| Msa1459710 | MtrunA17_Chr7g0260281 | 42.188 | 64 | 37 | 0 | 62 | 125 | 1 | 64 | 6.07e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459710 | AT5G10120.1 | 47.239 | 489 | 197 | 14 | 1 | 457 | 1 | 460 | 5.31e-134 | 395 |
| Msa1459710 | AT5G65100.1 | 43.619 | 525 | 200 | 12 | 17 | 457 | 33 | 545 | 2.06e-130 | 389 |
| Msa1459710 | AT2G27050.1 | 45.477 | 409 | 161 | 8 | 16 | 365 | 43 | 448 | 1.71e-114 | 348 |
| Msa1459710 | AT3G20770.1 | 47.194 | 392 | 157 | 8 | 12 | 356 | 39 | 427 | 1.81e-113 | 347 |
| Msa1459710 | AT1G73730.2 | 48.710 | 310 | 137 | 5 | 16 | 320 | 20 | 312 | 7.42e-97 | 302 |
| Msa1459710 | AT1G73730.1 | 48.710 | 310 | 137 | 5 | 16 | 320 | 32 | 324 | 1.16e-96 | 302 |
| Msa1459710 | AT5G21120.3 | 39.788 | 377 | 180 | 9 | 26 | 363 | 52 | 420 | 2.12e-80 | 258 |
| Msa1459710 | AT5G21120.1 | 39.788 | 377 | 180 | 9 | 26 | 363 | 52 | 420 | 2.12e-80 | 258 |
| Msa1459710 | AT5G21120.2 | 39.788 | 377 | 180 | 9 | 26 | 363 | 59 | 427 | 2.76e-80 | 258 |
Find 78 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATGAAGCAACCTCAATT+TGG | 0.212001 | tig0040430:+2526 | Msa1459710:CDS |
| AGAAGATTCCCTCTTGAAAT+AGG | 0.244472 | tig0040430:+1703 | Msa1459710:CDS |
| AAAACCTCATGATTTGAAAA+AGG | 0.251860 | tig0040430:+1816 | Msa1459710:CDS |
| GTCAGATGATTGGTTGAATA+TGG | 0.270079 | tig0040430:+2287 | Msa1459710:CDS |
| AAATGCATATATGATGAAAT+TGG | 0.270352 | tig0040430:-1607 | None:intergenic |
| GATGAAGCAAAGCTTGTTCT+TGG | 0.284476 | tig0040430:-1981 | None:intergenic |
| CTTTCTGAAGAACCTGTTAC+TGG | 0.287865 | tig0040430:-1469 | None:intergenic |
| TACAAGATTATGGTAGCTTT+TGG | 0.305733 | tig0040430:+2406 | Msa1459710:CDS |
| TTCCCTTGAGCTTCTGTAGC+AGG | 0.356757 | tig0040430:-1282 | None:intergenic |
| GACTTGCAAGATACTACTTT+AGG | 0.357446 | tig0040430:+1637 | Msa1459710:CDS |
| GCTCCTCCATGGTGGCCTAA+TGG | 0.358229 | tig0040430:+1730 | Msa1459710:CDS |
| GATATGACATTACAAGATTA+TGG | 0.370644 | tig0040430:+2396 | Msa1459710:CDS |
| CTTCAGAAAGCTTGCGTGAA+TGG | 0.389051 | tig0040430:+1482 | Msa1459710:CDS |
| TGAGCTTCTGTAGCAGGATT+CGG | 0.390190 | tig0040430:-1276 | None:intergenic |
| GAGGGATGATGGGAAGTGTT+TGG | 0.401632 | tig0040430:-1551 | None:intergenic |
| ATTCCCTCTTGAAATAGGTT+TGG | 0.405477 | tig0040430:+1708 | Msa1459710:CDS |
| TCATGAAGCAACCTCAATTT+GGG | 0.408798 | tig0040430:+2527 | Msa1459710:CDS |
| CTGATGTTGATAAAGTTAGA+AGG | 0.416794 | tig0040430:+1884 | Msa1459710:CDS |
| ATTGCACATGGGAGTGGACT+TGG | 0.420096 | tig0040430:+2452 | Msa1459710:CDS |
| TGTAAGAACAGAGTGATTCA+TGG | 0.427384 | tig0040430:-2227 | None:intergenic |
| GAGAAAGGAAAACCAGTAAC+AGG | 0.433253 | tig0040430:+1457 | Msa1459710:CDS |
| CACCACTGTTCTGTTCCATT+AGG | 0.438620 | tig0040430:-1745 | None:intergenic |
| CTTCTAACTTTATCAACATC+AGG | 0.442768 | tig0040430:-1883 | None:intergenic |
| TTGTTCTTGGTTCATTACTT+TGG | 0.448117 | tig0040430:-1968 | None:intergenic |
| CCCATGCACGAATCACTTTG+TGG | 0.451226 | tig0040430:-2177 | None:intergenic |
| CTTAATGCGGTCTCTTGCGC+TGG | 0.451346 | tig0040430:-2504 | None:intergenic |
| CACCTTCTTCTGATATCTTG+AGG | 0.458091 | tig0040430:-2017 | None:intergenic |
| GGATAATGATAAACAGAGTC+AGG | 0.464569 | tig0040430:+2320 | Msa1459710:CDS |
| TACGGTATTGTGCCAGAGAA+AGG | 0.473904 | tig0040430:+1442 | Msa1459710:CDS |
| CTACAGAAGCTCAAGGGAAA+AGG | 0.474169 | tig0040430:+1286 | Msa1459710:CDS |
| CTTTGAAAATCAACAAGAGT+TGG | 0.476438 | tig0040430:+1573 | Msa1459710:CDS |
| TCAAGAGGGAATCTTCTTTG+TGG | 0.478086 | tig0040430:-1697 | None:intergenic |
| TAATCTTCATCATGTATTTG+AGG | 0.479390 | tig0040430:-1390 | None:intergenic |
| TGGTTGAATATGGATATAGC+AGG | 0.497216 | tig0040430:+2297 | Msa1459710:CDS |
| TGATAAACAGAGTCAGGATC+AGG | 0.497758 | tig0040430:+2326 | Msa1459710:CDS |
| TCTTGAATTGCACATGGGAG+TGG | 0.500811 | tig0040430:+2446 | Msa1459710:CDS |
| AAATAGGTTTGGCTCCTCCA+TGG | 0.512934 | tig0040430:+1719 | Msa1459710:CDS |
| TAAACATGATTTGAATCACT+TGG | 0.514601 | tig0040430:+2056 | Msa1459710:CDS |
| AATCATCTGACAGAAAATCA+TGG | 0.519514 | tig0040430:-2275 | None:intergenic |
| CCACAAAGTGATTCGTGCAT+GGG | 0.534919 | tig0040430:+2177 | Msa1459710:CDS |
| GGCTTGGAAAGTTTCTGTGT+TGG | 0.536507 | tig0040430:+1837 | Msa1459710:CDS |
| TCCACAAAGTGATTCGTGCA+TGG | 0.536930 | tig0040430:+2176 | Msa1459710:CDS |
| CAGCTAAAGATAGTGCAACT+TGG | 0.538503 | tig0040430:+1944 | Msa1459710:CDS |
| TCGTAGCACTGAGAAGAGAA+AGG | 0.545622 | tig0040430:+2086 | Msa1459710:CDS |
| ATCTGACAGAAAATCATGGA+AGG | 0.555309 | tig0040430:-2271 | None:intergenic |
| ATATGTCAAGTCCCAAATTG+AGG | 0.558592 | tig0040430:-2538 | None:intergenic |
| CGTAGCACTGAGAAGAGAAA+GGG | 0.563011 | tig0040430:+2087 | Msa1459710:CDS |
| GGTTGAATATGGATATAGCA+GGG | 0.564355 | tig0040430:+2298 | Msa1459710:CDS |
| AGAGGGAATCTTCTTTGTGG+TGG | 0.566976 | tig0040430:-1694 | None:intergenic |
| ATCATGTTTAGTACTACTAG+AGG | 0.570876 | tig0040430:-2043 | None:intergenic |
| TAATGGAACAGAACAGTGGT+GGG | 0.582068 | tig0040430:+1747 | Msa1459710:CDS |
| TGCCTCAAGATATCAGAAGA+AGG | 0.584848 | tig0040430:+2015 | Msa1459710:CDS |
| CAAATTCAGTCAAAATGCAC+CGG | 0.585132 | tig0040430:+1519 | Msa1459710:CDS |
| ATGACAATATGCAAAGCTCA+AGG | 0.586274 | tig0040430:+1412 | Msa1459710:CDS |
| CAGAAAGCTTGCGTGAATGG+TGG | 0.590210 | tig0040430:+1485 | Msa1459710:CDS |
| TCTGTTCCATTAGGCCACCA+TGG | 0.598249 | tig0040430:-1736 | None:intergenic |
| CAAAAGATGAGGCATCAAGA+AGG | 0.600880 | tig0040430:+1338 | Msa1459710:CDS |
| AAGTGTTTGGAAACTGCATC+CGG | 0.603092 | tig0040430:-1538 | None:intergenic |
| GCAAGATCTTGAATTGCACA+TGG | 0.607490 | tig0040430:+2440 | Msa1459710:CDS |
| AATCCTGCTACAGAAGCTCA+AGG | 0.613828 | tig0040430:+1279 | Msa1459710:CDS |
| GGTTGCTTCATGACTTAATG+CGG | 0.616145 | tig0040430:-2517 | None:intergenic |
| CTAATGGAACAGAACAGTGG+TGG | 0.623346 | tig0040430:+1746 | Msa1459710:CDS |
| TCTGACAGAAAATCATGGAA+GGG | 0.626048 | tig0040430:-2270 | None:intergenic |
| GGAGCCAAACCTATTTCAAG+AGG | 0.626663 | tig0040430:-1712 | None:intergenic |
| GAACAGTGGTGGGGTCAACA+AGG | 0.627644 | tig0040430:+1757 | Msa1459710:CDS |
| TGTTCTTACAGAACAGAACA+AGG | 0.627946 | tig0040430:+2240 | Msa1459710:CDS |
| TAATGAATCGAGAGAGATCG+TGG | 0.629163 | tig0040430:+2374 | Msa1459710:CDS |
| ATCCTGCTACAGAAGCTCAA+GGG | 0.643091 | tig0040430:+1280 | Msa1459710:CDS |
| GTTGAATATGGATATAGCAG+GGG | 0.650528 | tig0040430:+2299 | Msa1459710:CDS |
| TAGGTTTGGCTCCTCCATGG+TGG | 0.654293 | tig0040430:+1722 | Msa1459710:CDS |
| AAACCAACAAGCAAAAGATG+AGG | 0.678086 | tig0040430:+1327 | Msa1459710:CDS |
| AATGGAACAGAACAGTGGTG+GGG | 0.686244 | tig0040430:+1748 | Msa1459710:CDS |
| GAGCCAAACCTATTTCAAGA+GGG | 0.689251 | tig0040430:-1711 | None:intergenic |
| CAGTGGTGGGGTCAACAAGG+TGG | 0.693074 | tig0040430:+1760 | Msa1459710:CDS |
| CAAGATCTTGAATTGCACAT+GGG | 0.698747 | tig0040430:+2441 | Msa1459710:CDS |
| GGTGGTTTGTCAGAACAACA+TGG | 0.708986 | tig0040430:+1778 | Msa1459710:CDS |
| GTTCCATTAGGCCACCATGG+AGG | 0.728866 | tig0040430:-1733 | None:intergenic |
| GGCCTAATGGAACAGAACAG+TGG | 0.776858 | tig0040430:+1743 | Msa1459710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGCATATATGATGAAAT+TGG | - | tig0040430:1610-1629 | None:intergenic | 20.0% |
| !!! | AAATCATGAGGTTTTTTATA+AGG | - | tig0040430:1811-1830 | None:intergenic | 20.0% |
| !! | AAATGCATATATGATGAAAT+TGG | - | tig0040430:1610-1629 | None:intergenic | 20.0% |
| !!! | AAATCATGAGGTTTTTTATA+AGG | - | tig0040430:1811-1830 | None:intergenic | 20.0% |
| !! | TTCTTCTTTTTGTTGATCAA+AGG | - | tig0040430:1215-1234 | None:intergenic | 25.0% |
| ! | TAATCTTCATCATGTATTTG+AGG | - | tig0040430:1393-1412 | None:intergenic | 25.0% |
| ! | AAAACCTCATGATTTGAAAA+AGG | + | tig0040430:1816-1835 | Msa1459710:CDS | 25.0% |
| ! | TAAACATGATTTGAATCACT+TGG | + | tig0040430:2056-2075 | Msa1459710:CDS | 25.0% |
| !!! | TGCTGATTTTGATTTTGATA+AGG | + | tig0040430:2125-2144 | Msa1459710:CDS | 25.0% |
| !! | ATTTTCAGACAAAAGTTCAA+GGG | + | tig0040430:2200-2219 | Msa1459710:CDS | 25.0% |
| ! | GATATGACATTACAAGATTA+TGG | + | tig0040430:2396-2415 | Msa1459710:CDS | 25.0% |
| !! | TTCTTCTTTTTGTTGATCAA+AGG | - | tig0040430:1215-1234 | None:intergenic | 25.0% |
| ! | TAATCTTCATCATGTATTTG+AGG | - | tig0040430:1393-1412 | None:intergenic | 25.0% |
| ! | AAAACCTCATGATTTGAAAA+AGG | + | tig0040430:1816-1835 | Msa1459710:CDS | 25.0% |
| ! | TAAACATGATTTGAATCACT+TGG | + | tig0040430:2056-2075 | Msa1459710:CDS | 25.0% |
| !!! | TGCTGATTTTGATTTTGATA+AGG | + | tig0040430:2125-2144 | Msa1459710:CDS | 25.0% |
| !! | ATTTTCAGACAAAAGTTCAA+GGG | + | tig0040430:2200-2219 | Msa1459710:CDS | 25.0% |
| ! | GATATGACATTACAAGATTA+TGG | + | tig0040430:2396-2415 | Msa1459710:CDS | 25.0% |
| !!! | CTCTTGTTGATTTTCAAAGA+GGG | - | tig0040430:1572-1591 | None:intergenic | 30.0% |
| !!! | ACTCTTGTTGATTTTCAAAG+AGG | - | tig0040430:1573-1592 | None:intergenic | 30.0% |
| ! | CTTTGAAAATCAACAAGAGT+TGG | + | tig0040430:1573-1592 | Msa1459710:CDS | 30.0% |
| !!! | TCATGAGGTTTTTTATAAGG+TGG | - | tig0040430:1808-1827 | None:intergenic | 30.0% |
| CTTCTAACTTTATCAACATC+AGG | - | tig0040430:1886-1905 | None:intergenic | 30.0% | |
| ! | CTGATGTTGATAAAGTTAGA+AGG | + | tig0040430:1884-1903 | Msa1459710:CDS | 30.0% |
| TTGTTCTTGGTTCATTACTT+TGG | - | tig0040430:1971-1990 | None:intergenic | 30.0% | |
| ATCATGTTTAGTACTACTAG+AGG | - | tig0040430:2046-2065 | None:intergenic | 30.0% | |
| ! | GATTTTCAGACAAAAGTTCA+AGG | + | tig0040430:2199-2218 | Msa1459710:CDS | 30.0% |
| AATCATCTGACAGAAAATCA+TGG | - | tig0040430:2278-2297 | None:intergenic | 30.0% | |
| ! | ATGATTTTCTGTCAGATGAT+TGG | + | tig0040430:2277-2296 | Msa1459710:CDS | 30.0% |
| ! | TACAAGATTATGGTAGCTTT+TGG | + | tig0040430:2406-2425 | Msa1459710:CDS | 30.0% |
| !!! | CTCTTGTTGATTTTCAAAGA+GGG | - | tig0040430:1572-1591 | None:intergenic | 30.0% |
| !!! | ACTCTTGTTGATTTTCAAAG+AGG | - | tig0040430:1573-1592 | None:intergenic | 30.0% |
| ! | CTTTGAAAATCAACAAGAGT+TGG | + | tig0040430:1573-1592 | Msa1459710:CDS | 30.0% |
| !!! | TCATGAGGTTTTTTATAAGG+TGG | - | tig0040430:1808-1827 | None:intergenic | 30.0% |
| CTTCTAACTTTATCAACATC+AGG | - | tig0040430:1886-1905 | None:intergenic | 30.0% | |
| ! | CTGATGTTGATAAAGTTAGA+AGG | + | tig0040430:1884-1903 | Msa1459710:CDS | 30.0% |
| TTGTTCTTGGTTCATTACTT+TGG | - | tig0040430:1971-1990 | None:intergenic | 30.0% | |
| ATCATGTTTAGTACTACTAG+AGG | - | tig0040430:2046-2065 | None:intergenic | 30.0% | |
| ! | GATTTTCAGACAAAAGTTCA+AGG | + | tig0040430:2199-2218 | Msa1459710:CDS | 30.0% |
| AATCATCTGACAGAAAATCA+TGG | - | tig0040430:2278-2297 | None:intergenic | 30.0% | |
| ! | ATGATTTTCTGTCAGATGAT+TGG | + | tig0040430:2277-2296 | Msa1459710:CDS | 30.0% |
| ! | TACAAGATTATGGTAGCTTT+TGG | + | tig0040430:2406-2425 | Msa1459710:CDS | 30.0% |
| AAACCAACAAGCAAAAGATG+AGG | + | tig0040430:1327-1346 | Msa1459710:CDS | 35.0% | |
| ATGACAATATGCAAAGCTCA+AGG | + | tig0040430:1412-1431 | Msa1459710:CDS | 35.0% | |
| !! | AAAGCTCAAGGTTTTGTCTA+CGG | + | tig0040430:1424-1443 | Msa1459710:CDS | 35.0% |
| CAAATTCAGTCAAAATGCAC+CGG | + | tig0040430:1519-1538 | Msa1459710:CDS | 35.0% | |
| ! | GATTTTCAAAGAGGGATGAT+GGG | - | tig0040430:1564-1583 | None:intergenic | 35.0% |
| ! | TGATTTTCAAAGAGGGATGA+TGG | - | tig0040430:1565-1584 | None:intergenic | 35.0% |
| GACTTGCAAGATACTACTTT+AGG | + | tig0040430:1637-1656 | Msa1459710:CDS | 35.0% | |
| AGAAGATTCCCTCTTGAAAT+AGG | + | tig0040430:1703-1722 | Msa1459710:CDS | 35.0% | |
| ATTCCCTCTTGAAATAGGTT+TGG | + | tig0040430:1708-1727 | Msa1459710:CDS | 35.0% | |
| !!! | GAGGTTTTTTATAAGGTGGT+GGG | - | tig0040430:1804-1823 | None:intergenic | 35.0% |
| !!! | TGAGGTTTTTTATAAGGTGG+TGG | - | tig0040430:1805-1824 | None:intergenic | 35.0% |
| !!! | CAAGCCTTTTTCAAATCATG+AGG | - | tig0040430:1823-1842 | None:intergenic | 35.0% |
| CTCATGATTTGAAAAAGGCT+TGG | + | tig0040430:1821-1840 | Msa1459710:CDS | 35.0% | |
| TGTAAGAACAGAGTGATTCA+TGG | - | tig0040430:2230-2249 | None:intergenic | 35.0% | |
| TGTTCTTACAGAACAGAACA+AGG | + | tig0040430:2240-2259 | Msa1459710:CDS | 35.0% | |
| TCTGACAGAAAATCATGGAA+GGG | - | tig0040430:2273-2292 | None:intergenic | 35.0% | |
| ATCTGACAGAAAATCATGGA+AGG | - | tig0040430:2274-2293 | None:intergenic | 35.0% | |
| ! | GTCAGATGATTGGTTGAATA+TGG | + | tig0040430:2287-2306 | Msa1459710:CDS | 35.0% |
| TGGTTGAATATGGATATAGC+AGG | + | tig0040430:2297-2316 | Msa1459710:CDS | 35.0% | |
| GGTTGAATATGGATATAGCA+GGG | + | tig0040430:2298-2317 | Msa1459710:CDS | 35.0% | |
| GTTGAATATGGATATAGCAG+GGG | + | tig0040430:2299-2318 | Msa1459710:CDS | 35.0% | |
| GGATAATGATAAACAGAGTC+AGG | + | tig0040430:2320-2339 | Msa1459710:CDS | 35.0% | |
| CAAGATCTTGAATTGCACAT+GGG | + | tig0040430:2441-2460 | Msa1459710:CDS | 35.0% | |
| TCATGAAGCAACCTCAATTT+GGG | + | tig0040430:2527-2546 | Msa1459710:CDS | 35.0% | |
| ATATGTCAAGTCCCAAATTG+AGG | - | tig0040430:2541-2560 | None:intergenic | 35.0% | |
| AAACCAACAAGCAAAAGATG+AGG | + | tig0040430:1327-1346 | Msa1459710:CDS | 35.0% | |
| ATGACAATATGCAAAGCTCA+AGG | + | tig0040430:1412-1431 | Msa1459710:CDS | 35.0% | |
| !! | AAAGCTCAAGGTTTTGTCTA+CGG | + | tig0040430:1424-1443 | Msa1459710:CDS | 35.0% |
| CAAATTCAGTCAAAATGCAC+CGG | + | tig0040430:1519-1538 | Msa1459710:CDS | 35.0% | |
| ! | GATTTTCAAAGAGGGATGAT+GGG | - | tig0040430:1564-1583 | None:intergenic | 35.0% |
| ! | TGATTTTCAAAGAGGGATGA+TGG | - | tig0040430:1565-1584 | None:intergenic | 35.0% |
| GACTTGCAAGATACTACTTT+AGG | + | tig0040430:1637-1656 | Msa1459710:CDS | 35.0% | |
| AGAAGATTCCCTCTTGAAAT+AGG | + | tig0040430:1703-1722 | Msa1459710:CDS | 35.0% | |
| ATTCCCTCTTGAAATAGGTT+TGG | + | tig0040430:1708-1727 | Msa1459710:CDS | 35.0% | |
| !!! | GAGGTTTTTTATAAGGTGGT+GGG | - | tig0040430:1804-1823 | None:intergenic | 35.0% |
| !!! | TGAGGTTTTTTATAAGGTGG+TGG | - | tig0040430:1805-1824 | None:intergenic | 35.0% |
| !!! | CAAGCCTTTTTCAAATCATG+AGG | - | tig0040430:1823-1842 | None:intergenic | 35.0% |
| CTCATGATTTGAAAAAGGCT+TGG | + | tig0040430:1821-1840 | Msa1459710:CDS | 35.0% | |
| TGTAAGAACAGAGTGATTCA+TGG | - | tig0040430:2230-2249 | None:intergenic | 35.0% | |
| TGTTCTTACAGAACAGAACA+AGG | + | tig0040430:2240-2259 | Msa1459710:CDS | 35.0% | |
| TCTGACAGAAAATCATGGAA+GGG | - | tig0040430:2273-2292 | None:intergenic | 35.0% | |
| ATCTGACAGAAAATCATGGA+AGG | - | tig0040430:2274-2293 | None:intergenic | 35.0% | |
| ! | GTCAGATGATTGGTTGAATA+TGG | + | tig0040430:2287-2306 | Msa1459710:CDS | 35.0% |
| TGGTTGAATATGGATATAGC+AGG | + | tig0040430:2297-2316 | Msa1459710:CDS | 35.0% | |
| GGTTGAATATGGATATAGCA+GGG | + | tig0040430:2298-2317 | Msa1459710:CDS | 35.0% | |
| GTTGAATATGGATATAGCAG+GGG | + | tig0040430:2299-2318 | Msa1459710:CDS | 35.0% | |
| GGATAATGATAAACAGAGTC+AGG | + | tig0040430:2320-2339 | Msa1459710:CDS | 35.0% | |
| CAAGATCTTGAATTGCACAT+GGG | + | tig0040430:2441-2460 | Msa1459710:CDS | 35.0% | |
| TCATGAAGCAACCTCAATTT+GGG | + | tig0040430:2527-2546 | Msa1459710:CDS | 35.0% | |
| ATATGTCAAGTCCCAAATTG+AGG | - | tig0040430:2541-2560 | None:intergenic | 35.0% | |
| ! | ATGCCTCATCTTTTGCTTGT+TGG | - | tig0040430:1333-1352 | None:intergenic | 40.0% |
| ! | CAAAAGATGAGGCATCAAGA+AGG | + | tig0040430:1338-1357 | Msa1459710:CDS | 40.0% |
| !!! | GTTACTGGTTTTCCTTTCTC+TGG | - | tig0040430:1457-1476 | None:intergenic | 40.0% |
| GAGAAAGGAAAACCAGTAAC+AGG | + | tig0040430:1457-1476 | Msa1459710:CDS | 40.0% | |
| ! | CTTTCTGAAGAACCTGTTAC+TGG | - | tig0040430:1472-1491 | None:intergenic | 40.0% |
| AAGTGTTTGGAAACTGCATC+CGG | - | tig0040430:1541-1560 | None:intergenic | 40.0% | |
| TCAAGAGGGAATCTTCTTTG+TGG | - | tig0040430:1700-1719 | None:intergenic | 40.0% | |
| GAGCCAAACCTATTTCAAGA+GGG | - | tig0040430:1714-1733 | None:intergenic | 40.0% | |
| TAATGGAACAGAACAGTGGT+GGG | + | tig0040430:1747-1766 | Msa1459710:CDS | 40.0% | |
| CAGCTAAAGATAGTGCAACT+TGG | + | tig0040430:1944-1963 | Msa1459710:CDS | 40.0% | |
| ! | GATGAAGCAAAGCTTGTTCT+TGG | - | tig0040430:1984-2003 | None:intergenic | 40.0% |
| TGCCTCAAGATATCAGAAGA+AGG | + | tig0040430:2015-2034 | Msa1459710:CDS | 40.0% | |
| CACCTTCTTCTGATATCTTG+AGG | - | tig0040430:2020-2039 | None:intergenic | 40.0% | |
| TGATAAACAGAGTCAGGATC+AGG | + | tig0040430:2326-2345 | Msa1459710:CDS | 40.0% | |
| TAATGAATCGAGAGAGATCG+TGG | + | tig0040430:2374-2393 | Msa1459710:CDS | 40.0% | |
| GCAAGATCTTGAATTGCACA+TGG | + | tig0040430:2440-2459 | Msa1459710:CDS | 40.0% | |
| GGACTTGGAAAAAGATAACG+TGG | + | tig0040430:2467-2486 | Msa1459710:CDS | 40.0% | |
| GGTTGCTTCATGACTTAATG+CGG | - | tig0040430:2520-2539 | None:intergenic | 40.0% | |
| GTCATGAAGCAACCTCAATT+TGG | + | tig0040430:2526-2545 | Msa1459710:CDS | 40.0% | |
| ! | ATGCCTCATCTTTTGCTTGT+TGG | - | tig0040430:1333-1352 | None:intergenic | 40.0% |
| ! | CAAAAGATGAGGCATCAAGA+AGG | + | tig0040430:1338-1357 | Msa1459710:CDS | 40.0% |
| !!! | GTTACTGGTTTTCCTTTCTC+TGG | - | tig0040430:1457-1476 | None:intergenic | 40.0% |
| GAGAAAGGAAAACCAGTAAC+AGG | + | tig0040430:1457-1476 | Msa1459710:CDS | 40.0% | |
| ! | CTTTCTGAAGAACCTGTTAC+TGG | - | tig0040430:1472-1491 | None:intergenic | 40.0% |
| AAGTGTTTGGAAACTGCATC+CGG | - | tig0040430:1541-1560 | None:intergenic | 40.0% | |
| TCAAGAGGGAATCTTCTTTG+TGG | - | tig0040430:1700-1719 | None:intergenic | 40.0% | |
| GAGCCAAACCTATTTCAAGA+GGG | - | tig0040430:1714-1733 | None:intergenic | 40.0% | |
| TAATGGAACAGAACAGTGGT+GGG | + | tig0040430:1747-1766 | Msa1459710:CDS | 40.0% | |
| CAGCTAAAGATAGTGCAACT+TGG | + | tig0040430:1944-1963 | Msa1459710:CDS | 40.0% | |
| ! | GATGAAGCAAAGCTTGTTCT+TGG | - | tig0040430:1984-2003 | None:intergenic | 40.0% |
| TGCCTCAAGATATCAGAAGA+AGG | + | tig0040430:2015-2034 | Msa1459710:CDS | 40.0% | |
| CACCTTCTTCTGATATCTTG+AGG | - | tig0040430:2020-2039 | None:intergenic | 40.0% | |
| TGATAAACAGAGTCAGGATC+AGG | + | tig0040430:2326-2345 | Msa1459710:CDS | 40.0% | |
| TAATGAATCGAGAGAGATCG+TGG | + | tig0040430:2374-2393 | Msa1459710:CDS | 40.0% | |
| GCAAGATCTTGAATTGCACA+TGG | + | tig0040430:2440-2459 | Msa1459710:CDS | 40.0% | |
| GGACTTGGAAAAAGATAACG+TGG | + | tig0040430:2467-2486 | Msa1459710:CDS | 40.0% | |
| GGTTGCTTCATGACTTAATG+CGG | - | tig0040430:2520-2539 | None:intergenic | 40.0% | |
| GTCATGAAGCAACCTCAATT+TGG | + | tig0040430:2526-2545 | Msa1459710:CDS | 40.0% | |
| TGAGCTTCTGTAGCAGGATT+CGG | - | tig0040430:1279-1298 | None:intergenic | 45.0% | |
| AATCCTGCTACAGAAGCTCA+AGG | + | tig0040430:1279-1298 | Msa1459710:CDS | 45.0% | |
| ATCCTGCTACAGAAGCTCAA+GGG | + | tig0040430:1280-1299 | Msa1459710:CDS | 45.0% | |
| CTACAGAAGCTCAAGGGAAA+AGG | + | tig0040430:1286-1305 | Msa1459710:CDS | 45.0% | |
| TACGGTATTGTGCCAGAGAA+AGG | + | tig0040430:1442-1461 | Msa1459710:CDS | 45.0% | |
| CTTCAGAAAGCTTGCGTGAA+TGG | + | tig0040430:1482-1501 | Msa1459710:CDS | 45.0% | |
| AGAGGGAATCTTCTTTGTGG+TGG | - | tig0040430:1697-1716 | None:intergenic | 45.0% | |
| GGAGCCAAACCTATTTCAAG+AGG | - | tig0040430:1715-1734 | None:intergenic | 45.0% | |
| ! | AAATAGGTTTGGCTCCTCCA+TGG | + | tig0040430:1719-1738 | Msa1459710:CDS | 45.0% |
| CACCACTGTTCTGTTCCATT+AGG | - | tig0040430:1748-1767 | None:intergenic | 45.0% | |
| CTAATGGAACAGAACAGTGG+TGG | + | tig0040430:1746-1765 | Msa1459710:CDS | 45.0% | |
| AATGGAACAGAACAGTGGTG+GGG | + | tig0040430:1748-1767 | Msa1459710:CDS | 45.0% | |
| ! | GGTGGTTTGTCAGAACAACA+TGG | + | tig0040430:1778-1797 | Msa1459710:CDS | 45.0% |
| GGCTTGGAAAGTTTCTGTGT+TGG | + | tig0040430:1837-1856 | Msa1459710:CDS | 45.0% | |
| ! | TCGTAGCACTGAGAAGAGAA+AGG | + | tig0040430:2086-2105 | Msa1459710:CDS | 45.0% |
| ! | CGTAGCACTGAGAAGAGAAA+GGG | + | tig0040430:2087-2106 | Msa1459710:CDS | 45.0% |
| TCCACAAAGTGATTCGTGCA+TGG | + | tig0040430:2176-2195 | Msa1459710:CDS | 45.0% | |
| CCACAAAGTGATTCGTGCAT+GGG | + | tig0040430:2177-2196 | Msa1459710:CDS | 45.0% | |
| TCTTGAATTGCACATGGGAG+TGG | + | tig0040430:2446-2465 | Msa1459710:CDS | 45.0% | |
| TGAGCTTCTGTAGCAGGATT+CGG | - | tig0040430:1279-1298 | None:intergenic | 45.0% | |
| AATCCTGCTACAGAAGCTCA+AGG | + | tig0040430:1279-1298 | Msa1459710:CDS | 45.0% | |
| ATCCTGCTACAGAAGCTCAA+GGG | + | tig0040430:1280-1299 | Msa1459710:CDS | 45.0% | |
| CTACAGAAGCTCAAGGGAAA+AGG | + | tig0040430:1286-1305 | Msa1459710:CDS | 45.0% | |
| TACGGTATTGTGCCAGAGAA+AGG | + | tig0040430:1442-1461 | Msa1459710:CDS | 45.0% | |
| CTTCAGAAAGCTTGCGTGAA+TGG | + | tig0040430:1482-1501 | Msa1459710:CDS | 45.0% | |
| AGAGGGAATCTTCTTTGTGG+TGG | - | tig0040430:1697-1716 | None:intergenic | 45.0% | |
| GGAGCCAAACCTATTTCAAG+AGG | - | tig0040430:1715-1734 | None:intergenic | 45.0% | |
| ! | AAATAGGTTTGGCTCCTCCA+TGG | + | tig0040430:1719-1738 | Msa1459710:CDS | 45.0% |
| CACCACTGTTCTGTTCCATT+AGG | - | tig0040430:1748-1767 | None:intergenic | 45.0% | |
| CTAATGGAACAGAACAGTGG+TGG | + | tig0040430:1746-1765 | Msa1459710:CDS | 45.0% | |
| AATGGAACAGAACAGTGGTG+GGG | + | tig0040430:1748-1767 | Msa1459710:CDS | 45.0% | |
| ! | GGTGGTTTGTCAGAACAACA+TGG | + | tig0040430:1778-1797 | Msa1459710:CDS | 45.0% |
| GGCTTGGAAAGTTTCTGTGT+TGG | + | tig0040430:1837-1856 | Msa1459710:CDS | 45.0% | |
| ! | TCGTAGCACTGAGAAGAGAA+AGG | + | tig0040430:2086-2105 | Msa1459710:CDS | 45.0% |
| ! | CGTAGCACTGAGAAGAGAAA+GGG | + | tig0040430:2087-2106 | Msa1459710:CDS | 45.0% |
| TCCACAAAGTGATTCGTGCA+TGG | + | tig0040430:2176-2195 | Msa1459710:CDS | 45.0% | |
| CCACAAAGTGATTCGTGCAT+GGG | + | tig0040430:2177-2196 | Msa1459710:CDS | 45.0% | |
| TCTTGAATTGCACATGGGAG+TGG | + | tig0040430:2446-2465 | Msa1459710:CDS | 45.0% | |
| ! | ACGAGCTGAAAAAGCGCATG+TGG | + | tig0040430:1248-1267 | Msa1459710:CDS | 50.0% |
| ! | GCTGAAAAAGCGCATGTGGA+AGG | + | tig0040430:1252-1271 | Msa1459710:CDS | 50.0% |
| TTCCCTTGAGCTTCTGTAGC+AGG | - | tig0040430:1285-1304 | None:intergenic | 50.0% | |
| CAGAAAGCTTGCGTGAATGG+TGG | + | tig0040430:1485-1504 | Msa1459710:CDS | 50.0% | |
| !! | GAGGGATGATGGGAAGTGTT+TGG | - | tig0040430:1554-1573 | None:intergenic | 50.0% |
| TCTGTTCCATTAGGCCACCA+TGG | - | tig0040430:1739-1758 | None:intergenic | 50.0% | |
| GGCCTAATGGAACAGAACAG+TGG | + | tig0040430:1743-1762 | Msa1459710:CDS | 50.0% | |
| CCCATGCACGAATCACTTTG+TGG | - | tig0040430:2180-2199 | None:intergenic | 50.0% | |
| ! | ATTGCACATGGGAGTGGACT+TGG | + | tig0040430:2452-2471 | Msa1459710:CDS | 50.0% |
| ! | ACGAGCTGAAAAAGCGCATG+TGG | + | tig0040430:1248-1267 | Msa1459710:CDS | 50.0% |
| ! | GCTGAAAAAGCGCATGTGGA+AGG | + | tig0040430:1252-1271 | Msa1459710:CDS | 50.0% |
| TTCCCTTGAGCTTCTGTAGC+AGG | - | tig0040430:1285-1304 | None:intergenic | 50.0% | |
| CAGAAAGCTTGCGTGAATGG+TGG | + | tig0040430:1485-1504 | Msa1459710:CDS | 50.0% | |
| !! | GAGGGATGATGGGAAGTGTT+TGG | - | tig0040430:1554-1573 | None:intergenic | 50.0% |
| TCTGTTCCATTAGGCCACCA+TGG | - | tig0040430:1739-1758 | None:intergenic | 50.0% | |
| GGCCTAATGGAACAGAACAG+TGG | + | tig0040430:1743-1762 | Msa1459710:CDS | 50.0% | |
| CCCATGCACGAATCACTTTG+TGG | - | tig0040430:2180-2199 | None:intergenic | 50.0% | |
| ! | ATTGCACATGGGAGTGGACT+TGG | + | tig0040430:2452-2471 | Msa1459710:CDS | 50.0% |
| ! | TAGGTTTGGCTCCTCCATGG+TGG | + | tig0040430:1722-1741 | Msa1459710:CDS | 55.0% |
| GTTCCATTAGGCCACCATGG+AGG | - | tig0040430:1736-1755 | None:intergenic | 55.0% | |
| ! | GAACAGTGGTGGGGTCAACA+AGG | + | tig0040430:1757-1776 | Msa1459710:CDS | 55.0% |
| CTTAATGCGGTCTCTTGCGC+TGG | - | tig0040430:2507-2526 | None:intergenic | 55.0% | |
| ! | TAGGTTTGGCTCCTCCATGG+TGG | + | tig0040430:1722-1741 | Msa1459710:CDS | 55.0% |
| GTTCCATTAGGCCACCATGG+AGG | - | tig0040430:1736-1755 | None:intergenic | 55.0% | |
| ! | GAACAGTGGTGGGGTCAACA+AGG | + | tig0040430:1757-1776 | Msa1459710:CDS | 55.0% |
| CTTAATGCGGTCTCTTGCGC+TGG | - | tig0040430:2507-2526 | None:intergenic | 55.0% | |
| GCTCCTCCATGGTGGCCTAA+TGG | + | tig0040430:1730-1749 | Msa1459710:CDS | 60.0% | |
| ! | CAGTGGTGGGGTCAACAAGG+TGG | + | tig0040430:1760-1779 | Msa1459710:CDS | 60.0% |
| GCTCCTCCATGGTGGCCTAA+TGG | + | tig0040430:1730-1749 | Msa1459710:CDS | 60.0% | |
| ! | CAGTGGTGGGGTCAACAAGG+TGG | + | tig0040430:1760-1779 | Msa1459710:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040430 | gene | 1184 | 2566 | 1184 | ID=Msa1459710;Name=Msa1459710 |
| tig0040430 | mRNA | 1184 | 2566 | 1184 | ID=Msa1459710-mRNA-1;Parent=Msa1459710;Name=Msa1459710-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|460 |
| tig0040430 | exon | 1184 | 2566 | 1184 | ID=Msa1459710-mRNA-1:exon:22394;Parent=Msa1459710-mRNA-1 |
| tig0040430 | CDS | 1184 | 2566 | 1184 | ID=Msa1459710-mRNA-1:cds;Parent=Msa1459710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
