Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459940 | XP_003618007.1 | 82.940 | 551 | 61 | 3 | 7 | 556 | 14 | 532 | 0.0 | 875 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459940 | G7K4Z3 | 82.940 | 551 | 61 | 3 | 7 | 556 | 14 | 532 | 0.0 | 875 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1459940 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459940 | MtrunA17_Chr5g0447971 | 82.940 | 551 | 61 | 3 | 7 | 556 | 14 | 532 | 0.0 | 875 |
| Msa1459940 | MtrunA17_Chr3g0086321 | 67.811 | 233 | 71 | 1 | 328 | 556 | 161 | 393 | 1.75e-99 | 306 |
| Msa1459940 | MtrunA17_Chr3g0086321 | 42.274 | 343 | 146 | 9 | 65 | 392 | 80 | 385 | 2.02e-60 | 205 |
| Msa1459940 | MtrunA17_Chr3g0086321 | 30.568 | 229 | 123 | 5 | 264 | 458 | 161 | 387 | 3.84e-16 | 80.5 |
| Msa1459940 | MtrunA17_Chr3g0086321 | 29.518 | 166 | 93 | 3 | 385 | 548 | 82 | 225 | 6.56e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459940 | AT5G61190.4 | 24.590 | 244 | 143 | 7 | 317 | 551 | 188 | 399 | 6.44e-12 | 68.9 |
| Msa1459940 | AT5G61190.4 | 26.852 | 216 | 114 | 9 | 365 | 546 | 298 | 503 | 9.44e-11 | 65.1 |
| Msa1459940 | AT5G61190.2 | 24.590 | 244 | 143 | 7 | 317 | 551 | 188 | 399 | 6.44e-12 | 68.9 |
| Msa1459940 | AT5G61190.2 | 26.852 | 216 | 114 | 9 | 365 | 546 | 298 | 503 | 9.44e-11 | 65.1 |
| Msa1459940 | AT5G61190.10 | 24.896 | 241 | 140 | 7 | 317 | 548 | 188 | 396 | 7.55e-12 | 68.9 |
| Msa1459940 | AT5G61190.10 | 26.852 | 216 | 114 | 9 | 365 | 546 | 298 | 503 | 8.89e-11 | 65.5 |
| Msa1459940 | AT5G61190.1 | 24.896 | 241 | 140 | 7 | 317 | 548 | 188 | 396 | 8.04e-12 | 68.9 |
| Msa1459940 | AT5G61190.8 | 24.590 | 244 | 143 | 7 | 317 | 551 | 188 | 399 | 8.57e-12 | 68.6 |
| Msa1459940 | AT5G61190.5 | 24.896 | 241 | 140 | 7 | 317 | 548 | 188 | 396 | 9.27e-12 | 68.6 |
| Msa1459940 | AT5G61190.6 | 24.896 | 241 | 140 | 7 | 317 | 548 | 188 | 396 | 9.34e-12 | 68.6 |
| Msa1459940 | AT5G61190.9 | 24.896 | 241 | 140 | 7 | 317 | 548 | 188 | 396 | 9.87e-12 | 68.6 |
| Msa1459940 | AT5G61190.11 | 24.590 | 244 | 143 | 7 | 317 | 551 | 188 | 399 | 1.04e-11 | 68.6 |
| Msa1459940 | AT5G61190.7 | 24.896 | 241 | 140 | 7 | 317 | 548 | 94 | 302 | 1.06e-11 | 68.6 |
| Msa1459940 | AT5G61190.3 | 24.896 | 241 | 140 | 7 | 317 | 548 | 94 | 302 | 1.06e-11 | 68.6 |
Find 116 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGGCAACTTCAAATTTA+TGG | 0.103793 | tig0040550:-10671 | Msa1459940:CDS |
| ATTCAAAGACAAGCATTAAT+TGG | 0.294362 | tig0040550:-9906 | Msa1459940:CDS |
| CGCGCAGAAGGCAAACTTGC+AGG | 0.304037 | tig0040550:+10701 | None:intergenic |
| ATACTATCAACCTGTTTCTT+AGG | 0.309233 | tig0040550:+10407 | None:intergenic |
| TGCGCAGAAGGCAAACTTGC+AGG | 0.309844 | tig0040550:+10788 | None:intergenic |
| CTTCTGCGCGTAATGGTTCC+TGG | 0.318364 | tig0040550:-10688 | Msa1459940:CDS |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | tig0040550:+10149 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | tig0040550:+10341 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | tig0040550:+9861 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | tig0040550:+9957 | None:intergenic |
| TCCAATGCTTCTAATATTGC+AGG | 0.326872 | tig0040550:-10930 | None:intergenic |
| GTTTCTCTAATACAAGTAAA+AGG | 0.332058 | tig0040550:+7797 | None:intergenic |
| CCGCTGCCAACACCGACTTT+TGG | 0.333602 | tig0040550:+8192 | None:intergenic |
| ACCGCAATAGGCACTTCAAT+TGG | 0.345252 | tig0040550:-8153 | Msa1459940:CDS |
| TCACCATAGCAGCATGATTA+TGG | 0.346041 | tig0040550:+7953 | None:intergenic |
| ATCCACGGTCAAGCGTTAAT+TGG | 0.351888 | tig0040550:-10452 | Msa1459940:CDS |
| GTTCTTCAAGTGTTTCTTAC+CGG | 0.360756 | tig0040550:+8233 | None:intergenic |
| GGCTCTGATTGCTCGCGTAC+AGG | 0.361042 | tig0040550:+10428 | None:intergenic |
| ACAATCAGAGCCTGCGAAAC+AGG | 0.362586 | tig0040550:-10255 | Msa1459940:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.362815 | tig0040550:-10098 | Msa1459940:CDS |
| GCCAATGCTTCTAATATTGC+CGG | 0.369202 | tig0040550:-10756 | Msa1459940:CDS |
| TGAACAGAAGGCAAACTTGC+AGG | 0.371807 | tig0040550:+10875 | None:intergenic |
| GAAACAGGTTGATTCTGTTA+AGG | 0.378526 | tig0040550:-9856 | Msa1459940:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.381545 | tig0040550:-10194 | Msa1459940:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.381545 | tig0040550:-10290 | Msa1459940:CDS |
| TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | tig0040550:+10355 | None:intergenic |
| TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | tig0040550:+9971 | None:intergenic |
| TTTCGTAGGCTCTGATTGTT+CGG | 0.392564 | tig0040550:+10067 | None:intergenic |
| GGCTCTGATTGTTCGGCTAC+AGG | 0.393012 | tig0040550:+10362 | None:intergenic |
| GGCTCTGATTGTTCGGCTGC+AGG | 0.400148 | tig0040550:+9978 | None:intergenic |
| GCAATCAGAGCCTAAGAAAC+AGG | 0.410131 | tig0040550:-10417 | Msa1459940:CDS |
| AAGCTTTGCTGACTTTGGTT+TGG | 0.410273 | tig0040550:+10621 | None:intergenic |
| GGCTCTGATTGTTCTGCTAC+AGG | 0.410383 | tig0040550:+9882 | None:intergenic |
| TCTGAAAGCTTTGCTGACTT+TGG | 0.410594 | tig0040550:+10616 | None:intergenic |
| GCCATAAATTTGAAGTTGCC+AGG | 0.413010 | tig0040550:+10670 | None:intergenic |
| GACTGCAAAATTACAAGCAT+TGG | 0.415529 | tig0040550:+10842 | None:intergenic |
| ACTACCACCACCACCGCAAT+AGG | 0.416616 | tig0040550:-8165 | Msa1459940:CDS |
| GGCTCTGATTGTTCGGCTAC+AGG | 0.423574 | tig0040550:+10074 | None:intergenic |
| GCCTGCAATATTAGAAGCAT+TGG | 0.428224 | tig0040550:+10929 | None:intergenic |
| ACAATCAGAGCCTACGAAAC+AGG | 0.430644 | tig0040550:-10063 | Msa1459940:CDS |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.432492 | tig0040550:-9871 | Msa1459940:CDS |
| GGTGATTATTTAAATTTGCC+TGG | 0.434831 | tig0040550:+7983 | None:intergenic |
| GGCTCTGATTGTTCAGCTAC+AGG | 0.438343 | tig0040550:+10170 | None:intergenic |
| GGCTCTGATTGTTCGGCGAC+AGG | 0.441022 | tig0040550:+10266 | None:intergenic |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | tig0040550:-10351 | Msa1459940:CDS |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | tig0040550:-9967 | Msa1459940:CDS |
| AATGCCATCATTAGACTTCA+AGG | 0.445716 | tig0040550:+8398 | None:intergenic |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.446022 | tig0040550:-10159 | Msa1459940:CDS |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | tig0040550:+10096 | None:intergenic |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | tig0040550:+10192 | None:intergenic |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | tig0040550:+10288 | None:intergenic |
| ACATATAACAAACATGTTGC+TGG | 0.455549 | tig0040550:-9795 | Msa1459940:CDS |
| AGCTACACTGCACACTTGTC+CGG | 0.457647 | tig0040550:-8252 | Msa1459940:CDS |
| GACAAATTAACACTTGTCCT+TGG | 0.467410 | tig0040550:+10000 | None:intergenic |
| TTTCGCAGGCTCTGATTGTT+CGG | 0.469070 | tig0040550:+10259 | None:intergenic |
| ATCACCGTTACGCTTGAGTT+CGG | 0.470795 | tig0040550:+8362 | None:intergenic |
| AGTTTGCCTTCTGCGCGTAA+TGG | 0.472468 | tig0040550:-10695 | Msa1459940:CDS |
| CTTCTAATATTGCCGGCTGT+TGG | 0.475497 | tig0040550:-10749 | Msa1459940:CDS |
| GCTCTGATTGCTCGCGTACA+GGG | 0.481346 | tig0040550:+10429 | None:intergenic |
| GCCGGCAATATTAGAAGCAT+TGG | 0.481716 | tig0040550:+10755 | None:intergenic |
| TTGCTGACTTTGGTTTGGTT+AGG | 0.492552 | tig0040550:+10626 | None:intergenic |
| CCGCAATAGGCACTTCAATT+GGG | 0.497753 | tig0040550:-8152 | Msa1459940:CDS |
| TATTGCGGTGGTGGTGGTAG+TGG | 0.498143 | tig0040550:+8167 | None:intergenic |
| CGCTTGAGTTCGGCAACAGA+TGG | 0.499244 | tig0040550:+8372 | None:intergenic |
| AGTTTGCCTTCTGTTCAGAA+TGG | 0.514605 | tig0040550:-10869 | Msa1459940:CDS |
| CATATAACAAACATGTTGCT+GGG | 0.516681 | tig0040550:-9794 | Msa1459940:CDS |
| AGGCACTTCAATTGGGCCAC+AGG | 0.517728 | tig0040550:-8145 | Msa1459940:CDS |
| TGAAGTGCCTATTGCGGTGG+TGG | 0.518303 | tig0040550:+8158 | None:intergenic |
| ACAAAATCAACCTGTTTCGC+AGG | 0.519194 | tig0040550:+10245 | None:intergenic |
| ATACAAGGACAAGCGTTGAT+TGG | 0.519587 | tig0040550:-10386 | Msa1459940:CDS |
| CAGCATGATTATGGTCACTA+AGG | 0.520547 | tig0040550:+7962 | None:intergenic |
| TCATGCTGCTATGGTGAAGA+AGG | 0.523999 | tig0040550:-7947 | Msa1459940:CDS |
| GGCATACCATTCTGCGCAGA+AGG | 0.536308 | tig0040550:+10776 | None:intergenic |
| GCTGCTATGGTGAAGAAGGC+AGG | 0.537781 | tig0040550:-7943 | Msa1459940:CDS |
| CCAAAAGTCGGTGTTGGCAG+CGG | 0.544449 | tig0040550:-8192 | Msa1459940:CDS |
| CTTCTAATATTGCAGGCTGT+CGG | 0.548494 | tig0040550:-10923 | Msa1459940:CDS |
| AAAAGCTGCTAAGAAAATCA+AGG | 0.554241 | tig0040550:-8328 | Msa1459940:CDS |
| TGGGAGAAAGCATGCTGCTA+AGG | 0.554649 | tig0040550:-9775 | Msa1459940:intron |
| TCAAGGTTGCTGAATCTGTA+TGG | 0.557151 | tig0040550:-8311 | Msa1459940:CDS |
| AAACGTAAAGCTGTGGAAAG+AGG | 0.559914 | tig0040550:-8060 | Msa1459940:CDS |
| ATGCAGTATGTCATTGCTAT+CGG | 0.563604 | tig0040550:-7849 | Msa1459940:three_prime_UTR |
| GTCATTGTGTCATCTAGACT+TGG | 0.565209 | tig0040550:-7894 | Msa1459940:three_prime_UTR |
| ACAGAATCAACCTGTTTCGT+AGG | 0.566760 | tig0040550:+10053 | None:intergenic |
| AAGAAGGCAGGGTTAATCAC+TGG | 0.566902 | tig0040550:-7931 | Msa1459940:CDS |
| TGACCATAATCATGCTGCTA+TGG | 0.569530 | tig0040550:-7956 | Msa1459940:CDS |
| GGAATACCATTCTGAACAGA+AGG | 0.573481 | tig0040550:+10863 | None:intergenic |
| AGTGCCTATTGCGGTGGTGG+TGG | 0.576879 | tig0040550:+8161 | None:intergenic |
| AGTTTGCCTTCTGCGCAGAA+TGG | 0.578105 | tig0040550:-10782 | Msa1459940:CDS |
| GTGTCATCTAGACTTGGAGT+TGG | 0.579578 | tig0040550:-7888 | Msa1459940:three_prime_UTR |
| TGGTGTGACGAACCAACAGC+CGG | 0.583490 | tig0040550:+10737 | None:intergenic |
| CAATGTGGTGTGTAATAGCC+AGG | 0.584891 | tig0040550:-8001 | Msa1459940:CDS |
| AAACAGGTTGATAGTATACA+AGG | 0.585879 | tig0040550:-10401 | Msa1459940:CDS |
| TCAGATCCAAAAGTCGGTGT+TGG | 0.587240 | tig0040550:-8198 | Msa1459940:CDS |
| CAGGAACCATTACGCGCAGA+AGG | 0.591477 | tig0040550:+10689 | None:intergenic |
| GTTGCCTTGAAGTCTAATGA+TGG | 0.591860 | tig0040550:-8402 | Msa1459940:CDS |
| GCAGGGTTAATCACTGGTTG+AGG | 0.595222 | tig0040550:-7925 | Msa1459940:exon |
| CTGCTATGGTGAAGAAGGCA+GGG | 0.602051 | tig0040550:-7942 | Msa1459940:CDS |
| GACAGAGAAACGTAAAGCTG+TGG | 0.602727 | tig0040550:-8067 | Msa1459940:CDS |
| TTGAAGTCTAATGATGGCAT+TGG | 0.606462 | tig0040550:-8396 | Msa1459940:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | tig0040550:-10017 | Msa1459940:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | tig0040550:-10209 | Msa1459940:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | tig0040550:-10305 | Msa1459940:CDS |
| TTGCAGGCGCTGCTGAAGTG+TGG | 0.623480 | tig0040550:+10717 | None:intergenic |
| ACGTGCAATGTTGTATGCGT+TGG | 0.626948 | tig0040550:-9825 | Msa1459940:CDS |
| TTCAGATAAACCGAAAACAA+AGG | 0.627362 | tig0040550:-8112 | Msa1459940:CDS |
| CCCAATTGAAGTGCCTATTG+CGG | 0.632472 | tig0040550:+8152 | None:intergenic |
| ACTGACACAAGTAATATCCA+AGG | 0.644465 | tig0040550:-10113 | Msa1459940:CDS |
| AAACTGTCAGATCCAAAAGT+CGG | 0.650475 | tig0040550:-8204 | Msa1459940:CDS |
| TAAGAAACACTTGAAGAACA+TGG | 0.658000 | tig0040550:-8229 | Msa1459940:CDS |
| AATTGAAGTGCCTATTGCGG+TGG | 0.664606 | tig0040550:+8155 | None:intergenic |
| GTTGCCGAACTCAAGCGTAA+CGG | 0.668233 | tig0040550:-8366 | Msa1459940:CDS |
| ACTGACACAAGTAGTATCCA+CGG | 0.668670 | tig0040550:-10467 | Msa1459940:CDS |
| GGCCAATTAACGCTTGACCG+TGG | 0.678744 | tig0040550:+10450 | None:intergenic |
| AGATAAACCGAAAACAAAGG+AGG | 0.682827 | tig0040550:-8109 | Msa1459940:CDS |
| AACACAAGAAGAATTTGCAG+CGG | 0.684214 | tig0040550:-10529 | Msa1459940:CDS |
| ATTGTGCACTTTATGCAATG+TGG | 0.685678 | tig0040550:-8016 | Msa1459940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTTTATTTATTTTGC+TGG | - | tig0040550:9786-9805 | Msa1459940:CDS | 15.0% |
| !! | TTCAAAGATTATATATAGTT+TGG | + | tig0040550:9875-9894 | None:intergenic | 15.0% |
| !!! | ATGTAAAAAATATAGTCTTT+TGG | - | tig0040550:9963-9982 | Msa1459940:CDS | 15.0% |
| !! | AAAAAATATTTGATTGTTCA+AGG | + | tig0040550:10105-10124 | None:intergenic | 15.0% |
| !! | GTAAAAGTAATCATTAACTA+CGG | + | tig0040550:9041-9060 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCATGTAAGACA+TGG | + | tig0040550:9123-9142 | None:intergenic | 20.0% |
| !!! | TGAATATTTTGTATAACTGT+GGG | - | tig0040550:9283-9302 | Msa1459940:intron | 20.0% |
| ! | ATTCAAAGACAAGCATTAAT+TGG | - | tig0040550:8821-8840 | Msa1459940:intron | 25.0% |
| !! | GGACAAAATTTTATCTTGAT+TGG | - | tig0040550:9171-9190 | Msa1459940:intron | 25.0% |
| !! | GTGAATATTTTGTATAACTG+TGG | - | tig0040550:9282-9301 | Msa1459940:intron | 25.0% |
| !!! | ATGTAGCTTTTGAAAAATCA+CGG | + | tig0040550:9332-9351 | None:intergenic | 25.0% |
| ! | GTATGAAAATAAGAGAATCT+TGG | + | tig0040550:9388-9407 | None:intergenic | 25.0% |
| ! | ATGAGTTTAATGTTGTGTTT+CGG | - | tig0040550:9541-9560 | Msa1459940:intron | 25.0% |
| !! | TGAACTGTAAGAAAAGTATA+AGG | - | tig0040550:10249-10268 | Msa1459940:CDS | 25.0% |
| ! | ACTCAGAAACATTTCATAAA+TGG | + | tig0040550:10282-10301 | None:intergenic | 25.0% |
| ! | ATACTATCAACCTGTTTCTT+AGG | + | tig0040550:8323-8342 | None:intergenic | 30.0% |
| !! | AAACAGGTTGATAGTATACA+AGG | - | tig0040550:8326-8345 | Msa1459940:CDS | 30.0% |
| ACATATAACAAACATGTTGC+TGG | - | tig0040550:8932-8951 | Msa1459940:intron | 30.0% | |
| CATATAACAAACATGTTGCT+GGG | - | tig0040550:8933-8952 | Msa1459940:intron | 30.0% | |
| ATAACAGTGTTGCATACAAA+AGG | + | tig0040550:8992-9011 | None:intergenic | 30.0% | |
| GACAGAACAAGAACATTAAA+AGG | - | tig0040550:9150-9169 | Msa1459940:intron | 30.0% | |
| !!! | TTACATGCATTTTAGCTGAA+TGG | + | tig0040550:9249-9268 | None:intergenic | 30.0% |
| ATTCAGCTAAAATGCATGTA+AGG | - | tig0040550:9248-9267 | Msa1459940:intron | 30.0% | |
| GAAAATAAGAGAATCTTGGT+GGG | + | tig0040550:9384-9403 | None:intergenic | 30.0% | |
| TGAAAATAAGAGAATCTTGG+TGG | + | tig0040550:9385-9404 | None:intergenic | 30.0% | |
| !! | GTATTCTAGTTCAAACTAGT+TGG | - | tig0040550:9414-9433 | Msa1459940:intron | 30.0% |
| GTAAGGAAAAAATCGTTGTT+CGG | - | tig0040550:9469-9488 | Msa1459940:intron | 30.0% | |
| TAAGGAAAAAATCGTTGTTC+GGG | - | tig0040550:9470-9489 | Msa1459940:intron | 30.0% | |
| ! | AATAGTCTTTTTCCACTAGA+AGG | - | tig0040550:9724-9743 | Msa1459940:intron | 30.0% |
| AGATTATATATAGTTTGGCC+TGG | + | tig0040550:9870-9889 | None:intergenic | 30.0% | |
| AACCTAATATATGACCATAC+AGG | - | tig0040550:10012-10031 | Msa1459940:CDS | 30.0% | |
| TTCCTGTATGGTCATATATT+AGG | + | tig0040550:10017-10036 | None:intergenic | 30.0% | |
| AAAACTAGTGTTGTCAATTG+TGG | + | tig0040550:10132-10151 | None:intergenic | 30.0% | |
| CTATCTATAGATATACATCC+AGG | + | tig0040550:10195-10214 | None:intergenic | 30.0% | |
| ! | TGTAAGAAAAGTATAAGGCA+GGG | - | tig0040550:10254-10273 | Msa1459940:CDS | 30.0% |
| AAAAGCTGCTAAGAAAATCA+AGG | - | tig0040550:10399-10418 | Msa1459940:CDS | 30.0% | |
| TAAGAAACACTTGAAGAACA+TGG | - | tig0040550:10498-10517 | Msa1459940:CDS | 30.0% | |
| TTCAGATAAACCGAAAACAA+AGG | - | tig0040550:10615-10634 | Msa1459940:CDS | 30.0% | |
| GGTGATTATTTAAATTTGCC+TGG | + | tig0040550:10747-10766 | None:intergenic | 30.0% | |
| GACTGCAAAATTACAAGCAT+TGG | + | tig0040550:7888-7907 | None:intergenic | 35.0% | |
| TCCTGGCAACTTCAAATTTA+TGG | - | tig0040550:8056-8075 | Msa1459940:CDS | 35.0% | |
| ! | TGTGCTTTTCAAAAGAGACT+TGG | + | tig0040550:8166-8185 | None:intergenic | 35.0% |
| !! | TCTTTTGAAAAGCACATTGC+TGG | - | tig0040550:8170-8189 | Msa1459940:CDS | 35.0% |
| AACACAAGAAGAATTTGCAG+CGG | - | tig0040550:8198-8217 | Msa1459940:CDS | 35.0% | |
| ! | TTTCTTAGGCTCTGATTGTT+CGG | + | tig0040550:8375-8394 | None:intergenic | 35.0% |
| ! | ACAGAATCAACCTGTTTCTT+AGG | + | tig0040550:8389-8408 | None:intergenic | 35.0% |
| ! | ACAGAATCAACCTGTTTCTT+AGG | + | tig0040550:8389-8408 | None:intergenic | 35.0% |
| ACTGACACAAGTAATATCCA+AGG | - | tig0040550:8614-8633 | Msa1459940:intron | 35.0% | |
| GACAAATTAACACTTGTCCT+TGG | + | tig0040550:8730-8749 | None:intergenic | 35.0% | |
| ! | TTTCTTAGGCTCTGATTGTT+CGG | + | tig0040550:8375-8394 | None:intergenic | 35.0% |
| ! | ACAGAATCAACCTGTTTCTT+AGG | + | tig0040550:8389-8408 | None:intergenic | 35.0% |
| ! | ACAGAATCAACCTGTTTCTT+AGG | + | tig0040550:8389-8408 | None:intergenic | 35.0% |
| !! | GAAACAGGTTGATTCTGTTA+AGG | - | tig0040550:8391-8410 | Msa1459940:CDS | 35.0% |
| TACGGTGTAGAATGAGAAAA+CGG | + | tig0040550:9023-9042 | None:intergenic | 35.0% | |
| !! | GTTTAGCTAATTAGCTCTGT+AGG | - | tig0040550:9223-9242 | Msa1459940:intron | 35.0% |
| AGTGCTTTGCAAAATCATAG+TGG | - | tig0040550:9352-9371 | Msa1459940:intron | 35.0% | |
| GGAAAAAGTAACTGGAAGTA+AGG | - | tig0040550:9452-9471 | Msa1459940:intron | 35.0% | |
| !!! | ATAAGTGGGAAGGTTTTTTG+AGG | - | tig0040550:9510-9529 | Msa1459940:intron | 35.0% |
| GCTAGGTTCTACTGAAATTA+GGG | + | tig0040550:9631-9650 | None:intergenic | 35.0% | |
| AGCTAGGTTCTACTGAAATT+AGG | + | tig0040550:9632-9651 | None:intergenic | 35.0% | |
| AATACCTCTGTAGTTAACAG+AGG | + | tig0040550:9695-9714 | None:intergenic | 35.0% | |
| GAGTTCTATCATTTCCTGTA+TGG | + | tig0040550:10029-10048 | None:intergenic | 35.0% | |
| !! | TTGTTTGCTATCAGTTATCC+TGG | - | tig0040550:10174-10193 | Msa1459940:CDS | 35.0% |
| ! | CTGTAAGAAAAGTATAAGGC+AGG | - | tig0040550:10253-10272 | Msa1459940:CDS | 35.0% |
| AACCTATGAGTCACAAAAAG+TGG | + | tig0040550:10308-10327 | None:intergenic | 35.0% | |
| AATGCCATCATTAGACTTCA+AGG | + | tig0040550:10332-10351 | None:intergenic | 35.0% | |
| TTGAAGTCTAATGATGGCAT+TGG | - | tig0040550:10331-10350 | Msa1459940:CDS | 35.0% | |
| GTTCTTCAAGTGTTTCTTAC+CGG | + | tig0040550:10497-10516 | None:intergenic | 35.0% | |
| AAACTGTCAGATCCAAAAGT+CGG | - | tig0040550:10523-10542 | Msa1459940:CDS | 35.0% | |
| ! | GTTTTCGGTTTATCTGAATC+TGG | + | tig0040550:10613-10632 | None:intergenic | 35.0% |
| AGATAAACCGAAAACAAAGG+AGG | - | tig0040550:10618-10637 | Msa1459940:CDS | 35.0% | |
| !!! | ACTGATACCTCCTTTGTTTT+CGG | + | tig0040550:10628-10647 | None:intergenic | 35.0% |
| ATTGTGCACTTTATGCAATG+TGG | - | tig0040550:10711-10730 | Msa1459940:CDS | 35.0% | |
| ATGCAGTATGTCATTGCTAT+CGG | - | tig0040550:10878-10897 | Msa1459940:CDS | 35.0% | |
| CTTCTAATATTGCAGGCTGT+CGG | - | tig0040550:7804-7823 | Msa1459940:three_prime_UTR | 40.0% | |
| AGTTTGCCTTCTGTTCAGAA+TGG | - | tig0040550:7858-7877 | Msa1459940:three_prime_UTR | 40.0% | |
| GGAATACCATTCTGAACAGA+AGG | + | tig0040550:7867-7886 | None:intergenic | 40.0% | |
| ! | CTTGTAATTTTGCAGTCTGC+TGG | - | tig0040550:7891-7910 | Msa1459940:three_prime_UTR | 40.0% |
| GCCAATGCTTCTAATATTGC+CGG | - | tig0040550:7971-7990 | Msa1459940:CDS | 40.0% | |
| ! | GCCATAAATTTGAAGTTGCC+AGG | + | tig0040550:8060-8079 | None:intergenic | 40.0% |
| !! | TTGCTGACTTTGGTTTGGTT+AGG | + | tig0040550:8104-8123 | None:intergenic | 40.0% |
| !! | AAGCTTTGCTGACTTTGGTT+TGG | + | tig0040550:8109-8128 | None:intergenic | 40.0% |
| !! | TCTGAAAGCTTTGCTGACTT+TGG | + | tig0040550:8114-8133 | None:intergenic | 40.0% |
| ACTGACACAAGTAGTATCCA+CGG | - | tig0040550:8260-8279 | Msa1459940:CDS | 40.0% | |
| !! | ATACAAGGACAAGCGTTGAT+TGG | - | tig0040550:8341-8360 | Msa1459940:CDS | 40.0% |
| ACAATCAGAGCCTAAGAAAC+AGG | - | tig0040550:8376-8395 | Msa1459940:CDS | 40.0% | |
| ACTGACACAAGTAGTATCCA+AGG | - | tig0040550:8260-8279 | Msa1459940:CDS | 40.0% | |
| ATCCAAGGACAAGCGTTAAT+TGG | - | tig0040550:8437-8456 | Msa1459940:intron | 40.0% | |
| ACAAAATCAACCTGTTTCGC+AGG | + | tig0040550:8485-8504 | None:intergenic | 40.0% | |
| ACTGACACAAGTAGTATCCA+AGG | - | tig0040550:8260-8279 | Msa1459940:CDS | 40.0% | |
| ATCCAAGGACAAGCGTTAAT+TGG | - | tig0040550:8437-8456 | Msa1459940:intron | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | - | tig0040550:8376-8395 | Msa1459940:CDS | 40.0% | |
| ATCCAAGGACAAGCGTTAAT+TGG | - | tig0040550:8437-8456 | Msa1459940:intron | 40.0% | |
| ! | TTTCGTAGGCTCTGATTGTT+CGG | + | tig0040550:8663-8682 | None:intergenic | 40.0% |
| ACAGAATCAACCTGTTTCGT+AGG | + | tig0040550:8677-8696 | None:intergenic | 40.0% | |
| ACTGACACAAGTAGTATCCA+AGG | - | tig0040550:8260-8279 | Msa1459940:CDS | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | - | tig0040550:8376-8395 | Msa1459940:CDS | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | - | tig0040550:8376-8395 | Msa1459940:CDS | 40.0% | |
| TTGGACACACAAGACAAGAT+AGG | - | tig0040550:9190-9209 | Msa1459940:intron | 40.0% | |
| AAGACAAGATAGGATCACTG+TGG | - | tig0040550:9200-9219 | Msa1459940:intron | 40.0% | |
| AGACAAGATAGGATCACTGT+GGG | - | tig0040550:9201-9220 | Msa1459940:intron | 40.0% | |
| !!! | TTCCAGTTACTTTTTCCCAG+TGG | + | tig0040550:9449-9468 | None:intergenic | 40.0% |
| ATGTAGACAGCAGCAATAAG+TGG | - | tig0040550:9495-9514 | Msa1459940:intron | 40.0% | |
| TGTAGACAGCAGCAATAAGT+GGG | - | tig0040550:9496-9515 | Msa1459940:intron | 40.0% | |
| TCGTTTCATGGTCAAATTGC+AGG | + | tig0040550:9576-9595 | None:intergenic | 40.0% | |
| ACGTCATCAAATCCTTCTAG+TGG | + | tig0040550:9739-9758 | None:intergenic | 40.0% | |
| ! | CTCGTTAATTTTGTAGTGCC+AGG | - | tig0040550:9849-9868 | Msa1459940:CDS | 40.0% |
| !!! | GACCACTTTTTGTGACTCAT+AGG | - | tig0040550:10303-10322 | Msa1459940:CDS | 40.0% |
| GTTGCCTTGAAGTCTAATGA+TGG | - | tig0040550:10325-10344 | Msa1459940:CDS | 40.0% | |
| TCAAGGTTGCTGAATCTGTA+TGG | - | tig0040550:10416-10435 | Msa1459940:CDS | 40.0% | |
| AAACGTAAAGCTGTGGAAAG+AGG | - | tig0040550:10667-10686 | Msa1459940:CDS | 40.0% | |
| CAGCATGATTATGGTCACTA+AGG | + | tig0040550:10768-10787 | None:intergenic | 40.0% | |
| TGACCATAATCATGCTGCTA+TGG | - | tig0040550:10771-10790 | Msa1459940:CDS | 40.0% | |
| TCACCATAGCAGCATGATTA+TGG | + | tig0040550:10777-10796 | None:intergenic | 40.0% | |
| GTCATTGTGTCATCTAGACT+TGG | - | tig0040550:10833-10852 | Msa1459940:CDS | 40.0% | |
| TGAACAGAAGGCAAACTTGC+AGG | + | tig0040550:7855-7874 | None:intergenic | 45.0% | |
| ! | GCCGGCAATATTAGAAGCAT+TGG | + | tig0040550:7975-7994 | None:intergenic | 45.0% |
| ! | CTTCTAATATTGCCGGCTGT+TGG | - | tig0040550:7978-7997 | Msa1459940:CDS | 45.0% |
| ATCCACGGTCAAGCGTTAAT+TGG | - | tig0040550:8275-8294 | Msa1459940:CDS | 45.0% | |
| GCAATCAGAGCCTAAGAAAC+AGG | - | tig0040550:8310-8329 | Msa1459940:CDS | 45.0% | |
| GACCAATTAACGCTTGTCCT+TGG | + | tig0040550:8442-8461 | None:intergenic | 45.0% | |
| ! | TTTCGCAGGCTCTGATTGTT+CGG | + | tig0040550:8471-8490 | None:intergenic | 45.0% |
| GACCAATTAACGCTTGTCCT+TGG | + | tig0040550:8442-8461 | None:intergenic | 45.0% | |
| GACCAATTAACGCTTGTCCT+TGG | + | tig0040550:8442-8461 | None:intergenic | 45.0% | |
| ACAATCAGAGCCTACGAAAC+AGG | - | tig0040550:8664-8683 | Msa1459940:intron | 45.0% | |
| ACGTGCAATGTTGTATGCGT+TGG | - | tig0040550:8902-8921 | Msa1459940:intron | 45.0% | |
| CCACTAGTGTGCATTATGTG+TGG | + | tig0040550:9071-9090 | None:intergenic | 45.0% | |
| CCACACATAATGCACACTAG+TGG | - | tig0040550:9068-9087 | Msa1459940:intron | 45.0% | |
| GTCCACTGGGAAAAAGTAAC+TGG | - | tig0040550:9444-9463 | Msa1459940:intron | 45.0% | |
| TCAGCGTTACAGTCGTTTCA+TGG | + | tig0040550:9588-9607 | None:intergenic | 45.0% | |
| AATACTGTGCCATGACGTAG+CGG | + | tig0040550:9656-9675 | None:intergenic | 45.0% | |
| TCTGTAGTTAACAGAGGCTG+TGG | + | tig0040550:9689-9708 | None:intergenic | 45.0% | |
| ACAGCCTCTGTTAACTACAG+AGG | - | tig0040550:9688-9707 | Msa1459940:intron | 45.0% | |
| ATCACCGTTACGCTTGAGTT+CGG | + | tig0040550:10368-10387 | None:intergenic | 45.0% | |
| TCAGATCCAAAAGTCGGTGT+TGG | - | tig0040550:10529-10548 | Msa1459940:CDS | 45.0% | |
| ! | AATTGAAGTGCCTATTGCGG+TGG | + | tig0040550:10575-10594 | None:intergenic | 45.0% |
| ACCGCAATAGGCACTTCAAT+TGG | - | tig0040550:10574-10593 | Msa1459940:CDS | 45.0% | |
| ! | CCCAATTGAAGTGCCTATTG+CGG | + | tig0040550:10578-10597 | None:intergenic | 45.0% |
| CCGCAATAGGCACTTCAATT+GGG | - | tig0040550:10575-10594 | Msa1459940:CDS | 45.0% | |
| !!! | TCTGAATCTGGCTTTTCCTG+TGG | + | tig0040550:10601-10620 | None:intergenic | 45.0% |
| GACAGAGAAACGTAAAGCTG+TGG | - | tig0040550:10660-10679 | Msa1459940:CDS | 45.0% | |
| CAATGTGGTGTGTAATAGCC+AGG | - | tig0040550:10726-10745 | Msa1459940:CDS | 45.0% | |
| TCATGCTGCTATGGTGAAGA+AGG | - | tig0040550:10780-10799 | Msa1459940:CDS | 45.0% | |
| AAGAAGGCAGGGTTAATCAC+TGG | - | tig0040550:10796-10815 | Msa1459940:CDS | 45.0% | |
| GTGTCATCTAGACTTGGAGT+TGG | - | tig0040550:10839-10858 | Msa1459940:CDS | 45.0% | |
| AGTTTGCCTTCTGCGCAGAA+TGG | - | tig0040550:7945-7964 | Msa1459940:CDS | 50.0% | |
| AGTTTGCCTTCTGCGCGTAA+TGG | - | tig0040550:8032-8051 | Msa1459940:CDS | 50.0% | |
| ACAATCAGAGCCTGCGAAAC+AGG | - | tig0040550:8472-8491 | Msa1459940:intron | 50.0% | |
| ! | GGCTCTGATTGTTCAGCTAC+AGG | + | tig0040550:8560-8579 | None:intergenic | 50.0% |
| ! | GGCTCTGATTGTTCTGCTAC+AGG | + | tig0040550:8848-8867 | None:intergenic | 50.0% |
| ! | TGGGAGAAAGCATGCTGCTA+AGG | - | tig0040550:8952-8971 | Msa1459940:intron | 50.0% |
| ! | TAGTTGGCTTACTCGTCCAC+TGG | - | tig0040550:9430-9449 | Msa1459940:intron | 50.0% |
| ! | AGTTGGCTTACTCGTCCACT+GGG | - | tig0040550:9431-9450 | Msa1459940:intron | 50.0% |
| GACAGCAGCAATAAGTGGGA+AGG | - | tig0040550:9500-9519 | Msa1459940:intron | 50.0% | |
| GTAGTTAACAGAGGCTGTGG+CGG | + | tig0040550:9686-9705 | None:intergenic | 50.0% | |
| GTTGCCGAACTCAAGCGTAA+CGG | - | tig0040550:10361-10380 | Msa1459940:CDS | 50.0% | |
| AGCTACACTGCACACTTGTC+CGG | - | tig0040550:10475-10494 | Msa1459940:CDS | 50.0% | |
| CTGCTATGGTGAAGAAGGCA+GGG | - | tig0040550:10785-10804 | Msa1459940:CDS | 50.0% | |
| ! | GCAGGGTTAATCACTGGTTG+AGG | - | tig0040550:10802-10821 | Msa1459940:CDS | 50.0% |
| TGCGCAGAAGGCAAACTTGC+AGG | + | tig0040550:7942-7961 | None:intergenic | 55.0% | |
| GGCATACCATTCTGCGCAGA+AGG | + | tig0040550:7954-7973 | None:intergenic | 55.0% | |
| TGGTGTGACGAACCAACAGC+CGG | + | tig0040550:7993-8012 | None:intergenic | 55.0% | |
| CAGGAACCATTACGCGCAGA+AGG | + | tig0040550:8041-8060 | None:intergenic | 55.0% | |
| CTTCTGCGCGTAATGGTTCC+TGG | - | tig0040550:8039-8058 | Msa1459940:CDS | 55.0% | |
| GGCCAATTAACGCTTGACCG+TGG | + | tig0040550:8280-8299 | None:intergenic | 55.0% | |
| GCTCTGATTGCTCGCGTACA+GGG | + | tig0040550:8301-8320 | None:intergenic | 55.0% | |
| ! | GGCTCTGATTGTTCGGCTAC+AGG | + | tig0040550:8368-8387 | None:intergenic | 55.0% |
| ! | GGCTCTGATTGTTCGGCTAC+AGG | + | tig0040550:8368-8387 | None:intergenic | 55.0% |
| ! | GACTGTAACGCTGACTGCCA+CGG | - | tig0040550:9594-9613 | Msa1459940:intron | 55.0% |
| ! | ACTGTAACGCTGACTGCCAC+GGG | - | tig0040550:9595-9614 | Msa1459940:intron | 55.0% |
| ACCTAGCTACCGCTACGTCA+TGG | - | tig0040550:9644-9663 | Msa1459940:intron | 55.0% | |
| CGCTTGAGTTCGGCAACAGA+TGG | + | tig0040550:10358-10377 | None:intergenic | 55.0% | |
| !! | CCAAAAGTCGGTGTTGGCAG+CGG | - | tig0040550:10535-10554 | Msa1459940:CDS | 55.0% |
| !! | TATTGCGGTGGTGGTGGTAG+TGG | + | tig0040550:10563-10582 | None:intergenic | 55.0% |
| ACTACCACCACCACCGCAAT+AGG | - | tig0040550:10562-10581 | Msa1459940:CDS | 55.0% | |
| ! | TGAAGTGCCTATTGCGGTGG+TGG | + | tig0040550:10572-10591 | None:intergenic | 55.0% |
| AGGCACTTCAATTGGGCCAC+AGG | - | tig0040550:10582-10601 | Msa1459940:CDS | 55.0% | |
| GCTGCTATGGTGAAGAAGGC+AGG | - | tig0040550:10784-10803 | Msa1459940:CDS | 55.0% | |
| ! | TTGCAGGCGCTGCTGAAGTG+TGG | + | tig0040550:8013-8032 | None:intergenic | 60.0% |
| CGCGCAGAAGGCAAACTTGC+AGG | + | tig0040550:8029-8048 | None:intergenic | 60.0% | |
| ! | GGCTCTGATTGCTCGCGTAC+AGG | + | tig0040550:8302-8321 | None:intergenic | 60.0% |
| ! | GGCTCTGATTGTTCGGCGAC+AGG | + | tig0040550:8464-8483 | None:intergenic | 60.0% |
| ! | GGCTCTGATTGTTCGGCTGC+AGG | + | tig0040550:8752-8771 | None:intergenic | 60.0% |
| GCCATGACGTAGCGGTAGCT+AGG | + | tig0040550:9648-9667 | None:intergenic | 60.0% | |
| !!! | CCGCTGCCAACACCGACTTT+TGG | + | tig0040550:10538-10557 | None:intergenic | 60.0% |
| ! | AGTGCCTATTGCGGTGGTGG+TGG | + | tig0040550:10569-10588 | None:intergenic | 60.0% |
| TTAGGGCAGCGTAGCGCCCG+TGG | + | tig0040550:9614-9633 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040550 | gene | 7801 | 10948 | 7801 | ID=Msa1459940;Name=Msa1459940 |
| tig0040550 | mRNA | 7801 | 10948 | 7801 | ID=Msa1459940-mRNA-1;Parent=Msa1459940;Name=Msa1459940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|126|556 |
| tig0040550 | exon | 7801 | 8424 | 7801 | ID=Msa1459940-mRNA-1:exon:22487;Parent=Msa1459940-mRNA-1 |
| tig0040550 | exon | 9776 | 10948 | 9776 | ID=Msa1459940-mRNA-1:exon:22486;Parent=Msa1459940-mRNA-1 |
| tig0040550 | CDS | 9776 | 10948 | 9776 | ID=Msa1459940-mRNA-1:cds;Parent=Msa1459940-mRNA-1 |
| tig0040550 | CDS | 7927 | 8424 | 7927 | ID=Msa1459940-mRNA-1:cds;Parent=Msa1459940-mRNA-1 |
| tig0040550 | three_prime_UTR | 7801 | 7926 | 7801 | ID=Msa1459940-mRNA-1:three_prime_utr;Parent=Msa1459940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
