Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459860 | RHN74040.1 | 93.836 | 292 | 7 | 1 | 8 | 299 | 172 | 452 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459860 | sp|Q949T8|ASHR3_ARATH | 65.292 | 291 | 86 | 3 | 10 | 299 | 169 | 445 | 2.27e-139 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459860 | A0A396J7H0 | 93.836 | 292 | 7 | 1 | 8 | 299 | 172 | 452 | 0.0 | 572 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1459860 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459860 | MtrunA17_Chr2g0305371 | 93.836 | 292 | 7 | 1 | 8 | 299 | 172 | 452 | 0.0 | 572 |
| Msa1459860 | MtrunA17_Chr6g0477001 | 49.756 | 205 | 95 | 3 | 102 | 299 | 28 | 231 | 2.28e-65 | 208 |
| Msa1459860 | MtrunA17_Chr3g0125251 | 39.791 | 191 | 106 | 3 | 118 | 299 | 1253 | 1443 | 2.12e-36 | 138 |
| Msa1459860 | MtrunA17_Chr1g0201621 | 34.197 | 193 | 117 | 3 | 116 | 298 | 10 | 202 | 2.45e-34 | 130 |
| Msa1459860 | MtrunA17_Chr1g0201311 | 34.197 | 193 | 117 | 3 | 116 | 298 | 10 | 202 | 4.36e-34 | 129 |
| Msa1459860 | MtrunA17_Chr5g0403241 | 36.129 | 155 | 82 | 3 | 161 | 298 | 1331 | 1485 | 1.67e-23 | 100 |
| Msa1459860 | MtrunA17_Chr2g0297191 | 35.537 | 121 | 78 | 0 | 178 | 298 | 1030 | 1150 | 3.73e-23 | 99.8 |
| Msa1459860 | MtrunA17_Chr4g0075321 | 35.484 | 155 | 83 | 3 | 161 | 298 | 888 | 1042 | 3.05e-21 | 94.0 |
| Msa1459860 | MtrunA17_Chr5g0399801 | 31.020 | 245 | 105 | 11 | 109 | 299 | 827 | 1061 | 2.00e-20 | 91.7 |
| Msa1459860 | MtrunA17_Chr8g0373821 | 33.987 | 153 | 86 | 3 | 161 | 298 | 365 | 517 | 1.68e-19 | 88.6 |
| Msa1459860 | MtrunA17_Chr4g0003511 | 35.673 | 171 | 74 | 7 | 161 | 299 | 858 | 1024 | 4.46e-19 | 87.8 |
| Msa1459860 | MtrunA17_Chr4g0003501 | 31.276 | 243 | 105 | 10 | 109 | 299 | 695 | 927 | 1.08e-18 | 86.7 |
| Msa1459860 | MtrunA17_Chr1g0149611 | 36.000 | 125 | 72 | 2 | 180 | 298 | 363 | 485 | 1.51e-18 | 85.5 |
| Msa1459860 | MtrunA17_Chr5g0401921 | 32.520 | 123 | 81 | 1 | 176 | 298 | 710 | 830 | 1.09e-17 | 83.6 |
| Msa1459860 | MtrunA17_Chr7g0235081 | 31.707 | 123 | 84 | 0 | 177 | 299 | 191 | 313 | 1.36e-17 | 82.0 |
| Msa1459860 | MtrunA17_Chr1g0194631 | 31.169 | 154 | 96 | 3 | 153 | 298 | 575 | 726 | 2.44e-17 | 82.4 |
| Msa1459860 | MtrunA17_Chr3g0126701 | 37.615 | 109 | 66 | 2 | 191 | 298 | 932 | 1039 | 8.87e-17 | 80.9 |
| Msa1459860 | MtrunA17_Chr1g0147121 | 38.182 | 110 | 64 | 3 | 191 | 298 | 903 | 1010 | 1.43e-16 | 80.1 |
| Msa1459860 | MtrunA17_Chr7g0275611 | 36.207 | 116 | 72 | 2 | 184 | 298 | 826 | 940 | 1.85e-16 | 79.7 |
| Msa1459860 | MtrunA17_Chr1g0149581 | 33.600 | 125 | 75 | 2 | 180 | 298 | 1521 | 1643 | 1.39e-15 | 77.4 |
| Msa1459860 | MtrunA17_Chr8g0347071 | 31.746 | 126 | 82 | 3 | 176 | 298 | 801 | 925 | 1.70e-15 | 77.0 |
| Msa1459860 | MtrunA17_Chr7g0221611 | 35.833 | 120 | 76 | 1 | 180 | 298 | 905 | 1024 | 2.07e-15 | 76.6 |
| Msa1459860 | MtrunA17_Chr7g0270001 | 31.707 | 123 | 82 | 1 | 176 | 298 | 144 | 264 | 1.42e-14 | 72.8 |
| Msa1459860 | MtrunA17_Chr7g0255181 | 31.410 | 156 | 87 | 3 | 161 | 296 | 523 | 678 | 4.66e-14 | 72.4 |
| Msa1459860 | MtrunA17_Chr3g0080761 | 31.548 | 168 | 83 | 4 | 161 | 296 | 465 | 632 | 4.89e-14 | 72.4 |
| Msa1459860 | MtrunA17_Chr7g0232981 | 29.187 | 209 | 112 | 6 | 116 | 298 | 289 | 487 | 1.86e-13 | 70.5 |
| Msa1459860 | MtrunA17_Chr8g0354821 | 29.670 | 182 | 96 | 5 | 147 | 296 | 475 | 656 | 8.79e-12 | 65.5 |
| Msa1459860 | MtrunA17_Chr6g0460921 | 30.052 | 193 | 102 | 10 | 135 | 296 | 206 | 396 | 2.24e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459860 | AT4G30860.1 | 65.292 | 291 | 86 | 3 | 10 | 299 | 169 | 445 | 2.31e-140 | 405 |
| Msa1459860 | AT2G44150.1 | 52.261 | 199 | 85 | 2 | 111 | 299 | 37 | 235 | 4.37e-61 | 198 |
| Msa1459860 | AT3G59960.3 | 51.337 | 187 | 83 | 3 | 121 | 299 | 44 | 230 | 4.24e-50 | 167 |
| Msa1459860 | AT3G59960.2 | 51.337 | 187 | 83 | 3 | 121 | 299 | 44 | 230 | 4.24e-50 | 167 |
| Msa1459860 | AT3G59960.4 | 51.337 | 187 | 83 | 3 | 121 | 299 | 44 | 230 | 4.24e-50 | 167 |
| Msa1459860 | AT3G59960.1 | 49.500 | 200 | 90 | 4 | 108 | 299 | 34 | 230 | 2.15e-49 | 167 |
| Msa1459860 | AT1G77300.2 | 34.031 | 191 | 117 | 3 | 118 | 299 | 955 | 1145 | 7.02e-35 | 134 |
| Msa1459860 | AT1G77300.1 | 34.031 | 191 | 117 | 3 | 118 | 299 | 955 | 1145 | 6.85e-34 | 131 |
| Msa1459860 | AT1G76710.4 | 35.385 | 195 | 116 | 3 | 114 | 298 | 13 | 207 | 2.10e-32 | 125 |
| Msa1459860 | AT1G76710.2 | 35.385 | 195 | 116 | 3 | 114 | 298 | 13 | 207 | 2.17e-32 | 125 |
| Msa1459860 | AT1G76710.1 | 35.385 | 195 | 116 | 3 | 114 | 298 | 13 | 207 | 2.17e-32 | 125 |
| Msa1459860 | AT1G76710.3 | 35.385 | 195 | 116 | 3 | 114 | 298 | 13 | 207 | 2.36e-32 | 125 |
| Msa1459860 | AT5G42400.7 | 35.537 | 121 | 78 | 0 | 178 | 298 | 1247 | 1367 | 2.90e-24 | 103 |
| Msa1459860 | AT5G42400.2 | 35.537 | 121 | 78 | 0 | 178 | 298 | 1247 | 1367 | 2.90e-24 | 103 |
| Msa1459860 | AT5G42400.8 | 35.537 | 121 | 78 | 0 | 178 | 298 | 1247 | 1367 | 2.90e-24 | 103 |
| Msa1459860 | AT5G42400.5 | 35.537 | 121 | 78 | 0 | 178 | 298 | 1247 | 1367 | 2.90e-24 | 103 |
| Msa1459860 | AT5G42400.4 | 35.537 | 121 | 78 | 0 | 178 | 298 | 1247 | 1367 | 2.90e-24 | 103 |
| Msa1459860 | AT5G42400.1 | 35.537 | 121 | 78 | 0 | 178 | 298 | 1247 | 1367 | 2.90e-24 | 103 |
| Msa1459860 | AT5G42400.3 | 35.537 | 121 | 78 | 0 | 178 | 298 | 1247 | 1367 | 2.90e-24 | 103 |
| Msa1459860 | AT5G42400.6 | 35.537 | 121 | 78 | 0 | 178 | 298 | 1247 | 1367 | 2.90e-24 | 103 |
| Msa1459860 | AT2G23740.1 | 35.948 | 153 | 81 | 3 | 161 | 296 | 1196 | 1348 | 4.85e-20 | 90.9 |
| Msa1459860 | AT2G23740.3 | 35.948 | 153 | 81 | 3 | 161 | 296 | 1203 | 1355 | 5.28e-20 | 90.9 |
| Msa1459860 | AT2G23740.6 | 35.948 | 153 | 81 | 3 | 161 | 296 | 1203 | 1355 | 5.28e-20 | 90.9 |
| Msa1459860 | AT2G23740.2 | 35.948 | 153 | 81 | 3 | 161 | 296 | 1203 | 1355 | 5.28e-20 | 90.9 |
| Msa1459860 | AT1G02580.1 | 39.394 | 132 | 72 | 3 | 171 | 298 | 533 | 660 | 4.69e-19 | 87.8 |
| Msa1459860 | AT4G02020.1 | 31.818 | 154 | 95 | 3 | 153 | 298 | 672 | 823 | 7.27e-19 | 87.4 |
| Msa1459860 | AT4G27910.1 | 40.000 | 110 | 62 | 3 | 191 | 298 | 896 | 1003 | 5.23e-18 | 84.7 |
| Msa1459860 | AT2G35160.5 | 29.921 | 254 | 145 | 9 | 70 | 298 | 484 | 729 | 7.87e-18 | 84.3 |
| Msa1459860 | AT2G35160.2 | 29.921 | 254 | 145 | 9 | 70 | 298 | 520 | 765 | 8.31e-18 | 84.3 |
| Msa1459860 | AT2G35160.3 | 29.921 | 254 | 145 | 9 | 70 | 298 | 520 | 765 | 8.31e-18 | 84.3 |
| Msa1459860 | AT2G35160.1 | 29.921 | 254 | 145 | 9 | 70 | 298 | 520 | 765 | 8.31e-18 | 84.3 |
| Msa1459860 | AT2G35160.4 | 29.921 | 254 | 145 | 9 | 70 | 298 | 520 | 765 | 8.31e-18 | 84.3 |
| Msa1459860 | AT3G61740.1 | 35.659 | 129 | 78 | 4 | 174 | 298 | 867 | 994 | 7.96e-16 | 78.2 |
| Msa1459860 | AT2G23380.2 | 31.707 | 123 | 82 | 1 | 176 | 298 | 521 | 641 | 8.12e-16 | 78.2 |
| Msa1459860 | AT3G61740.2 | 35.659 | 129 | 78 | 4 | 174 | 298 | 831 | 958 | 8.18e-16 | 78.2 |
| Msa1459860 | AT2G23380.1 | 31.707 | 123 | 82 | 1 | 176 | 298 | 748 | 868 | 9.80e-16 | 78.2 |
| Msa1459860 | AT5G53430.1 | 37.615 | 109 | 66 | 2 | 191 | 298 | 912 | 1019 | 1.27e-15 | 77.8 |
| Msa1459860 | AT1G05830.2 | 34.167 | 120 | 78 | 1 | 180 | 298 | 919 | 1038 | 2.47e-14 | 73.9 |
| Msa1459860 | AT1G05830.4 | 34.167 | 120 | 78 | 1 | 180 | 298 | 919 | 1038 | 2.47e-14 | 73.9 |
| Msa1459860 | AT1G05830.1 | 34.167 | 120 | 78 | 1 | 180 | 298 | 919 | 1038 | 2.47e-14 | 73.9 |
| Msa1459860 | AT1G05830.3 | 34.167 | 120 | 78 | 1 | 180 | 298 | 919 | 1038 | 2.47e-14 | 73.9 |
| Msa1459860 | AT2G31650.1 | 34.711 | 121 | 76 | 2 | 180 | 298 | 898 | 1017 | 6.76e-14 | 72.4 |
| Msa1459860 | AT2G23740.4 | 35.714 | 112 | 59 | 2 | 161 | 259 | 1203 | 1314 | 1.82e-12 | 68.2 |
| Msa1459860 | AT2G23740.5 | 35.714 | 112 | 59 | 2 | 161 | 259 | 1203 | 1314 | 1.82e-12 | 68.2 |
| Msa1459860 | AT1G17770.1 | 32.222 | 180 | 85 | 9 | 149 | 296 | 485 | 659 | 1.10e-11 | 65.9 |
Find 61 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATTCCTCGTTAGTAAA+AGG | 0.240022 | tig0040497:+3181 | Msa1459860:intergenic |
| GAGTTTATAATTGAGTATAT+TGG | 0.295105 | tig0040497:-1610 | Msa1459860:CDS |
| TCCAGACGGATCACGGCTTC+TGG | 0.306365 | tig0040497:+4386 | Msa1459860:intergenic |
| CCACTTCTCCAAAACACAAT+TGG | 0.330110 | tig0040497:+1227 | Msa1459860:intergenic |
| CTTTATGTGAACAAAGGCTT+TGG | 0.359165 | tig0040497:-1365 | Msa1459860:CDS |
| GCCATGGTGCACATTTAGTA+TGG | 0.361114 | tig0040497:+4408 | Msa1459860:intergenic |
| CTGTGATCCCAATTGTGTTT+TGG | 0.364566 | tig0040497:-1235 | Msa1459860:CDS |
| ATGTCACTTGTTGAAGTATC+AGG | 0.371137 | tig0040497:+3574 | Msa1459860:intergenic |
| GCTTTGGGACATGAAATATA+AGG | 0.372894 | tig0040497:-1349 | Msa1459860:CDS |
| TACTTCAACAAGTGACATTT+CGG | 0.375623 | tig0040497:-3569 | Msa1459860:intron |
| TATTAAGTCCTTAAGTGTTC+AGG | 0.376440 | tig0040497:-4492 | Msa1459860:CDS |
| ACAATTACAGTAAATAGTTC+TGG | 0.391884 | tig0040497:+4287 | Msa1459860:intergenic |
| CTGCGCCTTATGTGTGTATA+TGG | 0.400552 | tig0040497:+3112 | Msa1459860:intergenic |
| ATCCTGGGCAAGCTGTTTGT+TGG | 0.425111 | tig0040497:-4358 | Msa1459860:CDS |
| AGCCATTGACATACGATTAC+AGG | 0.429757 | tig0040497:-762 | Msa1459860:CDS |
| GTTTCTTCCAGGCAAGTAGA+TGG | 0.431444 | tig0040497:-832 | Msa1459860:intron |
| GAAGCACACCTGAACACTTA+AGG | 0.446709 | tig0040497:+4484 | Msa1459860:intergenic |
| TCCTCGTTAGTAAAAGGAAC+AGG | 0.447278 | tig0040497:+3187 | Msa1459860:intergenic |
| GCTCTGAAAATTGTAGTAAT+CGG | 0.452019 | tig0040497:-1846 | Msa1459860:CDS |
| CACTTCTCCAAAACACAATT+GGG | 0.454841 | tig0040497:+1228 | Msa1459860:intergenic |
| TTTATGTGAACAAAGGCTTT+GGG | 0.456264 | tig0040497:-1364 | Msa1459860:CDS |
| ATCCGTCTGGAAGATCATCC+TGG | 0.457358 | tig0040497:-4374 | Msa1459860:CDS |
| AATTCAAGATTGACTTCACT+TGG | 0.461493 | tig0040497:-3165 | Msa1459860:CDS |
| TTTGTTGGAGACATTCTGAT+TGG | 0.462721 | tig0040497:-4343 | Msa1459860:CDS |
| GCCAGAAGCCGTGATCCGTC+TGG | 0.463661 | tig0040497:-4387 | Msa1459860:CDS |
| ACAATAGATGCAACTTTCAA+AGG | 0.468582 | tig0040497:-1285 | Msa1459860:CDS |
| CGGATCACGGCTTCTGGCCA+TGG | 0.469588 | tig0040497:+4392 | Msa1459860:intergenic |
| CACCGCCATATACACACATA+AGG | 0.474545 | tig0040497:-3117 | Msa1459860:CDS |
| ACACGCATTGGTGTATTTGC+TGG | 0.475579 | tig0040497:-805 | Msa1459860:CDS |
| TAAGCTGCTCAAAGGCTTGT+CGG | 0.478644 | tig0040497:-1870 | Msa1459860:CDS |
| CTTTGGGACATGAAATATAA+GGG | 0.484978 | tig0040497:-1348 | Msa1459860:CDS |
| GCTGGTCGTTCAATAGAAGT+TGG | 0.492356 | tig0040497:-787 | Msa1459860:CDS |
| GAAAGACATGGACAATAAGA+TGG | 0.503086 | tig0040497:-3143 | Msa1459860:CDS |
| TGATTGGCGCCTGGACGAAA+AGG | 0.503824 | tig0040497:-4327 | Msa1459860:CDS |
| GAGACATTCTGATTGGCGCC+TGG | 0.505561 | tig0040497:-4336 | Msa1459860:CDS |
| CACAATTGGGATCACAGCTA+TGG | 0.531828 | tig0040497:+1241 | Msa1459860:intergenic |
| AGTGATGTAGATGATGATGT+TGG | 0.532334 | tig0040497:-2900 | Msa1459860:CDS |
| GCTGTTGAAACAATTGAGAA+AGG | 0.536186 | tig0040497:-1634 | Msa1459860:CDS |
| TACCTGTAATCGTATGTCAA+TGG | 0.542756 | tig0040497:+760 | Msa1459860:intergenic |
| ATAATTGAGTATATTGGAGA+AGG | 0.543225 | tig0040497:-1604 | Msa1459860:intron |
| GTAGTAATCGGCCATTTCGA+AGG | 0.546181 | tig0040497:-1834 | Msa1459860:CDS |
| ATGATCTTCCAGACGGATCA+CGG | 0.549967 | tig0040497:+4379 | Msa1459860:intergenic |
| CTTATGTGTGTATATGGCGG+TGG | 0.556153 | tig0040497:+3118 | Msa1459860:intergenic |
| CTCCAACAAACAGCTTGCCC+AGG | 0.560922 | tig0040497:+4356 | Msa1459860:intergenic |
| GTTGCGGTGTGTCCGTTGCA+CGG | 0.565898 | tig0040497:-4438 | Msa1459860:CDS |
| AAAACAAATCAGGATTGTCA+AGG | 0.573764 | tig0040497:-1809 | Msa1459860:intron |
| TAGTAATCGGCCATTTCGAA+GGG | 0.576596 | tig0040497:-1833 | Msa1459860:CDS |
| TCCGTCTGGAAGATCATCCT+GGG | 0.584179 | tig0040497:-4373 | Msa1459860:CDS |
| TGACTTCACTTGGAAAGACA+TGG | 0.596141 | tig0040497:-3155 | Msa1459860:CDS |
| GTGATGTAGATGATGATGTT+GGG | 0.596814 | tig0040497:-2899 | Msa1459860:CDS |
| GCTCTAATGATTGTGTATGC+AGG | 0.602774 | tig0040497:-2854 | Msa1459860:intron |
| AGAGCAAGTAGAACTGCAGT+TGG | 0.609503 | tig0040497:+2872 | Msa1459860:intergenic |
| AGCAAAAGTTGAATTTGTTG+CGG | 0.611628 | tig0040497:-4454 | Msa1459860:CDS |
| ATGATGCTTTATGTGAACAA+AGG | 0.611648 | tig0040497:-1371 | Msa1459860:CDS |
| TATGGAAAGCCACCGTGCAA+CGG | 0.614877 | tig0040497:+4426 | Msa1459860:intergenic |
| GCCCAGGATGATCTTCCAGA+CGG | 0.632053 | tig0040497:+4372 | Msa1459860:intergenic |
| TCAATGCATAAGCTGCTCAA+AGG | 0.643718 | tig0040497:-1878 | Msa1459860:CDS |
| GTAGATGGTGAAACACGCAT+TGG | 0.665236 | tig0040497:-817 | Msa1459860:CDS |
| CGCCTTATGTGTGTATATGG+CGG | 0.691662 | tig0040497:+3115 | Msa1459860:intergenic |
| TCCATACTAAATGTGCACCA+TGG | 0.709799 | tig0040497:-4409 | Msa1459860:CDS |
| GCGGTGTGTCCGTTGCACGG+TGG | 0.789830 | tig0040497:-4435 | Msa1459860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAATATTTCATAAGT+TGG | - | tig0040497:3304-3323 | Msa1459860:intron | 10.0% |
| !!! | ATTTTAATATTTCATAAGTT+GGG | - | tig0040497:3305-3324 | Msa1459860:intron | 10.0% |
| !!! | TTTTAAGTATATATTTTTTG+GGG | - | tig0040497:3501-3520 | Msa1459860:intron | 10.0% |
| !! | TTATGTCAAAGATATTATAA+TGG | - | tig0040497:1307-1326 | Msa1459860:CDS | 15.0% |
| !!! | CTGTTTTATATTTTAGTTAA+AGG | + | tig0040497:1418-1437 | Msa1459860:intergenic | 15.0% |
| !! | CTTAATATTAGATGAATAAT+TGG | - | tig0040497:1793-1812 | Msa1459860:intron | 15.0% |
| !!! | AATAAAGGAATTTGTTTAAT+TGG | - | tig0040497:1822-1841 | Msa1459860:CDS | 15.0% |
| !! | AAAATATTTGATTCTACAAT+GGG | + | tig0040497:2249-2268 | Msa1459860:intergenic | 15.0% |
| !! | AAAAATATTTGATTCTACAA+TGG | + | tig0040497:2250-2269 | Msa1459860:intergenic | 15.0% |
| !! | TATAGAATAATAGAATTAGT+TGG | - | tig0040497:2705-2724 | Msa1459860:intron | 15.0% |
| !! | ATAGAATAATAGAATTAGTT+GGG | - | tig0040497:2706-2725 | Msa1459860:intron | 15.0% |
| !!! | AATAATTTTGGCAAATATAA+AGG | + | tig0040497:2981-3000 | Msa1459860:intergenic | 15.0% |
| !!! | AAAGTATTATTTCATAAGTT+GGG | - | tig0040497:3266-3285 | Msa1459860:intron | 15.0% |
| !! | ACATAATATTATTACTTATC+AGG | - | tig0040497:3344-3363 | Msa1459860:intron | 15.0% |
| !! | CATAATATTATTACTTATCA+GGG | - | tig0040497:3345-3364 | Msa1459860:intron | 15.0% |
| !!! | TTAATTGATAGCAATATTAT+AGG | + | tig0040497:3535-3554 | Msa1459860:intergenic | 15.0% |
| !!! | TTTTCTTAGTATAGTAAAAA+TGG | - | tig0040497:4322-4341 | Msa1459860:CDS | 15.0% |
| !!! | AAAAATGTATAGTTTGATTT+TGG | + | tig0040497:4380-4399 | Msa1459860:intergenic | 15.0% |
| !! | ACAGAAAAAATAACTACATT+TGG | + | tig0040497:1041-1060 | Msa1459860:intergenic | 20.0% |
| !!! | ATGTAGTTATTTTTTCTGTT+TGG | - | tig0040497:1042-1061 | Msa1459860:intron | 20.0% |
| !!! | TATTTTAGTTAAAGGACAAT+GGG | + | tig0040497:1410-1429 | Msa1459860:intergenic | 20.0% |
| !!! | ATATTTTAGTTAAAGGACAA+TGG | + | tig0040497:1411-1430 | Msa1459860:intergenic | 20.0% |
| !! | CATACAATTTCTGATATATT+TGG | - | tig0040497:1456-1475 | Msa1459860:intron | 20.0% |
| !! | TTAAACGTCAAATAAGTTTA+CGG | + | tig0040497:1496-1515 | Msa1459860:intergenic | 20.0% |
| !!! | CTTTTATTGCAATTTTTCAT+TGG | - | tig0040497:1608-1627 | Msa1459860:CDS | 20.0% |
| !! | AATAATTGGTTGAGAAATAA+AGG | - | tig0040497:1807-1826 | Msa1459860:intron | 20.0% |
| !! | TACATATCTGTTATTAGTTA+AGG | + | tig0040497:2308-2327 | Msa1459860:intergenic | 20.0% |
| !! | ATTTAAAAGGAAATAAAGAG+TGG | + | tig0040497:2436-2455 | Msa1459860:intergenic | 20.0% |
| !! | TTTATAGGTGTAAATAATGT+AGG | - | tig0040497:2463-2482 | Msa1459860:intron | 20.0% |
| !!! | GACATATTTTATGTTTTCTA+CGG | + | tig0040497:2681-2700 | Msa1459860:intergenic | 20.0% |
| !!! | AAAAAATATCATTTTCTCGA+AGG | + | tig0040497:3020-3039 | Msa1459860:intergenic | 20.0% |
| !! | CAACTTATGAAATAATACTT+TGG | + | tig0040497:3267-3286 | Msa1459860:intergenic | 20.0% |
| !!! | CAAAGTATTATTTCATAAGT+TGG | - | tig0040497:3265-3284 | Msa1459860:intron | 20.0% |
| !! | GAGTTTATAATTGAGTATAT+TGG | - | tig0040497:3637-3656 | Msa1459860:intron | 20.0% |
| !! | TAGATTATAGTATGAAAGAA+GGG | + | tig0040497:3717-3736 | Msa1459860:intergenic | 20.0% |
| !! | TTAGATTATAGTATGAAAGA+AGG | + | tig0040497:3718-3737 | Msa1459860:intergenic | 20.0% |
| !!! | ACCAAATTATTGCTAAATTT+TGG | - | tig0040497:4132-4151 | Msa1459860:intron | 20.0% |
| !! | TCCAAAATTTAGCAATAATT+TGG | + | tig0040497:4136-4155 | Msa1459860:intergenic | 20.0% |
| !!! | CATTTTTGCTAAAACTATTA+TGG | - | tig0040497:4393-4412 | Msa1459860:CDS | 20.0% |
| ! | ACAATTACAGTAAATAGTTC+TGG | + | tig0040497:963-982 | Msa1459860:intergenic | 25.0% |
| ! | AAACAAAAACAACTGAGAAT+AGG | + | tig0040497:1123-1142 | Msa1459860:intergenic | 25.0% |
| !! | TTTTCTTTCCTAATAGCTAT+TGG | - | tig0040497:1168-1187 | Msa1459860:intron | 25.0% |
| ! | TTTCTTTCCTAATAGCTATT+GGG | - | tig0040497:1169-1188 | Msa1459860:intron | 25.0% |
| ! | TGTTTATAACTCACATGTAT+TGG | - | tig0040497:1229-1248 | Msa1459860:CDS | 25.0% |
| ! | TATCTTTGACATAATGCATA+GGG | + | tig0040497:1301-1320 | Msa1459860:intergenic | 25.0% |
| ! | ATATCTTTGACATAATGCAT+AGG | + | tig0040497:1302-1321 | Msa1459860:intergenic | 25.0% |
| !! | ATGGAATTTTGTGAAGTTTT+TGG | - | tig0040497:1326-1345 | Msa1459860:CDS | 25.0% |
| !!! | ATTTTGTGAAGTTTTTGGTT+AGG | - | tig0040497:1331-1350 | Msa1459860:CDS | 25.0% |
| !!! | ATTTTAGTTAAAGGACAATG+GGG | + | tig0040497:1409-1428 | Msa1459860:intergenic | 25.0% |
| ! | CGTTTAAATTGTCTTACAAA+TGG | - | tig0040497:1509-1528 | Msa1459860:intron | 25.0% |
| ! | GAATATACTTCATAGAATTG+CGG | - | tig0040497:1541-1560 | Msa1459860:intron | 25.0% |
| !!! | ATTGCAATTTTTCATTGGTT+AGG | - | tig0040497:1613-1632 | Msa1459860:CDS | 25.0% |
| ! | TATATTATGCAAAGAAATGC+TGG | + | tig0040497:1763-1782 | Msa1459860:intergenic | 25.0% |
| !!! | TGGGAAGTATTTGTATAAAT+TGG | - | tig0040497:2725-2744 | Msa1459860:intron | 25.0% |
| !!! | GGGAAGTATTTGTATAAATT+GGG | - | tig0040497:2726-2745 | Msa1459860:intron | 25.0% |
| !!! | GGAAGTATTTGTATAAATTG+GGG | - | tig0040497:2727-2746 | Msa1459860:intron | 25.0% |
| !! | CTTCTGCTATTCAATAATTT+TGG | + | tig0040497:2993-3012 | Msa1459860:intergenic | 25.0% |
| ! | AAGGAAATATAAGATGTGAT+TGG | + | tig0040497:3190-3209 | Msa1459860:intergenic | 25.0% |
| ! | TAATTACAACTACAATGACA+AGG | + | tig0040497:3209-3228 | Msa1459860:intergenic | 25.0% |
| ! | ATAATTGAGTATATTGGAGA+AGG | - | tig0040497:3643-3662 | Msa1459860:intron | 25.0% |
| ! | AGATTATAGTATGAAAGAAG+GGG | + | tig0040497:3716-3735 | Msa1459860:intergenic | 25.0% |
| !! | TATAAAATGCCATTTATCCA+AGG | - | tig0040497:3758-3777 | Msa1459860:intron | 25.0% |
| !!! | AGAAAACATTTCTGGTTAAA+TGG | + | tig0040497:3843-3862 | Msa1459860:intergenic | 25.0% |
| !! | ATTTTTACATGTGTGAGATT+CGG | - | tig0040497:3930-3949 | Msa1459860:intron | 25.0% |
| !!! | CATTATGTTACTACTTTTCA+AGG | - | tig0040497:4081-4100 | Msa1459860:intron | 25.0% |
| !!! | ATTTTTTCCTCGCAAATTTT+AGG | + | tig0040497:4188-4207 | Msa1459860:intergenic | 25.0% |
| ! | CAAATTTACCTTACAATACA+AGG | - | tig0040497:4278-4297 | Msa1459860:intron | 25.0% |
| !! | AGTTATTTCCTTGTATTGTA+AGG | + | tig0040497:4289-4308 | Msa1459860:intergenic | 25.0% |
| ! | TTACAATACAAGGAAATAAC+TGG | - | tig0040497:4288-4307 | Msa1459860:intron | 25.0% |
| !!! | TATAGTTTGATTTTGGCAAA+TGG | + | tig0040497:4373-4392 | Msa1459860:intergenic | 25.0% |
| TATTAAGTCCTTAAGTGTTC+AGG | - | tig0040497:755-774 | Msa1459860:CDS | 30.0% | |
| !! | AGCAAAAGTTGAATTTGTTG+CGG | - | tig0040497:793-812 | Msa1459860:CDS | 30.0% |
| AACTACATTTGGATATGACA+AGG | + | tig0040497:1030-1049 | Msa1459860:intergenic | 30.0% | |
| TTCTTTCCTAATAGCTATTG+GGG | - | tig0040497:1170-1189 | Msa1459860:intron | 30.0% | |
| !! | TAACTCACATGTATTGGTTA+TGG | - | tig0040497:1235-1254 | Msa1459860:CDS | 30.0% |
| AGTAATATACAGCCAATTAG+AGG | + | tig0040497:1264-1283 | Msa1459860:intergenic | 30.0% | |
| !!! | AAGTTTTTGGTTAGGATTTG+AGG | - | tig0040497:1339-1358 | Msa1459860:CDS | 30.0% |
| TACTTCAACAAGTGACATTT+CGG | - | tig0040497:1678-1697 | Msa1459860:intron | 30.0% | |
| AGCTTATATCAAAACATGCA+AGG | + | tig0040497:1865-1884 | Msa1459860:intergenic | 30.0% | |
| !! | TAATTGTTTGGTGTCTCATA+CGG | + | tig0040497:1941-1960 | Msa1459860:intergenic | 30.0% |
| TATGAGACACCAAACAATTA+TGG | - | tig0040497:1941-1960 | Msa1459860:intron | 30.0% | |
| ! | TGCATGGGAATTTTGTAATT+TGG | - | tig0040497:1975-1994 | Msa1459860:intron | 30.0% |
| CAAATGACAAAATACTTCCT+GGG | + | tig0040497:2040-2059 | Msa1459860:intergenic | 30.0% | |
| TTGAATTCCTCGTTAGTAAA+AGG | + | tig0040497:2069-2088 | Msa1459860:intergenic | 30.0% | |
| ! | AATTCAAGATTGACTTCACT+TGG | - | tig0040497:2082-2101 | Msa1459860:intron | 30.0% |
| TATAGTGCTTCAATATGTGA+AGG | + | tig0040497:2164-2183 | Msa1459860:intergenic | 30.0% | |
| TTTAGTTGAAAAAGCCCTTT+CGG | - | tig0040497:2495-2514 | Msa1459860:intron | 30.0% | |
| ATATCGATATAGAACCGAAA+GGG | + | tig0040497:2512-2531 | Msa1459860:intergenic | 30.0% | |
| TATATCGATATAGAACCGAA+AGG | + | tig0040497:2513-2532 | Msa1459860:intergenic | 30.0% | |
| !! | TTTTGTTATCCTAGACATGA+AGG | - | tig0040497:2556-2575 | Msa1459860:intron | 30.0% |
| TACAACCTATCTAATCCATA+GGG | + | tig0040497:2656-2675 | Msa1459860:intergenic | 30.0% | |
| CTGAGGAAATATGAAAGAAT+AGG | + | tig0040497:2846-2865 | Msa1459860:intergenic | 30.0% | |
| AAGAAAAAACACGTTTACTG+AGG | + | tig0040497:2863-2882 | Msa1459860:intergenic | 30.0% | |
| TCACTTCATTCCTAACTTAA+GGG | - | tig0040497:3100-3119 | Msa1459860:intron | 30.0% | |
| AACTAATTCTCCCTTAAGTT+AGG | + | tig0040497:3113-3132 | Msa1459860:intergenic | 30.0% | |
| TAACTTAAGGGAGAATTAGT+TGG | - | tig0040497:3112-3131 | Msa1459860:intron | 30.0% | |
| GTTGTAAAACAAACATGCTT+TGG | - | tig0040497:3229-3248 | Msa1459860:intron | 30.0% | |
| !! | GCTCTGAAAATTGTAGTAAT+CGG | - | tig0040497:3401-3420 | Msa1459860:intron | 30.0% |
| !! | ATTTGTTTTTCCCTTCGAAA+TGG | + | tig0040497:3427-3446 | Msa1459860:intergenic | 30.0% |
| AAAACAAATCAGGATTGTCA+AGG | - | tig0040497:3438-3457 | Msa1459860:intron | 30.0% | |
| !! | TTTCTGGTTAAATGGAGAAA+CGG | + | tig0040497:3835-3854 | Msa1459860:intergenic | 30.0% |
| ATGATGCTTTATGTGAACAA+AGG | - | tig0040497:3876-3895 | Msa1459860:intron | 30.0% | |
| TTTATGTGAACAAAGGCTTT+GGG | - | tig0040497:3883-3902 | Msa1459860:intron | 30.0% | |
| !! | CTTTGGGACATGAAATATAA+GGG | - | tig0040497:3899-3918 | Msa1459860:intron | 30.0% |
| ACAATAGATGCAACTTTCAA+AGG | - | tig0040497:3962-3981 | Msa1459860:intron | 30.0% | |
| !! | TTGATAGTGTATGCATTTGT+CGG | + | tig0040497:4261-4280 | Msa1459860:intergenic | 30.0% |
| AAATGGAGACAAATCTGTAT+TGG | - | tig0040497:4339-4358 | Msa1459860:CDS | 30.0% | |
| AATGGAGACAAATCTGTATT+GGG | - | tig0040497:4340-4359 | Msa1459860:CDS | 30.0% | |
| AAACTATTATGGTTTCTTCC+AGG | - | tig0040497:4404-4423 | Msa1459860:CDS | 30.0% | |
| TTTGTTGGAGACATTCTGAT+TGG | - | tig0040497:904-923 | Msa1459860:intron | 35.0% | |
| GGATATGACAAGGAATGTAA+TGG | + | tig0040497:1020-1039 | Msa1459860:intergenic | 35.0% | |
| TCTTTCCTAATAGCTATTGG+GGG | - | tig0040497:1171-1190 | Msa1459860:intron | 35.0% | |
| TGGTTATGGAAACCTCTAAT+TGG | - | tig0040497:1249-1268 | Msa1459860:CDS | 35.0% | |
| ATGACTGTTGAATGTGTTTC+AGG | - | tig0040497:1645-1664 | Msa1459860:CDS | 35.0% | |
| ! | ATGTCACTTGTTGAAGTATC+AGG | + | tig0040497:1676-1695 | Msa1459860:intergenic | 35.0% |
| AATCCCAAACCGTATATGTA+AGG | + | tig0040497:1916-1935 | Msa1459860:intergenic | 35.0% | |
| ACACCAAACAATTATGGCTA+TGG | - | tig0040497:1947-1966 | Msa1459860:intron | 35.0% | |
| CATCCATAGCCATAATTGTT+TGG | + | tig0040497:1953-1972 | Msa1459860:intergenic | 35.0% | |
| CAAACAATTATGGCTATGGA+TGG | - | tig0040497:1951-1970 | Msa1459860:intron | 35.0% | |
| GCAAATGACAAAATACTTCC+TGG | + | tig0040497:2041-2060 | Msa1459860:intergenic | 35.0% | |
| GAAAGACATGGACAATAAGA+TGG | - | tig0040497:2104-2123 | Msa1459860:intron | 35.0% | |
| ! | AGTGATGTAGATGATGATGT+TGG | - | tig0040497:2347-2366 | Msa1459860:intron | 35.0% |
| ! | GTGATGTAGATGATGATGTT+GGG | - | tig0040497:2348-2367 | Msa1459860:intron | 35.0% |
| GTACAACCTATCTAATCCAT+AGG | + | tig0040497:2657-2676 | Msa1459860:intergenic | 35.0% | |
| GGGAATACAATGATAGAGAA+GGG | - | tig0040497:2747-2766 | Msa1459860:intron | 35.0% | |
| ! | TCCTTTTGTGAATAAAGCAG+TGG | - | tig0040497:2788-2807 | Msa1459860:intron | 35.0% |
| ! | AATGGAAGCATGTTGTATGT+TGG | + | tig0040497:2941-2960 | Msa1459860:intergenic | 35.0% |
| GTATCCAAGTCAAAGATGAA+TGG | + | tig0040497:2959-2978 | Msa1459860:intergenic | 35.0% | |
| AGCATGCTCACATTAACAAA+GGG | + | tig0040497:3050-3069 | Msa1459860:intergenic | 35.0% | |
| CTTAAGTTAGGAATGAAGTG+AGG | + | tig0040497:3101-3120 | Msa1459860:intergenic | 35.0% | |
| CTCACTTCATTCCTAACTTA+AGG | - | tig0040497:3099-3118 | Msa1459860:intron | 35.0% | |
| ATATCAGGCATACAACAACA+GGG | + | tig0040497:3154-3173 | Msa1459860:intergenic | 35.0% | |
| GGTACATGTAGATAGATATC+AGG | + | tig0040497:3169-3188 | Msa1459860:intergenic | 35.0% | |
| TTCGAAGGGAAAAACAAATC+AGG | - | tig0040497:3428-3447 | Msa1459860:intron | 35.0% | |
| GCTGTTGAAACAATTGAGAA+AGG | - | tig0040497:3613-3632 | Msa1459860:intron | 35.0% | |
| TCAAGACATCCTTGGATAAA+TGG | + | tig0040497:3770-3789 | Msa1459860:intergenic | 35.0% | |
| TATGACTTTCAAGACATCCT+TGG | + | tig0040497:3778-3797 | Msa1459860:intergenic | 35.0% | |
| ACTGCAACAGAAAACATTTC+TGG | + | tig0040497:3851-3870 | Msa1459860:intergenic | 35.0% | |
| CTTTATGTGAACAAAGGCTT+TGG | - | tig0040497:3882-3901 | Msa1459860:intron | 35.0% | |
| !! | GCTTTGGGACATGAAATATA+AGG | - | tig0040497:3898-3917 | Msa1459860:intron | 35.0% |
| CACTTCTCCAAAACACAATT+GGG | + | tig0040497:4022-4041 | Msa1459860:intergenic | 35.0% | |
| !! | TAGCAATAATTTGGTGCTGT+AGG | + | tig0040497:4127-4146 | Msa1459860:intergenic | 35.0% |
| TTTAGGTGCAAATCACTATC+AGG | + | tig0040497:4171-4190 | Msa1459860:intergenic | 35.0% | |
| ATTTGCACCTAAAATTTGCG+AGG | - | tig0040497:4178-4197 | Msa1459860:intron | 35.0% | |
| TACCTGTAATCGTATGTCAA+TGG | + | tig0040497:4490-4509 | Msa1459860:intergenic | 35.0% | |
| TCCATACTAAATGTGCACCA+TGG | - | tig0040497:838-857 | Msa1459860:intron | 40.0% | |
| ! | AGAAATTGACCTTTTCGTCC+AGG | + | tig0040497:932-951 | Msa1459860:intergenic | 40.0% |
| GTCTTACAAATGGTCACTTC+TGG | - | tig0040497:1519-1538 | Msa1459860:intron | 40.0% | |
| CAACAAGTGACATTTCGGTA+AGG | - | tig0040497:1683-1702 | Msa1459860:intron | 40.0% | |
| CCAGCAATATGTTCTACTAG+TGG | + | tig0040497:1891-1910 | Msa1459860:intergenic | 40.0% | |
| CCACTAGTAGAACATATTGC+TGG | - | tig0040497:1888-1907 | Msa1459860:intron | 40.0% | |
| TTGCTGGTGCCTTACATATA+CGG | - | tig0040497:1904-1923 | Msa1459860:intron | 40.0% | |
| GTGCCTTACATATACGGTTT+GGG | - | tig0040497:1910-1929 | Msa1459860:intron | 40.0% | |
| ACAAAATACTTCCTGGGAGA+AGG | + | tig0040497:2034-2053 | Msa1459860:intergenic | 40.0% | |
| TCCTCGTTAGTAAAAGGAAC+AGG | + | tig0040497:2063-2082 | Msa1459860:intergenic | 40.0% | |
| TGACTTCACTTGGAAAGACA+TGG | - | tig0040497:2092-2111 | Msa1459860:intron | 40.0% | |
| TTAAGGCTAGCAACATGACA+AGG | + | tig0040497:2291-2310 | Msa1459860:intergenic | 40.0% | |
| !!! | CACTACGCTTTTTCTTCACT+AGG | + | tig0040497:2331-2350 | Msa1459860:intergenic | 40.0% |
| GCTCTAATGATTGTGTATGC+AGG | - | tig0040497:2393-2412 | Msa1459860:intron | 40.0% | |
| CATGAAGGTCTACAGAGATA+TGG | - | tig0040497:2571-2590 | Msa1459860:intron | 40.0% | |
| AAGGTCTACAGAGATATGGA+TGG | - | tig0040497:2575-2594 | Msa1459860:intron | 40.0% | |
| CTATGTTTACCTTCACCCTA+TGG | - | tig0040497:2638-2657 | Msa1459860:intron | 40.0% | |
| CTATCTAATCCATAGGGTGA+AGG | + | tig0040497:2650-2669 | Msa1459860:intergenic | 40.0% | |
| !! | CTTCACCCTATGGATTAGAT+AGG | - | tig0040497:2648-2667 | Msa1459860:intron | 40.0% |
| GGGGAATACAATGATAGAGA+AGG | - | tig0040497:2746-2765 | Msa1459860:intron | 40.0% | |
| ! | GCCACTGCTTTATTCACAAA+AGG | + | tig0040497:2792-2811 | Msa1459860:intergenic | 40.0% |
| GCTTCCATTCATCTTTGACT+TGG | - | tig0040497:2952-2971 | Msa1459860:intron | 40.0% | |
| GAGCATGCTCACATTAACAA+AGG | + | tig0040497:3051-3070 | Msa1459860:intergenic | 40.0% | |
| ATGTGAGCATGCTCTGATAT+AGG | - | tig0040497:3057-3076 | Msa1459860:intron | 40.0% | |
| TATCAGGCATACAACAACAG+GGG | + | tig0040497:3153-3172 | Msa1459860:intergenic | 40.0% | |
| GATATCAGGCATACAACAAC+AGG | + | tig0040497:3155-3174 | Msa1459860:intergenic | 40.0% | |
| TCAATGCATAAGCTGCTCAA+AGG | - | tig0040497:3369-3388 | Msa1459860:intron | 40.0% | |
| TAGTAATCGGCCATTTCGAA+GGG | - | tig0040497:3414-3433 | Msa1459860:intron | 40.0% | |
| ! | TGTACTCAGACTGAGTTTTG+TGG | - | tig0040497:3577-3596 | Msa1459860:CDS | 40.0% |
| !! | TCAGACTGAGTTTTGTGGAT+GGG | - | tig0040497:3582-3601 | Msa1459860:CDS | 40.0% |
| ! | CTGTGATCCCAATTGTGTTT+TGG | - | tig0040497:4012-4031 | Msa1459860:intron | 40.0% |
| CCACTTCTCCAAAACACAAT+TGG | + | tig0040497:4023-4042 | Msa1459860:intergenic | 40.0% | |
| !!! | CCAATTGTGTTTTGGAGAAG+TGG | - | tig0040497:4020-4039 | Msa1459860:intron | 40.0% |
| AGCCATTGACATACGATTAC+AGG | - | tig0040497:4485-4504 | Msa1459860:CDS | 40.0% | |
| GAAGCACACCTGAACACTTA+AGG | + | tig0040497:766-785 | Msa1459860:intergenic | 45.0% | |
| GCCATGGTGCACATTTAGTA+TGG | + | tig0040497:842-861 | Msa1459860:intergenic | 45.0% | |
| ATGATCTTCCAGACGGATCA+CGG | + | tig0040497:871-890 | Msa1459860:intergenic | 45.0% | |
| TTCCTAATAGCTATTGGGGG+AGG | - | tig0040497:1174-1193 | Msa1459860:intron | 45.0% | |
| AGGACACATCAGGGAAGAAA+GGG | - | tig0040497:1194-1213 | Msa1459860:intron | 45.0% | |
| GGTGCCTTACATATACGGTT+TGG | - | tig0040497:1909-1928 | Msa1459860:intron | 45.0% | |
| TATGGCTATGGATGGTTGCA+TGG | - | tig0040497:1959-1978 | Msa1459860:intron | 45.0% | |
| ATGGCTATGGATGGTTGCAT+GGG | - | tig0040497:1960-1979 | Msa1459860:intron | 45.0% | |
| ! | GCCTGTTCCTTTTACTAACG+AGG | - | tig0040497:2059-2078 | Msa1459860:intron | 45.0% |
| CTTATGTGTGTATATGGCGG+TGG | + | tig0040497:2132-2151 | Msa1459860:intergenic | 45.0% | |
| CACCGCCATATACACACATA+AGG | - | tig0040497:2130-2149 | Msa1459860:intron | 45.0% | |
| CGCCTTATGTGTGTATATGG+CGG | + | tig0040497:2135-2154 | Msa1459860:intergenic | 45.0% | |
| CTGCGCCTTATGTGTGTATA+TGG | + | tig0040497:2138-2157 | Msa1459860:intergenic | 45.0% | |
| AGAGCAAGTAGAACTGCAGT+TGG | + | tig0040497:2378-2397 | Msa1459860:intergenic | 45.0% | |
| CTCTGTAGACCTTCATGTCT+AGG | + | tig0040497:2568-2587 | Msa1459860:intergenic | 45.0% | |
| TAAGCTGCTCAAAGGCTTGT+CGG | - | tig0040497:3377-3396 | Msa1459860:intron | 45.0% | |
| GTAGTAATCGGCCATTTCGA+AGG | - | tig0040497:3413-3432 | Msa1459860:intron | 45.0% | |
| !! | CTCAGACTGAGTTTTGTGGA+TGG | - | tig0040497:3581-3600 | Msa1459860:CDS | 45.0% |
| !! | CAGACTGAGTTTTGTGGATG+GGG | - | tig0040497:3583-3602 | Msa1459860:CDS | 45.0% |
| CACAATTGGGATCACAGCTA+TGG | + | tig0040497:4009-4028 | Msa1459860:intergenic | 45.0% | |
| ATCAAGAGCAAGTACAGCAG+AGG | + | tig0040497:4058-4077 | Msa1459860:intergenic | 45.0% | |
| GAGACAAATCTGTATTGGGC+TGG | - | tig0040497:4344-4363 | Msa1459860:CDS | 45.0% | |
| ! | ACAAATCTGTATTGGGCTGG+AGG | - | tig0040497:4347-4366 | Msa1459860:CDS | 45.0% |
| GTTTCTTCCAGGCAAGTAGA+TGG | - | tig0040497:4415-4434 | Msa1459860:CDS | 45.0% | |
| TGTTTCACCATCTACTTGCC+TGG | + | tig0040497:4425-4444 | Msa1459860:intergenic | 45.0% | |
| GTAGATGGTGAAACACGCAT+TGG | - | tig0040497:4430-4449 | Msa1459860:CDS | 45.0% | |
| ! | ACACGCATTGGTGTATTTGC+TGG | - | tig0040497:4442-4461 | Msa1459860:CDS | 45.0% |
| GCTGGTCGTTCAATAGAAGT+TGG | - | tig0040497:4460-4479 | Msa1459860:CDS | 45.0% | |
| !! | TATAAAAAGATTAATTTAAA+AGG | + | tig0040497:2449-2468 | Msa1459860:intergenic | 5.0% |
| !!! | TTTTAAATTAATCTTTTTAT+AGG | - | tig0040497:2448-2467 | Msa1459860:intron | 5.0% |
| !!! | ATTTTTAAGTATATATTTTT+TGG | - | tig0040497:3499-3518 | Msa1459860:intron | 5.0% |
| !!! | TTTTTAAGTATATATTTTTT+GGG | - | tig0040497:3500-3519 | Msa1459860:intron | 5.0% |
| TATGGAAAGCCACCGTGCAA+CGG | + | tig0040497:824-843 | Msa1459860:intergenic | 50.0% | |
| ATCCGTCTGGAAGATCATCC+TGG | - | tig0040497:873-892 | Msa1459860:intron | 50.0% | |
| TCCGTCTGGAAGATCATCCT+GGG | - | tig0040497:874-893 | Msa1459860:intron | 50.0% | |
| ATCCTGGGCAAGCTGTTTGT+TGG | - | tig0040497:889-908 | Msa1459860:intron | 50.0% | |
| GTCCTCCCCCAATAGCTATT+AGG | + | tig0040497:1179-1198 | Msa1459860:intergenic | 50.0% | |
| TATTGGGGGAGGACACATCA+GGG | - | tig0040497:1185-1204 | Msa1459860:intron | 50.0% | |
| GAGGACACATCAGGGAAGAA+AGG | - | tig0040497:1193-1212 | Msa1459860:intron | 50.0% | |
| GGACACATCAGGGAAGAAAG+GGG | - | tig0040497:1195-1214 | Msa1459860:intron | 50.0% | |
| AATACTTCCTGGGAGAAGGC+AGG | + | tig0040497:2030-2049 | Msa1459860:intergenic | 50.0% | |
| ! | AGCAGTGGCTCTGTTGTAGA+AGG | - | tig0040497:2803-2822 | Msa1459860:intron | 50.0% |
| ! | GCAGTGGCTCTGTTGTAGAA+GGG | - | tig0040497:2804-2823 | Msa1459860:intron | 50.0% |
| ! | CAGTGGCTCTGTTGTAGAAG+GGG | - | tig0040497:2805-2824 | Msa1459860:intron | 50.0% |
| ! | AGTGGCTCTGTTGTAGAAGG+GGG | - | tig0040497:2806-2825 | Msa1459860:intron | 50.0% |
| ! | GTTTTGTGGATGGGGAGTTG+AGG | - | tig0040497:3591-3610 | Msa1459860:intron | 50.0% |
| GCCCAGGATGATCTTCCAGA+CGG | + | tig0040497:878-897 | Msa1459860:intergenic | 55.0% | |
| CTCCAACAAACAGCTTGCCC+AGG | + | tig0040497:894-913 | Msa1459860:intergenic | 55.0% | |
| GAGACATTCTGATTGGCGCC+TGG | - | tig0040497:911-930 | Msa1459860:intron | 55.0% | |
| TGATTGGCGCCTGGACGAAA+AGG | - | tig0040497:920-939 | Msa1459860:intron | 55.0% | |
| CTATTGGGGGAGGACACATC+AGG | - | tig0040497:1184-1203 | Msa1459860:intron | 55.0% | |
| !! | TCAGGGAAGAAAGGGGCACT+CGG | - | tig0040497:1202-1221 | Msa1459860:intron | 55.0% |
| GTTGCGGTGTGTCCGTTGCA+CGG | - | tig0040497:809-828 | Msa1459860:CDS | 60.0% | |
| TCCAGACGGATCACGGCTTC+TGG | + | tig0040497:864-883 | Msa1459860:intergenic | 60.0% | |
| TTCCTGGGAGAAGGCAGGAC+AGG | + | tig0040497:2025-2044 | Msa1459860:intergenic | 60.0% | |
| CGGATCACGGCTTCTGGCCA+TGG | + | tig0040497:858-877 | Msa1459860:intergenic | 65.0% | |
| GCCAGAAGCCGTGATCCGTC+TGG | - | tig0040497:860-879 | Msa1459860:intron | 65.0% | |
| GACCTGTCCTGCCTTCTCCC+AGG | - | tig0040497:2020-2039 | Msa1459860:intron | 65.0% | |
| GCGGTGTGTCCGTTGCACGG+TGG | - | tig0040497:812-831 | Msa1459860:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040497 | gene | 753 | 4516 | 753 | ID=Msa1459860;Name=Msa1459860 |
| tig0040497 | mRNA | 753 | 4516 | 753 | ID=Msa1459860-mRNA-1;Parent=Msa1459860;Name=Msa1459860-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.71|0.62|1|1|1|8|0|299 |
| tig0040497 | exon | 4295 | 4516 | 4295 | ID=Msa1459860-mRNA-1:exon:22462;Parent=Msa1459860-mRNA-1 |
| tig0040497 | exon | 3570 | 3602 | 3570 | ID=Msa1459860-mRNA-1:exon:22461;Parent=Msa1459860-mRNA-1 |
| tig0040497 | exon | 3113 | 3227 | 3113 | ID=Msa1459860-mRNA-1:exon:22460;Parent=Msa1459860-mRNA-1 |
| tig0040497 | exon | 2855 | 2948 | 2855 | ID=Msa1459860-mRNA-1:exon:22459;Parent=Msa1459860-mRNA-1 |
| tig0040497 | exon | 1810 | 1903 | 1810 | ID=Msa1459860-mRNA-1:exon:22458;Parent=Msa1459860-mRNA-1 |
| tig0040497 | exon | 1605 | 1683 | 1605 | ID=Msa1459860-mRNA-1:exon:22457;Parent=Msa1459860-mRNA-1 |
| tig0040497 | exon | 1228 | 1399 | 1228 | ID=Msa1459860-mRNA-1:exon:22456;Parent=Msa1459860-mRNA-1 |
| tig0040497 | exon | 753 | 843 | 753 | ID=Msa1459860-mRNA-1:exon:22455;Parent=Msa1459860-mRNA-1 |
| tig0040497 | CDS | 4295 | 4516 | 4295 | ID=Msa1459860-mRNA-1:cds;Parent=Msa1459860-mRNA-1 |
| tig0040497 | CDS | 3570 | 3602 | 3570 | ID=Msa1459860-mRNA-1:cds;Parent=Msa1459860-mRNA-1 |
| tig0040497 | CDS | 3113 | 3227 | 3113 | ID=Msa1459860-mRNA-1:cds;Parent=Msa1459860-mRNA-1 |
| tig0040497 | CDS | 2855 | 2948 | 2855 | ID=Msa1459860-mRNA-1:cds;Parent=Msa1459860-mRNA-1 |
| tig0040497 | CDS | 1810 | 1903 | 1810 | ID=Msa1459860-mRNA-1:cds;Parent=Msa1459860-mRNA-1 |
| tig0040497 | CDS | 1605 | 1683 | 1605 | ID=Msa1459860-mRNA-1:cds;Parent=Msa1459860-mRNA-1 |
| tig0040497 | CDS | 1228 | 1399 | 1228 | ID=Msa1459860-mRNA-1:cds;Parent=Msa1459860-mRNA-1 |
| tig0040497 | CDS | 753 | 843 | 753 | ID=Msa1459860-mRNA-1:cds;Parent=Msa1459860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
