AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1462970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462970 MtrunA17_Chr1g0206721 93.077 130 9 0 1 130 1 130 1.41e-85 249
Msa1462970 MtrunA17_Chr1g0206701 93.077 130 9 0 1 130 1 130 3.42e-85 248
Msa1462970 MtrunA17_Chr3g0099411 94.444 126 7 0 1 126 1 126 1.86e-84 246
Msa1462970 MtrunA17_Chr8g0355091 92.308 130 10 0 1 130 1 130 3.12e-84 246
Msa1462970 MtrunA17_Chr1g0149391 90.698 129 12 0 1 129 1 129 3.87e-83 243
Msa1462970 MtrunA17_Chr3g0099421 87.692 130 16 0 1 130 26 155 1.01e-80 238
Msa1462970 MtrunA17_Chr1g0206991 87.692 130 16 0 1 130 1 130 2.86e-80 234
Msa1462970 MtrunA17_Chr2g0292791 86.923 130 17 0 1 130 1 130 1.22e-78 231
Msa1462970 MtrunA17_Chr1g0208561 80.000 130 26 0 1 130 1 130 7.58e-73 216
Msa1462970 MtrunA17_Chr3g0089141 80.000 130 26 0 1 130 1 130 3.11e-72 215
Msa1462970 MtrunA17_Chr1g0206691 89.381 113 12 0 18 130 1 113 1.01e-70 211
Msa1462970 MtrunA17_Chr2g0325971 76.923 130 30 0 1 130 1 130 5.16e-68 204
Msa1462970 MtrunA17_Chr1g0208581 76.154 130 31 0 1 130 1 130 6.78e-68 204
Msa1462970 MtrunA17_Chr2g0300421 75.000 128 32 0 1 128 1 128 1.72e-66 199
Msa1462970 MtrunA17_Chr5g0419601 74.219 128 33 0 1 128 1 128 7.41e-66 199
Msa1462970 MtrunA17_Chr1g0187361 74.219 128 33 0 1 128 1 128 3.65e-65 197
Msa1462970 MtrunA17_Chr3g0089151 72.868 129 35 0 1 129 1 129 2.50e-64 192
Msa1462970 MtrunA17_Chr1g0188671 71.875 128 36 0 1 128 39 166 3.31e-64 196
Msa1462970 MtrunA17_Chr2g0300441 75.194 129 32 0 1 129 1 129 2.79e-63 192
Msa1462970 MtrunA17_Chr2g0317451 70.312 128 38 0 1 128 1 128 7.75e-63 191
Msa1462970 MtrunA17_Chr2g0317481 70.312 128 38 0 1 128 1 128 8.37e-63 191
Msa1462970 MtrunA17_Chr5g0422941 69.291 127 39 0 1 127 1 127 1.80e-61 188
Msa1462970 MtrunA17_Chr5g0422421 67.969 128 41 0 1 128 1 128 2.64e-57 177
Msa1462970 MtrunA17_Chr3g0085241 60.630 127 50 0 3 129 35 161 3.66e-54 170
Msa1462970 MtrunA17_Chr3g0119901 62.602 123 46 0 7 129 7 129 1.05e-53 167
Msa1462970 MtrunA17_Chr3g0111931 64.078 103 37 0 21 123 2 104 1.27e-45 144
Msa1462970 MtrunA17_Chr7g0238991 66.972 109 35 1 16 123 27 135 7.72e-45 146
Msa1462970 MtrunA17_Chr1g0187351 78.788 66 14 0 18 83 1 66 2.42e-35 116
Msa1462970 MtrunA17_Chr2g0333981 42.520 127 63 2 5 128 8 127 8.41e-34 115
Msa1462970 MtrunA17_Chr8g0379021 43.307 127 62 2 5 128 8 127 1.89e-32 112
Msa1462970 MtrunA17_Chr3g0111841 83.051 59 10 0 15 73 2 60 2.66e-32 108
Msa1462970 MtrunA17_Chr4g0018951 47.200 125 58 2 5 129 8 124 1.79e-31 109
Msa1462970 MtrunA17_Chr4g0071601 43.307 127 62 2 5 128 8 127 2.52e-27 99.8
Msa1462970 MtrunA17_Chr3g0111831 70.492 61 18 0 16 76 11 71 9.73e-27 95.1
Msa1462970 MtrunA17_Chr1g0175601 44.144 111 59 2 9 118 2 110 6.59e-26 95.9
Msa1462970 MtrunA17_Chr1g0169761 57.971 69 29 0 9 77 2 70 1.33e-24 92.8
Msa1462970 MtrunA17_Chr1g0180591 42.342 111 61 2 9 118 2 110 2.77e-24 91.7
Msa1462970 MtrunA17_Chr8g0357771 40.800 125 69 2 9 130 2 124 3.38e-24 91.7
Msa1462970 MtrunA17_Chr8g0376821 42.857 112 59 3 9 118 2 110 4.51e-24 91.3
Msa1462970 MtrunA17_Chr1g0175611 41.593 113 64 1 9 121 2 112 1.69e-23 89.4
Msa1462970 MtrunA17_Chr4g0074101 37.302 126 63 4 9 118 2 127 2.06e-23 90.1
Msa1462970 MtrunA17_Chr8g0356071 38.889 126 68 3 9 130 2 122 3.34e-23 88.6
Msa1462970 MtrunA17_Chr4g0052061 39.623 106 62 1 9 114 2 105 2.49e-21 83.6
Msa1462970 MtrunA17_Chr4g0052081 39.623 106 63 1 9 113 2 107 6.28e-20 80.5
Msa1462970 MtrunA17_Chr3g0077501 50.000 68 34 0 9 76 2 69 1.77e-18 77.8
Msa1462970 MtrunA17_Chr4g0057151 47.945 73 38 0 10 82 3 75 3.71e-18 76.6
Msa1462970 MtrunA17_Chr3g0097101 40.566 106 53 1 3 108 11 106 3.90e-18 77.4
Msa1462970 MtrunA17_Chr4g0049901 53.030 66 31 0 10 75 29 94 6.36e-18 76.6
Msa1462970 MtrunA17_Chr8g0351041 44.872 78 43 0 10 87 3 80 2.20e-17 73.6
Msa1462970 MtrunA17_Chr5g0427401 48.529 68 35 0 9 76 2 69 3.67e-17 74.3
Msa1462970 MtrunA17_Chr8g0351051 48.529 68 35 0 9 76 2 69 7.56e-17 73.9
Msa1462970 MtrunA17_Chr6g0474371 46.377 69 36 1 9 76 2 70 8.26e-17 72.8
Msa1462970 MtrunA17_Chr2g0284911 37.273 110 68 1 9 118 17 125 1.31e-16 73.6
Msa1462970 MtrunA17_Chr8g0351031 44.872 78 43 0 10 87 3 80 1.57e-16 72.8
Msa1462970 MtrunA17_Chr1g0204111 47.059 68 36 0 9 76 18 85 1.96e-16 72.8
Msa1462970 MtrunA17_Chr4g0061691 44.928 69 37 1 9 76 2 70 1.96e-16 72.4
Msa1462970 MtrunA17_Chr8g0380021 46.667 75 40 0 2 76 11 85 1.97e-16 72.8
Msa1462970 MtrunA17_Chr7g0246431 36.364 110 68 1 10 119 3 110 2.48e-16 72.0
Msa1462970 MtrunA17_Chr2g0279821 45.588 68 37 0 9 76 2 69 4.09e-16 71.6
Msa1462970 MtrunA17_Chr4g0049541 44.118 68 38 0 9 76 2 69 1.02e-15 70.5
Msa1462970 MtrunA17_Chr5g0404951 47.143 70 35 1 9 76 2 71 1.66e-15 70.1
Msa1462970 MtrunA17_Chr6g0455511 46.377 69 36 1 9 76 2 70 1.78e-15 70.1
Msa1462970 MtrunA17_Chr4g0020221 33.562 146 66 3 9 123 2 147 2.18e-15 70.1
Msa1462970 MtrunA17_Chr3g0134451 39.423 104 60 3 9 111 2 103 2.22e-15 70.9
Msa1462970 MtrunA17_Chr7g0220111 46.377 69 36 1 9 76 2 70 2.68e-15 69.7
Msa1462970 MtrunA17_Chr5g0411691 45.588 68 37 0 9 76 2 69 4.31e-15 68.9
Msa1462970 MtrunA17_Chr8g0366231 43.478 69 38 1 9 76 2 70 5.26e-15 68.9
Msa1462970 MtrunA17_Chr1g0173161 53.571 56 26 0 9 64 2 57 5.35e-15 65.5
Msa1462970 MtrunA17_Chr5g0412271 44.118 68 38 0 9 76 2 69 6.67e-15 68.6
Msa1462970 MtrunA17_Chr7g0220121 40.580 69 40 1 9 76 2 70 7.96e-15 68.6
Msa1462970 MtrunA17_Chr5g0412461 44.118 68 38 0 9 76 2 69 8.10e-15 68.2
Msa1462970 MtrunA17_Chr5g0420081 42.254 71 38 1 9 79 2 69 9.48e-15 68.2
Msa1462970 MtrunA17_Chr2g0308251 43.056 72 41 0 9 80 2 73 9.73e-15 64.7
Msa1462970 MtrunA17_Chr5g0420091 44.928 69 37 1 9 76 2 70 1.73e-14 67.0
Msa1462970 MtrunA17_Chr1g0164791 45.714 70 36 1 9 76 2 71 1.83e-14 67.4
Msa1462970 MtrunA17_Chr1g0159661 43.939 66 36 1 9 74 2 66 3.51e-14 65.5
Msa1462970 MtrunA17_Chr3g0125241 41.429 70 39 1 9 76 27 96 3.52e-14 66.2
Msa1462970 MtrunA17_Chr8g0377561 50.000 56 28 0 9 64 2 57 6.08e-14 63.2
Msa1462970 MtrunA17_Chr5g0427921 45.614 57 31 0 9 65 2 58 7.08e-14 62.0
Msa1462970 MtrunA17_Chr4g0061671 47.368 57 30 0 9 65 2 58 7.79e-14 64.7
Msa1462970 MtrunA17_Chr7g0246381 44.776 67 32 1 9 70 2 68 1.19e-13 61.6
Msa1462970 MtrunA17_Chr5g0425191 50.943 53 26 0 9 61 2 54 1.28e-13 62.4
Msa1462970 MtrunA17_Chr3g0122251 39.175 97 56 1 9 105 2 95 1.33e-13 65.1
Msa1462970 MtrunA17_Chr3g0142191 42.857 70 38 1 9 76 2 71 1.33e-13 65.1
Msa1462970 MtrunA17_Chr4g0044071 47.368 57 30 0 9 65 2 58 2.54e-13 62.0
Msa1462970 MtrunA17_Chr8g0345001 41.333 75 44 0 8 82 17 91 2.91e-13 63.2
Msa1462970 MtrunA17_Chr4g0025531 40.741 81 48 0 1 81 1 81 7.80e-12 60.1
Msa1462970 MtrunA17_Chr3g0093131 46.296 54 28 1 26 78 36 89 2.95e-11 58.2
Msa1462970 MtrunA17_Chr4g0018421 37.143 70 43 1 9 77 2 71 3.92e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462970 AT5G60440.1 63.281 128 45 1 5 130 3 130 2.48e-52 167
Msa1462970 AT4G36590.1 52.419 124 52 2 5 123 3 124 1.05e-36 125
Msa1462970 AT1G01530.1 56.604 106 44 1 4 109 2 105 3.55e-36 124
Msa1462970 AT2G24840.1 50.000 128 56 3 6 130 60 182 2.09e-35 123
Msa1462970 AT1G65360.1 48.246 114 57 1 5 118 3 114 1.37e-33 117
Msa1462970 AT2G34440.1 43.363 113 63 1 9 121 2 113 8.57e-28 100
Msa1462970 AT3G66656.1 42.017 119 65 1 9 123 2 120 1.09e-25 95.9
Msa1462970 AT1G72350.1 53.425 73 32 1 9 81 43 113 3.27e-22 87.8
Msa1462970 AT3G04100.1 33.913 115 73 1 2 113 7 121 9.29e-21 83.6
Msa1462970 AT4G22950.2 47.368 76 40 0 10 85 3 78 2.41e-19 79.3
Msa1462970 AT2G45660.2 41.748 103 53 3 10 106 3 104 6.74e-19 77.8
Msa1462970 AT4G22950.3 49.296 71 36 0 10 80 3 73 1.83e-18 78.2
Msa1462970 AT4G22950.1 49.296 71 36 0 10 80 3 73 1.83e-18 78.2
Msa1462970 AT2G45660.1 50.000 68 34 0 10 77 3 70 2.07e-18 77.8
Msa1462970 AT2G45650.1 50.000 68 34 0 9 76 2 69 3.04e-18 78.2
Msa1462970 AT4G09960.2 48.529 68 35 0 9 76 2 69 5.43e-18 76.6
Msa1462970 AT4G09960.1 48.529 68 35 0 9 76 2 69 5.81e-18 77.0
Msa1462970 AT4G09960.6 48.529 68 35 0 9 76 3 70 5.96e-18 77.0
Msa1462970 AT4G09960.5 48.529 68 35 0 9 76 12 79 7.23e-18 76.6
Msa1462970 AT4G09960.3 48.529 68 35 0 9 76 28 95 9.71e-18 76.6
Msa1462970 AT4G09960.4 48.529 68 35 0 9 76 97 164 1.80e-17 77.0
Msa1462970 AT5G51870.1 50.746 67 33 0 10 76 3 69 2.70e-17 74.7
Msa1462970 AT5G51870.2 50.746 67 33 0 10 76 3 69 2.84e-17 73.9
Msa1462970 AT5G51870.4 50.746 67 33 0 10 76 3 69 4.75e-17 74.3
Msa1462970 AT5G51870.3 50.746 67 33 0 10 76 13 79 5.87e-17 74.3
Msa1462970 AT5G51870.5 47.222 72 38 0 5 76 21 92 6.07e-17 73.6
Msa1462970 AT4G18960.1 38.318 107 56 1 2 108 11 107 6.56e-17 74.3
Msa1462970 AT5G23260.1 45.745 94 43 3 5 90 12 105 9.19e-17 74.3
Msa1462970 AT5G23260.4 43.478 92 46 2 5 90 14 105 9.37e-17 74.3
Msa1462970 AT5G62165.14 46.269 67 36 0 10 76 3 69 9.95e-17 70.9
Msa1462970 AT1G28460.1 34.694 98 64 0 5 102 4 101 1.05e-16 72.8
Msa1462970 AT3G57230.2 44.118 68 38 0 9 76 2 69 1.19e-16 71.6
Msa1462970 AT5G62165.17 46.269 67 36 0 10 76 3 69 1.34e-16 71.6
Msa1462970 AT5G62165.12 46.269 67 36 0 10 76 3 69 1.34e-16 71.6
Msa1462970 AT5G62165.11 46.269 67 36 0 10 76 3 69 1.34e-16 71.6
Msa1462970 AT4G24540.1 37.069 116 68 2 9 124 2 112 1.52e-16 72.8
Msa1462970 AT5G23260.2 45.455 88 42 2 9 90 2 89 1.57e-16 73.6
Msa1462970 AT5G23260.3 45.455 88 42 2 9 90 2 89 1.66e-16 73.2
Msa1462970 AT3G61120.1 48.529 68 35 0 9 76 2 69 1.68e-16 73.2
Msa1462970 AT5G62165.6 46.269 67 36 0 10 76 3 69 1.94e-16 71.2
Msa1462970 AT5G62165.9 46.269 67 36 0 10 76 3 69 1.94e-16 71.2
Msa1462970 AT5G62165.7 46.269 67 36 0 10 76 3 69 1.94e-16 71.2
Msa1462970 AT5G62165.8 46.269 67 36 0 10 76 3 69 1.94e-16 71.2
Msa1462970 AT5G62165.13 46.269 67 36 0 10 76 3 69 1.94e-16 71.2
Msa1462970 AT4G37940.4 45.588 68 37 0 9 76 2 69 2.25e-16 72.4
Msa1462970 AT4G37940.1 45.588 68 37 0 9 76 2 69 2.28e-16 72.8
Msa1462970 AT2G42830.1 48.529 68 35 0 9 76 17 84 2.73e-16 72.8
Msa1462970 AT2G42830.2 48.529 68 35 0 9 76 17 84 3.01e-16 72.8
Msa1462970 AT4G37940.3 45.588 68 37 0 9 76 2 69 3.42e-16 71.2
Msa1462970 AT5G10140.2 47.826 69 35 1 9 76 2 70 3.45e-16 70.9
Msa1462970 AT3G58780.1 47.887 71 37 0 6 76 14 84 3.83e-16 72.4
Msa1462970 AT5G51860.2 49.254 67 34 0 10 76 3 69 3.89e-16 71.6
Msa1462970 AT3G57390.3 47.059 68 36 0 9 76 2 69 4.15e-16 72.0
Msa1462970 AT2G22540.3 47.059 68 36 0 9 76 2 69 4.51e-16 72.0
Msa1462970 AT2G22540.1 47.059 68 36 0 9 76 2 69 4.51e-16 72.0
Msa1462970 AT4G11880.2 45.833 72 38 1 10 80 3 74 4.52e-16 70.9
Msa1462970 AT4G11880.3 45.833 72 38 1 10 80 3 74 4.52e-16 70.9
Msa1462970 AT3G58780.5 47.887 71 37 0 6 76 20 90 4.72e-16 72.4
Msa1462970 AT5G51860.1 49.254 67 34 0 10 76 3 69 5.02e-16 71.2
Msa1462970 AT5G10140.3 47.826 69 35 1 9 76 2 70 5.06e-16 70.9
Msa1462970 AT5G62165.10 46.269 67 36 0 10 76 3 69 5.17e-16 71.2
Msa1462970 AT5G62165.4 46.269 67 36 0 10 76 3 69 5.17e-16 71.2
Msa1462970 AT5G10140.4 47.826 69 35 1 9 76 2 70 5.33e-16 70.9
Msa1462970 AT3G57230.1 44.118 68 38 0 9 76 2 69 5.49e-16 72.0
Msa1462970 AT3G57230.4 44.118 68 38 0 9 76 2 69 5.49e-16 72.0
Msa1462970 AT5G13790.2 48.529 68 35 0 9 76 2 69 5.58e-16 72.4
Msa1462970 AT5G62165.3 46.269 67 36 0 10 76 3 69 5.67e-16 71.2
Msa1462970 AT5G62165.1 46.269 67 36 0 10 76 3 69 5.67e-16 71.2
Msa1462970 AT5G62165.2 46.269 67 36 0 10 76 3 69 5.67e-16 71.2
Msa1462970 AT5G13790.1 48.529 68 35 0 9 76 2 69 5.69e-16 72.0
Msa1462970 AT5G10140.1 47.826 69 35 1 9 76 2 70 6.60e-16 70.9
Msa1462970 AT3G58780.4 47.887 71 37 0 6 76 14 84 7.07e-16 72.0
Msa1462970 AT3G30260.1 34.167 120 70 3 9 127 2 113 7.84e-16 71.6
Msa1462970 AT3G57390.1 47.059 68 36 0 9 76 2 69 8.20e-16 71.6
Msa1462970 AT4G11880.4 45.833 72 38 1 10 80 3 74 9.23e-16 70.9
Msa1462970 AT4G11880.1 45.833 72 38 1 10 80 3 74 9.23e-16 70.9
Msa1462970 AT3G54340.1 44.286 70 37 1 9 76 2 71 9.66e-16 70.9
Msa1462970 AT1G77950.3 43.421 76 41 2 9 83 2 76 1.22e-15 71.2
Msa1462970 AT1G77950.2 43.421 76 41 2 9 83 2 76 1.22e-15 71.2
Msa1462970 AT1G77950.1 43.421 76 41 2 9 83 2 76 1.22e-15 71.2
Msa1462970 AT1G77950.4 43.421 76 41 2 9 83 2 76 1.22e-15 71.2
Msa1462970 AT2G22630.1 44.118 68 38 0 9 76 2 69 1.45e-15 70.5
Msa1462970 AT2G22630.2 44.118 68 38 0 9 76 2 69 1.45e-15 70.5
Msa1462970 AT1G22130.1 34.286 105 68 1 9 112 2 106 1.86e-15 71.2
Msa1462970 AT5G60910.1 46.479 71 35 1 9 79 2 69 2.08e-15 70.5
Msa1462970 AT1G69120.2 38.889 90 52 1 9 98 2 88 2.24e-15 70.1
Msa1462970 AT1G17310.1 52.703 74 33 1 8 81 47 118 2.45e-15 69.7
Msa1462970 AT1G29962.1 40.541 74 44 0 5 78 4 77 2.51e-15 68.9
Msa1462970 AT1G77980.1 35.238 105 67 1 9 112 2 106 2.55e-15 70.9
Msa1462970 AT1G17310.2 50.633 79 37 1 8 86 58 134 3.03e-15 69.7
Msa1462970 AT1G26310.1 37.500 96 46 2 9 90 2 97 3.43e-15 70.1
Msa1462970 AT1G69120.1 38.889 90 52 1 9 98 2 88 4.01e-15 69.7
Msa1462970 AT5G20240.2 44.286 70 37 1 9 76 2 71 4.59e-15 67.8
Msa1462970 AT5G20240.1 44.286 70 37 1 9 76 2 71 7.40e-15 68.2
Msa1462970 AT5G15800.1 46.377 69 36 1 9 76 2 70 9.87e-15 68.6
Msa1462970 AT5G15800.2 46.377 69 36 1 9 76 2 70 1.82e-14 68.2
Msa1462970 AT2G14210.1 43.478 69 38 1 9 76 2 70 2.58e-14 67.4
Msa1462970 AT2G14210.2 43.478 69 38 1 9 76 2 70 3.22e-14 67.0
Msa1462970 AT5G65050.2 43.478 69 38 1 9 76 2 70 3.79e-14 65.9
Msa1462970 AT2G03710.3 44.286 70 37 2 9 76 2 71 4.11e-14 65.9
Msa1462970 AT3G02310.2 44.928 69 37 1 9 76 2 70 4.93e-14 65.9
Msa1462970 AT1G47760.1 31.405 121 67 3 9 129 2 106 9.07e-14 65.1
Msa1462970 AT3G58780.2 50.000 60 30 0 6 65 14 73 9.49e-14 65.9
Msa1462970 AT2G22540.2 51.786 56 27 0 9 64 2 57 1.02e-13 65.9
Msa1462970 AT5G65050.5 43.478 69 38 1 9 76 2 70 1.06e-13 64.7
Msa1462970 AT5G65050.3 43.478 69 38 1 9 76 2 70 1.06e-13 65.1
Msa1462970 AT3G58780.3 50.000 60 30 0 6 65 14 73 1.17e-13 65.9
Msa1462970 AT5G65050.1 43.478 69 38 1 9 76 2 70 1.21e-13 64.7
Msa1462970 AT2G03710.1 44.286 70 37 2 9 76 2 71 1.57e-13 65.5
Msa1462970 AT2G03710.2 44.286 70 37 2 9 76 2 71 1.64e-13 65.5
Msa1462970 AT5G65060.3 43.478 69 38 1 9 76 2 70 1.83e-13 64.3
Msa1462970 AT1G24260.2 39.175 97 56 1 9 105 2 95 1.98e-13 65.1
Msa1462970 AT1G24260.1 50.000 56 28 0 9 64 2 57 2.10e-13 65.1
Msa1462970 AT1G24260.3 39.175 97 56 1 9 105 2 95 2.24e-13 64.7
Msa1462970 AT5G65060.2 43.478 69 38 1 9 76 2 70 2.72e-13 63.5
Msa1462970 AT1G71692.1 41.429 70 40 1 9 77 2 71 3.04e-13 63.9
Msa1462970 AT5G65060.1 43.478 69 38 1 9 76 2 70 3.14e-13 63.9
Msa1462970 AT3G02310.1 44.928 69 37 1 9 76 2 70 3.72e-13 64.3
Msa1462970 AT5G65070.4 39.130 69 41 1 9 76 2 70 6.51e-13 62.0
Msa1462970 AT5G65070.1 39.130 69 41 1 9 76 2 70 1.29e-12 62.4
Msa1462970 AT1G28450.1 35.135 74 48 0 5 78 4 77 1.85e-12 61.6
Msa1462970 AT5G65070.2 39.130 69 41 1 9 76 2 70 2.68e-12 61.6
Msa1462970 AT5G65070.5 39.130 69 41 1 9 76 2 70 3.65e-12 61.2
Msa1462970 AT4G37435.1 37.500 72 44 1 9 79 2 73 6.19e-12 60.1
Msa1462970 AT5G65070.3 43.860 57 32 0 9 65 2 58 1.45e-11 59.7

Find 23 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCATGGTACCATTGTTT+TGG 0.337688 tig0042870:-3874 None:intergenic
TCTTCTCGTTGTCCAGTAGC+TGG 0.424175 tig0042870:-3958 None:intergenic
CGTAGTGGGCTCTTCAAGAA+AGG 0.499918 tig0042870:+3722 Msa1462970:CDS
GACTCAGATCAACCAGCTAC+TGG 0.507836 tig0042870:+3946 Msa1462970:CDS
TGGCCAACCCAATGTGGATA+CGG 0.509185 tig0042870:+3820 Msa1462970:CDS
TCTATGACCGTATCCACATT+GGG 0.514276 tig0042870:-3827 None:intergenic
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 tig0042870:-3910 None:intergenic
ATCTATGACCGTATCCACAT+TGG 0.545676 tig0042870:-3828 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 tig0042870:+3708 Msa1462970:CDS
AGCGACATGTGCACCACAGA+TGG 0.558797 tig0042870:-3759 None:intergenic
CTTCAACCATGTCGAGTGGA+AGG 0.562158 tig0042870:+3621 None:intergenic
AATGAAAATACCTTCTCTCC+AGG 0.563686 tig0042870:-3797 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 tig0042870:+3707 Msa1462970:CDS
AGTATTGAGCTCGCGCACGT+TGG 0.584782 tig0042870:-3918 None:intergenic
TGACCGTATCCACATTGGGT+TGG 0.608969 tig0042870:-3823 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 tig0042870:-3721 None:intergenic
TTCATTTGGCCAACCCAATG+TGG 0.622502 tig0042870:+3814 Msa1462970:CDS
TGTGCTTCAACCATGTCGAG+TGG 0.638522 tig0042870:+3617 None:intergenic
CGAGTCCCACCCCAAAACAA+TGG 0.639467 tig0042870:+3863 Msa1462970:CDS
GTGAGTCTCAATGAATTGCA+TGG 0.640763 tig0042870:-3888 None:intergenic
AGTGAGCTTTGTACCATCTG+TGG 0.652271 tig0042870:+3746 Msa1462970:CDS
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 tig0042870:+3632 Msa1462970:CDS
GGACAACGAGAAGAAACGTG+CGG 0.746947 tig0042870:+3967 Msa1462970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - tig0042870:3661-3680 None:intergenic 20.0%
AATGAAAATACCTTCTCTCC+AGG - tig0042870:3800-3819 None:intergenic 35.0%
!!! GGAGAGAAGGTATTTTCATT+TGG + tig0042870:3800-3819 Msa1462970:CDS 35.0%
! TTGCATGGTACCATTGTTTT+GGG - tig0042870:3876-3895 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG - tig0042870:3877-3896 None:intergenic 35.0%
TCTATGACCGTATCCACATT+GGG - tig0042870:3830-3849 None:intergenic 40.0%
ATCTATGACCGTATCCACAT+TGG - tig0042870:3831-3850 None:intergenic 40.0%
!! TGCATGGTACCATTGTTTTG+GGG - tig0042870:3875-3894 None:intergenic 40.0%
GTGAGTCTCAATGAATTGCA+TGG - tig0042870:3891-3910 None:intergenic 40.0%
! TCTCAATCTTTTGGCGACCT+CGG - tig0042870:3652-3671 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - tig0042870:3724-3743 None:intergenic 45.0%
! AGTGAGCTTTGTACCATCTG+TGG + tig0042870:3746-3765 Msa1462970:CDS 45.0%
! TGTTTTCTCACCTGGAGAGA+AGG + tig0042870:3787-3806 Msa1462970:CDS 45.0%
TTCATTTGGCCAACCCAATG+TGG + tig0042870:3814-3833 Msa1462970:CDS 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG - tig0042870:3871-3890 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG - tig0042870:3872-3891 None:intergenic 45.0%
!! CGTAGTGGGCTCTTCAAGAA+AGG + tig0042870:3722-3741 Msa1462970:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + tig0042870:3779-3798 Msa1462970:CDS 50.0%
TGGCCAACCCAATGTGGATA+CGG + tig0042870:3820-3839 Msa1462970:CDS 50.0%
TGACCGTATCCACATTGGGT+TGG - tig0042870:3826-3845 None:intergenic 50.0%
GACTCAGATCAACCAGCTAC+TGG + tig0042870:3946-3965 Msa1462970:CDS 50.0%
TCTTCTCGTTGTCCAGTAGC+TGG - tig0042870:3961-3980 None:intergenic 50.0%
GGACAACGAGAAGAAACGTG+CGG + tig0042870:3967-3986 Msa1462970:CDS 50.0%
TCGAGTGGAAGGAAAAGCCG+AGG + tig0042870:3632-3651 Msa1462970:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + tig0042870:3707-3726 Msa1462970:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + tig0042870:3708-3727 Msa1462970:CDS 55.0%
AGCGACATGTGCACCACAGA+TGG - tig0042870:3762-3781 None:intergenic 55.0%
CGAGTCCCACCCCAAAACAA+TGG + tig0042870:3863-3882 Msa1462970:CDS 55.0%
! AGTATTGAGCTCGCGCACGT+TGG - tig0042870:3921-3940 None:intergenic 55.0%
GCTCGCGCACGTTGGCGCTA+CGG - tig0042870:3913-3932 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0042870 gene 3629 4021 3629 ID=Msa1462970;Name=Msa1462970
tig0042870 mRNA 3629 4021 3629 ID=Msa1462970-mRNA-1;Parent=Msa1462970;Name=Msa1462970-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|1|1|0|130
tig0042870 exon 3629 4021 3629 ID=Msa1462970-mRNA-1:exon:23854;Parent=Msa1462970-mRNA-1
tig0042870 CDS 3629 4021 3629 ID=Msa1462970-mRNA-1:cds;Parent=Msa1462970-mRNA-1
Gene Sequence

>Msa1462970

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGGCAGTGAGCTTTGTACCATCTGTGGTGCACATGTCGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCATTTGGCCAACCCAATGTGGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGACTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGTTGACTCAGATCAACCAGCTACTGGACAACGAGAAGAAACGTGCGGAAGAGCTGAGACACTTGCGCAAAGCTACATAG
Protein sequence

>Msa1462970

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKGSELCTICGAHVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIETHRSANVRELNTQLTQINQLLDNEKKRAEELRHLRKAT*