Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464780 | RHN42487.1 | 56.098 | 164 | 49 | 1 | 1 | 141 | 89 | 252 | 1.47e-49 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464780 | sp|Q5Z818|SPL12_ORYSJ | 35.526 | 152 | 70 | 2 | 3 | 126 | 140 | 291 | 2.57e-23 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464780 | A0A396GV41 | 56.098 | 164 | 49 | 1 | 1 | 141 | 89 | 252 | 7.01e-50 | 171 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1464780 | TF | SBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464780 | MtrunA17_Chr8g0377421 | 56.098 | 164 | 49 | 1 | 1 | 141 | 89 | 252 | 1.35e-53 | 171 |
| Msa1464780 | MtrunA17_Chr3g0122411 | 56.911 | 123 | 48 | 1 | 19 | 141 | 168 | 285 | 1.33e-38 | 135 |
| Msa1464780 | MtrunA17_Chr8g0360361 | 59.722 | 72 | 29 | 0 | 36 | 107 | 80 | 151 | 2.78e-24 | 92.8 |
| Msa1464780 | MtrunA17_Chr8g0377401 | 52.128 | 94 | 22 | 1 | 25 | 95 | 143 | 236 | 2.89e-24 | 94.7 |
| Msa1464780 | MtrunA17_Chr3g0132091 | 47.959 | 98 | 49 | 1 | 35 | 132 | 87 | 182 | 1.13e-22 | 92.0 |
| Msa1464780 | MtrunA17_Chr4g0061651 | 52.778 | 72 | 32 | 1 | 35 | 106 | 137 | 206 | 3.62e-20 | 85.9 |
| Msa1464780 | MtrunA17_Chr7g0231911 | 54.930 | 71 | 32 | 0 | 35 | 105 | 163 | 233 | 9.08e-20 | 83.6 |
| Msa1464780 | MtrunA17_Chr8g0386271 | 51.111 | 90 | 41 | 2 | 35 | 124 | 113 | 199 | 9.22e-20 | 84.3 |
| Msa1464780 | MtrunA17_Chr4g0046991 | 57.143 | 63 | 27 | 0 | 32 | 94 | 84 | 146 | 4.06e-19 | 79.0 |
| Msa1464780 | MtrunA17_Chr7g0224821 | 54.545 | 66 | 30 | 0 | 35 | 100 | 91 | 156 | 4.64e-19 | 82.4 |
| Msa1464780 | MtrunA17_Chr7g0258471 | 50.000 | 80 | 40 | 0 | 36 | 115 | 157 | 236 | 6.95e-19 | 82.0 |
| Msa1464780 | MtrunA17_Chr2g0302791 | 53.731 | 67 | 31 | 0 | 33 | 99 | 151 | 217 | 7.84e-19 | 82.4 |
| Msa1464780 | MtrunA17_Chr1g0162871 | 51.351 | 74 | 36 | 0 | 32 | 105 | 115 | 188 | 8.78e-19 | 82.4 |
| Msa1464780 | MtrunA17_Chr2g0308321 | 56.667 | 60 | 26 | 0 | 35 | 94 | 185 | 244 | 3.02e-18 | 80.5 |
| Msa1464780 | MtrunA17_Chr1g0194121 | 52.174 | 69 | 33 | 0 | 32 | 100 | 158 | 226 | 5.08e-18 | 80.1 |
| Msa1464780 | MtrunA17_Chr5g0420051 | 56.452 | 62 | 27 | 0 | 33 | 94 | 193 | 254 | 5.62e-18 | 79.7 |
| Msa1464780 | MtrunA17_Chr7g0270541 | 51.471 | 68 | 33 | 0 | 33 | 100 | 157 | 224 | 3.09e-17 | 77.8 |
| Msa1464780 | MtrunA17_Chr8g0334671 | 56.923 | 65 | 27 | 1 | 36 | 99 | 202 | 266 | 7.87e-17 | 75.9 |
| Msa1464780 | MtrunA17_Chr2g0282521 | 52.381 | 63 | 30 | 0 | 36 | 98 | 79 | 141 | 1.15e-16 | 72.0 |
| Msa1464780 | MtrunA17_Chr2g0286661 | 41.860 | 86 | 44 | 1 | 36 | 115 | 118 | 203 | 4.30e-15 | 71.6 |
| Msa1464780 | MtrunA17_Chr8g0377431 | 41.667 | 96 | 34 | 1 | 3 | 76 | 111 | 206 | 1.25e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464780 | AT5G43270.3 | 60.000 | 75 | 27 | 1 | 23 | 97 | 174 | 245 | 2.44e-23 | 95.1 |
| Msa1464780 | AT5G43270.1 | 60.000 | 75 | 27 | 1 | 23 | 97 | 174 | 245 | 2.44e-23 | 95.1 |
| Msa1464780 | AT5G43270.2 | 60.000 | 75 | 27 | 1 | 23 | 97 | 174 | 245 | 2.44e-23 | 95.1 |
| Msa1464780 | AT1G27370.6 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 4.10e-22 | 90.9 |
| Msa1464780 | AT1G27370.1 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 7.15e-22 | 90.9 |
| Msa1464780 | AT1G27370.5 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 7.15e-22 | 90.9 |
| Msa1464780 | AT1G27370.3 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 7.15e-22 | 90.9 |
| Msa1464780 | AT1G27370.2 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 7.15e-22 | 90.9 |
| Msa1464780 | AT1G27370.4 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 7.15e-22 | 90.9 |
| Msa1464780 | AT1G27370.7 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 7.15e-22 | 90.9 |
| Msa1464780 | AT3G60030.1 | 47.561 | 82 | 43 | 0 | 32 | 113 | 138 | 219 | 1.07e-20 | 88.2 |
| Msa1464780 | AT1G69170.1 | 59.677 | 62 | 25 | 0 | 33 | 94 | 136 | 197 | 1.45e-19 | 84.3 |
| Msa1464780 | AT1G53160.3 | 53.521 | 71 | 33 | 0 | 36 | 106 | 69 | 139 | 1.63e-19 | 80.5 |
| Msa1464780 | AT1G53160.2 | 53.521 | 71 | 33 | 0 | 36 | 106 | 69 | 139 | 1.80e-19 | 80.5 |
| Msa1464780 | AT1G53160.1 | 53.521 | 71 | 33 | 0 | 36 | 106 | 69 | 139 | 1.80e-19 | 80.5 |
| Msa1464780 | AT2G47070.1 | 56.716 | 67 | 29 | 0 | 32 | 98 | 117 | 183 | 2.68e-19 | 84.3 |
| Msa1464780 | AT1G27360.2 | 62.712 | 59 | 22 | 0 | 36 | 94 | 190 | 248 | 6.83e-19 | 82.4 |
| Msa1464780 | AT1G27360.1 | 62.712 | 59 | 22 | 0 | 36 | 94 | 190 | 248 | 6.83e-19 | 82.4 |
| Msa1464780 | AT1G27360.3 | 62.712 | 59 | 22 | 0 | 36 | 94 | 190 | 248 | 6.83e-19 | 82.4 |
| Msa1464780 | AT1G27360.4 | 62.712 | 59 | 22 | 0 | 36 | 94 | 190 | 248 | 6.83e-19 | 82.4 |
| Msa1464780 | AT3G15270.1 | 52.941 | 68 | 32 | 0 | 32 | 99 | 74 | 141 | 2.25e-18 | 77.8 |
| Msa1464780 | AT1G76580.2 | 51.282 | 78 | 33 | 1 | 25 | 102 | 123 | 195 | 3.47e-18 | 80.9 |
| Msa1464780 | AT1G76580.3 | 51.282 | 78 | 33 | 1 | 25 | 102 | 123 | 195 | 3.75e-18 | 80.9 |
| Msa1464780 | AT2G33810.1 | 55.556 | 63 | 28 | 0 | 32 | 94 | 65 | 127 | 3.82e-18 | 76.3 |
| Msa1464780 | AT2G42200.1 | 56.923 | 65 | 28 | 0 | 36 | 100 | 89 | 153 | 4.81e-18 | 80.1 |
| Msa1464780 | AT1G76580.1 | 50.000 | 82 | 36 | 1 | 25 | 106 | 123 | 199 | 4.92e-18 | 80.5 |
| Msa1464780 | AT5G50570.1 | 54.545 | 66 | 30 | 0 | 35 | 100 | 115 | 180 | 5.44e-18 | 79.7 |
| Msa1464780 | AT5G50570.2 | 54.545 | 66 | 30 | 0 | 35 | 100 | 115 | 180 | 5.44e-18 | 79.7 |
| Msa1464780 | AT5G50670.1 | 54.545 | 66 | 30 | 0 | 35 | 100 | 115 | 180 | 5.44e-18 | 79.7 |
| Msa1464780 | AT5G50670.2 | 54.545 | 66 | 30 | 0 | 35 | 100 | 115 | 180 | 5.44e-18 | 79.7 |
| Msa1464780 | AT1G20980.1 | 39.655 | 116 | 69 | 1 | 35 | 149 | 134 | 249 | 4.15e-17 | 77.8 |
| Msa1464780 | AT1G02065.1 | 47.368 | 76 | 40 | 0 | 36 | 111 | 203 | 278 | 5.35e-17 | 76.6 |
| Msa1464780 | AT3G57920.1 | 49.231 | 65 | 33 | 0 | 36 | 100 | 74 | 138 | 6.25e-14 | 68.2 |
| Msa1464780 | AT2G47070.2 | 56.604 | 53 | 23 | 0 | 46 | 98 | 2 | 54 | 1.02e-13 | 68.2 |
| Msa1464780 | AT5G18830.2 | 47.458 | 59 | 31 | 0 | 36 | 94 | 153 | 211 | 7.06e-12 | 62.8 |
| Msa1464780 | AT5G18830.1 | 47.458 | 59 | 31 | 0 | 36 | 94 | 153 | 211 | 7.10e-12 | 62.8 |
| Msa1464780 | AT5G18830.3 | 47.458 | 59 | 31 | 0 | 36 | 94 | 153 | 211 | 7.40e-12 | 62.8 |
Find 20 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTTGATTGGACAGATTC+AGG | 0.307609 | tig0044627:+5623 | None:intergenic |
| CAGATTCAGGATGATATTTA+CGG | 0.380220 | tig0044627:+5636 | None:intergenic |
| ACGAAGCTGATTGACTTGAT+TGG | 0.388694 | tig0044627:+5612 | None:intergenic |
| CATCGAACTCAAACAGATCA+TGG | 0.413681 | tig0044627:+5708 | None:intergenic |
| GCAGACTTTGAATTAGCAAA+TGG | 0.463595 | tig0044627:+4703 | None:intergenic |
| TATCCAATGGTGGTTATAGC+TGG | 0.495803 | tig0044627:-5949 | Msa1464780:CDS |
| AGCATAGTCACAGTACTTGT+GGG | 0.507429 | tig0044627:+4612 | None:intergenic |
| ATCTTGTGTCATCTAAGTAT+TGG | 0.516306 | tig0044627:-6104 | Msa1464780:CDS |
| TAGTCACAGTACTTGTGGGG+GGG | 0.552379 | tig0044627:+4616 | None:intergenic |
| ACACCAGCTATAACCACCAT+TGG | 0.565825 | tig0044627:+5946 | None:intergenic |
| AAGCATAGTCACAGTACTTG+TGG | 0.569751 | tig0044627:+4611 | None:intergenic |
| GGAAAGAAATGTAAGTCCAA+TGG | 0.580565 | tig0044627:-6083 | Msa1464780:intron |
| GCTTCGTCTTCTTCATCCTG+TGG | 0.600513 | tig0044627:-5596 | Msa1464780:intron |
| AGTCTGCTACAAATTTAGCC+TGG | 0.601473 | tig0044627:-4687 | Msa1464780:CDS |
| AAGTCATTCAAAATATCCAA+TGG | 0.603959 | tig0044627:-5962 | Msa1464780:CDS |
| AATGGTGGTTATAGCTGGTG+TGG | 0.622477 | tig0044627:-5944 | Msa1464780:CDS |
| GCATAGTCACAGTACTTGTG+GGG | 0.624962 | tig0044627:+4613 | None:intergenic |
| CATAGTCACAGTACTTGTGG+GGG | 0.656382 | tig0044627:+4614 | None:intergenic |
| TCATTCAAAATATCCAATGG+TGG | 0.661479 | tig0044627:-5959 | Msa1464780:CDS |
| ATAGTCACAGTACTTGTGGG+GGG | 0.670761 | tig0044627:+4615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTTTTTTTTTTTAATGA+TGG | - | tig0044627:4931-4950 | Msa1464780:intron | 10.0% |
| !!! | GTATTTTTTTTTTTTAATGA+TGG | - | tig0044627:4931-4950 | Msa1464780:intron | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6120-6139 | None:intergenic | 100.0% |
| !! | TGTTTAGATATAATTGATAT+AGG | - | tig0044627:4900-4919 | Msa1464780:intron | 15.0% |
| !! | ATAATTTATTATTGTCAGAA+GGG | - | tig0044627:5644-5663 | Msa1464780:CDS | 15.0% |
| !! | AAATAATTATCATGATTGTT+TGG | - | tig0044627:5780-5799 | Msa1464780:intron | 15.0% |
| !! | TGTTTAGATATAATTGATAT+AGG | - | tig0044627:4900-4919 | Msa1464780:intron | 15.0% |
| !! | ATAATTTATTATTGTCAGAA+GGG | - | tig0044627:5644-5663 | Msa1464780:CDS | 15.0% |
| !! | AAATAATTATCATGATTGTT+TGG | - | tig0044627:5780-5799 | Msa1464780:intron | 15.0% |
| !!! | TTTTATTTCATGGATCTTAT+TGG | - | tig0044627:5464-5483 | Msa1464780:intron | 20.0% |
| !! | GATAATTTATTATTGTCAGA+AGG | - | tig0044627:5643-5662 | Msa1464780:CDS | 20.0% |
| !!! | ATCAAGTCTTTAAAGAATTA+AGG | - | tig0044627:5729-5748 | Msa1464780:intron | 20.0% |
| !!! | AGTTGTATTTTTACTAAATC+AGG | + | tig0044627:5881-5900 | None:intergenic | 20.0% |
| !!! | TTCAGTCTTCTAATATATTT+TGG | - | tig0044627:6013-6032 | Msa1464780:intron | 20.0% |
| !!! | TTTTATTTCATGGATCTTAT+TGG | - | tig0044627:5464-5483 | Msa1464780:intron | 20.0% |
| !! | GATAATTTATTATTGTCAGA+AGG | - | tig0044627:5643-5662 | Msa1464780:CDS | 20.0% |
| !!! | ATCAAGTCTTTAAAGAATTA+AGG | - | tig0044627:5729-5748 | Msa1464780:intron | 20.0% |
| !!! | AGTTGTATTTTTACTAAATC+AGG | + | tig0044627:5881-5900 | None:intergenic | 20.0% |
| !!! | TTCAGTCTTCTAATATATTT+TGG | - | tig0044627:6013-6032 | Msa1464780:intron | 20.0% |
| !!! | CAAAAACCTATCTTTTTCAA+GGG | - | tig0044627:4640-4659 | Msa1464780:CDS | 25.0% |
| ! | AAGTCATTCAAAATATCCAA+TGG | - | tig0044627:4805-4824 | Msa1464780:intron | 25.0% |
| !!! | TTCTGCTTGTTATCTATTAT+TGG | - | tig0044627:5204-5223 | Msa1464780:intron | 25.0% |
| ! | AATGAACATTAAATGTGATG+TGG | - | tig0044627:5378-5397 | Msa1464780:intron | 25.0% |
| !!! | TCGACTTTTCTTTTATTTCA+TGG | - | tig0044627:5454-5473 | Msa1464780:intron | 25.0% |
| ! | AATCTAGTTAGTAAAGACTT+TGG | + | tig0044627:5834-5853 | None:intergenic | 25.0% |
| !!! | ACTAAATCAGGTTTTAAAGA+TGG | + | tig0044627:5869-5888 | None:intergenic | 25.0% |
| ! | TATAACAAAACAACCAAAAG+TGG | + | tig0044627:5944-5963 | None:intergenic | 25.0% |
| !!! | GTTTTGTTATAGTTAATTGC+AGG | - | tig0044627:5953-5972 | Msa1464780:CDS | 25.0% |
| !!! | CAAAAACCTATCTTTTTCAA+GGG | - | tig0044627:4640-4659 | Msa1464780:CDS | 25.0% |
| ! | AAGTCATTCAAAATATCCAA+TGG | - | tig0044627:4805-4824 | Msa1464780:intron | 25.0% |
| !!! | TTCTGCTTGTTATCTATTAT+TGG | - | tig0044627:5204-5223 | Msa1464780:intron | 25.0% |
| ! | AATGAACATTAAATGTGATG+TGG | - | tig0044627:5378-5397 | Msa1464780:intron | 25.0% |
| !!! | TCGACTTTTCTTTTATTTCA+TGG | - | tig0044627:5454-5473 | Msa1464780:intron | 25.0% |
| ! | AATCTAGTTAGTAAAGACTT+TGG | + | tig0044627:5834-5853 | None:intergenic | 25.0% |
| !!! | ACTAAATCAGGTTTTAAAGA+TGG | + | tig0044627:5869-5888 | None:intergenic | 25.0% |
| ! | TATAACAAAACAACCAAAAG+TGG | + | tig0044627:5944-5963 | None:intergenic | 25.0% |
| !!! | GTTTTGTTATAGTTAATTGC+AGG | - | tig0044627:5953-5972 | Msa1464780:CDS | 25.0% |
| ! | CCTTGAAAAAGATAGGTTTT+TGG | + | tig0044627:4642-4661 | None:intergenic | 30.0% |
| !! | CCAAAAACCTATCTTTTTCA+AGG | - | tig0044627:4639-4658 | Msa1464780:CDS | 30.0% |
| ATCTTGTGTCATCTAAGTAT+TGG | - | tig0044627:4663-4682 | Msa1464780:CDS | 30.0% | |
| TCATTCAAAATATCCAATGG+TGG | - | tig0044627:4808-4827 | Msa1464780:intron | 30.0% | |
| ! | GATTTTGCAAAAAATGTAGC+AGG | - | tig0044627:4852-4871 | Msa1464780:intron | 30.0% |
| CAGATTCAGGATGATATTTA+CGG | + | tig0044627:5134-5153 | None:intergenic | 30.0% | |
| AATAGATAACAAGCAGAAAC+TGG | + | tig0044627:5202-5221 | None:intergenic | 30.0% | |
| !!! | TTTCATTTTTTCACGCTTAC+TGG | + | tig0044627:5268-5287 | None:intergenic | 30.0% |
| ! | AATGTTCATTGTAACTTGCA+TGG | + | tig0044627:5368-5387 | None:intergenic | 30.0% |
| TGGATACTGGATATAGTTAT+AGG | - | tig0044627:5690-5709 | Msa1464780:CDS | 30.0% | |
| !!! | ATATATTTTGGTTCTGCAGA+TGG | - | tig0044627:6025-6044 | Msa1464780:intron | 30.0% |
| ! | CCTTGAAAAAGATAGGTTTT+TGG | + | tig0044627:4642-4661 | None:intergenic | 30.0% |
| !! | CCAAAAACCTATCTTTTTCA+AGG | - | tig0044627:4639-4658 | Msa1464780:CDS | 30.0% |
| ATCTTGTGTCATCTAAGTAT+TGG | - | tig0044627:4663-4682 | Msa1464780:CDS | 30.0% | |
| TCATTCAAAATATCCAATGG+TGG | - | tig0044627:4808-4827 | Msa1464780:intron | 30.0% | |
| ! | GATTTTGCAAAAAATGTAGC+AGG | - | tig0044627:4852-4871 | Msa1464780:intron | 30.0% |
| CAGATTCAGGATGATATTTA+CGG | + | tig0044627:5134-5153 | None:intergenic | 30.0% | |
| AATAGATAACAAGCAGAAAC+TGG | + | tig0044627:5202-5221 | None:intergenic | 30.0% | |
| !!! | TTTCATTTTTTCACGCTTAC+TGG | + | tig0044627:5268-5287 | None:intergenic | 30.0% |
| ! | AATGTTCATTGTAACTTGCA+TGG | + | tig0044627:5368-5387 | None:intergenic | 30.0% |
| TGGATACTGGATATAGTTAT+AGG | - | tig0044627:5690-5709 | Msa1464780:CDS | 30.0% | |
| !!! | ATATATTTTGGTTCTGCAGA+TGG | - | tig0044627:6025-6044 | Msa1464780:intron | 30.0% |
| CAAGATCCCTTGAAAAAGAT+AGG | + | tig0044627:4649-4668 | None:intergenic | 35.0% | |
| GGAAAGAAATGTAAGTCCAA+TGG | - | tig0044627:4684-4703 | Msa1464780:CDS | 35.0% | |
| GATAATCTTTGGCCAATGAA+AGG | + | tig0044627:4763-4782 | None:intergenic | 35.0% | |
| ACGTATGCGATGATAATCTT+TGG | + | tig0044627:4774-4793 | None:intergenic | 35.0% | |
| !!! | AACAAACTTGCTGTCTTTTC+TGG | - | tig0044627:5000-5019 | Msa1464780:intron | 35.0% |
| ATACAAGGGGTTCAAAAGAT+AGG | + | tig0044627:5427-5446 | None:intergenic | 35.0% | |
| AACATGACTATTACTGTGCA+TGG | + | tig0044627:5594-5613 | None:intergenic | 35.0% | |
| ! | GATGTTGCTATTAGAGTTGT+GGG | - | tig0044627:5666-5685 | Msa1464780:CDS | 35.0% |
| ! | GTTAGTAAAGACTTTGGCTT+AGG | + | tig0044627:5828-5847 | None:intergenic | 35.0% |
| GTCAAAACTTAGACCAAAGA+AGG | - | tig0044627:5917-5936 | Msa1464780:CDS | 35.0% | |
| GCAGACTTTGAATTAGCAAA+TGG | + | tig0044627:6067-6086 | None:intergenic | 35.0% | |
| CAAGATCCCTTGAAAAAGAT+AGG | + | tig0044627:4649-4668 | None:intergenic | 35.0% | |
| GGAAAGAAATGTAAGTCCAA+TGG | - | tig0044627:4684-4703 | Msa1464780:CDS | 35.0% | |
| GATAATCTTTGGCCAATGAA+AGG | + | tig0044627:4763-4782 | None:intergenic | 35.0% | |
| ACGTATGCGATGATAATCTT+TGG | + | tig0044627:4774-4793 | None:intergenic | 35.0% | |
| !!! | AACAAACTTGCTGTCTTTTC+TGG | - | tig0044627:5000-5019 | Msa1464780:intron | 35.0% |
| ATACAAGGGGTTCAAAAGAT+AGG | + | tig0044627:5427-5446 | None:intergenic | 35.0% | |
| AACATGACTATTACTGTGCA+TGG | + | tig0044627:5594-5613 | None:intergenic | 35.0% | |
| ! | GATGTTGCTATTAGAGTTGT+GGG | - | tig0044627:5666-5685 | Msa1464780:CDS | 35.0% |
| ! | GTTAGTAAAGACTTTGGCTT+AGG | + | tig0044627:5828-5847 | None:intergenic | 35.0% |
| GTCAAAACTTAGACCAAAGA+AGG | - | tig0044627:5917-5936 | Msa1464780:CDS | 35.0% | |
| GCAGACTTTGAATTAGCAAA+TGG | + | tig0044627:6067-6086 | None:intergenic | 35.0% | |
| ACGTCATATGTTCTGACCAT+TGG | + | tig0044627:4703-4722 | None:intergenic | 40.0% | |
| AGGTCACACAACTTTCAAAC+AGG | + | tig0044627:4737-4756 | None:intergenic | 40.0% | |
| TATCCAATGGTGGTTATAGC+TGG | - | tig0044627:4818-4837 | Msa1464780:intron | 40.0% | |
| !!! | AACTTGCTGTCTTTTCTGGA+TGG | - | tig0044627:5004-5023 | Msa1464780:intron | 40.0% |
| CATCGAACTCAAACAGATCA+TGG | + | tig0044627:5062-5081 | None:intergenic | 40.0% | |
| TGACTTGATTGGACAGATTC+AGG | + | tig0044627:5147-5166 | None:intergenic | 40.0% | |
| !! | ACGAAGCTGATTGACTTGAT+TGG | + | tig0044627:5158-5177 | None:intergenic | 40.0% |
| TAATACCAGTAAGCGTGATG+TGG | - | tig0044627:5298-5317 | Msa1464780:intron | 40.0% | |
| AAGTCGAGCAGAACATACAA+GGG | + | tig0044627:5441-5460 | None:intergenic | 40.0% | |
| AAAGTCGAGCAGAACATACA+AGG | + | tig0044627:5442-5461 | None:intergenic | 40.0% | |
| TAACTGTCAACACGTTTCGA+TGG | - | tig0044627:5492-5511 | Msa1464780:intron | 40.0% | |
| AACACGTTTCGATGGTAAAG+AGG | - | tig0044627:5500-5519 | Msa1464780:intron | 40.0% | |
| ! | GGATGTTGCTATTAGAGTTG+TGG | - | tig0044627:5665-5684 | Msa1464780:CDS | 40.0% |
| ! | TTGCTATTAGAGTTGTGGGA+TGG | - | tig0044627:5670-5689 | Msa1464780:CDS | 40.0% |
| TTTGTATCGTGCCGTAATCA+GGG | + | tig0044627:5763-5782 | None:intergenic | 40.0% | |
| ATTTGTATCGTGCCGTAATC+AGG | + | tig0044627:5764-5783 | None:intergenic | 40.0% | |
| AACCAAAAGTGGACCTTCTT+TGG | + | tig0044627:5933-5952 | None:intergenic | 40.0% | |
| AGTCTGCTACAAATTTAGCC+TGG | - | tig0044627:6080-6099 | Msa1464780:intron | 40.0% | |
| AGCATAGTCACAGTACTTGT+GGG | + | tig0044627:6158-6177 | None:intergenic | 40.0% | |
| AAGCATAGTCACAGTACTTG+TGG | + | tig0044627:6159-6178 | None:intergenic | 40.0% | |
| ACGTCATATGTTCTGACCAT+TGG | + | tig0044627:4703-4722 | None:intergenic | 40.0% | |
| AGGTCACACAACTTTCAAAC+AGG | + | tig0044627:4737-4756 | None:intergenic | 40.0% | |
| TATCCAATGGTGGTTATAGC+TGG | - | tig0044627:4818-4837 | Msa1464780:intron | 40.0% | |
| !!! | AACTTGCTGTCTTTTCTGGA+TGG | - | tig0044627:5004-5023 | Msa1464780:intron | 40.0% |
| CATCGAACTCAAACAGATCA+TGG | + | tig0044627:5062-5081 | None:intergenic | 40.0% | |
| TGACTTGATTGGACAGATTC+AGG | + | tig0044627:5147-5166 | None:intergenic | 40.0% | |
| !! | ACGAAGCTGATTGACTTGAT+TGG | + | tig0044627:5158-5177 | None:intergenic | 40.0% |
| TAATACCAGTAAGCGTGATG+TGG | - | tig0044627:5298-5317 | Msa1464780:intron | 40.0% | |
| AAGTCGAGCAGAACATACAA+GGG | + | tig0044627:5441-5460 | None:intergenic | 40.0% | |
| AAAGTCGAGCAGAACATACA+AGG | + | tig0044627:5442-5461 | None:intergenic | 40.0% | |
| TAACTGTCAACACGTTTCGA+TGG | - | tig0044627:5492-5511 | Msa1464780:intron | 40.0% | |
| AACACGTTTCGATGGTAAAG+AGG | - | tig0044627:5500-5519 | Msa1464780:intron | 40.0% | |
| ! | GGATGTTGCTATTAGAGTTG+TGG | - | tig0044627:5665-5684 | Msa1464780:CDS | 40.0% |
| ! | TTGCTATTAGAGTTGTGGGA+TGG | - | tig0044627:5670-5689 | Msa1464780:CDS | 40.0% |
| TTTGTATCGTGCCGTAATCA+GGG | + | tig0044627:5763-5782 | None:intergenic | 40.0% | |
| ATTTGTATCGTGCCGTAATC+AGG | + | tig0044627:5764-5783 | None:intergenic | 40.0% | |
| AACCAAAAGTGGACCTTCTT+TGG | + | tig0044627:5933-5952 | None:intergenic | 40.0% | |
| AGTCTGCTACAAATTTAGCC+TGG | - | tig0044627:6080-6099 | Msa1464780:intron | 40.0% | |
| AGCATAGTCACAGTACTTGT+GGG | + | tig0044627:6158-6177 | None:intergenic | 40.0% | |
| AAGCATAGTCACAGTACTTG+TGG | + | tig0044627:6159-6178 | None:intergenic | 40.0% | |
| CTTTCAAACAGGCAGCATGA+CGG | + | tig0044627:4726-4745 | None:intergenic | 45.0% | |
| GTGTGACCTTGACCTTTCAT+TGG | - | tig0044627:4748-4767 | Msa1464780:intron | 45.0% | |
| CTTTGGCCAATGAAAGGTCA+AGG | + | tig0044627:4757-4776 | None:intergenic | 45.0% | |
| ACACCAGCTATAACCACCAT+TGG | + | tig0044627:4824-4843 | None:intergenic | 45.0% | |
| AATGGTGGTTATAGCTGGTG+TGG | - | tig0044627:4823-4842 | Msa1464780:intron | 45.0% | |
| GCAGAAACTGGTATTACCAC+AGG | + | tig0044627:5190-5209 | None:intergenic | 45.0% | |
| AGTCGAGCAGAACATACAAG+GGG | + | tig0044627:5440-5459 | None:intergenic | 45.0% | |
| TAGAGTTGTGGGATGGATAC+TGG | - | tig0044627:5677-5696 | Msa1464780:CDS | 45.0% | |
| AGGTAGCATACCCCTGATTA+CGG | - | tig0044627:5749-5768 | Msa1464780:intron | 45.0% | |
| TTGTATCGTGCCGTAATCAG+GGG | + | tig0044627:5762-5781 | None:intergenic | 45.0% | |
| ! | GACCAAAGAAGGTCCACTTT+TGG | - | tig0044627:5928-5947 | Msa1464780:CDS | 45.0% |
| ATAGTCACAGTACTTGTGGG+GGG | + | tig0044627:6155-6174 | None:intergenic | 45.0% | |
| CATAGTCACAGTACTTGTGG+GGG | + | tig0044627:6156-6175 | None:intergenic | 45.0% | |
| GCATAGTCACAGTACTTGTG+GGG | + | tig0044627:6157-6176 | None:intergenic | 45.0% | |
| CTTTCAAACAGGCAGCATGA+CGG | + | tig0044627:4726-4745 | None:intergenic | 45.0% | |
| GTGTGACCTTGACCTTTCAT+TGG | - | tig0044627:4748-4767 | Msa1464780:intron | 45.0% | |
| CTTTGGCCAATGAAAGGTCA+AGG | + | tig0044627:4757-4776 | None:intergenic | 45.0% | |
| ACACCAGCTATAACCACCAT+TGG | + | tig0044627:4824-4843 | None:intergenic | 45.0% | |
| AATGGTGGTTATAGCTGGTG+TGG | - | tig0044627:4823-4842 | Msa1464780:intron | 45.0% | |
| GCAGAAACTGGTATTACCAC+AGG | + | tig0044627:5190-5209 | None:intergenic | 45.0% | |
| AGTCGAGCAGAACATACAAG+GGG | + | tig0044627:5440-5459 | None:intergenic | 45.0% | |
| TAGAGTTGTGGGATGGATAC+TGG | - | tig0044627:5677-5696 | Msa1464780:CDS | 45.0% | |
| AGGTAGCATACCCCTGATTA+CGG | - | tig0044627:5749-5768 | Msa1464780:intron | 45.0% | |
| TTGTATCGTGCCGTAATCAG+GGG | + | tig0044627:5762-5781 | None:intergenic | 45.0% | |
| ! | GACCAAAGAAGGTCCACTTT+TGG | - | tig0044627:5928-5947 | Msa1464780:CDS | 45.0% |
| ATAGTCACAGTACTTGTGGG+GGG | + | tig0044627:6155-6174 | None:intergenic | 45.0% | |
| CATAGTCACAGTACTTGTGG+GGG | + | tig0044627:6156-6175 | None:intergenic | 45.0% | |
| GCATAGTCACAGTACTTGTG+GGG | + | tig0044627:6157-6176 | None:intergenic | 45.0% | |
| GCTTCGTCTTCTTCATCCTG+TGG | - | tig0044627:5171-5190 | Msa1464780:intron | 50.0% | |
| TTCTGCCACATCACGCTTAC+TGG | + | tig0044627:5306-5325 | None:intergenic | 50.0% | |
| ! | GCTGTTGTGCATGTTTTGCC+AGG | + | tig0044627:6101-6120 | None:intergenic | 50.0% |
| TAGTCACAGTACTTGTGGGG+GGG | + | tig0044627:6154-6173 | None:intergenic | 50.0% | |
| GCTTCGTCTTCTTCATCCTG+TGG | - | tig0044627:5171-5190 | Msa1464780:intron | 50.0% | |
| TTCTGCCACATCACGCTTAC+TGG | + | tig0044627:5306-5325 | None:intergenic | 50.0% | |
| ! | GCTGTTGTGCATGTTTTGCC+AGG | + | tig0044627:6101-6120 | None:intergenic | 50.0% |
| TAGTCACAGTACTTGTGGGG+GGG | + | tig0044627:6154-6173 | None:intergenic | 50.0% | |
| AGTCACAGTACTTGTGGGGG+GGG | + | tig0044627:6153-6172 | None:intergenic | 55.0% | |
| AGTCACAGTACTTGTGGGGG+GGG | + | tig0044627:6153-6172 | None:intergenic | 55.0% | |
| TCACAGTACTTGTGGGGGGG+GGG | + | tig0044627:6151-6170 | None:intergenic | 60.0% | |
| GTCACAGTACTTGTGGGGGG+GGG | + | tig0044627:6152-6171 | None:intergenic | 60.0% | |
| TCACAGTACTTGTGGGGGGG+GGG | + | tig0044627:6151-6170 | None:intergenic | 60.0% | |
| GTCACAGTACTTGTGGGGGG+GGG | + | tig0044627:6152-6171 | None:intergenic | 60.0% | |
| ACAGTACTTGTGGGGGGGGG+GGG | + | tig0044627:6149-6168 | None:intergenic | 65.0% | |
| CACAGTACTTGTGGGGGGGG+GGG | + | tig0044627:6150-6169 | None:intergenic | 65.0% | |
| ACAGTACTTGTGGGGGGGGG+GGG | + | tig0044627:6149-6168 | None:intergenic | 65.0% | |
| CACAGTACTTGTGGGGGGGG+GGG | + | tig0044627:6150-6169 | None:intergenic | 65.0% | |
| AGTACTTGTGGGGGGGGGGG+GGG | + | tig0044627:6147-6166 | None:intergenic | 70.0% | |
| CAGTACTTGTGGGGGGGGGG+GGG | + | tig0044627:6148-6167 | None:intergenic | 70.0% | |
| AGTACTTGTGGGGGGGGGGG+GGG | + | tig0044627:6147-6166 | None:intergenic | 70.0% | |
| CAGTACTTGTGGGGGGGGGG+GGG | + | tig0044627:6148-6167 | None:intergenic | 70.0% | |
| TACTTGTGGGGGGGGGGGGG+GGG | + | tig0044627:6145-6164 | None:intergenic | 75.0% | |
| GTACTTGTGGGGGGGGGGGG+GGG | + | tig0044627:6146-6165 | None:intergenic | 75.0% | |
| TACTTGTGGGGGGGGGGGGG+GGG | + | tig0044627:6145-6164 | None:intergenic | 75.0% | |
| GTACTTGTGGGGGGGGGGGG+GGG | + | tig0044627:6146-6165 | None:intergenic | 75.0% | |
| ! | ACTTGTGGGGGGGGGGGGGG+GGG | + | tig0044627:6144-6163 | None:intergenic | 80.0% |
| ! | ACTTGTGGGGGGGGGGGGGG+GGG | + | tig0044627:6144-6163 | None:intergenic | 80.0% |
| ! | TTGTGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6142-6161 | None:intergenic | 85.0% |
| ! | CTTGTGGGGGGGGGGGGGGG+GGG | + | tig0044627:6143-6162 | None:intergenic | 85.0% |
| ! | TTGTGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6142-6161 | None:intergenic | 85.0% |
| ! | CTTGTGGGGGGGGGGGGGGG+GGG | + | tig0044627:6143-6162 | None:intergenic | 85.0% |
| ! | TGTGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6141-6160 | None:intergenic | 90.0% |
| ! | TGTGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6141-6160 | None:intergenic | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6139-6158 | None:intergenic | 95.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6140-6159 | None:intergenic | 95.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6139-6158 | None:intergenic | 95.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | + | tig0044627:6140-6159 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0044627 | gene | 4603 | 6186 | 4603 | ID=Msa1464780;Name=Msa1464780 |
| tig0044627 | mRNA | 4603 | 6186 | 4603 | ID=Msa1464780-mRNA-1;Parent=Msa1464780;Name=Msa1464780-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|0|0.25|4|0|159 |
| tig0044627 | exon | 6084 | 6186 | 6084 | ID=Msa1464780-mRNA-1:exon:24574;Parent=Msa1464780-mRNA-1 |
| tig0044627 | exon | 5916 | 6012 | 5916 | ID=Msa1464780-mRNA-1:exon:24573;Parent=Msa1464780-mRNA-1 |
| tig0044627 | exon | 5597 | 5733 | 5597 | ID=Msa1464780-mRNA-1:exon:24572;Parent=Msa1464780-mRNA-1 |
| tig0044627 | exon | 4603 | 4745 | 4603 | ID=Msa1464780-mRNA-1:exon:24571;Parent=Msa1464780-mRNA-1 |
| tig0044627 | CDS | 6084 | 6186 | 6084 | ID=Msa1464780-mRNA-1:cds;Parent=Msa1464780-mRNA-1 |
| tig0044627 | CDS | 5916 | 6012 | 5916 | ID=Msa1464780-mRNA-1:cds;Parent=Msa1464780-mRNA-1 |
| tig0044627 | CDS | 5597 | 5733 | 5597 | ID=Msa1464780-mRNA-1:cds;Parent=Msa1464780-mRNA-1 |
| tig0044627 | CDS | 4603 | 4745 | 4603 | ID=Msa1464780-mRNA-1:cds;Parent=Msa1464780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
