AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1464780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464780 MtrunA17_Chr8g0377421 56.098 164 49 1 1 141 89 252 1.35e-53 171
Msa1464780 MtrunA17_Chr3g0122411 56.911 123 48 1 19 141 168 285 1.33e-38 135
Msa1464780 MtrunA17_Chr8g0360361 59.722 72 29 0 36 107 80 151 2.78e-24 92.8
Msa1464780 MtrunA17_Chr8g0377401 52.128 94 22 1 25 95 143 236 2.89e-24 94.7
Msa1464780 MtrunA17_Chr3g0132091 47.959 98 49 1 35 132 87 182 1.13e-22 92.0
Msa1464780 MtrunA17_Chr4g0061651 52.778 72 32 1 35 106 137 206 3.62e-20 85.9
Msa1464780 MtrunA17_Chr7g0231911 54.930 71 32 0 35 105 163 233 9.08e-20 83.6
Msa1464780 MtrunA17_Chr8g0386271 51.111 90 41 2 35 124 113 199 9.22e-20 84.3
Msa1464780 MtrunA17_Chr4g0046991 57.143 63 27 0 32 94 84 146 4.06e-19 79.0
Msa1464780 MtrunA17_Chr7g0224821 54.545 66 30 0 35 100 91 156 4.64e-19 82.4
Msa1464780 MtrunA17_Chr7g0258471 50.000 80 40 0 36 115 157 236 6.95e-19 82.0
Msa1464780 MtrunA17_Chr2g0302791 53.731 67 31 0 33 99 151 217 7.84e-19 82.4
Msa1464780 MtrunA17_Chr1g0162871 51.351 74 36 0 32 105 115 188 8.78e-19 82.4
Msa1464780 MtrunA17_Chr2g0308321 56.667 60 26 0 35 94 185 244 3.02e-18 80.5
Msa1464780 MtrunA17_Chr1g0194121 52.174 69 33 0 32 100 158 226 5.08e-18 80.1
Msa1464780 MtrunA17_Chr5g0420051 56.452 62 27 0 33 94 193 254 5.62e-18 79.7
Msa1464780 MtrunA17_Chr7g0270541 51.471 68 33 0 33 100 157 224 3.09e-17 77.8
Msa1464780 MtrunA17_Chr8g0334671 56.923 65 27 1 36 99 202 266 7.87e-17 75.9
Msa1464780 MtrunA17_Chr2g0282521 52.381 63 30 0 36 98 79 141 1.15e-16 72.0
Msa1464780 MtrunA17_Chr2g0286661 41.860 86 44 1 36 115 118 203 4.30e-15 71.6
Msa1464780 MtrunA17_Chr8g0377431 41.667 96 34 1 3 76 111 206 1.25e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464780 AT5G43270.3 60.000 75 27 1 23 97 174 245 2.44e-23 95.1
Msa1464780 AT5G43270.1 60.000 75 27 1 23 97 174 245 2.44e-23 95.1
Msa1464780 AT5G43270.2 60.000 75 27 1 23 97 174 245 2.44e-23 95.1
Msa1464780 AT1G27370.6 63.235 68 23 1 33 100 188 253 4.10e-22 90.9
Msa1464780 AT1G27370.1 63.235 68 23 1 33 100 188 253 7.15e-22 90.9
Msa1464780 AT1G27370.5 63.235 68 23 1 33 100 188 253 7.15e-22 90.9
Msa1464780 AT1G27370.3 63.235 68 23 1 33 100 188 253 7.15e-22 90.9
Msa1464780 AT1G27370.2 63.235 68 23 1 33 100 188 253 7.15e-22 90.9
Msa1464780 AT1G27370.4 63.235 68 23 1 33 100 188 253 7.15e-22 90.9
Msa1464780 AT1G27370.7 63.235 68 23 1 33 100 188 253 7.15e-22 90.9
Msa1464780 AT3G60030.1 47.561 82 43 0 32 113 138 219 1.07e-20 88.2
Msa1464780 AT1G69170.1 59.677 62 25 0 33 94 136 197 1.45e-19 84.3
Msa1464780 AT1G53160.3 53.521 71 33 0 36 106 69 139 1.63e-19 80.5
Msa1464780 AT1G53160.2 53.521 71 33 0 36 106 69 139 1.80e-19 80.5
Msa1464780 AT1G53160.1 53.521 71 33 0 36 106 69 139 1.80e-19 80.5
Msa1464780 AT2G47070.1 56.716 67 29 0 32 98 117 183 2.68e-19 84.3
Msa1464780 AT1G27360.2 62.712 59 22 0 36 94 190 248 6.83e-19 82.4
Msa1464780 AT1G27360.1 62.712 59 22 0 36 94 190 248 6.83e-19 82.4
Msa1464780 AT1G27360.3 62.712 59 22 0 36 94 190 248 6.83e-19 82.4
Msa1464780 AT1G27360.4 62.712 59 22 0 36 94 190 248 6.83e-19 82.4
Msa1464780 AT3G15270.1 52.941 68 32 0 32 99 74 141 2.25e-18 77.8
Msa1464780 AT1G76580.2 51.282 78 33 1 25 102 123 195 3.47e-18 80.9
Msa1464780 AT1G76580.3 51.282 78 33 1 25 102 123 195 3.75e-18 80.9
Msa1464780 AT2G33810.1 55.556 63 28 0 32 94 65 127 3.82e-18 76.3
Msa1464780 AT2G42200.1 56.923 65 28 0 36 100 89 153 4.81e-18 80.1
Msa1464780 AT1G76580.1 50.000 82 36 1 25 106 123 199 4.92e-18 80.5
Msa1464780 AT5G50570.1 54.545 66 30 0 35 100 115 180 5.44e-18 79.7
Msa1464780 AT5G50570.2 54.545 66 30 0 35 100 115 180 5.44e-18 79.7
Msa1464780 AT5G50670.1 54.545 66 30 0 35 100 115 180 5.44e-18 79.7
Msa1464780 AT5G50670.2 54.545 66 30 0 35 100 115 180 5.44e-18 79.7
Msa1464780 AT1G20980.1 39.655 116 69 1 35 149 134 249 4.15e-17 77.8
Msa1464780 AT1G02065.1 47.368 76 40 0 36 111 203 278 5.35e-17 76.6
Msa1464780 AT3G57920.1 49.231 65 33 0 36 100 74 138 6.25e-14 68.2
Msa1464780 AT2G47070.2 56.604 53 23 0 46 98 2 54 1.02e-13 68.2
Msa1464780 AT5G18830.2 47.458 59 31 0 36 94 153 211 7.06e-12 62.8
Msa1464780 AT5G18830.1 47.458 59 31 0 36 94 153 211 7.10e-12 62.8
Msa1464780 AT5G18830.3 47.458 59 31 0 36 94 153 211 7.40e-12 62.8

Find 20 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTTGATTGGACAGATTC+AGG 0.307609 tig0044627:+5623 None:intergenic
CAGATTCAGGATGATATTTA+CGG 0.380220 tig0044627:+5636 None:intergenic
ACGAAGCTGATTGACTTGAT+TGG 0.388694 tig0044627:+5612 None:intergenic
CATCGAACTCAAACAGATCA+TGG 0.413681 tig0044627:+5708 None:intergenic
GCAGACTTTGAATTAGCAAA+TGG 0.463595 tig0044627:+4703 None:intergenic
TATCCAATGGTGGTTATAGC+TGG 0.495803 tig0044627:-5949 Msa1464780:CDS
AGCATAGTCACAGTACTTGT+GGG 0.507429 tig0044627:+4612 None:intergenic
ATCTTGTGTCATCTAAGTAT+TGG 0.516306 tig0044627:-6104 Msa1464780:CDS
TAGTCACAGTACTTGTGGGG+GGG 0.552379 tig0044627:+4616 None:intergenic
ACACCAGCTATAACCACCAT+TGG 0.565825 tig0044627:+5946 None:intergenic
AAGCATAGTCACAGTACTTG+TGG 0.569751 tig0044627:+4611 None:intergenic
GGAAAGAAATGTAAGTCCAA+TGG 0.580565 tig0044627:-6083 Msa1464780:intron
GCTTCGTCTTCTTCATCCTG+TGG 0.600513 tig0044627:-5596 Msa1464780:intron
AGTCTGCTACAAATTTAGCC+TGG 0.601473 tig0044627:-4687 Msa1464780:CDS
AAGTCATTCAAAATATCCAA+TGG 0.603959 tig0044627:-5962 Msa1464780:CDS
AATGGTGGTTATAGCTGGTG+TGG 0.622477 tig0044627:-5944 Msa1464780:CDS
GCATAGTCACAGTACTTGTG+GGG 0.624962 tig0044627:+4613 None:intergenic
CATAGTCACAGTACTTGTGG+GGG 0.656382 tig0044627:+4614 None:intergenic
TCATTCAAAATATCCAATGG+TGG 0.661479 tig0044627:-5959 Msa1464780:CDS
ATAGTCACAGTACTTGTGGG+GGG 0.670761 tig0044627:+4615 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTTTTTTTTTTTAATGA+TGG - tig0044627:4931-4950 Msa1464780:intron 10.0%
!!! GTATTTTTTTTTTTTAATGA+TGG - tig0044627:4931-4950 Msa1464780:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6120-6139 None:intergenic 100.0%
!! TGTTTAGATATAATTGATAT+AGG - tig0044627:4900-4919 Msa1464780:intron 15.0%
!! ATAATTTATTATTGTCAGAA+GGG - tig0044627:5644-5663 Msa1464780:CDS 15.0%
!! AAATAATTATCATGATTGTT+TGG - tig0044627:5780-5799 Msa1464780:intron 15.0%
!! TGTTTAGATATAATTGATAT+AGG - tig0044627:4900-4919 Msa1464780:intron 15.0%
!! ATAATTTATTATTGTCAGAA+GGG - tig0044627:5644-5663 Msa1464780:CDS 15.0%
!! AAATAATTATCATGATTGTT+TGG - tig0044627:5780-5799 Msa1464780:intron 15.0%
!!! TTTTATTTCATGGATCTTAT+TGG - tig0044627:5464-5483 Msa1464780:intron 20.0%
!! GATAATTTATTATTGTCAGA+AGG - tig0044627:5643-5662 Msa1464780:CDS 20.0%
!!! ATCAAGTCTTTAAAGAATTA+AGG - tig0044627:5729-5748 Msa1464780:intron 20.0%
!!! AGTTGTATTTTTACTAAATC+AGG + tig0044627:5881-5900 None:intergenic 20.0%
!!! TTCAGTCTTCTAATATATTT+TGG - tig0044627:6013-6032 Msa1464780:intron 20.0%
!!! TTTTATTTCATGGATCTTAT+TGG - tig0044627:5464-5483 Msa1464780:intron 20.0%
!! GATAATTTATTATTGTCAGA+AGG - tig0044627:5643-5662 Msa1464780:CDS 20.0%
!!! ATCAAGTCTTTAAAGAATTA+AGG - tig0044627:5729-5748 Msa1464780:intron 20.0%
!!! AGTTGTATTTTTACTAAATC+AGG + tig0044627:5881-5900 None:intergenic 20.0%
!!! TTCAGTCTTCTAATATATTT+TGG - tig0044627:6013-6032 Msa1464780:intron 20.0%
!!! CAAAAACCTATCTTTTTCAA+GGG - tig0044627:4640-4659 Msa1464780:CDS 25.0%
! AAGTCATTCAAAATATCCAA+TGG - tig0044627:4805-4824 Msa1464780:intron 25.0%
!!! TTCTGCTTGTTATCTATTAT+TGG - tig0044627:5204-5223 Msa1464780:intron 25.0%
! AATGAACATTAAATGTGATG+TGG - tig0044627:5378-5397 Msa1464780:intron 25.0%
!!! TCGACTTTTCTTTTATTTCA+TGG - tig0044627:5454-5473 Msa1464780:intron 25.0%
! AATCTAGTTAGTAAAGACTT+TGG + tig0044627:5834-5853 None:intergenic 25.0%
!!! ACTAAATCAGGTTTTAAAGA+TGG + tig0044627:5869-5888 None:intergenic 25.0%
! TATAACAAAACAACCAAAAG+TGG + tig0044627:5944-5963 None:intergenic 25.0%
!!! GTTTTGTTATAGTTAATTGC+AGG - tig0044627:5953-5972 Msa1464780:CDS 25.0%
!!! CAAAAACCTATCTTTTTCAA+GGG - tig0044627:4640-4659 Msa1464780:CDS 25.0%
! AAGTCATTCAAAATATCCAA+TGG - tig0044627:4805-4824 Msa1464780:intron 25.0%
!!! TTCTGCTTGTTATCTATTAT+TGG - tig0044627:5204-5223 Msa1464780:intron 25.0%
! AATGAACATTAAATGTGATG+TGG - tig0044627:5378-5397 Msa1464780:intron 25.0%
!!! TCGACTTTTCTTTTATTTCA+TGG - tig0044627:5454-5473 Msa1464780:intron 25.0%
! AATCTAGTTAGTAAAGACTT+TGG + tig0044627:5834-5853 None:intergenic 25.0%
!!! ACTAAATCAGGTTTTAAAGA+TGG + tig0044627:5869-5888 None:intergenic 25.0%
! TATAACAAAACAACCAAAAG+TGG + tig0044627:5944-5963 None:intergenic 25.0%
!!! GTTTTGTTATAGTTAATTGC+AGG - tig0044627:5953-5972 Msa1464780:CDS 25.0%
! CCTTGAAAAAGATAGGTTTT+TGG + tig0044627:4642-4661 None:intergenic 30.0%
!! CCAAAAACCTATCTTTTTCA+AGG - tig0044627:4639-4658 Msa1464780:CDS 30.0%
ATCTTGTGTCATCTAAGTAT+TGG - tig0044627:4663-4682 Msa1464780:CDS 30.0%
TCATTCAAAATATCCAATGG+TGG - tig0044627:4808-4827 Msa1464780:intron 30.0%
! GATTTTGCAAAAAATGTAGC+AGG - tig0044627:4852-4871 Msa1464780:intron 30.0%
CAGATTCAGGATGATATTTA+CGG + tig0044627:5134-5153 None:intergenic 30.0%
AATAGATAACAAGCAGAAAC+TGG + tig0044627:5202-5221 None:intergenic 30.0%
!!! TTTCATTTTTTCACGCTTAC+TGG + tig0044627:5268-5287 None:intergenic 30.0%
! AATGTTCATTGTAACTTGCA+TGG + tig0044627:5368-5387 None:intergenic 30.0%
TGGATACTGGATATAGTTAT+AGG - tig0044627:5690-5709 Msa1464780:CDS 30.0%
!!! ATATATTTTGGTTCTGCAGA+TGG - tig0044627:6025-6044 Msa1464780:intron 30.0%
! CCTTGAAAAAGATAGGTTTT+TGG + tig0044627:4642-4661 None:intergenic 30.0%
!! CCAAAAACCTATCTTTTTCA+AGG - tig0044627:4639-4658 Msa1464780:CDS 30.0%
ATCTTGTGTCATCTAAGTAT+TGG - tig0044627:4663-4682 Msa1464780:CDS 30.0%
TCATTCAAAATATCCAATGG+TGG - tig0044627:4808-4827 Msa1464780:intron 30.0%
! GATTTTGCAAAAAATGTAGC+AGG - tig0044627:4852-4871 Msa1464780:intron 30.0%
CAGATTCAGGATGATATTTA+CGG + tig0044627:5134-5153 None:intergenic 30.0%
AATAGATAACAAGCAGAAAC+TGG + tig0044627:5202-5221 None:intergenic 30.0%
!!! TTTCATTTTTTCACGCTTAC+TGG + tig0044627:5268-5287 None:intergenic 30.0%
! AATGTTCATTGTAACTTGCA+TGG + tig0044627:5368-5387 None:intergenic 30.0%
TGGATACTGGATATAGTTAT+AGG - tig0044627:5690-5709 Msa1464780:CDS 30.0%
!!! ATATATTTTGGTTCTGCAGA+TGG - tig0044627:6025-6044 Msa1464780:intron 30.0%
CAAGATCCCTTGAAAAAGAT+AGG + tig0044627:4649-4668 None:intergenic 35.0%
GGAAAGAAATGTAAGTCCAA+TGG - tig0044627:4684-4703 Msa1464780:CDS 35.0%
GATAATCTTTGGCCAATGAA+AGG + tig0044627:4763-4782 None:intergenic 35.0%
ACGTATGCGATGATAATCTT+TGG + tig0044627:4774-4793 None:intergenic 35.0%
!!! AACAAACTTGCTGTCTTTTC+TGG - tig0044627:5000-5019 Msa1464780:intron 35.0%
ATACAAGGGGTTCAAAAGAT+AGG + tig0044627:5427-5446 None:intergenic 35.0%
AACATGACTATTACTGTGCA+TGG + tig0044627:5594-5613 None:intergenic 35.0%
! GATGTTGCTATTAGAGTTGT+GGG - tig0044627:5666-5685 Msa1464780:CDS 35.0%
! GTTAGTAAAGACTTTGGCTT+AGG + tig0044627:5828-5847 None:intergenic 35.0%
GTCAAAACTTAGACCAAAGA+AGG - tig0044627:5917-5936 Msa1464780:CDS 35.0%
GCAGACTTTGAATTAGCAAA+TGG + tig0044627:6067-6086 None:intergenic 35.0%
CAAGATCCCTTGAAAAAGAT+AGG + tig0044627:4649-4668 None:intergenic 35.0%
GGAAAGAAATGTAAGTCCAA+TGG - tig0044627:4684-4703 Msa1464780:CDS 35.0%
GATAATCTTTGGCCAATGAA+AGG + tig0044627:4763-4782 None:intergenic 35.0%
ACGTATGCGATGATAATCTT+TGG + tig0044627:4774-4793 None:intergenic 35.0%
!!! AACAAACTTGCTGTCTTTTC+TGG - tig0044627:5000-5019 Msa1464780:intron 35.0%
ATACAAGGGGTTCAAAAGAT+AGG + tig0044627:5427-5446 None:intergenic 35.0%
AACATGACTATTACTGTGCA+TGG + tig0044627:5594-5613 None:intergenic 35.0%
! GATGTTGCTATTAGAGTTGT+GGG - tig0044627:5666-5685 Msa1464780:CDS 35.0%
! GTTAGTAAAGACTTTGGCTT+AGG + tig0044627:5828-5847 None:intergenic 35.0%
GTCAAAACTTAGACCAAAGA+AGG - tig0044627:5917-5936 Msa1464780:CDS 35.0%
GCAGACTTTGAATTAGCAAA+TGG + tig0044627:6067-6086 None:intergenic 35.0%
ACGTCATATGTTCTGACCAT+TGG + tig0044627:4703-4722 None:intergenic 40.0%
AGGTCACACAACTTTCAAAC+AGG + tig0044627:4737-4756 None:intergenic 40.0%
TATCCAATGGTGGTTATAGC+TGG - tig0044627:4818-4837 Msa1464780:intron 40.0%
!!! AACTTGCTGTCTTTTCTGGA+TGG - tig0044627:5004-5023 Msa1464780:intron 40.0%
CATCGAACTCAAACAGATCA+TGG + tig0044627:5062-5081 None:intergenic 40.0%
TGACTTGATTGGACAGATTC+AGG + tig0044627:5147-5166 None:intergenic 40.0%
!! ACGAAGCTGATTGACTTGAT+TGG + tig0044627:5158-5177 None:intergenic 40.0%
TAATACCAGTAAGCGTGATG+TGG - tig0044627:5298-5317 Msa1464780:intron 40.0%
AAGTCGAGCAGAACATACAA+GGG + tig0044627:5441-5460 None:intergenic 40.0%
AAAGTCGAGCAGAACATACA+AGG + tig0044627:5442-5461 None:intergenic 40.0%
TAACTGTCAACACGTTTCGA+TGG - tig0044627:5492-5511 Msa1464780:intron 40.0%
AACACGTTTCGATGGTAAAG+AGG - tig0044627:5500-5519 Msa1464780:intron 40.0%
! GGATGTTGCTATTAGAGTTG+TGG - tig0044627:5665-5684 Msa1464780:CDS 40.0%
! TTGCTATTAGAGTTGTGGGA+TGG - tig0044627:5670-5689 Msa1464780:CDS 40.0%
TTTGTATCGTGCCGTAATCA+GGG + tig0044627:5763-5782 None:intergenic 40.0%
ATTTGTATCGTGCCGTAATC+AGG + tig0044627:5764-5783 None:intergenic 40.0%
AACCAAAAGTGGACCTTCTT+TGG + tig0044627:5933-5952 None:intergenic 40.0%
AGTCTGCTACAAATTTAGCC+TGG - tig0044627:6080-6099 Msa1464780:intron 40.0%
AGCATAGTCACAGTACTTGT+GGG + tig0044627:6158-6177 None:intergenic 40.0%
AAGCATAGTCACAGTACTTG+TGG + tig0044627:6159-6178 None:intergenic 40.0%
ACGTCATATGTTCTGACCAT+TGG + tig0044627:4703-4722 None:intergenic 40.0%
AGGTCACACAACTTTCAAAC+AGG + tig0044627:4737-4756 None:intergenic 40.0%
TATCCAATGGTGGTTATAGC+TGG - tig0044627:4818-4837 Msa1464780:intron 40.0%
!!! AACTTGCTGTCTTTTCTGGA+TGG - tig0044627:5004-5023 Msa1464780:intron 40.0%
CATCGAACTCAAACAGATCA+TGG + tig0044627:5062-5081 None:intergenic 40.0%
TGACTTGATTGGACAGATTC+AGG + tig0044627:5147-5166 None:intergenic 40.0%
!! ACGAAGCTGATTGACTTGAT+TGG + tig0044627:5158-5177 None:intergenic 40.0%
TAATACCAGTAAGCGTGATG+TGG - tig0044627:5298-5317 Msa1464780:intron 40.0%
AAGTCGAGCAGAACATACAA+GGG + tig0044627:5441-5460 None:intergenic 40.0%
AAAGTCGAGCAGAACATACA+AGG + tig0044627:5442-5461 None:intergenic 40.0%
TAACTGTCAACACGTTTCGA+TGG - tig0044627:5492-5511 Msa1464780:intron 40.0%
AACACGTTTCGATGGTAAAG+AGG - tig0044627:5500-5519 Msa1464780:intron 40.0%
! GGATGTTGCTATTAGAGTTG+TGG - tig0044627:5665-5684 Msa1464780:CDS 40.0%
! TTGCTATTAGAGTTGTGGGA+TGG - tig0044627:5670-5689 Msa1464780:CDS 40.0%
TTTGTATCGTGCCGTAATCA+GGG + tig0044627:5763-5782 None:intergenic 40.0%
ATTTGTATCGTGCCGTAATC+AGG + tig0044627:5764-5783 None:intergenic 40.0%
AACCAAAAGTGGACCTTCTT+TGG + tig0044627:5933-5952 None:intergenic 40.0%
AGTCTGCTACAAATTTAGCC+TGG - tig0044627:6080-6099 Msa1464780:intron 40.0%
AGCATAGTCACAGTACTTGT+GGG + tig0044627:6158-6177 None:intergenic 40.0%
AAGCATAGTCACAGTACTTG+TGG + tig0044627:6159-6178 None:intergenic 40.0%
CTTTCAAACAGGCAGCATGA+CGG + tig0044627:4726-4745 None:intergenic 45.0%
GTGTGACCTTGACCTTTCAT+TGG - tig0044627:4748-4767 Msa1464780:intron 45.0%
CTTTGGCCAATGAAAGGTCA+AGG + tig0044627:4757-4776 None:intergenic 45.0%
ACACCAGCTATAACCACCAT+TGG + tig0044627:4824-4843 None:intergenic 45.0%
AATGGTGGTTATAGCTGGTG+TGG - tig0044627:4823-4842 Msa1464780:intron 45.0%
GCAGAAACTGGTATTACCAC+AGG + tig0044627:5190-5209 None:intergenic 45.0%
AGTCGAGCAGAACATACAAG+GGG + tig0044627:5440-5459 None:intergenic 45.0%
TAGAGTTGTGGGATGGATAC+TGG - tig0044627:5677-5696 Msa1464780:CDS 45.0%
AGGTAGCATACCCCTGATTA+CGG - tig0044627:5749-5768 Msa1464780:intron 45.0%
TTGTATCGTGCCGTAATCAG+GGG + tig0044627:5762-5781 None:intergenic 45.0%
! GACCAAAGAAGGTCCACTTT+TGG - tig0044627:5928-5947 Msa1464780:CDS 45.0%
ATAGTCACAGTACTTGTGGG+GGG + tig0044627:6155-6174 None:intergenic 45.0%
CATAGTCACAGTACTTGTGG+GGG + tig0044627:6156-6175 None:intergenic 45.0%
GCATAGTCACAGTACTTGTG+GGG + tig0044627:6157-6176 None:intergenic 45.0%
CTTTCAAACAGGCAGCATGA+CGG + tig0044627:4726-4745 None:intergenic 45.0%
GTGTGACCTTGACCTTTCAT+TGG - tig0044627:4748-4767 Msa1464780:intron 45.0%
CTTTGGCCAATGAAAGGTCA+AGG + tig0044627:4757-4776 None:intergenic 45.0%
ACACCAGCTATAACCACCAT+TGG + tig0044627:4824-4843 None:intergenic 45.0%
AATGGTGGTTATAGCTGGTG+TGG - tig0044627:4823-4842 Msa1464780:intron 45.0%
GCAGAAACTGGTATTACCAC+AGG + tig0044627:5190-5209 None:intergenic 45.0%
AGTCGAGCAGAACATACAAG+GGG + tig0044627:5440-5459 None:intergenic 45.0%
TAGAGTTGTGGGATGGATAC+TGG - tig0044627:5677-5696 Msa1464780:CDS 45.0%
AGGTAGCATACCCCTGATTA+CGG - tig0044627:5749-5768 Msa1464780:intron 45.0%
TTGTATCGTGCCGTAATCAG+GGG + tig0044627:5762-5781 None:intergenic 45.0%
! GACCAAAGAAGGTCCACTTT+TGG - tig0044627:5928-5947 Msa1464780:CDS 45.0%
ATAGTCACAGTACTTGTGGG+GGG + tig0044627:6155-6174 None:intergenic 45.0%
CATAGTCACAGTACTTGTGG+GGG + tig0044627:6156-6175 None:intergenic 45.0%
GCATAGTCACAGTACTTGTG+GGG + tig0044627:6157-6176 None:intergenic 45.0%
GCTTCGTCTTCTTCATCCTG+TGG - tig0044627:5171-5190 Msa1464780:intron 50.0%
TTCTGCCACATCACGCTTAC+TGG + tig0044627:5306-5325 None:intergenic 50.0%
! GCTGTTGTGCATGTTTTGCC+AGG + tig0044627:6101-6120 None:intergenic 50.0%
TAGTCACAGTACTTGTGGGG+GGG + tig0044627:6154-6173 None:intergenic 50.0%
GCTTCGTCTTCTTCATCCTG+TGG - tig0044627:5171-5190 Msa1464780:intron 50.0%
TTCTGCCACATCACGCTTAC+TGG + tig0044627:5306-5325 None:intergenic 50.0%
! GCTGTTGTGCATGTTTTGCC+AGG + tig0044627:6101-6120 None:intergenic 50.0%
TAGTCACAGTACTTGTGGGG+GGG + tig0044627:6154-6173 None:intergenic 50.0%
AGTCACAGTACTTGTGGGGG+GGG + tig0044627:6153-6172 None:intergenic 55.0%
AGTCACAGTACTTGTGGGGG+GGG + tig0044627:6153-6172 None:intergenic 55.0%
TCACAGTACTTGTGGGGGGG+GGG + tig0044627:6151-6170 None:intergenic 60.0%
GTCACAGTACTTGTGGGGGG+GGG + tig0044627:6152-6171 None:intergenic 60.0%
TCACAGTACTTGTGGGGGGG+GGG + tig0044627:6151-6170 None:intergenic 60.0%
GTCACAGTACTTGTGGGGGG+GGG + tig0044627:6152-6171 None:intergenic 60.0%
ACAGTACTTGTGGGGGGGGG+GGG + tig0044627:6149-6168 None:intergenic 65.0%
CACAGTACTTGTGGGGGGGG+GGG + tig0044627:6150-6169 None:intergenic 65.0%
ACAGTACTTGTGGGGGGGGG+GGG + tig0044627:6149-6168 None:intergenic 65.0%
CACAGTACTTGTGGGGGGGG+GGG + tig0044627:6150-6169 None:intergenic 65.0%
AGTACTTGTGGGGGGGGGGG+GGG + tig0044627:6147-6166 None:intergenic 70.0%
CAGTACTTGTGGGGGGGGGG+GGG + tig0044627:6148-6167 None:intergenic 70.0%
AGTACTTGTGGGGGGGGGGG+GGG + tig0044627:6147-6166 None:intergenic 70.0%
CAGTACTTGTGGGGGGGGGG+GGG + tig0044627:6148-6167 None:intergenic 70.0%
TACTTGTGGGGGGGGGGGGG+GGG + tig0044627:6145-6164 None:intergenic 75.0%
GTACTTGTGGGGGGGGGGGG+GGG + tig0044627:6146-6165 None:intergenic 75.0%
TACTTGTGGGGGGGGGGGGG+GGG + tig0044627:6145-6164 None:intergenic 75.0%
GTACTTGTGGGGGGGGGGGG+GGG + tig0044627:6146-6165 None:intergenic 75.0%
! ACTTGTGGGGGGGGGGGGGG+GGG + tig0044627:6144-6163 None:intergenic 80.0%
! ACTTGTGGGGGGGGGGGGGG+GGG + tig0044627:6144-6163 None:intergenic 80.0%
! TTGTGGGGGGGGGGGGGGGG+GGG + tig0044627:6142-6161 None:intergenic 85.0%
! CTTGTGGGGGGGGGGGGGGG+GGG + tig0044627:6143-6162 None:intergenic 85.0%
! TTGTGGGGGGGGGGGGGGGG+GGG + tig0044627:6142-6161 None:intergenic 85.0%
! CTTGTGGGGGGGGGGGGGGG+GGG + tig0044627:6143-6162 None:intergenic 85.0%
! TGTGGGGGGGGGGGGGGGGG+GGG + tig0044627:6141-6160 None:intergenic 90.0%
! TGTGGGGGGGGGGGGGGGGG+GGG + tig0044627:6141-6160 None:intergenic 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6139-6158 None:intergenic 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6140-6159 None:intergenic 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6139-6158 None:intergenic 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG + tig0044627:6140-6159 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
tig0044627 gene 4603 6186 4603 ID=Msa1464780;Name=Msa1464780
tig0044627 mRNA 4603 6186 4603 ID=Msa1464780-mRNA-1;Parent=Msa1464780;Name=Msa1464780-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|0|0.25|4|0|159
tig0044627 exon 6084 6186 6084 ID=Msa1464780-mRNA-1:exon:24574;Parent=Msa1464780-mRNA-1
tig0044627 exon 5916 6012 5916 ID=Msa1464780-mRNA-1:exon:24573;Parent=Msa1464780-mRNA-1
tig0044627 exon 5597 5733 5597 ID=Msa1464780-mRNA-1:exon:24572;Parent=Msa1464780-mRNA-1
tig0044627 exon 4603 4745 4603 ID=Msa1464780-mRNA-1:exon:24571;Parent=Msa1464780-mRNA-1
tig0044627 CDS 6084 6186 6084 ID=Msa1464780-mRNA-1:cds;Parent=Msa1464780-mRNA-1
tig0044627 CDS 5916 6012 5916 ID=Msa1464780-mRNA-1:cds;Parent=Msa1464780-mRNA-1
tig0044627 CDS 5597 5733 5597 ID=Msa1464780-mRNA-1:cds;Parent=Msa1464780-mRNA-1
tig0044627 CDS 4603 4745 4603 ID=Msa1464780-mRNA-1:cds;Parent=Msa1464780-mRNA-1
Gene Sequence

>Msa1464780

ATGAACTTTGAGGATTTATGTCTGAAAAAAGTGATTCCAAAAACCTATCTTTTTCAAGGGATCTTGTGTCATCTAAGTATTGGAAAGAAATGTAAGTCCAATGATTATCATCGCATACGTAGAGTTTGCGAAAGTCATTCAAAATATCCAATGGTGGTTATAGCTGGTGTGGAAAGTCGATTTTGCAAAAAATGTAGCAGTTTCCATGATCTGTTTGAGTTCGATGAAAAGAAGAGAAGCTGCAGACGACAACTTTCACGTCACAATACAAGACACCGTAAATATCATCCTGAATCTGTCCAATCAAGTCAATCAGCTTCGTCTTCTTCATCCTGTGATGGAAAGCAACAGATGAGTCCATTTGCTAATTCAAAGTCTGCTACAAATTTAGCCTGGCAAAACATGCACAACAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACAAGTACTGTGACTATGCTTTCTGTTGA

Protein sequence

>Msa1464780

MNFEDLCLKKVIPKTYLFQGILCHLSIGKKCKSNDYHRIRRVCESHSKYPMVVIAGVESRFCKKCSSFHDLFEFDEKKRSCRRQLSRHNTRHRKYHPESVQSSQSASSSSSCDGKQQMSPFANSKSATNLAWQNMHNSPPPPPPPPPPPPHKYCDYAFC*