Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461880 | AES96258.2 | 77.807 | 374 | 47 | 2 | 1 | 374 | 1 | 338 | 0.0 | 551 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461880 | sp|Q647G4|OL102_ARAHY | 54.745 | 137 | 61 | 1 | 10 | 146 | 1 | 136 | 2.14e-30 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461880 | G7K2T2 | 77.807 | 374 | 47 | 2 | 1 | 374 | 1 | 338 | 0.0 | 551 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1461880 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461880 | MtrunA17_Chr5g0414001 | 80.405 | 296 | 46 | 1 | 1 | 296 | 1 | 284 | 1.27e-161 | 454 |
| Msa1461880 | MtrunA17_Chr5g0414031 | 58.303 | 271 | 64 | 6 | 153 | 374 | 22 | 292 | 7.56e-85 | 261 |
| Msa1461880 | MtrunA17_Chr7g0227501 | 72.593 | 135 | 34 | 2 | 14 | 146 | 15 | 148 | 1.86e-42 | 147 |
| Msa1461880 | MtrunA17_Chr5g0413991 | 97.959 | 49 | 1 | 0 | 326 | 374 | 20 | 68 | 1.31e-27 | 105 |
| Msa1461880 | MtrunA17_Chr4g0058681 | 54.217 | 83 | 38 | 0 | 44 | 126 | 36 | 118 | 4.43e-23 | 95.5 |
| Msa1461880 | MtrunA17_Chr6g0449621 | 42.735 | 117 | 67 | 0 | 27 | 143 | 41 | 157 | 1.66e-15 | 74.3 |
| Msa1461880 | MtrunA17_Chr3g0139191 | 35.135 | 111 | 71 | 1 | 36 | 146 | 24 | 133 | 2.03e-15 | 73.2 |
| Msa1461880 | MtrunA17_Chr1g0196841 | 36.111 | 108 | 69 | 0 | 43 | 150 | 56 | 163 | 3.07e-15 | 73.2 |
| Msa1461880 | MtrunA17_Chr5g0414011 | 87.500 | 32 | 4 | 0 | 343 | 374 | 1 | 32 | 2.87e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461880 | AT1G24040.3 | 57.143 | 196 | 78 | 1 | 185 | 374 | 80 | 275 | 3.46e-73 | 231 |
| Msa1461880 | AT1G24040.2 | 57.143 | 196 | 78 | 1 | 185 | 374 | 80 | 275 | 3.46e-73 | 231 |
| Msa1461880 | AT1G24040.1 | 57.143 | 196 | 78 | 1 | 185 | 374 | 80 | 275 | 3.46e-73 | 231 |
| Msa1461880 | AT3G01570.1 | 43.165 | 139 | 76 | 3 | 17 | 155 | 7 | 142 | 2.39e-29 | 112 |
| Msa1461880 | AT3G27660.1 | 49.138 | 116 | 58 | 1 | 40 | 155 | 43 | 157 | 9.15e-20 | 86.7 |
| Msa1461880 | AT3G27660.2 | 49.138 | 116 | 58 | 1 | 40 | 155 | 43 | 157 | 9.15e-20 | 86.7 |
| Msa1461880 | AT5G40420.1 | 52.885 | 104 | 49 | 0 | 43 | 146 | 48 | 151 | 3.87e-18 | 82.4 |
| Msa1461880 | AT5G51210.1 | 39.773 | 88 | 53 | 0 | 39 | 126 | 17 | 104 | 1.64e-16 | 76.3 |
| Msa1461880 | AT4G25140.1 | 38.776 | 98 | 55 | 1 | 28 | 125 | 27 | 119 | 5.09e-13 | 67.4 |
| Msa1461880 | AT2G25890.2 | 36.937 | 111 | 70 | 0 | 40 | 150 | 44 | 154 | 3.09e-11 | 62.0 |
| Msa1461880 | AT2G25890.1 | 36.937 | 111 | 70 | 0 | 40 | 150 | 19 | 129 | 4.81e-11 | 60.8 |
Find 95 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAAATCCTGTTCAATTT+TGG | 0.099678 | tig0041768:+8655 | Msa1461880:CDS |
| CTTGCTGGACTCTCCCTTCT+TGG | 0.217986 | tig0041768:+8224 | Msa1461880:CDS |
| CCTGTAGAGGCCCTTGATCC+TGG | 0.232255 | tig0041768:-8412 | None:intergenic |
| ACATGTTGATATAACATTTC+GGG | 0.273357 | tig0041768:-8754 | None:intergenic |
| AACCAAAATTGAACAGGATT+TGG | 0.306221 | tig0041768:-8657 | None:intergenic |
| TTGAACAGGATTTGGTGTTT+TGG | 0.309538 | tig0041768:-8649 | None:intergenic |
| AACATGTTGATATAACATTT+CGG | 0.331289 | tig0041768:-8755 | None:intergenic |
| CAAGTGCTTGCCGTAATTAC+CGG | 0.339584 | tig0041768:+8173 | Msa1461880:CDS |
| GTTCCAGCCACCATTGTCAT+TGG | 0.345015 | tig0041768:+8305 | Msa1461880:CDS |
| TAATCAAATATTGTTTCATA+AGG | 0.361459 | tig0041768:-8784 | None:intergenic |
| CCGCATGTGGCGACACTGAT+TGG | 0.372849 | tig0041768:+8824 | Msa1461880:CDS |
| TCTTGGAACACTCACTGGAC+TGG | 0.377988 | tig0041768:+8241 | Msa1461880:CDS |
| GAGGACTCGACGAGTGGTTT+TGG | 0.383378 | tig0041768:-8576 | None:intergenic |
| CTTGGAACACTCACTGGACT+GGG | 0.386557 | tig0041768:+8242 | Msa1461880:CDS |
| GGAAGGATTCGAGGTGTTGC+AGG | 0.387564 | tig0041768:-8619 | None:intergenic |
| TGGCACGGTCCTTGTTCTCA+TGG | 0.393061 | tig0041768:+8372 | Msa1461880:CDS |
| GGTGTACTGCTTGCACTTGC+TGG | 0.398295 | tig0041768:+8209 | Msa1461880:CDS |
| GTGTTGCAGGTTGGTTAGTT+CGG | 0.403050 | tig0041768:-8606 | None:intergenic |
| ATGGTGGCTGGAACAAGAAC+AGG | 0.405324 | tig0041768:-8296 | None:intergenic |
| TACTCGAACCAAAATTGAAC+AGG | 0.407717 | tig0041768:-8663 | None:intergenic |
| TACAGGAAGGCCGGTAATTA+CGG | 0.409924 | tig0041768:-8183 | None:intergenic |
| TCTGCGAGTAAACAGACTAT+TGG | 0.411736 | tig0041768:-8707 | None:intergenic |
| TTCGTCTCTGCAACATCAGC+AGG | 0.418356 | tig0041768:-10022 | None:intergenic |
| CTGTAGAGGCCCTTGATCCT+GGG | 0.419299 | tig0041768:-8411 | None:intergenic |
| CCTTAGGCCCTCAAAATCAT+TGG | 0.420597 | tig0041768:+8543 | Msa1461880:CDS |
| TCCCTTCTTGGAACACTCAC+TGG | 0.449866 | tig0041768:+8236 | Msa1461880:CDS |
| ATTCTTTCACTCTCCTCCTT+AGG | 0.453455 | tig0041768:+8527 | Msa1461880:CDS |
| CTGCGAGTAAACAGACTATT+GGG | 0.455560 | tig0041768:-8706 | None:intergenic |
| GGAAGTAGAGGAAGGATTCG+AGG | 0.455777 | tig0041768:-8628 | None:intergenic |
| ATAAGTGTAAGGCGAATCCT+TGG | 0.455782 | tig0041768:-8954 | None:intergenic |
| CGCATGTGGCGACACTGATT+GGG | 0.458513 | tig0041768:+8825 | Msa1461880:CDS |
| ATTCCCTTCAGGAGGGGCAT+TGG | 0.469054 | tig0041768:+9850 | Msa1461880:intron |
| CAAGTGAGGAACTGATTTCT+CGG | 0.471299 | tig0041768:+9890 | Msa1461880:CDS |
| CCGTGGATAAATCTCTTAGA+AGG | 0.481490 | tig0041768:+8984 | Msa1461880:CDS |
| TTCGCCTTACACTTATAGCT+TGG | 0.495890 | tig0041768:+8961 | Msa1461880:CDS |
| GCAAGCACTTGAGAAGTTGA+TGG | 0.495981 | tig0041768:-8161 | None:intergenic |
| CCAGGATCAAGGGCCTCTAC+AGG | 0.506135 | tig0041768:+8412 | Msa1461880:CDS |
| TCCAGTGAGTGTTCCAAGAA+GGG | 0.516170 | tig0041768:-8237 | None:intergenic |
| AATTACATACCCCAGGATCA+AGG | 0.516525 | tig0041768:+8401 | Msa1461880:CDS |
| TTTCTTCAGTTCTATTACCA+TGG | 0.524414 | tig0041768:+8499 | Msa1461880:CDS |
| GTCCAGTGAGTGTTCCAAGA+AGG | 0.526230 | tig0041768:-8238 | None:intergenic |
| TGCTTCACCCACTCCTCCCA+AGG | 0.526357 | tig0041768:+8937 | Msa1461880:CDS |
| CCTCAACATCGTTATGAAGT+TGG | 0.529388 | tig0041768:+8104 | Msa1461880:CDS |
| GGCTGAAGAGGATGAAAAGT+GGG | 0.530470 | tig0041768:-8274 | None:intergenic |
| AAGCCAATGACAATGGTGGC+TGG | 0.533271 | tig0041768:-8308 | None:intergenic |
| GAACAAGAACAGGGCTGAAG+AGG | 0.534164 | tig0041768:-8286 | None:intergenic |
| GGCGAATCCTTGGGAGGAGT+GGG | 0.537228 | tig0041768:-8944 | None:intergenic |
| GCAAGCAGTACACCGCCTAC+AGG | 0.537513 | tig0041768:-8200 | None:intergenic |
| GGCACGGTCCTTGTTCTCAT+GGG | 0.538718 | tig0041768:+8373 | Msa1461880:CDS |
| ACGGCCAAGCTATAAGTGTA+AGG | 0.541399 | tig0041768:-8965 | None:intergenic |
| TTACACTTATAGCTTGGCCG+TGG | 0.548191 | tig0041768:+8967 | Msa1461880:CDS |
| TCTACAGGAGCAACTCGAGT+TGG | 0.549387 | tig0041768:+8427 | Msa1461880:CDS |
| CAACTTCATAACGATGTTGA+GGG | 0.550235 | tig0041768:-8103 | None:intergenic |
| AGGCGAATCCTTGGGAGGAG+TGG | 0.550564 | tig0041768:-8945 | None:intergenic |
| TTTCTTCTACTCATAGTCAT+CGG | 0.564020 | tig0041768:-10108 | None:intergenic |
| CCTTCAGGAGGGGCATTGGA+CGG | 0.564318 | tig0041768:+9854 | Msa1461880:intron |
| AACTCGAGTTGCTCCTGTAG+AGG | 0.565489 | tig0041768:-8425 | None:intergenic |
| CAACATCGTTATGAAGTTGG+TGG | 0.571137 | tig0041768:+8107 | Msa1461880:CDS |
| TAAGTGTAAGGCGAATCCTT+GGG | 0.574212 | tig0041768:-8953 | None:intergenic |
| TTTGAAGGCATAGTTATGAG+AGG | 0.578436 | tig0041768:-10068 | None:intergenic |
| GTTTGTGAGGACTCGACGAG+TGG | 0.581088 | tig0041768:-8582 | None:intergenic |
| TGTAGAGGCCCTTGATCCTG+GGG | 0.582357 | tig0041768:-8410 | None:intergenic |
| TGGTTAGTTCGGAGTTTGTG+AGG | 0.583118 | tig0041768:-8595 | None:intergenic |
| GTTCTGACATTGTTGATGAG+AGG | 0.584108 | tig0041768:-8046 | None:intergenic |
| ATTACATACCCCAGGATCAA+GGG | 0.590997 | tig0041768:+8402 | Msa1461880:CDS |
| GGATTCGAGGTGTTGCAGGT+TGG | 0.596620 | tig0041768:-8615 | None:intergenic |
| CCAACTTCATAACGATGTTG+AGG | 0.597401 | tig0041768:-8104 | None:intergenic |
| GAGTGAAAGAATTGCTGCCA+TGG | 0.598782 | tig0041768:-8516 | None:intergenic |
| AACAATATTTGATTAAACGA+AGG | 0.599669 | tig0041768:+8792 | Msa1461880:CDS |
| TGGAACACTCACTGGACTGG+GGG | 0.600169 | tig0041768:+8244 | Msa1461880:CDS |
| TACTCATAGTCATCGGAACA+TGG | 0.601957 | tig0041768:-10101 | None:intergenic |
| GCTTATGGTGGAGTGGTGGT+CGG | 0.603978 | tig0041768:+8457 | Msa1461880:CDS |
| GGTAAAGAAATGCAGTTGGC+TGG | 0.604963 | tig0041768:+8869 | Msa1461880:CDS |
| ATTCATGACCCATGAGAACA+AGG | 0.605102 | tig0041768:-8381 | None:intergenic |
| GGTCATGAATTACATACCCC+AGG | 0.611661 | tig0041768:+8394 | Msa1461880:CDS |
| GTAATTACCGGCCTTCCTGT+AGG | 0.612160 | tig0041768:+8185 | Msa1461880:CDS |
| TACACCGCCTACAGGAAGGC+CGG | 0.615441 | tig0041768:-8192 | None:intergenic |
| GGGCTGAAGAGGATGAAAAG+TGG | 0.618573 | tig0041768:-8275 | None:intergenic |
| AACAGCTTATGGTGGAGTGG+TGG | 0.622508 | tig0041768:+8453 | Msa1461880:CDS |
| GACAGCAAAGCCAATGACAA+TGG | 0.626525 | tig0041768:-8315 | None:intergenic |
| CCTTCTAAGAGATTTATCCA+CGG | 0.626878 | tig0041768:-8984 | None:intergenic |
| CCAATCAGTGTCGCCACATG+CGG | 0.627529 | tig0041768:-8824 | None:intergenic |
| AAGGACGTTGATGCCGCATG+TGG | 0.632685 | tig0041768:+8811 | Msa1461880:CDS |
| TGGTGGAGTGGTGGTCGGAG+TGG | 0.638660 | tig0041768:+8462 | Msa1461880:CDS |
| GCAGTACACCGCCTACAGGA+AGG | 0.642229 | tig0041768:-8196 | None:intergenic |
| TTGGAACACTCACTGGACTG+GGG | 0.646592 | tig0041768:+8243 | Msa1461880:CDS |
| ACGATGTTGAGGGGTAACAC+TGG | 0.650096 | tig0041768:-8093 | None:intergenic |
| GTGTAAGGCGAATCCTTGGG+AGG | 0.670081 | tig0041768:-8950 | None:intergenic |
| AACTTCATAACGATGTTGAG+GGG | 0.671058 | tig0041768:-8102 | None:intergenic |
| AGCAAAGCCAATGACAATGG+TGG | 0.674104 | tig0041768:-8312 | None:intergenic |
| TGATGGTAAAGAAATGCAGT+TGG | 0.686968 | tig0041768:+8865 | Msa1461880:CDS |
| TGGTGGCTGGAACAAGAACA+GGG | 0.708517 | tig0041768:-8295 | None:intergenic |
| ATTACCGGCCTTCCTGTAGG+CGG | 0.711293 | tig0041768:+8188 | Msa1461880:CDS |
| CTGGTATCGTAACAGCGTGG+TGG | 0.712087 | tig0041768:-8074 | None:intergenic |
| ACACTGGTATCGTAACAGCG+TGG | 0.804350 | tig0041768:-8077 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCAAATATTGTTTCATA+AGG | - | tig0041768:8787-8806 | None:intergenic | 15.0% |
| !! | TAATCAAATATTGTTTCATA+AGG | - | tig0041768:8787-8806 | None:intergenic | 15.0% |
| !! | AACATGTTGATATAACATTT+CGG | - | tig0041768:8758-8777 | None:intergenic | 20.0% |
| !! | AACAATATTTGATTAAACGA+AGG | + | tig0041768:8792-8811 | Msa1461880:CDS | 20.0% |
| !!! | GAGATTTGTTTTGATAAAAA+TGG | + | tig0041768:8899-8918 | Msa1461880:CDS | 20.0% |
| !! | TTTCGATTATTCAAAGATTA+AGG | + | tig0041768:9165-9184 | Msa1461880:intron | 20.0% |
| !! | AGCTTAATTATTTAAATTGC+AGG | - | tig0041768:9677-9696 | None:intergenic | 20.0% |
| !! | AACATGTTGATATAACATTT+CGG | - | tig0041768:8758-8777 | None:intergenic | 20.0% |
| !! | AACAATATTTGATTAAACGA+AGG | + | tig0041768:8792-8811 | Msa1461880:CDS | 20.0% |
| !!! | GAGATTTGTTTTGATAAAAA+TGG | + | tig0041768:8899-8918 | Msa1461880:CDS | 20.0% |
| !! | TTTCGATTATTCAAAGATTA+AGG | + | tig0041768:9165-9184 | Msa1461880:intron | 20.0% |
| !! | AGCTTAATTATTTAAATTGC+AGG | - | tig0041768:9677-9696 | None:intergenic | 20.0% |
| ! | ACATGTTGATATAACATTTC+GGG | - | tig0041768:8757-8776 | None:intergenic | 25.0% |
| !! | TTGGTCAAATTAGTTCTTTA+TGG | - | tig0041768:9082-9101 | None:intergenic | 25.0% |
| ! | ATAAAGAACTAATTTGACCA+AGG | + | tig0041768:9081-9100 | Msa1461880:intron | 25.0% |
| ! | TAAAGAACTAATTTGACCAA+GGG | + | tig0041768:9082-9101 | Msa1461880:intron | 25.0% |
| ! | TATTCTTGGTCTAATTTGAT+TGG | + | tig0041768:9111-9130 | Msa1461880:intron | 25.0% |
| ! | TCAAAAATGTTTCAGTTTGT+AGG | - | tig0041768:9231-9250 | None:intergenic | 25.0% |
| ! | AATAAGCTAAAATCAGCTTA+TGG | - | tig0041768:9294-9313 | None:intergenic | 25.0% |
| ! | TTCACATATAGATACACTTT+GGG | - | tig0041768:9448-9467 | None:intergenic | 25.0% |
| ! | TTTCACATATAGATACACTT+TGG | - | tig0041768:9449-9468 | None:intergenic | 25.0% |
| ! | AGATTATGTAGGATATTTCT+TGG | + | tig0041768:9542-9561 | Msa1461880:intron | 25.0% |
| ! | GATTATGTAGGATATTTCTT+GGG | + | tig0041768:9543-9562 | Msa1461880:intron | 25.0% |
| ! | GGTTACTTAAATCTTAAACT+TGG | - | tig0041768:9701-9720 | None:intergenic | 25.0% |
| ! | ACATGTTGATATAACATTTC+GGG | - | tig0041768:8757-8776 | None:intergenic | 25.0% |
| !! | TTGGTCAAATTAGTTCTTTA+TGG | - | tig0041768:9082-9101 | None:intergenic | 25.0% |
| ! | ATAAAGAACTAATTTGACCA+AGG | + | tig0041768:9081-9100 | Msa1461880:intron | 25.0% |
| ! | TAAAGAACTAATTTGACCAA+GGG | + | tig0041768:9082-9101 | Msa1461880:intron | 25.0% |
| ! | TATTCTTGGTCTAATTTGAT+TGG | + | tig0041768:9111-9130 | Msa1461880:intron | 25.0% |
| ! | TCAAAAATGTTTCAGTTTGT+AGG | - | tig0041768:9231-9250 | None:intergenic | 25.0% |
| ! | AATAAGCTAAAATCAGCTTA+TGG | - | tig0041768:9294-9313 | None:intergenic | 25.0% |
| ! | TTCACATATAGATACACTTT+GGG | - | tig0041768:9448-9467 | None:intergenic | 25.0% |
| ! | TTTCACATATAGATACACTT+TGG | - | tig0041768:9449-9468 | None:intergenic | 25.0% |
| ! | AGATTATGTAGGATATTTCT+TGG | + | tig0041768:9542-9561 | Msa1461880:intron | 25.0% |
| ! | GATTATGTAGGATATTTCTT+GGG | + | tig0041768:9543-9562 | Msa1461880:intron | 25.0% |
| ! | GGTTACTTAAATCTTAAACT+TGG | - | tig0041768:9701-9720 | None:intergenic | 25.0% |
| TTTCTTCAGTTCTATTACCA+TGG | + | tig0041768:8499-8518 | Msa1461880:CDS | 30.0% | |
| ! | TGTTGAACCAATGATTTTGA+GGG | - | tig0041768:8553-8572 | None:intergenic | 30.0% |
| ! | ATGTTGAACCAATGATTTTG+AGG | - | tig0041768:8554-8573 | None:intergenic | 30.0% |
| AACCAAAATTGAACAGGATT+TGG | - | tig0041768:8660-8679 | None:intergenic | 30.0% | |
| AAATGCAAATTTCAGCAACT+TGG | - | tig0041768:9029-9048 | None:intergenic | 30.0% | |
| TGCTGAAATTTGCATTTCTT+TGG | + | tig0041768:9032-9051 | Msa1461880:intron | 30.0% | |
| GATTAAGGCTGTATTTAGAT+TGG | + | tig0041768:9180-9199 | Msa1461880:intron | 30.0% | |
| ATAATAGCAACGAGAAAATG+TGG | - | tig0041768:9378-9397 | None:intergenic | 30.0% | |
| ! | GATATTTCTTGGGTGAATTT+TGG | + | tig0041768:9553-9572 | Msa1461880:intron | 30.0% |
| !! | TCATCAGTAGCAATTTTAGT+TGG | + | tig0041768:9646-9665 | Msa1461880:intron | 30.0% |
| !!! | CATCAGTAGCAATTTTAGTT+GGG | + | tig0041768:9647-9666 | Msa1461880:intron | 30.0% |
| TGTTTGAAAATGTGAGCTAT+GGG | - | tig0041768:9749-9768 | None:intergenic | 30.0% | |
| TCTGATATTTAATTCCCTTC+AGG | + | tig0041768:9839-9858 | Msa1461880:intron | 30.0% | |
| ATATTTAATTCCCTTCAGGA+GGG | + | tig0041768:9843-9862 | Msa1461880:intron | 30.0% | |
| ! | GCTTTTGTATACATGTTAAG+TGG | - | tig0041768:9967-9986 | None:intergenic | 30.0% |
| TTTCTTCTACTCATAGTCAT+CGG | - | tig0041768:10111-10130 | None:intergenic | 30.0% | |
| TTTCTTCAGTTCTATTACCA+TGG | + | tig0041768:8499-8518 | Msa1461880:CDS | 30.0% | |
| ! | TGTTGAACCAATGATTTTGA+GGG | - | tig0041768:8553-8572 | None:intergenic | 30.0% |
| ! | ATGTTGAACCAATGATTTTG+AGG | - | tig0041768:8554-8573 | None:intergenic | 30.0% |
| AACCAAAATTGAACAGGATT+TGG | - | tig0041768:8660-8679 | None:intergenic | 30.0% | |
| AAATGCAAATTTCAGCAACT+TGG | - | tig0041768:9029-9048 | None:intergenic | 30.0% | |
| TGCTGAAATTTGCATTTCTT+TGG | + | tig0041768:9032-9051 | Msa1461880:intron | 30.0% | |
| GATTAAGGCTGTATTTAGAT+TGG | + | tig0041768:9180-9199 | Msa1461880:intron | 30.0% | |
| ATAATAGCAACGAGAAAATG+TGG | - | tig0041768:9378-9397 | None:intergenic | 30.0% | |
| ! | GATATTTCTTGGGTGAATTT+TGG | + | tig0041768:9553-9572 | Msa1461880:intron | 30.0% |
| !! | TCATCAGTAGCAATTTTAGT+TGG | + | tig0041768:9646-9665 | Msa1461880:intron | 30.0% |
| !!! | CATCAGTAGCAATTTTAGTT+GGG | + | tig0041768:9647-9666 | Msa1461880:intron | 30.0% |
| TGTTTGAAAATGTGAGCTAT+GGG | - | tig0041768:9749-9768 | None:intergenic | 30.0% | |
| TCTGATATTTAATTCCCTTC+AGG | + | tig0041768:9839-9858 | Msa1461880:intron | 30.0% | |
| ATATTTAATTCCCTTCAGGA+GGG | + | tig0041768:9843-9862 | Msa1461880:intron | 30.0% | |
| ! | GCTTTTGTATACATGTTAAG+TGG | - | tig0041768:9967-9986 | None:intergenic | 30.0% |
| TTTCTTCTACTCATAGTCAT+CGG | - | tig0041768:10111-10130 | None:intergenic | 30.0% | |
| AACTTCATAACGATGTTGAG+GGG | - | tig0041768:8105-8124 | None:intergenic | 35.0% | |
| CAACTTCATAACGATGTTGA+GGG | - | tig0041768:8106-8125 | None:intergenic | 35.0% | |
| !!! | ATTTGGTGTTTTGGAAGTAG+AGG | - | tig0041768:8643-8662 | None:intergenic | 35.0% |
| !!! | TTGAACAGGATTTGGTGTTT+TGG | - | tig0041768:8652-8671 | None:intergenic | 35.0% |
| ! | CACCAAATCCTGTTCAATTT+TGG | + | tig0041768:8655-8674 | Msa1461880:CDS | 35.0% |
| TACTCGAACCAAAATTGAAC+AGG | - | tig0041768:8666-8685 | None:intergenic | 35.0% | |
| !! | ACACTGATTGGGTTTTATAG+AGG | + | tig0041768:8836-8855 | Msa1461880:CDS | 35.0% |
| ! | TTTTATAGAGGAGTTGCTGA+TGG | + | tig0041768:8848-8867 | Msa1461880:CDS | 35.0% |
| TGATGGTAAAGAAATGCAGT+TGG | + | tig0041768:8865-8884 | Msa1461880:CDS | 35.0% | |
| ! | CCTTCTAAGAGATTTATCCA+CGG | - | tig0041768:8987-9006 | None:intergenic | 35.0% |
| ACCAAGGGAATACATATTCT+TGG | + | tig0041768:9097-9116 | Msa1461880:intron | 35.0% | |
| ACCAAGAATATGTATTCCCT+TGG | - | tig0041768:9101-9120 | None:intergenic | 35.0% | |
| ATTGGCTATATGCATATCCA+GGG | + | tig0041768:9129-9148 | Msa1461880:intron | 35.0% | |
| TGTGTTCATAAACTATCCCT+GGG | - | tig0041768:9327-9346 | None:intergenic | 35.0% | |
| TTGTGTTCATAAACTATCCC+TGG | - | tig0041768:9328-9347 | None:intergenic | 35.0% | |
| AAAGCTAGAACTACTAGATG+CGG | + | tig0041768:9466-9485 | Msa1461880:intron | 35.0% | |
| ACTCTTCTGCTAGATTATGT+AGG | + | tig0041768:9531-9550 | Msa1461880:intron | 35.0% | |
| ! | TCGCGACGAGAATATATTTT+CGG | - | tig0041768:9722-9741 | None:intergenic | 35.0% |
| GTGTTTGAAAATGTGAGCTA+TGG | - | tig0041768:9750-9769 | None:intergenic | 35.0% | |
| ! | AGCTCACATTTTCAAACACA+TGG | + | tig0041768:9751-9770 | Msa1461880:intron | 35.0% |
| GATATTTAATTCCCTTCAGG+AGG | + | tig0041768:9842-9861 | Msa1461880:intron | 35.0% | |
| TATTTAATTCCCTTCAGGAG+GGG | + | tig0041768:9844-9863 | Msa1461880:intron | 35.0% | |
| ! | TTTGAAGGCATAGTTATGAG+AGG | - | tig0041768:10071-10090 | None:intergenic | 35.0% |
| AACTTCATAACGATGTTGAG+GGG | - | tig0041768:8105-8124 | None:intergenic | 35.0% | |
| CAACTTCATAACGATGTTGA+GGG | - | tig0041768:8106-8125 | None:intergenic | 35.0% | |
| !!! | ATTTGGTGTTTTGGAAGTAG+AGG | - | tig0041768:8643-8662 | None:intergenic | 35.0% |
| !!! | TTGAACAGGATTTGGTGTTT+TGG | - | tig0041768:8652-8671 | None:intergenic | 35.0% |
| ! | CACCAAATCCTGTTCAATTT+TGG | + | tig0041768:8655-8674 | Msa1461880:CDS | 35.0% |
| TACTCGAACCAAAATTGAAC+AGG | - | tig0041768:8666-8685 | None:intergenic | 35.0% | |
| !! | ACACTGATTGGGTTTTATAG+AGG | + | tig0041768:8836-8855 | Msa1461880:CDS | 35.0% |
| ! | TTTTATAGAGGAGTTGCTGA+TGG | + | tig0041768:8848-8867 | Msa1461880:CDS | 35.0% |
| TGATGGTAAAGAAATGCAGT+TGG | + | tig0041768:8865-8884 | Msa1461880:CDS | 35.0% | |
| ! | CCTTCTAAGAGATTTATCCA+CGG | - | tig0041768:8987-9006 | None:intergenic | 35.0% |
| ACCAAGGGAATACATATTCT+TGG | + | tig0041768:9097-9116 | Msa1461880:intron | 35.0% | |
| ACCAAGAATATGTATTCCCT+TGG | - | tig0041768:9101-9120 | None:intergenic | 35.0% | |
| ATTGGCTATATGCATATCCA+GGG | + | tig0041768:9129-9148 | Msa1461880:intron | 35.0% | |
| TGTGTTCATAAACTATCCCT+GGG | - | tig0041768:9327-9346 | None:intergenic | 35.0% | |
| TTGTGTTCATAAACTATCCC+TGG | - | tig0041768:9328-9347 | None:intergenic | 35.0% | |
| AAAGCTAGAACTACTAGATG+CGG | + | tig0041768:9466-9485 | Msa1461880:intron | 35.0% | |
| ACTCTTCTGCTAGATTATGT+AGG | + | tig0041768:9531-9550 | Msa1461880:intron | 35.0% | |
| ! | TCGCGACGAGAATATATTTT+CGG | - | tig0041768:9722-9741 | None:intergenic | 35.0% |
| GTGTTTGAAAATGTGAGCTA+TGG | - | tig0041768:9750-9769 | None:intergenic | 35.0% | |
| ! | AGCTCACATTTTCAAACACA+TGG | + | tig0041768:9751-9770 | Msa1461880:intron | 35.0% |
| GATATTTAATTCCCTTCAGG+AGG | + | tig0041768:9842-9861 | Msa1461880:intron | 35.0% | |
| TATTTAATTCCCTTCAGGAG+GGG | + | tig0041768:9844-9863 | Msa1461880:intron | 35.0% | |
| ! | TTTGAAGGCATAGTTATGAG+AGG | - | tig0041768:10071-10090 | None:intergenic | 35.0% |
| ! | GTTCTGACATTGTTGATGAG+AGG | - | tig0041768:8049-8068 | None:intergenic | 40.0% |
| CCAACTTCATAACGATGTTG+AGG | - | tig0041768:8107-8126 | None:intergenic | 40.0% | |
| CCTCAACATCGTTATGAAGT+TGG | + | tig0041768:8104-8123 | Msa1461880:CDS | 40.0% | |
| CAACATCGTTATGAAGTTGG+TGG | + | tig0041768:8107-8126 | Msa1461880:CDS | 40.0% | |
| ATTCATGACCCATGAGAACA+AGG | - | tig0041768:8384-8403 | None:intergenic | 40.0% | |
| AATTACATACCCCAGGATCA+AGG | + | tig0041768:8401-8420 | Msa1461880:CDS | 40.0% | |
| ATTACATACCCCAGGATCAA+GGG | + | tig0041768:8402-8421 | Msa1461880:CDS | 40.0% | |
| ! | CGAGTTGGAAAAACAGCTTA+TGG | + | tig0041768:8442-8461 | Msa1461880:CDS | 40.0% |
| GTTGGAAAAACAGCTTATGG+TGG | + | tig0041768:8445-8464 | Msa1461880:CDS | 40.0% | |
| ! | AAAAACAGCTTATGGTGGAG+TGG | + | tig0041768:8450-8469 | Msa1461880:CDS | 40.0% |
| ATTCTTTCACTCTCCTCCTT+AGG | + | tig0041768:8527-8546 | Msa1461880:CDS | 40.0% | |
| CTGCGAGTAAACAGACTATT+GGG | - | tig0041768:8709-8728 | None:intergenic | 40.0% | |
| TCTGCGAGTAAACAGACTAT+TGG | - | tig0041768:8710-8729 | None:intergenic | 40.0% | |
| TAAGTGTAAGGCGAATCCTT+GGG | - | tig0041768:8956-8975 | None:intergenic | 40.0% | |
| ATAAGTGTAAGGCGAATCCT+TGG | - | tig0041768:8957-8976 | None:intergenic | 40.0% | |
| TTCGCCTTACACTTATAGCT+TGG | + | tig0041768:8961-8980 | Msa1461880:CDS | 40.0% | |
| CCGTGGATAAATCTCTTAGA+AGG | + | tig0041768:8984-9003 | Msa1461880:CDS | 40.0% | |
| ! | GATTGGCTATATGCATATCC+AGG | + | tig0041768:9128-9147 | Msa1461880:intron | 40.0% |
| TTGGCTATATGCATATCCAG+GGG | + | tig0041768:9130-9149 | Msa1461880:intron | 40.0% | |
| CTTATTCCAACAAACTCCCA+GGG | + | tig0041768:9308-9327 | Msa1461880:intron | 40.0% | |
| AAGCTAGAACTACTAGATGC+GGG | + | tig0041768:9467-9486 | Msa1461880:intron | 40.0% | |
| ACTACTAGATGCGGGTAAAA+TGG | + | tig0041768:9475-9494 | Msa1461880:intron | 40.0% | |
| ! | CATTGGACGGCATCTTTTAA+AGG | + | tig0041768:9867-9886 | Msa1461880:CDS | 40.0% |
| !! | GCATCTTTTAAAGGCAAGTG+AGG | + | tig0041768:9876-9895 | Msa1461880:CDS | 40.0% |
| ! | CAAGTGAGGAACTGATTTCT+CGG | + | tig0041768:9890-9909 | Msa1461880:CDS | 40.0% |
| !!! | CATGGCACATCTGTTTTTGA+AGG | - | tig0041768:10086-10105 | None:intergenic | 40.0% |
| TACTCATAGTCATCGGAACA+TGG | - | tig0041768:10104-10123 | None:intergenic | 40.0% | |
| ! | GTTCTGACATTGTTGATGAG+AGG | - | tig0041768:8049-8068 | None:intergenic | 40.0% |
| CCAACTTCATAACGATGTTG+AGG | - | tig0041768:8107-8126 | None:intergenic | 40.0% | |
| CCTCAACATCGTTATGAAGT+TGG | + | tig0041768:8104-8123 | Msa1461880:CDS | 40.0% | |
| CAACATCGTTATGAAGTTGG+TGG | + | tig0041768:8107-8126 | Msa1461880:CDS | 40.0% | |
| ATTCATGACCCATGAGAACA+AGG | - | tig0041768:8384-8403 | None:intergenic | 40.0% | |
| AATTACATACCCCAGGATCA+AGG | + | tig0041768:8401-8420 | Msa1461880:CDS | 40.0% | |
| ATTACATACCCCAGGATCAA+GGG | + | tig0041768:8402-8421 | Msa1461880:CDS | 40.0% | |
| ! | CGAGTTGGAAAAACAGCTTA+TGG | + | tig0041768:8442-8461 | Msa1461880:CDS | 40.0% |
| GTTGGAAAAACAGCTTATGG+TGG | + | tig0041768:8445-8464 | Msa1461880:CDS | 40.0% | |
| ! | AAAAACAGCTTATGGTGGAG+TGG | + | tig0041768:8450-8469 | Msa1461880:CDS | 40.0% |
| ATTCTTTCACTCTCCTCCTT+AGG | + | tig0041768:8527-8546 | Msa1461880:CDS | 40.0% | |
| CTGCGAGTAAACAGACTATT+GGG | - | tig0041768:8709-8728 | None:intergenic | 40.0% | |
| TCTGCGAGTAAACAGACTAT+TGG | - | tig0041768:8710-8729 | None:intergenic | 40.0% | |
| TAAGTGTAAGGCGAATCCTT+GGG | - | tig0041768:8956-8975 | None:intergenic | 40.0% | |
| ATAAGTGTAAGGCGAATCCT+TGG | - | tig0041768:8957-8976 | None:intergenic | 40.0% | |
| TTCGCCTTACACTTATAGCT+TGG | + | tig0041768:8961-8980 | Msa1461880:CDS | 40.0% | |
| CCGTGGATAAATCTCTTAGA+AGG | + | tig0041768:8984-9003 | Msa1461880:CDS | 40.0% | |
| ! | GATTGGCTATATGCATATCC+AGG | + | tig0041768:9128-9147 | Msa1461880:intron | 40.0% |
| TTGGCTATATGCATATCCAG+GGG | + | tig0041768:9130-9149 | Msa1461880:intron | 40.0% | |
| CTTATTCCAACAAACTCCCA+GGG | + | tig0041768:9308-9327 | Msa1461880:intron | 40.0% | |
| AAGCTAGAACTACTAGATGC+GGG | + | tig0041768:9467-9486 | Msa1461880:intron | 40.0% | |
| ACTACTAGATGCGGGTAAAA+TGG | + | tig0041768:9475-9494 | Msa1461880:intron | 40.0% | |
| ! | CATTGGACGGCATCTTTTAA+AGG | + | tig0041768:9867-9886 | Msa1461880:CDS | 40.0% |
| !! | GCATCTTTTAAAGGCAAGTG+AGG | + | tig0041768:9876-9895 | Msa1461880:CDS | 40.0% |
| ! | CAAGTGAGGAACTGATTTCT+CGG | + | tig0041768:9890-9909 | Msa1461880:CDS | 40.0% |
| !!! | CATGGCACATCTGTTTTTGA+AGG | - | tig0041768:10086-10105 | None:intergenic | 40.0% |
| TACTCATAGTCATCGGAACA+TGG | - | tig0041768:10104-10123 | None:intergenic | 40.0% | |
| GCAAGCACTTGAGAAGTTGA+TGG | - | tig0041768:8164-8183 | None:intergenic | 45.0% | |
| CAAGTGCTTGCCGTAATTAC+CGG | + | tig0041768:8173-8192 | Msa1461880:CDS | 45.0% | |
| TACAGGAAGGCCGGTAATTA+CGG | - | tig0041768:8186-8205 | None:intergenic | 45.0% | |
| TCCAGTGAGTGTTCCAAGAA+GGG | - | tig0041768:8240-8259 | None:intergenic | 45.0% | |
| GGCTGAAGAGGATGAAAAGT+GGG | - | tig0041768:8277-8296 | None:intergenic | 45.0% | |
| AGCAAAGCCAATGACAATGG+TGG | - | tig0041768:8315-8334 | None:intergenic | 45.0% | |
| GACAGCAAAGCCAATGACAA+TGG | - | tig0041768:8318-8337 | None:intergenic | 45.0% | |
| !! | CTTTGCTGTCGCTGTCTTTT+TGG | + | tig0041768:8328-8347 | Msa1461880:CDS | 45.0% |
| !! | TTTTTGGCGTCTGCAGCTTT+TGG | + | tig0041768:8344-8363 | Msa1461880:CDS | 45.0% |
| ! | TTTTGGCGTCTGCAGCTTTT+GGG | + | tig0041768:8345-8364 | Msa1461880:CDS | 45.0% |
| GGTCATGAATTACATACCCC+AGG | + | tig0041768:8394-8413 | Msa1461880:CDS | 45.0% | |
| GAGTGAAAGAATTGCTGCCA+TGG | - | tig0041768:8519-8538 | None:intergenic | 45.0% | |
| !! | ATGATTTTGAGGGCCTAAGG+AGG | - | tig0041768:8543-8562 | None:intergenic | 45.0% |
| !! | CCAATGATTTTGAGGGCCTA+AGG | - | tig0041768:8546-8565 | None:intergenic | 45.0% |
| CCTTAGGCCCTCAAAATCAT+TGG | + | tig0041768:8543-8562 | Msa1461880:CDS | 45.0% | |
| ! | TGGTTAGTTCGGAGTTTGTG+AGG | - | tig0041768:8598-8617 | None:intergenic | 45.0% |
| !! | GTGTTGCAGGTTGGTTAGTT+CGG | - | tig0041768:8609-8628 | None:intergenic | 45.0% |
| !!! | GGTGTTTTGGAAGTAGAGGA+AGG | - | tig0041768:8639-8658 | None:intergenic | 45.0% |
| GGTAAAGAAATGCAGTTGGC+TGG | + | tig0041768:8869-8888 | Msa1461880:CDS | 45.0% | |
| ACGGCCAAGCTATAAGTGTA+AGG | - | tig0041768:8968-8987 | None:intergenic | 45.0% | |
| TTACACTTATAGCTTGGCCG+TGG | + | tig0041768:8967-8986 | Msa1461880:CDS | 45.0% | |
| GCTTATTCCAACAAACTCCC+AGG | + | tig0041768:9307-9326 | Msa1461880:intron | 45.0% | |
| AACTATCCCTGGGAGTTTGT+TGG | - | tig0041768:9317-9336 | None:intergenic | 45.0% | |
| GCAAGCACTTGAGAAGTTGA+TGG | - | tig0041768:8164-8183 | None:intergenic | 45.0% | |
| CAAGTGCTTGCCGTAATTAC+CGG | + | tig0041768:8173-8192 | Msa1461880:CDS | 45.0% | |
| TACAGGAAGGCCGGTAATTA+CGG | - | tig0041768:8186-8205 | None:intergenic | 45.0% | |
| TCCAGTGAGTGTTCCAAGAA+GGG | - | tig0041768:8240-8259 | None:intergenic | 45.0% | |
| GGCTGAAGAGGATGAAAAGT+GGG | - | tig0041768:8277-8296 | None:intergenic | 45.0% | |
| AGCAAAGCCAATGACAATGG+TGG | - | tig0041768:8315-8334 | None:intergenic | 45.0% | |
| GACAGCAAAGCCAATGACAA+TGG | - | tig0041768:8318-8337 | None:intergenic | 45.0% | |
| !! | CTTTGCTGTCGCTGTCTTTT+TGG | + | tig0041768:8328-8347 | Msa1461880:CDS | 45.0% |
| !! | TTTTTGGCGTCTGCAGCTTT+TGG | + | tig0041768:8344-8363 | Msa1461880:CDS | 45.0% |
| ! | TTTTGGCGTCTGCAGCTTTT+GGG | + | tig0041768:8345-8364 | Msa1461880:CDS | 45.0% |
| GGTCATGAATTACATACCCC+AGG | + | tig0041768:8394-8413 | Msa1461880:CDS | 45.0% | |
| GAGTGAAAGAATTGCTGCCA+TGG | - | tig0041768:8519-8538 | None:intergenic | 45.0% | |
| !! | ATGATTTTGAGGGCCTAAGG+AGG | - | tig0041768:8543-8562 | None:intergenic | 45.0% |
| !! | CCAATGATTTTGAGGGCCTA+AGG | - | tig0041768:8546-8565 | None:intergenic | 45.0% |
| CCTTAGGCCCTCAAAATCAT+TGG | + | tig0041768:8543-8562 | Msa1461880:CDS | 45.0% | |
| ! | TGGTTAGTTCGGAGTTTGTG+AGG | - | tig0041768:8598-8617 | None:intergenic | 45.0% |
| !! | GTGTTGCAGGTTGGTTAGTT+CGG | - | tig0041768:8609-8628 | None:intergenic | 45.0% |
| !!! | GGTGTTTTGGAAGTAGAGGA+AGG | - | tig0041768:8639-8658 | None:intergenic | 45.0% |
| GGTAAAGAAATGCAGTTGGC+TGG | + | tig0041768:8869-8888 | Msa1461880:CDS | 45.0% | |
| ACGGCCAAGCTATAAGTGTA+AGG | - | tig0041768:8968-8987 | None:intergenic | 45.0% | |
| TTACACTTATAGCTTGGCCG+TGG | + | tig0041768:8967-8986 | Msa1461880:CDS | 45.0% | |
| GCTTATTCCAACAAACTCCC+AGG | + | tig0041768:9307-9326 | Msa1461880:intron | 45.0% | |
| AACTATCCCTGGGAGTTTGT+TGG | - | tig0041768:9317-9336 | None:intergenic | 45.0% | |
| ACACTGGTATCGTAACAGCG+TGG | - | tig0041768:8080-8099 | None:intergenic | 50.0% | |
| ACGATGTTGAGGGGTAACAC+TGG | - | tig0041768:8096-8115 | None:intergenic | 50.0% | |
| GTAATTACCGGCCTTCCTGT+AGG | + | tig0041768:8185-8204 | Msa1461880:CDS | 50.0% | |
| TCCCTTCTTGGAACACTCAC+TGG | + | tig0041768:8236-8255 | Msa1461880:CDS | 50.0% | |
| GTCCAGTGAGTGTTCCAAGA+AGG | - | tig0041768:8241-8260 | None:intergenic | 50.0% | |
| TCTTGGAACACTCACTGGAC+TGG | + | tig0041768:8241-8260 | Msa1461880:CDS | 50.0% | |
| CTTGGAACACTCACTGGACT+GGG | + | tig0041768:8242-8261 | Msa1461880:CDS | 50.0% | |
| TTGGAACACTCACTGGACTG+GGG | + | tig0041768:8243-8262 | Msa1461880:CDS | 50.0% | |
| GGGCTGAAGAGGATGAAAAG+TGG | - | tig0041768:8278-8297 | None:intergenic | 50.0% | |
| GAACAAGAACAGGGCTGAAG+AGG | - | tig0041768:8289-8308 | None:intergenic | 50.0% | |
| TGGTGGCTGGAACAAGAACA+GGG | - | tig0041768:8298-8317 | None:intergenic | 50.0% | |
| ATGGTGGCTGGAACAAGAAC+AGG | - | tig0041768:8299-8318 | None:intergenic | 50.0% | |
| GTTCCAGCCACCATTGTCAT+TGG | + | tig0041768:8305-8324 | Msa1461880:CDS | 50.0% | |
| AAGCCAATGACAATGGTGGC+TGG | - | tig0041768:8311-8330 | None:intergenic | 50.0% | |
| ! | AACTCGAGTTGCTCCTGTAG+AGG | - | tig0041768:8428-8447 | None:intergenic | 50.0% |
| TCTACAGGAGCAACTCGAGT+TGG | + | tig0041768:8427-8446 | Msa1461880:CDS | 50.0% | |
| ! | AACAGCTTATGGTGGAGTGG+TGG | + | tig0041768:8453-8472 | Msa1461880:CDS | 50.0% |
| GGAAGTAGAGGAAGGATTCG+AGG | - | tig0041768:8631-8650 | None:intergenic | 50.0% | |
| GAAACTACACATTCAGCCCC+TGG | - | tig0041768:9149-9168 | None:intergenic | 50.0% | |
| TTCGTCTCTGCAACATCAGC+AGG | - | tig0041768:10025-10044 | None:intergenic | 50.0% | |
| ACACTGGTATCGTAACAGCG+TGG | - | tig0041768:8080-8099 | None:intergenic | 50.0% | |
| ACGATGTTGAGGGGTAACAC+TGG | - | tig0041768:8096-8115 | None:intergenic | 50.0% | |
| GTAATTACCGGCCTTCCTGT+AGG | + | tig0041768:8185-8204 | Msa1461880:CDS | 50.0% | |
| TCCCTTCTTGGAACACTCAC+TGG | + | tig0041768:8236-8255 | Msa1461880:CDS | 50.0% | |
| GTCCAGTGAGTGTTCCAAGA+AGG | - | tig0041768:8241-8260 | None:intergenic | 50.0% | |
| TCTTGGAACACTCACTGGAC+TGG | + | tig0041768:8241-8260 | Msa1461880:CDS | 50.0% | |
| CTTGGAACACTCACTGGACT+GGG | + | tig0041768:8242-8261 | Msa1461880:CDS | 50.0% | |
| TTGGAACACTCACTGGACTG+GGG | + | tig0041768:8243-8262 | Msa1461880:CDS | 50.0% | |
| GGGCTGAAGAGGATGAAAAG+TGG | - | tig0041768:8278-8297 | None:intergenic | 50.0% | |
| GAACAAGAACAGGGCTGAAG+AGG | - | tig0041768:8289-8308 | None:intergenic | 50.0% | |
| TGGTGGCTGGAACAAGAACA+GGG | - | tig0041768:8298-8317 | None:intergenic | 50.0% | |
| ATGGTGGCTGGAACAAGAAC+AGG | - | tig0041768:8299-8318 | None:intergenic | 50.0% | |
| GTTCCAGCCACCATTGTCAT+TGG | + | tig0041768:8305-8324 | Msa1461880:CDS | 50.0% | |
| AAGCCAATGACAATGGTGGC+TGG | - | tig0041768:8311-8330 | None:intergenic | 50.0% | |
| ! | AACTCGAGTTGCTCCTGTAG+AGG | - | tig0041768:8428-8447 | None:intergenic | 50.0% |
| TCTACAGGAGCAACTCGAGT+TGG | + | tig0041768:8427-8446 | Msa1461880:CDS | 50.0% | |
| ! | AACAGCTTATGGTGGAGTGG+TGG | + | tig0041768:8453-8472 | Msa1461880:CDS | 50.0% |
| GGAAGTAGAGGAAGGATTCG+AGG | - | tig0041768:8631-8650 | None:intergenic | 50.0% | |
| GAAACTACACATTCAGCCCC+TGG | - | tig0041768:9149-9168 | None:intergenic | 50.0% | |
| TTCGTCTCTGCAACATCAGC+AGG | - | tig0041768:10025-10044 | None:intergenic | 50.0% | |
| CTGGTATCGTAACAGCGTGG+TGG | - | tig0041768:8077-8096 | None:intergenic | 55.0% | |
| ATTACCGGCCTTCCTGTAGG+CGG | + | tig0041768:8188-8207 | Msa1461880:CDS | 55.0% | |
| GGTGTACTGCTTGCACTTGC+TGG | + | tig0041768:8209-8228 | Msa1461880:CDS | 55.0% | |
| CTTGCTGGACTCTCCCTTCT+TGG | + | tig0041768:8224-8243 | Msa1461880:CDS | 55.0% | |
| ! | TGGAACACTCACTGGACTGG+GGG | + | tig0041768:8244-8263 | Msa1461880:CDS | 55.0% |
| ! | GTCTGCAGCTTTTGGGCTGA+TGG | + | tig0041768:8352-8371 | Msa1461880:CDS | 55.0% |
| ! | CAGCTTTTGGGCTGATGGCA+CGG | + | tig0041768:8357-8376 | Msa1461880:CDS | 55.0% |
| TGGCACGGTCCTTGTTCTCA+TGG | + | tig0041768:8372-8391 | Msa1461880:CDS | 55.0% | |
| GGCACGGTCCTTGTTCTCAT+GGG | + | tig0041768:8373-8392 | Msa1461880:CDS | 55.0% | |
| TGTAGAGGCCCTTGATCCTG+GGG | - | tig0041768:8413-8432 | None:intergenic | 55.0% | |
| CTGTAGAGGCCCTTGATCCT+GGG | - | tig0041768:8414-8433 | None:intergenic | 55.0% | |
| ! | GCTTATGGTGGAGTGGTGGT+CGG | + | tig0041768:8457-8476 | Msa1461880:CDS | 55.0% |
| ! | GAGGACTCGACGAGTGGTTT+TGG | - | tig0041768:8579-8598 | None:intergenic | 55.0% |
| GTTTGTGAGGACTCGACGAG+TGG | - | tig0041768:8585-8604 | None:intergenic | 55.0% | |
| !! | GGATTCGAGGTGTTGCAGGT+TGG | - | tig0041768:8618-8637 | None:intergenic | 55.0% |
| !! | GGAAGGATTCGAGGTGTTGC+AGG | - | tig0041768:8622-8641 | None:intergenic | 55.0% |
| AAGGACGTTGATGCCGCATG+TGG | + | tig0041768:8811-8830 | Msa1461880:CDS | 55.0% | |
| CCAATCAGTGTCGCCACATG+CGG | - | tig0041768:8827-8846 | None:intergenic | 55.0% | |
| ! | CGCATGTGGCGACACTGATT+GGG | + | tig0041768:8825-8844 | Msa1461880:CDS | 55.0% |
| GTGTAAGGCGAATCCTTGGG+AGG | - | tig0041768:8953-8972 | None:intergenic | 55.0% | |
| ! | ATTCCCTTCAGGAGGGGCAT+TGG | + | tig0041768:9850-9869 | Msa1461880:intron | 55.0% |
| CTGGTATCGTAACAGCGTGG+TGG | - | tig0041768:8077-8096 | None:intergenic | 55.0% | |
| ATTACCGGCCTTCCTGTAGG+CGG | + | tig0041768:8188-8207 | Msa1461880:CDS | 55.0% | |
| GGTGTACTGCTTGCACTTGC+TGG | + | tig0041768:8209-8228 | Msa1461880:CDS | 55.0% | |
| CTTGCTGGACTCTCCCTTCT+TGG | + | tig0041768:8224-8243 | Msa1461880:CDS | 55.0% | |
| ! | TGGAACACTCACTGGACTGG+GGG | + | tig0041768:8244-8263 | Msa1461880:CDS | 55.0% |
| ! | GTCTGCAGCTTTTGGGCTGA+TGG | + | tig0041768:8352-8371 | Msa1461880:CDS | 55.0% |
| ! | CAGCTTTTGGGCTGATGGCA+CGG | + | tig0041768:8357-8376 | Msa1461880:CDS | 55.0% |
| TGGCACGGTCCTTGTTCTCA+TGG | + | tig0041768:8372-8391 | Msa1461880:CDS | 55.0% | |
| GGCACGGTCCTTGTTCTCAT+GGG | + | tig0041768:8373-8392 | Msa1461880:CDS | 55.0% | |
| TGTAGAGGCCCTTGATCCTG+GGG | - | tig0041768:8413-8432 | None:intergenic | 55.0% | |
| CTGTAGAGGCCCTTGATCCT+GGG | - | tig0041768:8414-8433 | None:intergenic | 55.0% | |
| ! | GCTTATGGTGGAGTGGTGGT+CGG | + | tig0041768:8457-8476 | Msa1461880:CDS | 55.0% |
| ! | GAGGACTCGACGAGTGGTTT+TGG | - | tig0041768:8579-8598 | None:intergenic | 55.0% |
| GTTTGTGAGGACTCGACGAG+TGG | - | tig0041768:8585-8604 | None:intergenic | 55.0% | |
| !! | GGATTCGAGGTGTTGCAGGT+TGG | - | tig0041768:8618-8637 | None:intergenic | 55.0% |
| !! | GGAAGGATTCGAGGTGTTGC+AGG | - | tig0041768:8622-8641 | None:intergenic | 55.0% |
| AAGGACGTTGATGCCGCATG+TGG | + | tig0041768:8811-8830 | Msa1461880:CDS | 55.0% | |
| CCAATCAGTGTCGCCACATG+CGG | - | tig0041768:8827-8846 | None:intergenic | 55.0% | |
| ! | CGCATGTGGCGACACTGATT+GGG | + | tig0041768:8825-8844 | Msa1461880:CDS | 55.0% |
| GTGTAAGGCGAATCCTTGGG+AGG | - | tig0041768:8953-8972 | None:intergenic | 55.0% | |
| ! | ATTCCCTTCAGGAGGGGCAT+TGG | + | tig0041768:9850-9869 | Msa1461880:intron | 55.0% |
| TACACCGCCTACAGGAAGGC+CGG | - | tig0041768:8195-8214 | None:intergenic | 60.0% | |
| GCAGTACACCGCCTACAGGA+AGG | - | tig0041768:8199-8218 | None:intergenic | 60.0% | |
| GCAAGCAGTACACCGCCTAC+AGG | - | tig0041768:8203-8222 | None:intergenic | 60.0% | |
| CCTGTAGAGGCCCTTGATCC+TGG | - | tig0041768:8415-8434 | None:intergenic | 60.0% | |
| CCAGGATCAAGGGCCTCTAC+AGG | + | tig0041768:8412-8431 | Msa1461880:CDS | 60.0% | |
| CCGCATGTGGCGACACTGAT+TGG | + | tig0041768:8824-8843 | Msa1461880:CDS | 60.0% | |
| TGCTTCACCCACTCCTCCCA+AGG | + | tig0041768:8937-8956 | Msa1461880:CDS | 60.0% | |
| GGCGAATCCTTGGGAGGAGT+GGG | - | tig0041768:8947-8966 | None:intergenic | 60.0% | |
| AGGCGAATCCTTGGGAGGAG+TGG | - | tig0041768:8948-8967 | None:intergenic | 60.0% | |
| CGTCCAATGCCCCTCCTGAA+GGG | - | tig0041768:9856-9875 | None:intergenic | 60.0% | |
| !! | CCTTCAGGAGGGGCATTGGA+CGG | + | tig0041768:9854-9873 | Msa1461880:intron | 60.0% |
| TACACCGCCTACAGGAAGGC+CGG | - | tig0041768:8195-8214 | None:intergenic | 60.0% | |
| GCAGTACACCGCCTACAGGA+AGG | - | tig0041768:8199-8218 | None:intergenic | 60.0% | |
| GCAAGCAGTACACCGCCTAC+AGG | - | tig0041768:8203-8222 | None:intergenic | 60.0% | |
| CCTGTAGAGGCCCTTGATCC+TGG | - | tig0041768:8415-8434 | None:intergenic | 60.0% | |
| CCAGGATCAAGGGCCTCTAC+AGG | + | tig0041768:8412-8431 | Msa1461880:CDS | 60.0% | |
| CCGCATGTGGCGACACTGAT+TGG | + | tig0041768:8824-8843 | Msa1461880:CDS | 60.0% | |
| TGCTTCACCCACTCCTCCCA+AGG | + | tig0041768:8937-8956 | Msa1461880:CDS | 60.0% | |
| GGCGAATCCTTGGGAGGAGT+GGG | - | tig0041768:8947-8966 | None:intergenic | 60.0% | |
| AGGCGAATCCTTGGGAGGAG+TGG | - | tig0041768:8948-8967 | None:intergenic | 60.0% | |
| CGTCCAATGCCCCTCCTGAA+GGG | - | tig0041768:9856-9875 | None:intergenic | 60.0% | |
| !! | CCTTCAGGAGGGGCATTGGA+CGG | + | tig0041768:9854-9873 | Msa1461880:intron | 60.0% |
| TGGTGGAGTGGTGGTCGGAG+TGG | + | tig0041768:8462-8481 | Msa1461880:CDS | 65.0% | |
| CCGTCCAATGCCCCTCCTGA+AGG | - | tig0041768:9857-9876 | None:intergenic | 65.0% | |
| TGGTGGAGTGGTGGTCGGAG+TGG | + | tig0041768:8462-8481 | Msa1461880:CDS | 65.0% | |
| CCGTCCAATGCCCCTCCTGA+AGG | - | tig0041768:9857-9876 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041768 | gene | 8032 | 10167 | 8032 | ID=Msa1461880;Name=Msa1461880 |
| tig0041768 | mRNA | 8032 | 10167 | 8032 | ID=Msa1461880-mRNA-1;Parent=Msa1461880;Name=Msa1461880-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|1|0.5|1|1|1|2|147|377 |
| tig0041768 | exon | 8032 | 9005 | 8032 | ID=Msa1461880-mRNA-1:exon:23388;Parent=Msa1461880-mRNA-1 |
| tig0041768 | exon | 9861 | 10167 | 9861 | ID=Msa1461880-mRNA-1:exon:23389;Parent=Msa1461880-mRNA-1 |
| tig0041768 | CDS | 8032 | 9005 | 8032 | ID=Msa1461880-mRNA-1:cds;Parent=Msa1461880-mRNA-1 |
| tig0041768 | CDS | 9861 | 10020 | 9861 | ID=Msa1461880-mRNA-1:cds;Parent=Msa1461880-mRNA-1 |
| tig0041768 | three_prime_UTR | 10021 | 10167 | 10021 | ID=Msa1461880-mRNA-1:three_prime_utr;Parent=Msa1461880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
