AlfalfaGEDB | Msa1464780

M. sativa cultivar zhongmu-4 / Msa1464780

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009965 GO:0010016 GO:0010358 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048532 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141
PFAM: PF03110.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464780	RHN42487.1	56.098	164	49	1	1	141	89	252	1.47e-49	171

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464780	sp\|Q5Z818\|SPL12_ORYSJ	35.526	152	70	2	3	126	140	291	2.57e-23	98.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464780	A0A396GV41	56.098	164	49	1	1	141	89	252	7.01e-50	171

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TFs/TRs:

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Gene ID	Type	Classification
Msa1464780	TF	SBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464780	MtrunA17_Chr8g0377421	56.098	164	49	1	1	141	89	252	1.35e-53	171
Msa1464780	MtrunA17_Chr3g0122411	56.911	123	48	1	19	141	168	285	1.33e-38	135
Msa1464780	MtrunA17_Chr8g0360361	59.722	72	29	0	36	107	80	151	2.78e-24	92.8
Msa1464780	MtrunA17_Chr8g0377401	52.128	94	22	1	25	95	143	236	2.89e-24	94.7
Msa1464780	MtrunA17_Chr3g0132091	47.959	98	49	1	35	132	87	182	1.13e-22	92.0
Msa1464780	MtrunA17_Chr4g0061651	52.778	72	32	1	35	106	137	206	3.62e-20	85.9
Msa1464780	MtrunA17_Chr7g0231911	54.930	71	32	0	35	105	163	233	9.08e-20	83.6
Msa1464780	MtrunA17_Chr8g0386271	51.111	90	41	2	35	124	113	199	9.22e-20	84.3
Msa1464780	MtrunA17_Chr4g0046991	57.143	63	27	0	32	94	84	146	4.06e-19	79.0
Msa1464780	MtrunA17_Chr7g0224821	54.545	66	30	0	35	100	91	156	4.64e-19	82.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464780	AT5G43270.3	60.000	75	27	1	23	97	174	245	2.44e-23	95.1
Msa1464780	AT5G43270.1	60.000	75	27	1	23	97	174	245	2.44e-23	95.1
Msa1464780	AT5G43270.2	60.000	75	27	1	23	97	174	245	2.44e-23	95.1
Msa1464780	AT1G27370.6	63.235	68	23	1	33	100	188	253	4.10e-22	90.9
Msa1464780	AT1G27370.1	63.235	68	23	1	33	100	188	253	7.15e-22	90.9
Msa1464780	AT1G27370.5	63.235	68	23	1	33	100	188	253	7.15e-22	90.9
Msa1464780	AT1G27370.3	63.235	68	23	1	33	100	188	253	7.15e-22	90.9
Msa1464780	AT1G27370.2	63.235	68	23	1	33	100	188	253	7.15e-22	90.9
Msa1464780	AT1G27370.4	63.235	68	23	1	33	100	188	253	7.15e-22	90.9
Msa1464780	AT1G27370.7	63.235	68	23	1	33	100	188	253	7.15e-22	90.9

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Find 20 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCATAGTCACAGTACTTG+TGG	0.569751	tig0044627:+4611	None:intergenic
AAGTCATTCAAAATATCCAA+TGG	0.603959	tig0044627:-5962	Msa1464780:CDS
AATGGTGGTTATAGCTGGTG+TGG	0.622477	tig0044627:-5944	Msa1464780:CDS
ACACCAGCTATAACCACCAT+TGG	0.565825	tig0044627:+5946	None:intergenic
ACGAAGCTGATTGACTTGAT+TGG	0.388694	tig0044627:+5612	None:intergenic
AGCATAGTCACAGTACTTGT+GGG	0.507429	tig0044627:+4612	None:intergenic
AGTCTGCTACAAATTTAGCC+TGG	0.601473	tig0044627:-4687	Msa1464780:CDS
ATAGTCACAGTACTTGTGGG+GGG	0.670761	tig0044627:+4615	None:intergenic
ATCTTGTGTCATCTAAGTAT+TGG	0.516306	tig0044627:-6104	Msa1464780:CDS
CAGATTCAGGATGATATTTA+CGG	0.380220	tig0044627:+5636	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTTGTGTCATCTAAGTAT+TGG	-	tig0044627:4663-4682	Msa1464780:CDS	30.0%
TCATTCAAAATATCCAATGG+TGG	-	tig0044627:4808-4827	Msa1464780:intron	30.0%
CAGATTCAGGATGATATTTA+CGG	+	tig0044627:5134-5153	None:intergenic	30.0%
AATAGATAACAAGCAGAAAC+TGG	+	tig0044627:5202-5221	None:intergenic	30.0%
TGGATACTGGATATAGTTAT+AGG	-	tig0044627:5690-5709	Msa1464780:CDS	30.0%
ATCTTGTGTCATCTAAGTAT+TGG	-	tig0044627:4663-4682	Msa1464780:CDS	30.0%
TCATTCAAAATATCCAATGG+TGG	-	tig0044627:4808-4827	Msa1464780:intron	30.0%
CAGATTCAGGATGATATTTA+CGG	+	tig0044627:5134-5153	None:intergenic	30.0%
AATAGATAACAAGCAGAAAC+TGG	+	tig0044627:5202-5221	None:intergenic	30.0%
TGGATACTGGATATAGTTAT+AGG	-	tig0044627:5690-5709	Msa1464780:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0044627	gene	4603	6186	4603	ID=Msa1464780;Name=Msa1464780
tig0044627	mRNA	4603	6186	4603	ID=Msa1464780-mRNA-1;Parent=Msa1464780;Name=Msa1464780-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0\|0\|0\|1\|0\|0.25\|4\|0\|159
tig0044627	exon	6084	6186	6084	ID=Msa1464780-mRNA-1:exon:24574;Parent=Msa1464780-mRNA-1
tig0044627	exon	5916	6012	5916	ID=Msa1464780-mRNA-1:exon:24573;Parent=Msa1464780-mRNA-1
tig0044627	exon	5597	5733	5597	ID=Msa1464780-mRNA-1:exon:24572;Parent=Msa1464780-mRNA-1
tig0044627	exon	4603	4745	4603	ID=Msa1464780-mRNA-1:exon:24571;Parent=Msa1464780-mRNA-1
tig0044627	CDS	6084	6186	6084	ID=Msa1464780-mRNA-1:cds;Parent=Msa1464780-mRNA-1
tig0044627	CDS	5916	6012	5916	ID=Msa1464780-mRNA-1:cds;Parent=Msa1464780-mRNA-1
tig0044627	CDS	5597	5733	5597	ID=Msa1464780-mRNA-1:cds;Parent=Msa1464780-mRNA-1
tig0044627	CDS	4603	4745	4603	ID=Msa1464780-mRNA-1:cds;Parent=Msa1464780-mRNA-1

Gene Sequence

>Msa1464780

ATGAACTTTGAGGATTTATGTCTGAAAAAAGTGATTCCAAAAACCTATCTTTTTCAAGGGATCTTGTGTCATCTAAGTATTGGAAAGAAATGTAAGTCCAATGATTATCATCGCATACGTAGAGTTTGCGAAAGTCATTCAAAATATCCAATGGTGGTTATAGCTGGTGTGGAAAGTCGATTTTGCAAAAAATGTAGCAGTTTCCATGATCTGTTTGAGTTCGATGAAAAGAAGAGAAGCTGCAGACGACAACTTTCACGTCACAATACAAGACACCGTAAATATCATCCTGAATCTGTCCAATCAAGTCAATCAGCTTCGTCTTCTTCATCCTGTGATGGAAAGCAACAGATGAGTCCATTTGCTAATTCAAAGTCTGCTACAAATTTAGCCTGGCAAAACATGCACAACAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACAAGTACTGTGACTATGCTTTCTGTTGA

Protein sequence

>Msa1464780

MNFEDLCLKKVIPKTYLFQGILCHLSIGKKCKSNDYHRIRRVCESHSKYPMVVIAGVESRFCKKCSSFHDLFEFDEKKRSCRRQLSRHNTRHRKYHPESVQSSQSASSSSSCDGKQQMSPFANSKSATNLAWQNMHNSPPPPPPPPPPPPHKYCDYAFC*