AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1460260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460260 MtrunA17_Chr8g0387671 68.421 152 19 2 47 169 220 371 3.62e-61 197
Msa1460260 MtrunA17_Chr8g0387671 97.222 36 1 0 1 36 1 36 1.23e-18 82.0
Msa1460260 MtrunA17_Chr5g0397101 64.901 151 25 2 47 169 221 371 2.19e-57 187
Msa1460260 MtrunA17_Chr5g0444171 58.741 143 30 2 54 167 253 395 2.61e-48 164
Msa1460260 MtrunA17_Chr3g0098951 57.042 142 33 2 54 167 245 386 1.32e-46 159
Msa1460260 MtrunA17_Chr0c02g0489761 53.793 145 38 2 54 169 239 383 7.80e-46 157
Msa1460260 MtrunA17_Chr5g0441691 53.793 145 38 2 54 169 229 373 1.14e-45 156
Msa1460260 MtrunA17_Chr4g0074811 56.643 143 33 2 54 167 252 394 1.69e-45 156
Msa1460260 MtrunA17_Chr1g0157131 57.971 138 29 2 54 162 235 372 5.45e-45 154
Msa1460260 MtrunA17_Chr1g0170281 52.980 151 42 2 46 167 271 421 5.22e-44 152
Msa1460260 MtrunA17_Chr1g0176421 52.000 150 43 2 47 167 315 464 8.88e-44 152
Msa1460260 MtrunA17_Chr5g0448721 51.333 150 44 3 47 167 250 399 2.42e-43 150
Msa1460260 MtrunA17_Chr7g0257751 53.103 145 39 3 47 162 212 356 8.14e-43 149
Msa1460260 MtrunA17_Chr1g0176751 52.667 150 42 2 47 167 278 427 1.31e-42 149
Msa1460260 MtrunA17_Chr1g0200601 53.333 150 41 3 47 167 184 333 3.10e-42 147
Msa1460260 MtrunA17_Chr3g0131181 50.000 150 46 3 47 167 183 332 3.41e-41 144
Msa1460260 MtrunA17_Chr1g0173541 51.034 145 42 3 47 162 206 350 3.56e-41 144
Msa1460260 MtrunA17_Chr8g0385341 50.658 152 42 3 47 167 184 333 9.70e-41 143
Msa1460260 MtrunA17_Chr7g0267751 50.000 150 46 2 47 167 289 438 1.54e-40 144
Msa1460260 MtrunA17_Chr5g0444191 68.478 92 25 1 54 141 69 160 5.23e-39 132
Msa1460260 MtrunA17_Chr4g0059951 49.655 145 44 3 47 162 227 371 2.19e-38 137
Msa1460260 MtrunA17_Chr7g0242561 48.966 145 45 3 47 162 210 354 6.81e-38 135
Msa1460260 MtrunA17_Chr4g0033371 47.101 138 44 3 54 162 233 370 4.85e-35 128
Msa1460260 MtrunA17_Chr7g0267771 61.224 98 34 1 47 140 242 339 7.18e-35 127
Msa1460260 MtrunA17_Chr4g0074791 50.000 138 40 2 54 162 257 394 1.40e-33 124
Msa1460260 MtrunA17_Chr5g0405421 52.041 98 43 1 47 140 255 352 7.43e-30 114
Msa1460260 MtrunA17_Chr4g0045261 48.000 125 57 3 47 164 295 418 2.21e-29 112
Msa1460260 MtrunA17_Chr7g0256001 52.041 98 43 1 47 140 299 396 1.70e-28 110
Msa1460260 MtrunA17_Chr3g0127571 52.041 98 43 1 47 140 296 393 3.59e-28 109
Msa1460260 MtrunA17_Chr7g0276111 51.020 98 44 1 47 140 302 399 5.98e-27 105
Msa1460260 MtrunA17_Chr1g0203881 43.939 132 60 3 21 140 163 292 1.66e-26 104
Msa1460260 MtrunA17_Chr8g0374701 47.959 98 47 1 47 140 286 383 2.88e-26 103
Msa1460260 MtrunA17_Chr5g0402551 50.000 94 43 1 51 140 296 389 5.53e-25 100
Msa1460260 MtrunA17_Chr1g0190131 47.778 90 42 2 54 138 166 255 3.41e-22 90.1
Msa1460260 MtrunA17_Chr3g0132591 46.154 91 45 1 54 140 263 353 2.97e-18 80.9
Msa1460260 MtrunA17_Chr8g0355131 41.304 92 49 2 54 140 208 299 3.19e-13 66.6
Msa1460260 MtrunA17_Chr4g0069301 36.190 105 57 4 42 140 174 274 1.86e-12 64.3
Msa1460260 MtrunA17_Chr6g0478601 39.785 93 42 4 55 138 301 388 9.58e-12 62.4
Msa1460260 MtrunA17_Chr2g0304111 34.043 141 70 8 19 142 142 276 1.38e-11 61.6
Msa1460260 MtrunA17_Chr5g0428981 36.036 111 65 3 54 159 951 1060 3.53e-11 60.8
Msa1460260 MtrunA17_Chr3g0135951 42.353 85 36 4 55 130 302 382 3.70e-11 60.5
Msa1460260 MtrunA17_Chr4g0018201 36.036 111 65 3 54 159 947 1056 6.95e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460260 AT4G23650.1 53.947 152 41 2 47 169 232 383 2.62e-49 166
Msa1460260 AT3G20410.2 62.319 138 23 2 54 162 252 389 1.69e-48 164
Msa1460260 AT3G20410.1 62.319 138 23 2 54 162 252 389 1.69e-48 164
Msa1460260 AT1G50700.2 60.870 138 25 2 54 162 234 371 2.56e-47 161
Msa1460260 AT1G50700.1 60.870 138 25 2 54 162 234 371 3.18e-47 160
Msa1460260 AT1G50700.3 60.870 138 25 2 54 162 234 371 5.13e-47 159
Msa1460260 AT4G04720.2 57.042 142 33 2 54 167 241 382 7.80e-46 157
Msa1460260 AT4G04720.1 57.042 142 33 2 54 167 241 382 7.80e-46 157
Msa1460260 AT4G21940.3 57.042 142 33 2 54 167 263 404 1.94e-45 155
Msa1460260 AT4G21940.1 57.042 142 33 2 54 167 263 404 4.62e-45 155
Msa1460260 AT4G21940.2 57.042 142 33 2 54 167 263 404 6.66e-45 155
Msa1460260 AT2G17290.1 52.667 150 42 3 47 167 239 388 2.76e-44 153
Msa1460260 AT2G17290.2 52.667 150 42 3 47 167 239 388 2.76e-44 153
Msa1460260 AT5G12180.1 50.000 152 47 2 47 169 227 378 8.98e-44 152
Msa1460260 AT5G04870.1 52.667 150 42 3 47 167 304 453 4.16e-43 151
Msa1460260 AT1G76040.2 54.225 142 37 3 54 167 273 414 7.31e-43 150
Msa1460260 AT1G76040.1 54.225 142 37 3 54 167 35 176 7.78e-43 145
Msa1460260 AT1G76040.4 54.225 142 37 3 54 167 35 176 7.78e-43 145
Msa1460260 AT4G35310.2 52.667 150 42 3 47 167 251 400 8.93e-43 149
Msa1460260 AT4G35310.1 52.667 150 42 3 47 167 251 400 8.93e-43 149
Msa1460260 AT5G19450.2 53.103 145 39 3 47 162 211 355 1.15e-42 149
Msa1460260 AT5G19450.1 53.103 145 39 3 47 162 211 355 1.15e-42 149
Msa1460260 AT5G12480.1 52.414 145 40 3 47 162 213 357 1.39e-42 149
Msa1460260 AT4G38230.2 50.667 150 45 3 47 167 208 357 2.08e-42 148
Msa1460260 AT1G76040.3 46.448 183 60 5 21 167 234 414 8.94e-42 146
Msa1460260 AT4G38230.1 50.667 150 45 3 47 167 34 183 9.76e-42 142
Msa1460260 AT1G61950.1 52.448 143 39 2 54 167 260 402 1.10e-41 146
Msa1460260 AT5G12480.2 52.414 145 40 3 47 162 119 263 1.32e-41 144
Msa1460260 AT3G10660.2 51.333 150 44 2 47 167 340 489 1.88e-41 147
Msa1460260 AT3G10660.1 51.333 150 44 2 47 167 340 489 1.88e-41 147
Msa1460260 AT3G57530.1 51.034 145 42 3 47 162 217 361 3.51e-41 145
Msa1460260 AT2G38910.1 49.333 150 47 2 47 167 288 437 4.76e-41 145
Msa1460260 AT5G19360.1 48.026 152 50 2 47 169 222 373 5.99e-41 144
Msa1460260 AT4G38230.4 50.667 150 45 3 47 167 178 327 7.60e-41 143
Msa1460260 AT4G38230.3 50.667 150 45 3 47 167 178 327 7.60e-41 143
Msa1460260 AT3G57530.2 45.000 180 58 5 21 162 185 361 1.16e-40 142
Msa1460260 AT2G41860.1 52.414 145 40 4 47 162 208 352 1.26e-40 143
Msa1460260 AT2G41860.2 52.414 145 40 4 47 162 208 352 1.73e-40 143
Msa1460260 AT4G04740.4 54.225 142 37 3 54 167 230 371 3.30e-40 142
Msa1460260 AT4G04740.6 54.225 142 37 3 54 167 230 371 3.30e-40 142
Msa1460260 AT4G04740.5 54.225 142 37 3 54 167 230 371 3.30e-40 142
Msa1460260 AT4G04740.3 54.225 142 37 3 54 167 230 371 3.30e-40 142
Msa1460260 AT4G04740.1 54.225 142 37 3 54 167 230 371 3.30e-40 142
Msa1460260 AT4G04740.7 54.225 142 37 3 54 167 230 371 3.30e-40 142
Msa1460260 AT1G35670.1 50.667 150 45 2 47 167 180 329 4.31e-40 141
Msa1460260 AT4G09570.1 51.333 150 44 2 47 167 179 328 5.06e-40 141
Msa1460260 AT5G23580.1 50.000 150 46 3 47 167 176 325 6.64e-40 140
Msa1460260 AT4G04740.2 54.225 142 37 3 54 167 230 371 7.79e-40 141
Msa1460260 AT3G51850.3 38.942 208 76 6 3 162 148 352 3.78e-38 135
Msa1460260 AT3G51850.1 48.276 145 46 4 47 162 208 352 5.76e-38 136
Msa1460260 AT3G51850.2 38.942 208 76 6 3 162 148 352 1.04e-37 135
Msa1460260 AT1G74740.1 49.655 145 44 4 47 162 213 357 1.51e-37 135
Msa1460260 AT2G31500.1 44.079 152 56 3 47 169 220 371 3.09e-36 132
Msa1460260 AT1G18890.1 47.586 145 47 4 47 162 217 361 5.15e-35 128
Msa1460260 AT2G35890.2 43.333 150 56 3 47 167 286 435 2.81e-34 126
Msa1460260 AT2G35890.1 43.333 150 56 3 47 167 286 435 2.81e-34 126
Msa1460260 AT4G04710.1 49.342 152 43 4 50 167 197 348 3.71e-33 122
Msa1460260 AT4G04710.4 49.342 152 43 4 50 167 197 348 3.74e-33 122
Msa1460260 AT4G04710.2 51.408 142 42 4 50 167 197 335 7.57e-33 122
Msa1460260 AT4G04710.3 51.408 142 42 4 50 167 183 321 8.25e-33 121
Msa1460260 AT5G66210.1 52.041 98 43 1 47 140 218 315 1.19e-28 110
Msa1460260 AT5G66210.2 52.041 98 43 1 47 140 218 315 1.19e-28 110
Msa1460260 AT4G04695.1 46.479 142 48 2 54 167 193 334 1.40e-28 110
Msa1460260 AT4G36070.2 50.000 98 45 1 47 140 227 324 3.21e-28 109
Msa1460260 AT2G17890.1 52.041 98 43 1 47 140 264 361 3.92e-28 109
Msa1460260 AT4G36070.1 50.000 98 45 1 47 140 227 324 4.65e-28 109
Msa1460260 AT5G66210.6 52.041 98 43 1 47 140 218 315 4.98e-28 108
Msa1460260 AT5G66210.4 52.041 98 43 1 47 140 218 315 4.98e-28 108
Msa1460260 AT2G46700.2 53.061 98 42 1 47 140 120 217 5.66e-28 107
Msa1460260 AT2G46700.3 53.061 98 42 1 47 140 120 217 5.66e-28 107
Msa1460260 AT5G66210.5 52.041 98 43 1 47 140 218 315 6.22e-28 108
Msa1460260 AT5G66210.3 52.041 98 43 1 47 140 218 315 6.22e-28 108
Msa1460260 AT2G46700.1 53.061 98 42 1 47 140 301 398 1.01e-27 108
Msa1460260 AT1G49580.1 40.397 151 61 3 47 168 308 458 1.33e-27 108
Msa1460260 AT3G50530.1 51.020 98 44 1 47 140 306 403 2.06e-27 107
Msa1460260 AT2G41140.1 50.000 98 45 1 47 140 281 378 3.73e-27 106
Msa1460260 AT3G56760.1 50.000 98 45 1 47 140 282 379 4.04e-27 106
Msa1460260 AT3G50530.2 52.128 94 41 1 51 140 341 434 7.97e-27 105
Msa1460260 AT3G19100.1 51.020 98 44 1 47 140 302 399 2.04e-26 104
Msa1460260 AT4G04700.1 43.662 142 52 2 54 167 193 334 2.84e-26 103
Msa1460260 AT5G24430.1 51.064 94 42 1 51 140 305 398 3.82e-25 101
Msa1460260 AT1G12580.1 50.000 98 45 1 47 140 198 295 3.89e-25 100
Msa1460260 AT3G49370.1 52.128 94 41 1 51 140 304 397 7.26e-25 100
Msa1460260 AT1G08650.2 47.778 90 42 2 54 138 175 264 1.73e-22 91.3
Msa1460260 AT1G08650.1 47.778 90 42 2 54 138 175 264 1.81e-22 91.3
Msa1460260 AT1G12680.1 47.368 95 46 1 50 140 254 348 2.12e-20 87.4
Msa1460260 AT3G04530.1 46.667 90 43 2 54 138 171 260 2.42e-20 85.5
Msa1460260 AT1G48490.3 35.878 131 65 6 43 161 999 1122 2.41e-13 67.4
Msa1460260 AT1G48490.2 35.878 131 65 6 43 161 999 1122 2.41e-13 67.4
Msa1460260 AT1G48490.1 35.878 131 65 6 43 161 999 1122 2.41e-13 67.4
Msa1460260 AT1G48490.4 35.878 131 65 6 43 161 1000 1123 2.45e-13 67.4
Msa1460260 AT1G45160.1 39.785 93 42 4 55 138 856 943 6.86e-13 66.2
Msa1460260 AT1G45160.2 39.785 93 42 4 55 138 856 943 1.09e-12 65.5
Msa1460260 AT5G39440.1 41.837 98 44 4 52 140 170 263 1.34e-11 62.4
Msa1460260 AT3G17850.1 39.785 93 42 4 55 138 1072 1159 1.73e-11 62.0
Msa1460260 AT5G62310.1 33.913 115 62 4 54 159 943 1052 9.78e-11 59.7

Find 49 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTATACATTCTGCTTTC+TGG 0.111795 tig0040779:-3151 Msa1460260:CDS
GCACTCCAAATATCAGTTTC+AGG 0.268686 tig0040779:+3181 Msa1460260:intergenic
ATGGGCCTGAAACTGATATT+TGG 0.282173 tig0040779:-3186 Msa1460260:CDS
CATCTTCTTGACCAGATCTT+TGG 0.292856 tig0040779:+2052 Msa1460260:intergenic
GCCCAGTGTGGCGGTGGGTA+AGG 0.323519 tig0040779:+4143 Msa1460260:intergenic
TGGAGGATCGGAATGGGTGG+TGG 0.362319 tig0040779:+4224 Msa1460260:intergenic
CGGTGGGTAAGGGTGGTTGA+GGG 0.365390 tig0040779:+4154 Msa1460260:intergenic
GCGGTGGGTAAGGGTGGTTG+AGG 0.375498 tig0040779:+4153 Msa1460260:intergenic
CACTTCAGGAGCAACATAAT+AGG 0.386867 tig0040779:+3222 Msa1460260:intergenic
GGTGGTAGTGGTGTTGATTC+CGG 0.392585 tig0040779:+4245 Msa1460260:intergenic
CAGAATGTATAATATAATTC+CGG 0.395457 tig0040779:+3159 Msa1460260:intergenic
GTGGGTAAGGGTGGTTGAGG+GGG 0.397641 tig0040779:+4156 Msa1460260:intergenic
TGCAGCACCGGCGCCGGCGC+CGG 0.398638 tig0040779:-4264 Msa1460260:CDS
ATCTTTGATGCTATTCTTCG+TGG 0.405805 tig0040779:-2122 Msa1460260:CDS
CCCAGTGTGGCGGTGGGTAA+GGG 0.407956 tig0040779:+4144 Msa1460260:intergenic
CCCTTACCCACCGCCACACT+GGG 0.408194 tig0040779:-4144 Msa1460260:CDS
TTGGCACTACTTGATATAGA+AGG 0.417665 tig0040779:+2071 Msa1460260:intergenic
ACCCTTACCCACCGCCACAC+TGG 0.417948 tig0040779:-4145 Msa1460260:CDS
GATACGGCCCAGTGTGGCGG+TGG 0.421904 tig0040779:+4137 Msa1460260:intergenic
GGAATGGGTGGTGGTGGTAG+TGG 0.422217 tig0040779:+4233 Msa1460260:intergenic
GTTGATTCCGGCGCCGGCGC+CGG 0.424272 tig0040779:+4257 Msa1460260:intergenic
GGCAATTGCAGCACCGGCGC+CGG 0.427407 tig0040779:-4270 Msa1460260:CDS
AAGTGCTGCGTAAAAGTTAT+GGG 0.427821 tig0040779:-3204 Msa1460260:CDS
GGGTGGAGGATCGGAATGGG+TGG 0.431448 tig0040779:+4221 Msa1460260:intergenic
TTTGGGTGGAGGATCGGAAT+GGG 0.432242 tig0040779:+4218 Msa1460260:intergenic
GCTAAAGAAAGTAGCTCTAA+AGG 0.444870 tig0040779:-1346 Msa1460260:intron
ATGTGTTTAAAGATCTTGTT+GGG 0.453610 tig0040779:-3249 Msa1460260:intron
AGGATCGGAATGGGTGGTGG+TGG 0.457404 tig0040779:+4227 Msa1460260:intergenic
TCTTTAGCTTGTTCATTGCT+CGG 0.464261 tig0040779:+1361 Msa1460260:intergenic
ATCAAGTAGTGCCAAAGATC+TGG 0.466591 tig0040779:-2063 Msa1460260:CDS
GAAGTGCTGCGTAAAAGTTA+TGG 0.469329 tig0040779:-3205 Msa1460260:CDS
GGTGGGTAAGGGTGGTTGAG+GGG 0.475374 tig0040779:+4155 Msa1460260:intergenic
ATGGGTGGCAATTGCAGCAC+CGG 0.478937 tig0040779:-4276 Msa1460260:CDS
AGTGGTGTTGATTCCGGCGC+CGG 0.485279 tig0040779:+4251 Msa1460260:intergenic
GATGTGTTTAAAGATCTTGT+TGG 0.505793 tig0040779:-3250 Msa1460260:intron
AGTGTGGCGGTGGGTAAGGG+TGG 0.547295 tig0040779:+4147 Msa1460260:intergenic
ACTTTACCTGCCAGAAGGGG+GGG 0.552603 tig0040779:+3125 Msa1460260:intergenic
GAAACTGATATTTGGAGTGC+CGG 0.553210 tig0040779:-3178 Msa1460260:CDS
GGAGACTTTACCTGCCAGAA+GGG 0.554010 tig0040779:+3121 Msa1460260:intergenic
GAGGATACGGCCCAGTGTGG+CGG 0.569351 tig0040779:+4134 Msa1460260:intergenic
GAGACTTTACCTGCCAGAAG+GGG 0.582118 tig0040779:+3122 Msa1460260:intergenic
AGACTTTACCTGCCAGAAGG+GGG 0.590086 tig0040779:+3123 Msa1460260:intergenic
AGGAGACTTTACCTGCCAGA+AGG 0.590234 tig0040779:+3120 Msa1460260:intergenic
TACGAGATGACGCTAAAGAA+CGG 0.597058 tig0040779:-2028 Msa1460260:CDS
GACTTTACCTGCCAGAAGGG+GGG 0.597402 tig0040779:+3124 None:intergenic
ATTGACTTCAACTCAATGGG+TGG 0.634666 tig0040779:-4291 None:intergenic
ATACGGCCCAGTGTGGCGGT+GGG 0.639347 tig0040779:+4138 Msa1460250:intergenic
CTACTTGATATAGAAGGCCA+AGG 0.663107 tig0040779:+2077 Msa1460250:intergenic
GTTGAGGATACGGCCCAGTG+TGG 0.698420 tig0040779:+4131 Msa1460250:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAGTTTTATTTTGATTTA+TGG - tig0040779:1517-1536 Msa1460260:intron 10.0%
!!! TTAGTTTTATTTTGATTTAT+GGG - tig0040779:1518-1537 Msa1460260:intron 10.0%
!! AAAAATATGTATAATAATTG+AGG + tig0040779:1733-1752 Msa1460260:intergenic 10.0%
!! ACAAAAATTATTATATAAGA+TGG + tig0040779:3481-3500 Msa1460260:intergenic 10.0%
!!! AAATAAATAAAAAAGGTATA+AGG - tig0040779:3558-3577 Msa1460260:intron 10.0%
!! AAATAAAACTAATAACTGTT+AGG + tig0040779:1510-1529 Msa1460260:intergenic 15.0%
!! TATCGTATTTCTTATAAAAT+CGG + tig0040779:2259-2278 Msa1460260:intergenic 15.0%
!! TTATGATGATATAGAATAAA+GGG + tig0040779:2447-2466 Msa1460260:intergenic 15.0%
!! AAATACAAATGAAAATAACC+TGG + tig0040779:1181-1200 Msa1460260:intergenic 20.0%
!! CAGAATGTATAATATAATTC+CGG + tig0040779:1642-1661 Msa1460260:intergenic 20.0%
!!! CTAATTGCAGTTAATAATTT+TGG - tig0040779:1950-1969 Msa1460260:intron 20.0%
!! TTATAAAATCGGTATTTCTT+TGG + tig0040779:2248-2267 Msa1460260:intergenic 20.0%
!! GTTATGATGATATAGAATAA+AGG + tig0040779:2448-2467 Msa1460260:intergenic 20.0%
!! TTCACATCATAGATAAAAAT+GGG + tig0040779:2641-2660 Msa1460260:intergenic 20.0%
!!! TGGATAAAACAAATCATTTT+TGG + tig0040779:2841-2860 Msa1460260:intergenic 20.0%
!!! AATATAAGATAAACCACTTT+TGG + tig0040779:2861-2880 Msa1460260:intergenic 20.0%
!!! ATCTTATATTTTGATCATGT+TGG - tig0040779:2871-2890 Msa1460260:intron 20.0%
!! ATATAAAATGACAAATGCAT+AGG + tig0040779:3260-3279 Msa1460260:intergenic 20.0%
!! TAGAGAATTTATTCCTTATT+GGG - tig0040779:3651-3670 Msa1460260:intron 20.0%
!! AACAAGTAAGTATTACAAAT+AGG + tig0040779:4106-4125 Msa1460260:intergenic 20.0%
!!! ATATGATTAAGATTTGTTGA+AGG - tig0040779:4170-4189 Msa1460260:CDS 20.0%
!! CATAAGTATTTATTTATCAC+AGG - tig0040779:4235-4254 Msa1460260:CDS 20.0%
!!! TCTTTTGAAGAAGAAATTAT+TGG - tig0040779:4271-4290 Msa1460260:CDS 20.0%
! AGTATGACAATTATGAACAA+CGG + tig0040779:1051-1070 Msa1460260:intergenic 25.0%
! TGTTCATAATTGTCATACTA+TGG - tig0040779:1052-1071 Msa1460260:intron 25.0%
! GTTCATAATTGTCATACTAT+GGG - tig0040779:1053-1072 Msa1460260:intron 25.0%
! ATGTGTTTAAAGATCTTGTT+GGG - tig0040779:1549-1568 Msa1460260:intron 25.0%
! ATATTATACATTCTGCTTTC+TGG - tig0040779:1647-1666 Msa1460260:intron 25.0%
!! GCTTCAATATGAGATTTTAT+TGG - tig0040779:1911-1930 Msa1460260:intron 25.0%
!!! ATGAGATTTTATTGGTGATT+CGG - tig0040779:1919-1938 Msa1460260:intron 25.0%
!!! TTCTTTGGAATTCAATTCTT+GGG + tig0040779:2045-2064 Msa1460260:intergenic 25.0%
! ATGGTTAGCATTATTTGATT+GGG + tig0040779:2124-2143 Msa1460260:intergenic 25.0%
! TATGGTTAGCATTATTTGAT+TGG + tig0040779:2125-2144 Msa1460260:intergenic 25.0%
! TAGTTATAGAGTATGTGTAT+AGG + tig0040779:2372-2391 Msa1460260:intergenic 25.0%
!! GTTATAAGTTTGAGTTAGTT+TGG + tig0040779:2404-2423 Msa1460260:intergenic 25.0%
! GATATAGAATAAAGGGAAAT+TGG + tig0040779:2440-2459 Msa1460260:intergenic 25.0%
! ATCATCATAACATTATGACT+TGG - tig0040779:2457-2476 Msa1460260:intron 25.0%
! CTTCACATCATAGATAAAAA+TGG + tig0040779:2642-2661 Msa1460260:intergenic 25.0%
!!! TGATTTGTTTTATCCAAAAG+TGG - tig0040779:2845-2864 Msa1460260:intron 25.0%
! TGAGATAATGAACTGAAATA+GGG - tig0040779:2981-3000 Msa1460260:intron 25.0%
! AGTAGAATTTAAGTGTTTCT+AGG + tig0040779:3081-3100 Msa1460260:intergenic 25.0%
! ATAAAACATGTTGTTATGAC+TGG + tig0040779:3331-3350 Msa1460260:intergenic 25.0%
! CAAAGCTGAAATTATTTAAC+AGG + tig0040779:3626-3645 Msa1460260:intergenic 25.0%
! CTGTTAAATAATTTCAGCTT+TGG - tig0040779:3624-3643 Msa1460260:intron 25.0%
! CTAGAGAATTTATTCCTTAT+TGG - tig0040779:3650-3669 Msa1460260:intron 25.0%
! TAAATGATTAAGACCTTGTT+TGG - tig0040779:3709-3728 Msa1460260:intron 25.0%
! AATAAGTGGAAAACAACTTA+TGG - tig0040779:3867-3886 Msa1460260:intron 25.0%
! TTGCAAGTACAAGATATTAT+CGG - tig0040779:4080-4099 Msa1460260:intron 25.0%
!!! TTAAGATTTGTTGAAGGATT+TGG - tig0040779:4176-4195 Msa1460260:CDS 25.0%
TTTACAAGCGAATTGTTCTT+TGG + tig0040779:787-806 Msa1460260:intergenic 30.0%
! CTTTGAGTTCAACAATGTTA+CGG + tig0040779:896-915 Msa1460260:intergenic 30.0%
! AACAGAGTGTTTATCTTCAT+AGG + tig0040779:922-941 Msa1460260:intergenic 30.0%
ACACTCTGTTAATCTTGTTA+TGG - tig0040779:932-951 Msa1460260:intron 30.0%
TTTGATCGGATTATTCTCAA+AGG - tig0040779:978-997 Msa1460260:intron 30.0%
! CATTCGTGTTTGTTCATTTT+TGG - tig0040779:1206-1225 Msa1460260:intron 30.0%
! AGTTGTTTGTTACTTGCTTA+AGG - tig0040779:1271-1290 Msa1460260:intron 30.0%
!! ATCTTAGCTTTTACAAGACT+GGG + tig0040779:1297-1316 Msa1460260:intergenic 30.0%
TTCAGGTCATATCTTATCTA+AGG + tig0040779:1395-1414 Msa1460260:intergenic 30.0%
ATTTATAATAAGTGGGACTG+TGG - tig0040779:1421-1440 Msa1460260:intron 30.0%
TTTATAATAAGTGGGACTGT+GGG - tig0040779:1422-1441 Msa1460260:intron 30.0%
!!! TTATTTTGATTTATGGGAGC+AGG - tig0040779:1524-1543 Msa1460260:intron 30.0%
GATGTGTTTAAAGATCTTGT+TGG - tig0040779:1548-1567 Msa1460260:intron 30.0%
TTTACTTAGAAAGGAAAGGA+AGG + tig0040779:1701-1720 Msa1460260:intergenic 30.0%
AGCATTTACTTAGAAAGGAA+AGG + tig0040779:1705-1724 Msa1460260:intergenic 30.0%
TTGTAGCATATATAGTTGCA+TGG - tig0040779:1771-1790 Msa1460260:intron 30.0%
TATATAGTTGCATGGAATGT+AGG - tig0040779:1779-1798 Msa1460260:intron 30.0%
! ACTAAAACTTTGGAGATACT+TGG + tig0040779:1848-1867 Msa1460260:intergenic 30.0%
!!! ATCTCCAAAGTTTTAGTTGT+TGG - tig0040779:1851-1870 Msa1460260:intron 30.0%
!! ACTATCCAACAGCTTTAAAT+CGG + tig0040779:1992-2011 Msa1460260:intergenic 30.0%
!! GTTCTTTGGAATTCAATTCT+TGG + tig0040779:2046-2065 Msa1460260:intergenic 30.0%
! GTTTGAGTTAGTTTGGTATT+CGG + tig0040779:2397-2416 Msa1460260:intergenic 30.0%
! AACATTATGACTTGGCAAAT+AGG - tig0040779:2465-2484 Msa1460260:intron 30.0%
! ACATTATGACTTGGCAAATA+GGG - tig0040779:2466-2485 Msa1460260:intron 30.0%
! TTTCAAAAGCATGTGAATCA+AGG + tig0040779:2599-2618 Msa1460260:intergenic 30.0%
ATGATGTGAAGAAAATGAAC+AGG - tig0040779:2651-2670 Msa1460260:intron 30.0%
TGATGTGAAGAAAATGAACA+GGG - tig0040779:2652-2671 Msa1460260:intron 30.0%
CTGAGATAATGAACTGAAAT+AGG - tig0040779:2980-2999 Msa1460260:intron 30.0%
TAATGAACTGAAATAGGGTA+TGG - tig0040779:2986-3005 Msa1460260:intron 30.0%
GAAAAAGAGCAAAGAAAGTT+AGG - tig0040779:3113-3132 Msa1460260:intron 30.0%
TTTATCCTTAACACACTTCA+TGG + tig0040779:3685-3704 Msa1460260:intergenic 30.0%
!!! GCTGTTTTTATAAGCTATCT+TGG - tig0040779:3832-3851 Msa1460260:intron 30.0%
! GATGTCTTTTTATGCTAGAT+AGG + tig0040779:4214-4233 Msa1460260:intergenic 30.0%
CTAAATATGTAACGCCGAAT+TGG + tig0040779:749-768 Msa1460260:intergenic 35.0%
! TTGTTCTTTGGTGACTTTGT+GGG + tig0040779:775-794 Msa1460260:intergenic 35.0%
! ATTGTTCTTTGGTGACTTTG+TGG + tig0040779:776-795 Msa1460260:intergenic 35.0%
GAACATCATCAATATCGTCA+CGG + tig0040779:836-855 Msa1460260:intergenic 35.0%
CGTAACATTGTTGAACTCAA+AGG - tig0040779:894-913 Msa1460260:intron 35.0%
CCAAGAAACAAGAAATTCTC+AGG + tig0040779:1101-1120 Msa1460260:intergenic 35.0%
! CCTGAGAATTTCTTGTTTCT+TGG - tig0040779:1098-1117 Msa1460260:intron 35.0%
AAGAAGAAATTCGCCTCTTA+AGG - tig0040779:1123-1142 Msa1460260:intron 35.0%
!! CATCTTAGCTTTTACAAGAC+TGG + tig0040779:1298-1317 Msa1460260:intergenic 35.0%
ATCAGAGTCTATCCTTGATT+AGG - tig0040779:1320-1339 Msa1460260:intron 35.0%
!!! TCAAACTGGTTTTGTAAGAG+CGG - tig0040779:1465-1484 Msa1460260:intron 35.0%
! AAGTGCTGCGTAAAAGTTAT+GGG - tig0040779:1594-1613 Msa1460260:intron 35.0%
CTGTGAGCATTTACTTAGAA+AGG + tig0040779:1710-1729 Msa1460260:intergenic 35.0%
! TGTAGTGTAGACTTGTTTGT+TGG - tig0040779:1813-1832 Msa1460260:intron 35.0%
CCAACCAACAACTAAAACTT+TGG + tig0040779:1858-1877 Msa1460260:intergenic 35.0%
!!! CCAAAGTTTTAGTTGTTGGT+TGG - tig0040779:1855-1874 Msa1460260:intron 35.0%
!!! AGTTTTAGTTGTTGGTTGGT+CGG - tig0040779:1859-1878 Msa1460260:intron 35.0%
ATCTCATATTGAAGCTTACG+AGG + tig0040779:1906-1925 Msa1460260:intergenic 35.0%
TAAAGCTGTTGGATAGTGAT+CGG - tig0040779:1995-2014 Msa1460260:intron 35.0%
! CAAATAGCATTGCTGTTCTT+TGG + tig0040779:2060-2079 Msa1460260:intergenic 35.0%
CAAAGAACAGCAATGCTATT+TGG - tig0040779:2058-2077 Msa1460260:CDS 35.0%
ACCATAAAAAGTCAAAGTGC+TGG - tig0040779:2139-2158 Msa1460260:intron 35.0%
!! ATAAAAAGTCAAAGTGCTGG+CGG - tig0040779:2142-2161 Msa1460260:intron 35.0%
! AGAGTATTCTCTATCGTGAA+GGG + tig0040779:2314-2333 Msa1460260:intergenic 35.0%
! TAGAGTATTCTCTATCGTGA+AGG + tig0040779:2315-2334 Msa1460260:intergenic 35.0%
AAATGGGTGTGAGAAACATT+GGG + tig0040779:2625-2644 Msa1460260:intergenic 35.0%
AAAATGGGTGTGAGAAACAT+TGG + tig0040779:2626-2645 Msa1460260:intergenic 35.0%
ATCTTTGATGCTATTCTTCG+TGG - tig0040779:2676-2695 Msa1460260:intron 35.0%
!!! TGGACATATTGATTTTGCGT+CGG - tig0040779:2696-2715 Msa1460260:intron 35.0%
TTGGCACTACTTGATATAGA+AGG + tig0040779:2730-2749 Msa1460260:intergenic 35.0%
TACATGATCAGAATCTTTCC+AGG + tig0040779:2928-2947 Msa1460260:intergenic 35.0%
TGGAAAGATTCTGATCATGT+AGG - tig0040779:2927-2946 Msa1460260:intron 35.0%
GGAAAGATTCTGATCATGTA+GGG - tig0040779:2928-2947 Msa1460260:intron 35.0%
TATTACACTACGATTCAGTG+AGG - tig0040779:2957-2976 Msa1460260:intron 35.0%
ACTCCTTCAATAAGAGAAAG+AGG - tig0040779:3036-3055 Msa1460260:intron 35.0%
CATCCTCTTTCTCTTATTGA+AGG + tig0040779:3042-3061 Msa1460260:intergenic 35.0%
CTTCAATAAGAGAAAGAGGA+TGG - tig0040779:3040-3059 Msa1460260:intron 35.0%
AAAGAGCAAAGAAAGTTAGG+TGG - tig0040779:3116-3135 Msa1460260:intron 35.0%
AAGAGCAAAGAAAGTTAGGT+GGG - tig0040779:3117-3136 Msa1460260:intron 35.0%
ACGGAAGAAAATCTAAGTTC+AGG + tig0040779:3174-3193 Msa1460260:intergenic 35.0%
! AAAAGAGCACATTATACACG+AGG + tig0040779:3197-3216 Msa1460260:intergenic 35.0%
!! TCTTTAGCTTGTTCATTGCT+CGG + tig0040779:3440-3459 Msa1460260:intergenic 35.0%
!! GCTAAAGAAAGTAGCTCTAA+AGG - tig0040779:3452-3471 Msa1460260:intron 35.0%
TTGAGCTGTTTATCCAAACA+AGG + tig0040779:3725-3744 Msa1460260:intergenic 35.0%
!! GGAGAGCTTTTGAAAATAAG+TGG - tig0040779:3853-3872 Msa1460260:intron 35.0%
!!! ATGGATTTTAGGGTCTGTTT+TGG + tig0040779:3974-3993 Msa1460260:intergenic 35.0%
CTACTTCTGTTACACTATGT+TGG + tig0040779:4131-4150 Msa1460260:intergenic 35.0%
GTTCGCTCCATCTTTATCTT+CGG - tig0040779:705-724 Msa1460260:intron 40.0%
ATACTATGGGAGTTATGCAC+AGG - tig0040779:1066-1085 Msa1460260:intron 40.0%
TACTATGGGAGTTATGCACA+GGG - tig0040779:1067-1086 Msa1460260:intron 40.0%
!!! CTCTCTGTCTTTTTCAAACC+AGG - tig0040779:1160-1179 Msa1460260:intron 40.0%
!!! CAAACTGGTTTTGTAAGAGC+GGG - tig0040779:1466-1485 Msa1460260:intron 40.0%
CACTTCAGGAGCAACATAAT+AGG + tig0040779:1579-1598 Msa1460260:intergenic 40.0%
! TAACTTTTACGCAGCACTTC+AGG + tig0040779:1593-1612 Msa1460260:intergenic 40.0%
!! GAAGTGCTGCGTAAAAGTTA+TGG - tig0040779:1593-1612 Msa1460260:intron 40.0%
ATGGGCCTGAAACTGATATT+TGG - tig0040779:1612-1631 Msa1460260:intron 40.0%
GCACTCCAAATATCAGTTTC+AGG + tig0040779:1620-1639 Msa1460260:intergenic 40.0%
! GAAACTGATATTTGGAGTGC+CGG - tig0040779:1620-1639 Msa1460260:intron 40.0%
! GTCAACCGATTTAAAGCTGT+TGG - tig0040779:1984-2003 Msa1460260:intron 40.0%
! GTTGACTCACATTGTGTGTT+AGG - tig0040779:2017-2036 Msa1460260:CDS 40.0%
!! GCCAGCACTTTGACTTTTTA+TGG + tig0040779:2143-2162 Msa1460260:intergenic 40.0%
TATGAGAGAATCTCTCCTCA+AGG - tig0040779:2282-2301 Msa1460260:intron 40.0%
ATGAGAGAATCTCTCCTCAA+GGG - tig0040779:2283-2302 Msa1460260:intron 40.0%
GAGTATTCTCTATCGTGAAG+GGG + tig0040779:2313-2332 Msa1460260:intergenic 40.0%
AGCATGTGAATCAAGGTAGA+AGG + tig0040779:2592-2611 Msa1460260:intergenic 40.0%
CTACTTGATATAGAAGGCCA+AGG + tig0040779:2724-2743 Msa1460260:intergenic 40.0%
ATCAAGTAGTGCCAAAGATC+TGG - tig0040779:2735-2754 Msa1460260:intron 40.0%
CATCTTCTTGACCAGATCTT+TGG + tig0040779:2749-2768 Msa1460260:intergenic 40.0%
TACGAGATGACGCTAAAGAA+CGG - tig0040779:2770-2789 Msa1460260:intron 40.0%
! TTTTGATCATGTTGGCACTG+AGG - tig0040779:2879-2898 Msa1460260:intron 40.0%
! TTTGATCATGTTGGCACTGA+GGG - tig0040779:2880-2899 Msa1460260:intron 40.0%
! CAAAGAAAGTTAGGTGGGTT+AGG - tig0040779:3122-3141 Msa1460260:intron 40.0%
! TGGGTTAGGACAAACAAGTA+TGG - tig0040779:3136-3155 Msa1460260:CDS 40.0%
ATCTAAGTTCAGGAGTAAGC+AGG + tig0040779:3164-3183 Msa1460260:intergenic 40.0%
TGCAAAGTCGTCTTATCACA+GGG + tig0040779:3237-3256 Msa1460260:intergenic 40.0%
TATATGCTCCAGATCATCCT+TGG - tig0040779:3348-3367 Msa1460260:intron 40.0%
ACTCTTATCCAAGGATGATC+TGG + tig0040779:3359-3378 Msa1460260:intergenic 40.0%
CATCCTTGGATAAGAGTAGA+TGG - tig0040779:3362-3381 Msa1460260:intron 40.0%
TCTCCATCTACTCTTATCCA+AGG + tig0040779:3368-3387 Msa1460260:intergenic 40.0%
GCTCAAAACAGCAATATCAG+AGG + tig0040779:3404-3423 Msa1460260:intergenic 40.0%
CCTTAACACACTTCATGGTT+AGG + tig0040779:3680-3699 Msa1460260:intergenic 40.0%
CCTAACCATGAAGTGTGTTA+AGG - tig0040779:3677-3696 Msa1460260:intron 40.0%
TAATGACATGAACACCTGTG+AGG + tig0040779:3931-3950 Msa1460260:intergenic 40.0%
!! ATAGTTTCAGCTTTGAAGCC+TGG + tig0040779:4001-4020 Msa1460260:intergenic 40.0%
!! AGTTTTGTGGGAGGATTGTG+GGG + tig0040779:611-630 Msa1460260:intergenic 45.0%
!! GAGTTTTGTGGGAGGATTGT+GGG + tig0040779:612-631 Msa1460260:intergenic 45.0%
!! TATTGATGATGTTCGCCGTG+AGG - tig0040779:842-861 Msa1460260:intron 45.0%
GATGCATGATCTGAACCTCA+CGG + tig0040779:860-879 Msa1460260:intergenic 45.0%
CAGATCATGCATCATCTCAC+TGG - tig0040779:867-886 Msa1460260:intron 45.0%
! CTTGTTATGGAGCTTTGTGC+TGG - tig0040779:945-964 Msa1460260:intron 45.0%
! TTATGGAGCTTTGTGCTGGT+GGG - tig0040779:949-968 Msa1460260:intron 45.0%
! CTGGTGGGGAACTTTTTGAT+CGG - tig0040779:964-983 Msa1460260:intron 45.0%
AAATTCGCCTCTTAAGGCCA+CGG - tig0040779:1129-1148 Msa1460260:intron 45.0%
CTGAAGCGTGAACCTAATCA+AGG + tig0040779:1335-1354 Msa1460260:intergenic 45.0%
ATAATAAGTGGGACTGTGGG+AGG - tig0040779:1425-1444 Msa1460260:intron 45.0%
GGCATTCATCACTGTCAAAC+TGG - tig0040779:1451-1470 Msa1460260:intron 45.0%
GCGCATGTGGAATAAAGCAA+CGG - tig0040779:2173-2192 Msa1460260:intron 45.0%
CATGTGGAATAAAGCAACGG+TGG - tig0040779:2176-2195 Msa1460260:intron 45.0%
TTTGTAGTACGAGACGAGAG+TGG + tig0040779:2214-2233 Msa1460260:intergenic 45.0%
TGAGAGAATCTCTCCTCAAG+GGG - tig0040779:2284-2303 Msa1460260:intron 45.0%
! TTGATTTTGCGTCGGATCCT+TGG - tig0040779:2704-2723 Msa1460260:intron 45.0%
GAGCACATTATACACGAGGA+CGG + tig0040779:3193-3212 Msa1460260:intergenic 45.0%
GTGCAAAGTCGTCTTATCAC+AGG + tig0040779:3238-3257 Msa1460260:intergenic 45.0%
! CATGGTTAGGTTGCCCAATA+AGG + tig0040779:3667-3686 Msa1460260:intergenic 45.0%
ACCCTAAAATCCATGTGTCC+AGG - tig0040779:3980-3999 Msa1460260:intron 45.0%
! GCCTGGACACATGGATTTTA+GGG + tig0040779:3984-4003 Msa1460260:intergenic 45.0%
! AGCCTGGACACATGGATTTT+AGG + tig0040779:3985-4004 Msa1460260:intergenic 45.0%
!!! TTATTATAAATATATTTTTC+AGG + tig0040779:1412-1431 Msa1460260:intergenic 5.0%
!! AAAAATATATTTATAATAAG+TGG - tig0040779:1413-1432 Msa1460260:intron 5.0%
!! AAAATATATTTATAATAAGT+GGG - tig0040779:1414-1433 Msa1460260:intron 5.0%
!!! TTTTTATTTATTTATTATAG+TGG + tig0040779:3551-3570 Msa1460260:intergenic 5.0%
!! CTATAATAAATAAATAAAAA+AGG - tig0040779:3551-3570 Msa1460260:intron 5.0%
!! GGTGGTAGTGGTGTTGATTC+CGG + tig0040779:556-575 Msa1460260:intergenic 50.0%
TTTGGGTGGAGGATCGGAAT+GGG + tig0040779:583-602 Msa1460260:intergenic 50.0%
!! TTTTGGGTGGAGGATCGGAA+TGG + tig0040779:584-603 Msa1460260:intergenic 50.0%
!!! AGGATTGTGGGGGCGTTTTT+GGG + tig0040779:600-619 Msa1460260:intergenic 50.0%
! GTTTTGTGGGAGGATTGTGG+GGG + tig0040779:610-629 Msa1460260:intergenic 50.0%
!! GGAGTTTTGTGGGAGGATTG+TGG + tig0040779:613-632 Msa1460260:intergenic 50.0%
!! GTGAGGGAGTGGAGTTTTGT+GGG + tig0040779:623-642 Msa1460260:intergenic 50.0%
CGATTGGACGGTTGAGGATA+CGG + tig0040779:680-699 Msa1460260:intergenic 50.0%
AGCGAACGTCTTCGATTGGA+CGG + tig0040779:692-711 Msa1460260:intergenic 50.0%
ATGGAGCGAACGTCTTCGAT+TGG + tig0040779:696-715 Msa1460260:intergenic 50.0%
TTCGCGGCCGAAGATAAAGA+TGG + tig0040779:715-734 Msa1460260:intergenic 50.0%
TTTATCTTCGGCCGCGAACT+CGG - tig0040779:717-736 Msa1460260:intron 50.0%
! ATGTAACGCCGAATTGGCCT+CGG + tig0040779:743-762 Msa1460260:intergenic 50.0%
! GTTATGGAGCTTTGTGCTGG+TGG - tig0040779:948-967 Msa1460260:intron 50.0%
! TATGGAGCTTTGTGCTGGTG+GGG - tig0040779:950-969 Msa1460260:intron 50.0%
! CCAAAATCCGTGGCCTTAAG+AGG + tig0040779:1139-1158 Msa1460260:intergenic 50.0%
! CCTCTTAAGGCCACGGATTT+TGG - tig0040779:1136-1155 Msa1460260:intron 50.0%
GACAGAGAGACCAAAATCCG+TGG + tig0040779:1149-1168 Msa1460260:intergenic 50.0%
!!! CTGGTTTTGTAAGAGCGGGT+TGG - tig0040779:1470-1489 Msa1460260:intron 50.0%
AGACTTTACCTGCCAGAAGG+GGG + tig0040779:1678-1697 Msa1460260:intergenic 50.0%
GAGACTTTACCTGCCAGAAG+GGG + tig0040779:1679-1698 Msa1460260:intergenic 50.0%
GGAGACTTTACCTGCCAGAA+GGG + tig0040779:1680-1699 Msa1460260:intergenic 50.0%
AGGAGACTTTACCTGCCAGA+AGG + tig0040779:1681-1700 Msa1460260:intergenic 50.0%
!! TTGGCTCGACACCTTTTCGT+CGG - tig0040779:2077-2096 Msa1460260:CDS 50.0%
TTCGCGTGTTTCCGACGAAA+AGG + tig0040779:2091-2110 Msa1460260:intergenic 50.0%
!! CAAAGTGCTGGCGGAAAACA+CGG - tig0040779:2151-2170 Msa1460260:intron 50.0%
! GTTGGCACTGAGGGAAATTC+TGG - tig0040779:2889-2908 Msa1460260:intron 50.0%
!! TCTGGCATTGATTGCTCACC+TGG - tig0040779:2907-2926 Msa1460260:intron 50.0%
AGGCTGTTGGGGAAAGGTTA+TGG + tig0040779:3911-3930 Msa1460260:intergenic 50.0%
TGAACACCTGTGAGGCTGTT+GGG + tig0040779:3923-3942 Msa1460260:intergenic 50.0%
ATGAACACCTGTGAGGCTGT+TGG + tig0040779:3924-3943 Msa1460260:intergenic 50.0%
!! AGCTTTGAAGCCTGGACACA+TGG + tig0040779:3993-4012 Msa1460260:intergenic 50.0%
ATGGGTGGCAATTGCAGCAC+CGG - tig0040779:522-541 Msa1460260:CDS 55.0%
!!! GGCGTTTTTGGGTGGAGGAT+CGG + tig0040779:589-608 Msa1460260:intergenic 55.0%
!!! ATTGTGGGGGCGTTTTTGGG+TGG + tig0040779:597-616 Msa1460260:intergenic 55.0%
!!! GAGGATTGTGGGGGCGTTTT+TGG + tig0040779:601-620 Msa1460260:intergenic 55.0%
!! AGGGAGTGGAGTTTTGTGGG+AGG + tig0040779:620-639 Msa1460260:intergenic 55.0%
! GGTGAGGGAGTGGAGTTTTG+TGG + tig0040779:624-643 Msa1460260:intergenic 55.0%
CGTCTTCGATTGGACGGTTG+AGG + tig0040779:686-705 Msa1460260:intergenic 55.0%
ACTTTACCTGCCAGAAGGGG+GGG + tig0040779:1676-1695 Msa1460260:intergenic 55.0%
GACTTTACCTGCCAGAAGGG+GGG + tig0040779:1677-1696 Msa1460260:intergenic 55.0%
GAACACCTGTGAGGCTGTTG+GGG + tig0040779:3922-3941 Msa1460260:intergenic 55.0%
!! AGTGGTGTTGATTCCGGCGC+CGG + tig0040779:550-569 Msa1460260:intergenic 60.0%
!! GGAATGGGTGGTGGTGGTAG+TGG + tig0040779:568-587 Msa1460260:intergenic 60.0%
! AGGATCGGAATGGGTGGTGG+TGG + tig0040779:574-593 Msa1460260:intergenic 60.0%
TGGAGGATCGGAATGGGTGG+TGG + tig0040779:577-596 Msa1460260:intergenic 60.0%
AAGGGTGGTTGAGGGGGTGA+GGG + tig0040779:639-658 Msa1460260:intergenic 60.0%
TAAGGGTGGTTGAGGGGGTG+AGG + tig0040779:640-659 Msa1460260:intergenic 60.0%
GTGGGTAAGGGTGGTTGAGG+GGG + tig0040779:645-664 Msa1460260:intergenic 60.0%
GGTGGGTAAGGGTGGTTGAG+GGG + tig0040779:646-665 Msa1460260:intergenic 60.0%
CGGTGGGTAAGGGTGGTTGA+GGG + tig0040779:647-666 Msa1460260:intergenic 60.0%
GTTGAGGATACGGCCCAGTG+TGG + tig0040779:670-689 Msa1460260:intergenic 60.0%
GAACTCGGCCGAGGCCAATT+CGG - tig0040779:732-751 Msa1460260:intron 60.0%
AAGTGGGACTGTGGGAGGCA+AGG - tig0040779:1430-1449 Msa1460260:intron 60.0%
! TTTCTGGTGTCCCCCCCTTC+TGG - tig0040779:1663-1682 Msa1460260:intron 60.0%
CGTGAAGGGGAAACCCCTTG+AGG + tig0040779:2300-2319 Msa1460260:intergenic 60.0%
CCTGTGAGGCTGTTGGGGAA+AGG + tig0040779:3917-3936 Msa1460260:intergenic 60.0%
CCTTTCCCCAACAGCCTCAC+AGG - tig0040779:3914-3933 Msa1460260:intron 60.0%
GGGTGGAGGATCGGAATGGG+TGG + tig0040779:580-599 Msa1460260:intergenic 65.0%
!!! GTGGGGGCGTTTTTGGGTGG+AGG + tig0040779:594-613 Msa1460260:intergenic 65.0%
TGGTTGAGGGGGTGAGGGAG+TGG + tig0040779:634-653 Msa1460260:intergenic 65.0%
GCGGTGGGTAAGGGTGGTTG+AGG + tig0040779:648-667 Msa1460260:intergenic 65.0%
AGTGTGGCGGTGGGTAAGGG+TGG + tig0040779:654-673 Msa1460260:intergenic 65.0%
ACCCTTACCCACCGCCACAC+TGG - tig0040779:653-672 Msa1460260:intron 65.0%
CCCAGTGTGGCGGTGGGTAA+GGG + tig0040779:657-676 Msa1460260:intergenic 65.0%
CCCTTACCCACCGCCACACT+GGG - tig0040779:654-673 Msa1460260:intron 65.0%
ATACGGCCCAGTGTGGCGGT+GGG + tig0040779:663-682 Msa1460260:intergenic 65.0%
GAGGATACGGCCCAGTGTGG+CGG + tig0040779:667-686 Msa1460260:intergenic 65.0%
! ATTGGCCTCGGCCGAGTTCG+CGG + tig0040779:731-750 Msa1460260:intergenic 65.0%
GGCGGAAAACACGGCGCATG+TGG - tig0040779:2160-2179 Msa1460260:intron 65.0%
!! GGCAATTGCAGCACCGGCGC+CGG - tig0040779:528-547 Msa1460260:CDS 70.0%
GCCCAGTGTGGCGGTGGGTA+AGG + tig0040779:658-677 Msa1460260:intergenic 70.0%
GATACGGCCCAGTGTGGCGG+TGG + tig0040779:664-683 Msa1460260:intergenic 70.0%
TGGTGTCCCCCCCTTCTGGC+AGG - tig0040779:1667-1686 Msa1460260:intron 70.0%
!! GTTGATTCCGGCGCCGGCGC+CGG + tig0040779:544-563 Msa1460260:intergenic 75.0%
TTCGGCCGCGAACTCGGCCG+AGG - tig0040779:723-742 Msa1460260:intron 75.0%
!!! TGCAGCACCGGCGCCGGCGC+CGG - tig0040779:534-553 Msa1460260:CDS 85.0%
Chromosome Type Strat End Strand Name
tig0040779 gene 522 4298 522 ID=Msa1460260;Name=Msa1460260
tig0040779 mRNA 522 4298 522 ID=Msa1460260-mRNA-1;Parent=Msa1460260;Name=Msa1460260-mRNA-1;_AED=0.30;_eAED=0.36;_QI=0|0|0|1|0.25|0.4|5|0|169
tig0040779 exon 4142 4298 4142 ID=Msa1460260-mRNA-1:exon:22648;Parent=Msa1460260-mRNA-1
tig0040779 exon 3132 3259 3132 ID=Msa1460260-mRNA-1:exon:22647;Parent=Msa1460260-mRNA-1
tig0040779 exon 2013 2147 2013 ID=Msa1460260-mRNA-1:exon:22646;Parent=Msa1460260-mRNA-1
tig0040779 exon 1347 1394 1347 ID=Msa1460260-mRNA-1:exon:22645;Parent=Msa1460260-mRNA-1
tig0040779 exon 522 563 522 ID=Msa1460260-mRNA-1:exon:22644;Parent=Msa1460260-mRNA-1
tig0040779 CDS 4142 4298 4142 ID=Msa1460260-mRNA-1:cds;Parent=Msa1460260-mRNA-1
tig0040779 CDS 3132 3259 3132 ID=Msa1460260-mRNA-1:cds;Parent=Msa1460260-mRNA-1
tig0040779 CDS 2013 2147 2013 ID=Msa1460260-mRNA-1:cds;Parent=Msa1460260-mRNA-1
tig0040779 CDS 1347 1394 1347 ID=Msa1460260-mRNA-1:cds;Parent=Msa1460260-mRNA-1
tig0040779 CDS 522 563 522 ID=Msa1460260-mRNA-1:cds;Parent=Msa1460260-mRNA-1
Gene Sequence

>Msa1460260

ATGGGTGGCAATTGCAGCACCGGCGCCGGCGCCGGAATCAACACCACTACCACCACCACCCATTCCGATCCTCCACCCAAAAACGCCCCCACAATCCTCCCACAAAACTCCACTCCCTCACCCCCTCAACCACCCTTACCCACCGCCACACTGGGCCATCTTGTTGGGAGTGCCTATTATGTTGCTCCTGAAGTGCTGCGTAAAAGTTATGGGCCTGAAACTGATATTTGGAGTGCCGGAATTATATTATACATTCTGCTTTCTGGTGTCCCCCCCTTCTGGCAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTTGCGTCGGATCCTTGGCCTTCTATATCAAGTAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAGATGACGCTAAAGAACGGATATCAGCAGTTGAAAATGAAACAGTCCGAGCAATGAACAAGCTAAAGAAAGTAGCTCTAAAGGTTATCGCTGAAAATCTTTTGAAGAAGAAATTATTGGCTTGA
Protein sequence

>Msa1460260

MGGNCSTGAGAGINTTTTTTHSDPPPKNAPTILPQNSTPSPPQPPLPTATLGHLVGSAYYVAPEVLRKSYGPETDIWSAGIILYILLSGVPPFWQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRDDAKERISAVENETVRAMNKLKKVALKVIAENLLKKKLLA*