AlfalfaGEDB | Msa1462280

M. sativa cultivar zhongmu-4 / Msa1462280

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051252 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2000278 GO:2000573 GO:2001141
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1462280	XP_013468537.1	98.953	191	2	0	1	191	1	191	1.96e-139	397

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1462280	sp\|Q38895\|SUP_ARATH	60.870	46	15	1	25	67	29	74	1.35e-11	63.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1462280	I3SLS0	98.953	191	2	0	1	191	1	191	9.36e-140	397

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TFs/TRs:

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Gene ID	Type	Classification
Msa1462280	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1462280	MtrunA17_Chr1g0184331	99.194	124	1	0	1	124	1	124	5.26e-89	257
Msa1462280	MtrunA17_Chr5g0400571	30.769	169	102	2	38	191	80	248	7.39e-16	73.2
Msa1462280	MtrunA17_Chr1g0187231	68.000	50	14	1	22	71	4	51	1.52e-15	71.2
Msa1462280	MtrunA17_Chr1g0168181	32.203	177	96	5	16	189	4	159	2.12e-15	70.5
Msa1462280	MtrunA17_Chr4g0032111	62.745	51	18	1	28	78	11	60	1.28e-14	68.6
Msa1462280	MtrunA17_Chr7g0239441	61.364	44	17	0	35	78	34	77	1.01e-13	65.5
Msa1462280	MtrunA17_Chr2g0315591	44.928	69	32	1	18	80	24	92	7.45e-12	62.0
Msa1462280	MtrunA17_Chr1g0184381	52.727	55	13	2	26	67	10	64	3.01e-11	59.7
Msa1462280	MtrunA17_Chr5g0396031	44.615	65	32	1	3	67	15	75	5.69e-11	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1462280	AT5G43540.1	47.059	68	33	1	40	107	35	99	1.99e-13	64.7
Msa1462280	AT4G17810.1	30.460	174	87	6	38	191	44	203	2.30e-13	66.2
Msa1462280	AT4G17810.2	31.210	157	78	5	38	191	44	173	5.87e-13	64.3
Msa1462280	AT3G23130.1	60.870	46	15	1	25	67	29	74	1.38e-12	63.9
Msa1462280	AT3G09290.1	67.568	37	12	0	31	67	26	62	1.60e-11	60.5
Msa1462280	AT3G53820.1	75.000	32	8	0	37	68	18	49	4.54e-11	58.5
Msa1462280	AT2G37740.1	40.506	79	44	1	27	102	26	104	4.99e-11	60.8

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Find 32 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGATGTTTGAACAAGAT+TGG	0.344523	tig0042133:+1311	Msa1462280:CDS
AATCCAAGTCATCTTGCAAG+AGG	0.624664	tig0042133:+1169	Msa1462280:CDS
ACAACTGCTCAAGCTTTAGG+TGG	0.547877	tig0042133:+1010	Msa1462280:CDS
ACTAATTTGCTTGAACTAGG+AGG	0.604445	tig0042133:-1100	None:intergenic
ACTACTAATTTGCTTGAACT+AGG	0.523496	tig0042133:-1103	None:intergenic
AGCTCTTCGAGTCTTCTTGA+AGG	0.511682	tig0042133:-877	None:intergenic
ATAGAAAACAACAATGAAGT+GGG	0.595407	tig0042133:+1376	Msa1462280:CDS
ATCCAAGTCATCTTGCAAGA+GGG	0.566204	tig0042133:+1170	Msa1462280:CDS
ATCCACAACAACTACTCCTG+AGG	0.666114	tig0042133:+1213	Msa1462280:CDS
ATGTTTGAACAAGATTGGAG+GGG	0.639186	tig0042133:+1316	Msa1462280:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAGTTGATCATGATAACTA+TGG	+	tig0042133:1121-1140	Msa1462280:CDS	30.0%
TAATTAAGAGAATCTACCTC+AGG	-	tig0042133:1232-1251	None:intergenic	30.0%
TGTTGTGTGTTGAAAATCAA+AGG	+	tig0042133:1293-1312	Msa1462280:CDS	30.0%
AAAGGATGTTTGAACAAGAT+TGG	+	tig0042133:1311-1330	Msa1462280:CDS	30.0%
GATAGAAAACAACAATGAAG+TGG	+	tig0042133:1375-1394	Msa1462280:CDS	30.0%
GATGATCATGATCATCACAT+GGG	+	tig0042133:944-963	Msa1462280:CDS	35.0%
CATGATAACTATGGAGATCT+TGG	+	tig0042133:1130-1149	Msa1462280:CDS	35.0%
TCACTATATTGCACATGTGA+AGG	-	tig0042133:1271-1290	None:intergenic	35.0%
GATGTTTGAACAAGATTGGA+GGG	+	tig0042133:1315-1334	Msa1462280:CDS	35.0%
ATGTTTGAACAAGATTGGAG+GGG	+	tig0042133:1316-1335	Msa1462280:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0042133	gene	863	1438	863	ID=Msa1462280;Name=Msa1462280
tig0042133	mRNA	863	1438	863	ID=Msa1462280-mRNA-1;Parent=Msa1462280;Name=Msa1462280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|191
tig0042133	exon	863	1438	863	ID=Msa1462280-mRNA-1:exon:23591;Parent=Msa1462280-mRNA-1
tig0042133	CDS	863	1438	863	ID=Msa1462280-mRNA-1:cds;Parent=Msa1462280-mRNA-1

Gene Sequence

>Msa1462280

ATGGAATTCAGCTACCTTCAAGAAGACTCGAAGAGCTCGAGCGATGAAAACATCGATCGATCATCTGACCAAAACAACGACGATGATCATGATCATCACATGGGAATTGGTAGATCTTATGAGTGTGTGTTTTGCAAAAGAGGTTTCACAACTGCTCAAGCTTTAGGTGGACACATGAACATACATAGAAAAGATAGAGCAAATAACAACAAAAGTGCCACTAAAACCAATTTTGCTCCTCCTAGTTCAAGCAAATTAGTAGTTGATCATGATAACTATGGAGATCTTGGATTTTATTCAACAATTAATCCAAGTCATCTTGCAAGAGGGGGTTATTATTCTTCAATTTCATCCACAACAACTACTCCTGAGGTAGATTCTCTTAATTATCATCAAATATATTTTCCTTCACATGTGCAATATAGTGAGATGTTGTGTGTTGAAAATCAAAGGATGTTTGAACAAGATTGGAGGGGTTTGAGCTTGTATACAAATCCATTAAATAAAGACAAGATAGAAAACAACAATGAAGTGGGTGAATTGGATTTGGAGCTTAGACTTGGTCATTATCCATAG

Protein sequence

>Msa1462280

MEFSYLQEDSKSSSDENIDRSSDQNNDDDHDHHMGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNNKSATKTNFAPPSSSKLVVDHDNYGDLGFYSTINPSHLARGGYYSSISSTTTTPEVDSLNYHQIYFPSHVQYSEMLCVENQRMFEQDWRGLSLYTNPLNKDKIENNNEVGELDLELRLGHYP*