Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465340 | XP_003616592.1 | 83.550 | 462 | 43 | 3 | 27 | 457 | 1 | 460 | 0.0 | 744 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465340 | sp|Q84WU6|ARFQ_ARATH | 41.096 | 365 | 155 | 7 | 35 | 352 | 16 | 367 | 8.44e-83 | 269 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465340 | G7KGW8 | 83.550 | 462 | 43 | 3 | 27 | 457 | 1 | 460 | 0.0 | 744 |
Gene ID | Type | Classification |
---|---|---|
Msa1465340 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465340 | MtrunA17_Chr5g0436761 | 83.550 | 462 | 43 | 3 | 27 | 457 | 1 | 460 | 0.0 | 744 |
Msa1465340 | MtrunA17_Chr5g0417211 | 57.991 | 438 | 141 | 8 | 27 | 457 | 1 | 402 | 2.47e-162 | 464 |
Msa1465340 | MtrunA17_Chr5g0417281 | 49.219 | 512 | 165 | 10 | 34 | 457 | 7 | 511 | 4.17e-150 | 437 |
Msa1465340 | MtrunA17_Chr5g0424931 | 47.126 | 522 | 169 | 11 | 32 | 457 | 13 | 523 | 3.61e-139 | 409 |
Msa1465340 | MtrunA17_Chr2g0289221 | 62.187 | 320 | 114 | 4 | 25 | 342 | 7 | 321 | 8.64e-137 | 397 |
Msa1465340 | MtrunA17_Chr1g0178011 | 47.321 | 448 | 197 | 13 | 27 | 447 | 1 | 436 | 3.44e-119 | 356 |
Msa1465340 | MtrunA17_Chr2g0277461 | 42.291 | 454 | 222 | 14 | 30 | 455 | 5 | 446 | 1.02e-96 | 298 |
Msa1465340 | MtrunA17_Chr5g0425261 | 47.761 | 335 | 148 | 7 | 32 | 353 | 6 | 326 | 2.31e-90 | 279 |
Msa1465340 | MtrunA17_Chr5g0424801 | 47.463 | 335 | 149 | 8 | 32 | 353 | 6 | 326 | 7.00e-90 | 278 |
Msa1465340 | MtrunA17_Chr5g0424741 | 43.883 | 376 | 159 | 10 | 31 | 363 | 5 | 371 | 3.09e-87 | 276 |
Msa1465340 | MtrunA17_Chr3g0115271 | 38.362 | 464 | 197 | 11 | 26 | 410 | 7 | 460 | 5.65e-84 | 269 |
Msa1465340 | MtrunA17_Chr2g0326761 | 38.992 | 377 | 152 | 10 | 35 | 352 | 8 | 365 | 3.78e-76 | 251 |
Msa1465340 | MtrunA17_Chr2g0277531 | 43.125 | 320 | 158 | 11 | 32 | 342 | 14 | 318 | 3.40e-73 | 233 |
Msa1465340 | MtrunA17_Chr1g0181211 | 37.931 | 377 | 164 | 9 | 35 | 352 | 24 | 389 | 8.47e-72 | 239 |
Msa1465340 | MtrunA17_Chr4g0028971 | 36.496 | 411 | 188 | 10 | 27 | 378 | 1 | 397 | 9.17e-72 | 239 |
Msa1465340 | MtrunA17_Chr1g0199681 | 38.606 | 373 | 158 | 10 | 35 | 352 | 91 | 447 | 3.24e-70 | 235 |
Msa1465340 | MtrunA17_Chr7g0264161 | 40.895 | 313 | 154 | 9 | 48 | 342 | 2 | 301 | 1.84e-66 | 215 |
Msa1465340 | MtrunA17_Chr7g0264171 | 36.228 | 403 | 182 | 12 | 35 | 373 | 28 | 419 | 3.52e-66 | 223 |
Msa1465340 | MtrunA17_Chr5g0425661 | 46.637 | 223 | 112 | 4 | 10 | 228 | 8 | 227 | 5.80e-57 | 188 |
Msa1465340 | MtrunA17_Chr2g0301251 | 34.302 | 344 | 192 | 9 | 35 | 357 | 20 | 350 | 4.07e-55 | 197 |
Msa1465340 | MtrunA17_Chr4g0070181 | 35.277 | 343 | 190 | 9 | 35 | 357 | 20 | 350 | 2.59e-54 | 195 |
Msa1465340 | MtrunA17_Chr2g0285461 | 34.540 | 359 | 196 | 12 | 17 | 351 | 3 | 346 | 3.92e-54 | 194 |
Msa1465340 | MtrunA17_Chr5g0433301 | 34.493 | 345 | 180 | 12 | 35 | 351 | 21 | 347 | 2.47e-53 | 191 |
Msa1465340 | MtrunA17_Chr3g0109391 | 33.718 | 347 | 180 | 11 | 35 | 351 | 23 | 349 | 4.92e-52 | 188 |
Msa1465340 | MtrunA17_Chr1g0156321 | 34.242 | 330 | 190 | 9 | 35 | 346 | 40 | 360 | 4.85e-51 | 185 |
Msa1465340 | MtrunA17_Chr2g0282961 | 32.507 | 363 | 197 | 12 | 18 | 352 | 35 | 377 | 2.11e-50 | 181 |
Msa1465340 | MtrunA17_Chr4g0009751 | 32.047 | 337 | 205 | 6 | 36 | 357 | 17 | 344 | 2.41e-50 | 180 |
Msa1465340 | MtrunA17_Chr8g0376771 | 33.889 | 360 | 196 | 13 | 17 | 351 | 3 | 345 | 3.56e-50 | 183 |
Msa1465340 | MtrunA17_Chr8g0389081 | 32.362 | 343 | 202 | 7 | 35 | 357 | 29 | 361 | 2.11e-48 | 178 |
Msa1465340 | MtrunA17_Chr7g0239061 | 31.988 | 347 | 212 | 7 | 38 | 369 | 14 | 351 | 5.89e-48 | 175 |
Msa1465340 | MtrunA17_Chr4g0046371 | 30.151 | 398 | 221 | 13 | 38 | 391 | 38 | 422 | 1.48e-46 | 171 |
Msa1465340 | MtrunA17_Chr8g0346711 | 32.641 | 337 | 200 | 9 | 38 | 358 | 29 | 354 | 7.82e-46 | 169 |
Msa1465340 | MtrunA17_Chr8g0385791 | 32.722 | 327 | 196 | 8 | 37 | 347 | 58 | 376 | 9.47e-46 | 170 |
Msa1465340 | MtrunA17_Chr2g0326281 | 32.951 | 349 | 185 | 12 | 38 | 346 | 56 | 395 | 4.20e-44 | 165 |
Msa1465340 | MtrunA17_Chr4g0029671 | 33.240 | 358 | 205 | 9 | 38 | 369 | 54 | 403 | 4.74e-43 | 162 |
Msa1465340 | MtrunA17_Chr2g0276781 | 31.902 | 326 | 197 | 7 | 37 | 346 | 22 | 338 | 2.99e-42 | 159 |
Msa1465340 | MtrunA17_Chr5g0425651 | 47.967 | 123 | 52 | 5 | 259 | 370 | 1 | 122 | 8.76e-25 | 99.0 |
Msa1465340 | MtrunA17_Chr5g0424791 | 39.865 | 148 | 77 | 4 | 86 | 231 | 11 | 148 | 3.33e-23 | 95.5 |
Msa1465340 | MtrunA17_Chr8g0356211 | 27.273 | 209 | 129 | 6 | 151 | 345 | 7 | 206 | 1.12e-17 | 83.6 |
Msa1465340 | MtrunA17_Chr5g0419861 | 38.017 | 121 | 64 | 4 | 70 | 184 | 6 | 121 | 1.17e-13 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465340 | AT1G77850.2 | 41.096 | 365 | 155 | 7 | 35 | 352 | 16 | 367 | 7.62e-84 | 270 |
Msa1465340 | AT1G77850.1 | 41.096 | 365 | 155 | 7 | 35 | 352 | 16 | 367 | 8.58e-84 | 269 |
Msa1465340 | AT4G30080.1 | 38.303 | 389 | 162 | 9 | 23 | 352 | 4 | 373 | 2.45e-74 | 246 |
Msa1465340 | AT2G28350.2 | 37.931 | 377 | 163 | 9 | 35 | 352 | 7 | 371 | 7.34e-68 | 229 |
Msa1465340 | AT2G28350.1 | 37.931 | 377 | 163 | 9 | 35 | 352 | 7 | 371 | 7.89e-68 | 229 |
Msa1465340 | AT5G37020.2 | 34.985 | 343 | 181 | 12 | 35 | 351 | 19 | 345 | 2.00e-55 | 197 |
Msa1465340 | AT5G37020.1 | 34.985 | 343 | 181 | 12 | 35 | 351 | 19 | 345 | 3.27e-55 | 197 |
Msa1465340 | AT1G30330.1 | 34.160 | 363 | 192 | 11 | 17 | 351 | 3 | 346 | 2.11e-53 | 192 |
Msa1465340 | AT1G30330.3 | 34.341 | 364 | 192 | 11 | 17 | 351 | 3 | 348 | 2.72e-53 | 192 |
Msa1465340 | AT1G30330.2 | 34.341 | 364 | 192 | 11 | 17 | 351 | 3 | 348 | 2.72e-53 | 192 |
Msa1465340 | AT1G19220.1 | 33.889 | 360 | 203 | 11 | 19 | 357 | 5 | 350 | 2.19e-51 | 187 |
Msa1465340 | AT5G20730.3 | 33.152 | 368 | 210 | 10 | 18 | 364 | 5 | 357 | 2.25e-51 | 187 |
Msa1465340 | AT5G20730.1 | 33.152 | 368 | 210 | 10 | 18 | 364 | 5 | 357 | 2.52e-51 | 187 |
Msa1465340 | AT5G20730.2 | 33.424 | 368 | 208 | 11 | 18 | 364 | 5 | 356 | 4.08e-51 | 186 |
Msa1465340 | AT2G33860.1 | 34.535 | 333 | 180 | 10 | 38 | 346 | 54 | 372 | 2.33e-50 | 181 |
Msa1465340 | AT1G19850.1 | 34.085 | 355 | 205 | 10 | 30 | 366 | 47 | 390 | 2.77e-49 | 181 |
Msa1465340 | AT1G19850.2 | 34.085 | 355 | 205 | 10 | 30 | 366 | 36 | 379 | 2.95e-49 | 181 |
Msa1465340 | AT4G23980.1 | 32.249 | 338 | 199 | 9 | 38 | 357 | 12 | 337 | 2.73e-48 | 175 |
Msa1465340 | AT4G23980.2 | 32.249 | 338 | 199 | 9 | 38 | 357 | 12 | 337 | 2.74e-48 | 175 |
Msa1465340 | AT5G62000.2 | 32.938 | 337 | 200 | 9 | 27 | 347 | 52 | 378 | 1.36e-46 | 172 |
Msa1465340 | AT5G62000.5 | 32.938 | 337 | 200 | 9 | 27 | 347 | 52 | 378 | 1.36e-46 | 172 |
Msa1465340 | AT5G62000.3 | 32.938 | 337 | 200 | 9 | 27 | 347 | 52 | 378 | 1.36e-46 | 172 |
Msa1465340 | AT5G62000.1 | 32.938 | 337 | 200 | 9 | 27 | 347 | 52 | 378 | 1.36e-46 | 172 |
Msa1465340 | AT5G62000.4 | 32.938 | 337 | 200 | 9 | 27 | 347 | 52 | 378 | 1.68e-46 | 172 |
Msa1465340 | AT2G46530.1 | 31.765 | 340 | 197 | 10 | 38 | 357 | 21 | 345 | 2.30e-46 | 169 |
Msa1465340 | AT2G46530.3 | 31.765 | 340 | 197 | 10 | 38 | 357 | 42 | 366 | 3.76e-46 | 169 |
Msa1465340 | AT5G60450.2 | 34.066 | 364 | 196 | 13 | 33 | 362 | 28 | 381 | 5.18e-46 | 171 |
Msa1465340 | AT3G61830.1 | 32.059 | 340 | 196 | 10 | 38 | 357 | 25 | 349 | 5.98e-46 | 168 |
Msa1465340 | AT5G60450.1 | 34.473 | 351 | 194 | 12 | 38 | 362 | 65 | 405 | 1.34e-45 | 169 |
Msa1465340 | AT1G59750.2 | 31.288 | 326 | 199 | 7 | 37 | 346 | 21 | 337 | 1.33e-42 | 160 |
Msa1465340 | AT1G59750.1 | 31.288 | 326 | 199 | 7 | 37 | 346 | 21 | 337 | 1.36e-42 | 160 |
Msa1465340 | AT1G59750.3 | 31.288 | 326 | 199 | 7 | 37 | 346 | 21 | 337 | 1.36e-42 | 160 |
Msa1465340 | AT1G59750.4 | 31.288 | 326 | 199 | 7 | 37 | 346 | 21 | 337 | 1.45e-42 | 160 |
Msa1465340 | AT1G35520.1 | 33.231 | 325 | 186 | 9 | 38 | 346 | 27 | 336 | 3.23e-42 | 158 |
Msa1465340 | AT1G34410.1 | 32.615 | 325 | 188 | 9 | 38 | 346 | 27 | 336 | 2.57e-41 | 155 |
Msa1465340 | AT1G34310.1 | 31.714 | 350 | 208 | 8 | 35 | 368 | 24 | 358 | 5.34e-41 | 154 |
Msa1465340 | AT1G35540.1 | 30.746 | 335 | 203 | 7 | 38 | 357 | 27 | 347 | 5.65e-41 | 154 |
Msa1465340 | AT1G35240.1 | 32.923 | 325 | 187 | 9 | 38 | 346 | 27 | 336 | 7.46e-41 | 154 |
Msa1465340 | AT1G34170.1 | 31.700 | 347 | 196 | 11 | 33 | 357 | 20 | 347 | 1.01e-39 | 149 |
Msa1465340 | AT1G34390.1 | 31.692 | 325 | 189 | 9 | 38 | 346 | 27 | 334 | 9.20e-39 | 148 |
Msa1465340 | AT5G37020.3 | 36.404 | 228 | 119 | 8 | 140 | 351 | 33 | 250 | 1.05e-38 | 149 |
Msa1465340 | AT2G33860.2 | 36.199 | 221 | 118 | 7 | 140 | 346 | 4 | 215 | 6.21e-37 | 141 |
Msa1465340 | AT3G61830.2 | 32.056 | 287 | 165 | 8 | 87 | 357 | 26 | 298 | 4.80e-35 | 137 |
Msa1465340 | AT1G34170.2 | 31.176 | 340 | 181 | 11 | 33 | 357 | 20 | 321 | 1.08e-33 | 132 |
Msa1465340 | AT1G34170.3 | 31.176 | 340 | 181 | 11 | 33 | 357 | 20 | 321 | 2.60e-33 | 132 |
Msa1465340 | AT2G46530.2 | 32.035 | 231 | 133 | 6 | 140 | 357 | 39 | 258 | 2.66e-31 | 126 |
Msa1465340 | AT1G43950.1 | 34.123 | 211 | 119 | 7 | 38 | 243 | 27 | 222 | 2.09e-24 | 101 |
Msa1465340 | ATMG00940.1 | 35.915 | 142 | 79 | 6 | 199 | 338 | 13 | 144 | 2.09e-15 | 74.3 |
Find 104 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATGGTTCTATTAAGCTATT+TGG | 0.141873 | tig0045174:+4115 | Msa1465340:CDS |
TCTTAATATCATAGGTTAAC+TGG | 0.217841 | tig0045174:+3757 | Msa1465340:intron |
GTTGACACAAAGAAAATTAT+TGG | 0.252106 | tig0045174:+2238 | Msa1465340:CDS |
AGGGAGAGTGTCTCGGTGTT+AGG | 0.314359 | tig0045174:-1821 | Msa1465340:intergenic |
AGAAAGCAATGCAAATTAAT+TGG | 0.320693 | tig0045174:+2485 | Msa1465340:CDS |
GAAGTACCTGAGACGGCATT+TGG | 0.330889 | tig0045174:-2120 | Msa1465340:intergenic |
TCATCCATGGCGCATGCTTC+AGG | 0.334788 | tig0045174:+2609 | Msa1465340:CDS |
CGTTATGGAGGCAGCAGAAT+TGG | 0.366432 | tig0045174:+2378 | Msa1465340:CDS |
AAAACTTGAGAATTTAGTTT+CGG | 0.371328 | tig0045174:-1758 | Msa1465340:intergenic |
ATGCAAATTAATTGGCAATC+TGG | 0.372298 | tig0045174:+2493 | Msa1465340:CDS |
GAGCGCCAGAAAATATGATT+AGG | 0.373290 | tig0045174:-1617 | Msa1465340:intergenic |
GGCAGCAGAATTGGCGGATA+AGG | 0.384504 | tig0045174:+2387 | Msa1465340:CDS |
TACTCCAGTTAGTGGTGATT+AGG | 0.404311 | tig0045174:-2210 | Msa1465340:intergenic |
GACCATAGAGGTTGTTGAAA+AGG | 0.408752 | tig0045174:+4141 | Msa1465340:CDS |
GGGAGAGTGTCTCGGTGTTA+GGG | 0.417483 | tig0045174:-1820 | Msa1465340:intergenic |
AGCGCCAGAAAATATGATTA+GGG | 0.422758 | tig0045174:-1616 | Msa1465340:intergenic |
AAGAAATTGAACTCTATCTC+TGG | 0.424200 | tig0045174:-3938 | Msa1465340:intergenic |
GACACCTAATCACCACTAAC+TGG | 0.430030 | tig0045174:+2206 | Msa1465340:CDS |
GTCATTATCATTCAAAGAGT+TGG | 0.431834 | tig0045174:-4044 | Msa1465340:intergenic |
ATTATCCGACGGCTAGTCAT+TGG | 0.433407 | tig0045174:+2431 | Msa1465340:CDS |
TGCCAAGGACTTACTTGACT+TGG | 0.438785 | tig0045174:-3804 | Msa1465340:intergenic |
GTGGGTTTCTGAGGATCCAT+GGG | 0.447035 | tig0045174:-1683 | Msa1465340:intergenic |
GAGACGGCATTTGGGATTGT+AGG | 0.450973 | tig0045174:-2111 | Msa1465340:intergenic |
GGTGGGTTTCTGAGGATCCA+TGG | 0.451620 | tig0045174:-1684 | Msa1465340:intergenic |
TCTCTCTATGTCAGTTGATA+AGG | 0.451807 | tig0045174:-3906 | Msa1465340:intergenic |
AAAATCTGGCAGTGCTTGGC+CGG | 0.457026 | tig0045174:+1719 | Msa1465340:CDS |
AGTGGTGATTAGGTGTCGCT+TGG | 0.461123 | tig0045174:-2200 | Msa1465340:intergenic |
AACGAACTTACTCCAGTTAG+TGG | 0.466764 | tig0045174:-2218 | Msa1465340:intergenic |
AATGCCGTCTCAGGTACTTC+CGG | 0.466944 | tig0045174:+2123 | Msa1465340:CDS |
GCAGTGCTTGGCCGGACCAT+CGG | 0.467814 | tig0045174:+1727 | Msa1465340:CDS |
GAAGACGAACAAGGTGGTGA+TGG | 0.472136 | tig0045174:+1986 | Msa1465340:CDS |
TGGAACGGTAACCATTGATA+AGG | 0.480056 | tig0045174:-1841 | Msa1465340:intergenic |
TTACTTTCCACTAGGTCACT+TGG | 0.487944 | tig0045174:+1781 | Msa1465340:CDS |
AAGTACCTGAGACGGCATTT+GGG | 0.489716 | tig0045174:-2119 | Msa1465340:intergenic |
TTGCATGAGTCTCGTATCAA+TGG | 0.490704 | tig0045174:+4166 | Msa1465340:CDS |
ACAATCCCAAATGCCGTCTC+AGG | 0.502462 | tig0045174:+2114 | Msa1465340:CDS |
GGAGACGACGCAGGGAATGA+TGG | 0.504133 | tig0045174:-1861 | Msa1465340:intergenic |
CAAAGAGTTGGAAGAAGTTG+AGG | 0.511344 | tig0045174:-4032 | Msa1465340:intergenic |
ATCAATTTCGCGCATTCAGA+AGG | 0.518250 | tig0045174:-2073 | Msa1465340:intergenic |
GATAAAGATGAGATCTTCAT+CGG | 0.522227 | tig0045174:+2307 | Msa1465340:CDS |
CTTAATATCATAGGTTAACT+GGG | 0.524753 | tig0045174:+3758 | Msa1465340:intron |
CATCATAATTCAACGACGAT+GGG | 0.525431 | tig0045174:-3964 | Msa1465340:intergenic |
AACTTTCGCCACACCTACCG+TGG | 0.527055 | tig0045174:+2172 | Msa1465340:CDS |
GTCTCAGGTACTTCCGGTCA+AGG | 0.528972 | tig0045174:+2129 | Msa1465340:CDS |
AACTCTATCTCTGGAATGGA+GGG | 0.529089 | tig0045174:-3929 | Msa1465340:intergenic |
GTGGTGATTAGGTGTCGCTT+GGG | 0.529316 | tig0045174:-2199 | Msa1465340:intergenic |
TTCGTGAAAACCATTGGTGA+TGG | 0.529499 | tig0045174:-1945 | Msa1465340:intergenic |
AGTGTCTCGGTGTTAGGGGA+AGG | 0.530063 | tig0045174:-1815 | Msa1465340:intergenic |
GGAACGGTAACCATTGATAA+GGG | 0.531635 | tig0045174:-1840 | Msa1465340:intergenic |
ATTGAACTCTATCTCTGGAA+TGG | 0.532356 | tig0045174:-3933 | Msa1465340:intergenic |
CACCGTTATTAGCATCAGAC+GGG | 0.539853 | tig0045174:-2036 | Msa1465340:intergenic |
TGGGTTTCTGAGGATCCATG+GGG | 0.544883 | tig0045174:-1682 | Msa1465340:intergenic |
AGGAGCTTCGTGAAAACCAT+TGG | 0.550219 | tig0045174:-1951 | Msa1465340:intergenic |
GCTATTTGGTAAGACCATAG+AGG | 0.550878 | tig0045174:+4129 | Msa1465340:CDS |
TATCAATGGAGAGGATGGTT+CGG | 0.552538 | tig0045174:+4180 | Msa1465340:CDS |
CTGATCCTTCTCATCATCCA+TGG | 0.552744 | tig0045174:+2596 | Msa1465340:CDS |
ATCAACGTGGGAGACGACGC+AGG | 0.552853 | tig0045174:-1870 | Msa1465340:intergenic |
CAATTCTGCTGCCTCCATAA+CGG | 0.556885 | tig0045174:-2377 | Msa1465340:intergenic |
AAGTGCTGCTGCTAAGATAA+CGG | 0.557189 | tig0045174:+2348 | Msa1465340:CDS |
TATGGAGGCAGCAGAATTGG+CGG | 0.563383 | tig0045174:+2381 | Msa1465340:CDS |
AAGACGAACAAGGTGGTGAT+GGG | 0.566040 | tig0045174:+1987 | Msa1465340:CDS |
GAACTCTATCTCTGGAATGG+AGG | 0.568555 | tig0045174:-3930 | Msa1465340:intergenic |
TGAAGTTATTTATTATCCGA+CGG | 0.573203 | tig0045174:+2420 | Msa1465340:CDS |
ACCCCGTCTGATGCTAATAA+CGG | 0.573286 | tig0045174:+2034 | Msa1465340:CDS |
TCGTGAAAACCATTGGTGAT+GGG | 0.574083 | tig0045174:-1944 | Msa1465340:intergenic |
GCATCATAATTCAACGACGA+TGG | 0.574168 | tig0045174:-3965 | Msa1465340:intergenic |
AAATTGTGGATGTCCTTGAC+CGG | 0.574466 | tig0045174:-2142 | Msa1465340:intergenic |
GAGACACTCTCCCTTATCAA+TGG | 0.574718 | tig0045174:+1830 | Msa1465340:CDS |
CTTCTAACTCCCATCACCAA+TGG | 0.575065 | tig0045174:+1935 | Msa1465340:CDS |
GGGTTTCTGAGGATCCATGG+GGG | 0.578685 | tig0045174:-1681 | Msa1465340:intergenic |
TCAACACGGGTGGGTTTCTG+AGG | 0.579497 | tig0045174:-1692 | Msa1465340:intergenic |
GGGATTGTAGGTCAAGTGGC+GGG | 0.582541 | tig0045174:-2099 | Msa1465340:intergenic |
TCTCGTATCAATGGAGAGGA+TGG | 0.584544 | tig0045174:+4175 | Msa1465340:CDS |
ATTTGGGATTGTAGGTCAAG+TGG | 0.584928 | tig0045174:-2103 | Msa1465340:intergenic |
AGATCTTCATCGGAATCCGC+AGG | 0.586965 | tig0045174:+2317 | Msa1465340:CDS |
GACACAAAGAAAATTATTGG+CGG | 0.588137 | tig0045174:+2241 | Msa1465340:CDS |
GTGTCTCGGTGTTAGGGGAA+GGG | 0.590737 | tig0045174:-1814 | Msa1465340:intergenic |
TGGGAGACCCACGGTAGGTG+TGG | 0.592829 | tig0045174:-2180 | Msa1465340:intergenic |
TTTCGCGCATTCAGAAGGTA+CGG | 0.595810 | tig0045174:-2068 | Msa1465340:intergenic |
TCGTCTTCATGAACCTCCTG+AGG | 0.595929 | tig0045174:-1971 | Msa1465340:intergenic |
ATGCGCCATGGATGATGAGA+AGG | 0.597068 | tig0045174:-2601 | Msa1465340:intergenic |
GCATGTTCCAAGTGACCTAG+TGG | 0.597744 | tig0045174:-1788 | Msa1465340:intergenic |
TCTTTGAATGATAATGACAA+TGG | 0.598013 | tig0045174:+4049 | Msa1465340:CDS |
CCACCGTTATTAGCATCAGA+CGG | 0.605856 | tig0045174:-2037 | Msa1465340:intergenic |
CAGCACTTAACTTGTGCCTG+CGG | 0.605893 | tig0045174:-2333 | Msa1465340:intergenic |
CATACCTGAAGCATGCGCCA+TGG | 0.607260 | tig0045174:-2613 | Msa1465340:intergenic |
ATTGATAAGGGAGAGTGTCT+CGG | 0.607906 | tig0045174:-1828 | Msa1465340:intergenic |
TGGGATTGTAGGTCAAGTGG+CGG | 0.613260 | tig0045174:-2100 | Msa1465340:intergenic |
GAAAGTTCCAAACAAAATTG+TGG | 0.613552 | tig0045174:-2156 | Msa1465340:intergenic |
GGAGAGTGTCTCGGTGTTAG+GGG | 0.624404 | tig0045174:-1819 | Msa1465340:intergenic |
ACTTTCGCCACACCTACCGT+GGG | 0.642314 | tig0045174:+2173 | Msa1465340:CDS |
CGACGCAGGGAATGATGGAA+CGG | 0.650557 | tig0045174:-1856 | Msa1465340:intergenic |
GAGGTTCATGAAGACGAACA+AGG | 0.654030 | tig0045174:+1977 | Msa1465340:CDS |
TGAGTCTCGTATCAATGGAG+AGG | 0.655210 | tig0045174:+4171 | Msa1465340:CDS |
TCGCTTGGGAGACCCACGGT+AGG | 0.655585 | tig0045174:-2185 | Msa1465340:intergenic |
ATCAGCTAAGAGATCAACGT+GGG | 0.664891 | tig0045174:-1882 | Msa1465340:intergenic |
TCAACGTGGGAGACGACGCA+GGG | 0.667679 | tig0045174:-1869 | Msa1465340:intergenic |
TTGACCGGAAGTACCTGAGA+CGG | 0.673143 | tig0045174:-2127 | Msa1465340:intergenic |
TTACACCAATGACTAGCCGT+CGG | 0.681240 | tig0045174:-2436 | Msa1465340:intergenic |
GGTGTCGCTTGGGAGACCCA+CGG | 0.696022 | tig0045174:-2189 | Msa1465340:intergenic |
CCGTCTGATGCTAATAACGG+TGG | 0.711537 | tig0045174:+2037 | Msa1465340:CDS |
ACCGTTATTAGCATCAGACG+GGG | 0.747888 | tig0045174:-2035 | Msa1465340:intergenic |
GTTCATGAAGACGAACAAGG+TGG | 0.759394 | tig0045174:+1980 | Msa1465340:CDS |
GATCAGCTAAGAGATCAACG+TGG | 0.824076 | tig0045174:-1883 | Msa1465330:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTTGTAAAATTATGACT+AGG | + | tig0045174:2818-2837 | Msa1465340:intron | 15.0% |
!! | TATTTGTAAAATTATGACTA+GGG | + | tig0045174:2819-2838 | Msa1465340:intron | 15.0% |
!! | AATTAATTTATGTGCATAAT+AGG | + | tig0045174:3510-3529 | Msa1465340:intron | 15.0% |
!!! | AAAACTTGAGAATTTAGTTT+CGG | - | tig0045174:1761-1780 | Msa1465340:intergenic | 20.0% |
!!! | AGAATTTTTCATTAAAACGA+GGG | - | tig0045174:2272-2291 | Msa1465340:intergenic | 20.0% |
!!! | TAGAATTTTTCATTAAAACG+AGG | - | tig0045174:2273-2292 | Msa1465340:intergenic | 20.0% |
!! | TTCATCTGTAATAACATTTA+TGG | - | tig0045174:2705-2724 | Msa1465340:intergenic | 20.0% |
!! | TACAAATAATGTTATCACAT+TGG | - | tig0045174:2807-2826 | Msa1465340:intergenic | 20.0% |
!!! | CTCTAAAAAATTGTTTAGAT+GGG | - | tig0045174:2943-2962 | Msa1465340:intergenic | 20.0% |
!!! | ATCGTTCATTTCTAATTTTT+TGG | - | tig0045174:3037-3056 | Msa1465340:intergenic | 20.0% |
!! | GATAATAGGTGTAAATTAAA+GGG | - | tig0045174:3123-3142 | Msa1465340:intergenic | 20.0% |
!! | AGATAATAGGTGTAAATTAA+AGG | - | tig0045174:3124-3143 | Msa1465340:intergenic | 20.0% |
!! | TAAATATAAGAATGTTGTAG+TGG | - | tig0045174:3652-3671 | Msa1465340:intergenic | 20.0% |
!! | TATGATATTAAGATGAAAAG+TGG | - | tig0045174:3750-3769 | Msa1465340:intergenic | 20.0% |
!!! | ACTTTTCATCTTAATATCAT+AGG | + | tig0045174:3749-3768 | Msa1465340:intron | 20.0% |
!! | AAAACCCTAATCATATTTTC+TGG | + | tig0045174:1612-1631 | Msa1465340:CDS | 25.0% |
! | GTTGACACAAAGAAAATTAT+TGG | + | tig0045174:2238-2257 | Msa1465340:CDS | 25.0% |
! | TGAAGTTATTTATTATCCGA+CGG | + | tig0045174:2420-2439 | Msa1465340:CDS | 25.0% |
! | AGAAAGCAATGCAAATTAAT+TGG | + | tig0045174:2485-2504 | Msa1465340:CDS | 25.0% |
!! | CCTCTAAAAAATTGTTTAGA+TGG | - | tig0045174:2944-2963 | Msa1465340:intergenic | 25.0% |
!!! | CCATCTAAACAATTTTTTAG+AGG | + | tig0045174:2941-2960 | Msa1465340:intron | 25.0% |
! | AACTATAAAGTTGTACACAT+TGG | + | tig0045174:3207-3226 | Msa1465340:intron | 25.0% |
!! | GTGATTTATACTCCAATTTT+AGG | - | tig0045174:3461-3480 | Msa1465340:intergenic | 25.0% |
! | TATTAAGATGAAAAGTGGTA+AGG | - | tig0045174:3745-3764 | Msa1465340:intergenic | 25.0% |
! | TCTTAATATCATAGGTTAAC+TGG | + | tig0045174:3757-3776 | Msa1465340:intron | 25.0% |
! | CTTAATATCATAGGTTAACT+GGG | + | tig0045174:3758-3777 | Msa1465340:intron | 25.0% |
!!! | AATTCTAAGCTTTTTTTGTG+GGG | - | tig0045174:3873-3892 | Msa1465340:intergenic | 25.0% |
!!! | CAATTCTAAGCTTTTTTTGT+GGG | - | tig0045174:3874-3893 | Msa1465340:intergenic | 25.0% |
!! | TCTTTGAATGATAATGACAA+TGG | + | tig0045174:4049-4068 | Msa1465340:CDS | 25.0% |
! | AACACCAAAAAAGTTAATCA+TGG | + | tig0045174:4097-4116 | Msa1465340:CDS | 25.0% |
!!! | AGAACCATGATTAACTTTTT+TGG | - | tig0045174:4104-4123 | Msa1465340:intergenic | 25.0% |
!!! | CAAGTTTTTTACTTTCCACT+AGG | + | tig0045174:1773-1792 | Msa1465340:CDS | 30.0% |
GAAAGTTCCAAACAAAATTG+TGG | - | tig0045174:2159-2178 | Msa1465340:intergenic | 30.0% | |
GACACAAAGAAAATTATTGG+CGG | + | tig0045174:2241-2260 | Msa1465340:CDS | 30.0% | |
GATAAAGATGAGATCTTCAT+CGG | + | tig0045174:2307-2326 | Msa1465340:CDS | 30.0% | |
! | TAGTCATTGGTGTAATTTTG+TGG | + | tig0045174:2444-2463 | Msa1465340:CDS | 30.0% |
ATGCAAATTAATTGGCAATC+TGG | + | tig0045174:2493-2512 | Msa1465340:CDS | 30.0% | |
! | AAGAGAAGCTCAATTTTTCA+AGG | + | tig0045174:2556-2575 | Msa1465340:CDS | 30.0% |
!! | AGAGAAGCTCAATTTTTCAA+GGG | + | tig0045174:2557-2576 | Msa1465340:CDS | 30.0% |
!! | TCAGGTATGATTTCTTGTTT+TGG | + | tig0045174:2627-2646 | Msa1465340:intron | 30.0% |
TGTATACATAAGACTAGAGT+CGG | + | tig0045174:3058-3077 | Msa1465340:intron | 30.0% | |
TGGAAGAAACACAAGATAAT+AGG | - | tig0045174:3137-3156 | Msa1465340:intergenic | 30.0% | |
TATATTTAAGGGGTTCAAGA+TGG | - | tig0045174:3157-3176 | Msa1465340:intergenic | 30.0% | |
ATCTTGAACCCCTTAAATAT+AGG | + | tig0045174:3156-3175 | Msa1465340:intron | 30.0% | |
TCTTGAACCCCTTAAATATA+GGG | + | tig0045174:3157-3176 | Msa1465340:intron | 30.0% | |
! | ACCTTTTCTATTGACATCAA+AGG | + | tig0045174:3286-3305 | Msa1465340:intron | 30.0% |
ACCTTTGATGTCAATAGAAA+AGG | - | tig0045174:3290-3309 | Msa1465340:intergenic | 30.0% | |
TTGCTTGCTTATATGTACTA+AGG | + | tig0045174:3333-3352 | Msa1465340:intron | 30.0% | |
AAGATAATTTCACACCTACA+TGG | + | tig0045174:3432-3451 | Msa1465340:intron | 30.0% | |
!!! | ATTCTAAGCTTTTTTTGTGG+GGG | - | tig0045174:3872-3891 | Msa1465340:intergenic | 30.0% |
!!! | GCAATTCTAAGCTTTTTTTG+TGG | - | tig0045174:3875-3894 | Msa1465340:intergenic | 30.0% |
AAAAAAGCTTAGAATTGCTC+AGG | + | tig0045174:3877-3896 | Msa1465340:intron | 30.0% | |
AAAAAGCTTAGAATTGCTCA+GGG | + | tig0045174:3878-3897 | Msa1465340:intron | 30.0% | |
AAGAAATTGAACTCTATCTC+TGG | - | tig0045174:3941-3960 | Msa1465340:intergenic | 30.0% | |
GTCATTATCATTCAAAGAGT+TGG | - | tig0045174:4047-4066 | Msa1465340:intergenic | 30.0% | |
!!! | AATGACAATGGTTTTGTTGA+AGG | + | tig0045174:4061-4080 | Msa1465340:CDS | 30.0% |
!!! | GATTAACTTTTTTGGTGTTG+AGG | - | tig0045174:4096-4115 | Msa1465340:intergenic | 30.0% |
! | CATGGTTCTATTAAGCTATT+TGG | + | tig0045174:4115-4134 | Msa1465340:CDS | 30.0% |
AGCGCCAGAAAATATGATTA+GGG | - | tig0045174:1619-1638 | Msa1465340:intergenic | 35.0% | |
! | CAGTTTTGCAAAGACTTCAT+CGG | - | tig0045174:1915-1934 | Msa1465340:intergenic | 35.0% |
! | AGGACATCCACAATTTTGTT+TGG | + | tig0045174:2149-2168 | Msa1465340:CDS | 35.0% |
!! | GATAACGGAAAAATCCGTTA+TGG | + | tig0045174:2363-2382 | Msa1465340:CDS | 35.0% |
! | TCATTGGTGTAATTTTGTGG+TGG | + | tig0045174:2447-2466 | Msa1465340:CDS | 35.0% |
TTCCATAATTAGACGATGCA+TGG | + | tig0045174:2739-2758 | Msa1465340:intron | 35.0% | |
AACCATGCATCGTCTAATTA+TGG | - | tig0045174:2744-2763 | Msa1465340:intergenic | 35.0% | |
! | AGTAGCTTTGCAACTAGTAT+AGG | + | tig0045174:2774-2793 | Msa1465340:intron | 35.0% |
! | TCGGAATCGACTTATATCTA+AGG | + | tig0045174:3077-3096 | Msa1465340:intron | 35.0% |
! | CGGAATCGACTTATATCTAA+GGG | + | tig0045174:3078-3097 | Msa1465340:intron | 35.0% |
GTACAAGCCCTATATTTAAG+GGG | - | tig0045174:3167-3186 | Msa1465340:intergenic | 35.0% | |
GGTACAAGCCCTATATTTAA+GGG | - | tig0045174:3168-3187 | Msa1465340:intergenic | 35.0% | |
TGGTACAAGCCCTATATTTA+AGG | - | tig0045174:3169-3188 | Msa1465340:intergenic | 35.0% | |
TTACGTACAGATGAAAGAGA+TGG | - | tig0045174:3189-3208 | Msa1465340:intergenic | 35.0% | |
! | AGGTTTTTCATAAACCTACC+TGG | + | tig0045174:3306-3325 | Msa1465340:intron | 35.0% |
ATATAAGCAAGCAAAAAGCC+AGG | - | tig0045174:3327-3346 | Msa1465340:intergenic | 35.0% | |
CCTAAAACTTAGTACTCGAT+CGG | + | tig0045174:3381-3400 | Msa1465340:intron | 35.0% | |
GAAATAAGTTCAATCTGCCA+AGG | - | tig0045174:3822-3841 | Msa1465340:intergenic | 35.0% | |
! | TCTCTCTATGTCAGTTGATA+AGG | - | tig0045174:3909-3928 | Msa1465340:intergenic | 35.0% |
! | ATTGAACTCTATCTCTGGAA+TGG | - | tig0045174:3936-3955 | Msa1465340:intergenic | 35.0% |
CATCATAATTCAACGACGAT+GGG | - | tig0045174:3967-3986 | Msa1465340:intergenic | 35.0% | |
!! | TGCTTTTCTTGATAGCATGA+AGG | + | tig0045174:3985-4004 | Msa1465340:CDS | 35.0% |
!! | GCTTTTCTTGATAGCATGAA+GGG | + | tig0045174:3986-4005 | Msa1465340:CDS | 35.0% |
GGCAGAAAAAAGATTAGGTA+TGG | - | tig0045174:4014-4033 | Msa1465340:intergenic | 35.0% | |
GTTGAGGCAGAAAAAAGATT+AGG | - | tig0045174:4019-4038 | Msa1465340:intergenic | 35.0% | |
!!! | TTTTTTGGTGTTGAGGTTGT+GGG | - | tig0045174:4089-4108 | Msa1465340:intergenic | 35.0% |
! | ATCCTTTTCAACAACCTCTA+TGG | - | tig0045174:4146-4165 | Msa1465340:intergenic | 35.0% |
GAGCGCCAGAAAATATGATT+AGG | - | tig0045174:1620-1639 | Msa1465340:intergenic | 40.0% | |
!! | ATTTTTCGATCAACACGGGT+GGG | - | tig0045174:1704-1723 | Msa1465340:intergenic | 40.0% |
!! | CCAGATTTTTCGATCAACAC+GGG | - | tig0045174:1708-1727 | Msa1465340:intergenic | 40.0% |
!! | GCCAGATTTTTCGATCAACA+CGG | - | tig0045174:1709-1728 | Msa1465340:intergenic | 40.0% |
!! | AGTTTCGGAATTTTGACCGA+TGG | - | tig0045174:1746-1765 | Msa1465340:intergenic | 40.0% |
TTACTTTCCACTAGGTCACT+TGG | + | tig0045174:1781-1800 | Msa1465340:CDS | 40.0% | |
!! | ATTGATAAGGGAGAGTGTCT+CGG | - | tig0045174:1831-1850 | Msa1465340:intergenic | 40.0% |
GGAACGGTAACCATTGATAA+GGG | - | tig0045174:1843-1862 | Msa1465340:intergenic | 40.0% | |
TGGAACGGTAACCATTGATA+AGG | - | tig0045174:1844-1863 | Msa1465340:intergenic | 40.0% | |
ATCAGCTAAGAGATCAACGT+GGG | - | tig0045174:1885-1904 | Msa1465340:intergenic | 40.0% | |
! | TCGTGAAAACCATTGGTGAT+GGG | - | tig0045174:1947-1966 | Msa1465340:intergenic | 40.0% |
TTCGTGAAAACCATTGGTGA+TGG | - | tig0045174:1948-1967 | Msa1465340:intergenic | 40.0% | |
ATCAATTTCGCGCATTCAGA+AGG | - | tig0045174:2076-2095 | Msa1465340:intergenic | 40.0% | |
! | ATTTGGGATTGTAGGTCAAG+TGG | - | tig0045174:2106-2125 | Msa1465340:intergenic | 40.0% |
AAATTGTGGATGTCCTTGAC+CGG | - | tig0045174:2145-2164 | Msa1465340:intergenic | 40.0% | |
TACTCCAGTTAGTGGTGATT+AGG | - | tig0045174:2213-2232 | Msa1465340:intergenic | 40.0% | |
AACGAACTTACTCCAGTTAG+TGG | - | tig0045174:2221-2240 | Msa1465340:intergenic | 40.0% | |
! | AAGTGCTGCTGCTAAGATAA+CGG | + | tig0045174:2348-2367 | Msa1465340:CDS | 40.0% |
AACGGAAAAATCCGTTATGG+AGG | + | tig0045174:2366-2385 | Msa1465340:CDS | 40.0% | |
AATCAATGACTCTCTCACAG+TGG | + | tig0045174:2878-2897 | Msa1465340:intron | 40.0% | |
ATCAATGACTCTCTCACAGT+GGG | + | tig0045174:2879-2898 | Msa1465340:intron | 40.0% | |
GTGTAAATTAAAGGGTCGAG+GGG | - | tig0045174:3115-3134 | Msa1465340:intergenic | 40.0% | |
GGTGTAAATTAAAGGGTCGA+GGG | - | tig0045174:3116-3135 | Msa1465340:intergenic | 40.0% | |
AGGTGTAAATTAAAGGGTCG+AGG | - | tig0045174:3117-3136 | Msa1465340:intergenic | 40.0% | |
! | TGTGCAGTATGCCATCTTTT+TGG | - | tig0045174:3243-3262 | Msa1465340:intergenic | 40.0% |
GGTTAATGTCTCTGAGTCAA+TGG | - | tig0045174:3269-3288 | Msa1465340:intergenic | 40.0% | |
! | CCGATCGAGTACTAAGTTTT+AGG | - | tig0045174:3384-3403 | Msa1465340:intergenic | 40.0% |
!! | TACTCGATCGGTCTTATTGT+AGG | + | tig0045174:3393-3412 | Msa1465340:intron | 40.0% |
!!! | CCAATTTTAGGACACCATGT+AGG | - | tig0045174:3449-3468 | Msa1465340:intergenic | 40.0% |
CCTACATGGTGTCCTAAAAT+TGG | + | tig0045174:3446-3465 | Msa1465340:intron | 40.0% | |
ATCCAAGTCAAGTAAGTCCT+TGG | + | tig0045174:3802-3821 | Msa1465340:intron | 40.0% | |
! | TTTTTGTGGGGGAATTGTAG+AGG | - | tig0045174:3861-3880 | Msa1465340:intergenic | 40.0% |
!! | AACTCTATCTCTGGAATGGA+GGG | - | tig0045174:3932-3951 | Msa1465340:intergenic | 40.0% |
GCATCATAATTCAACGACGA+TGG | - | tig0045174:3968-3987 | Msa1465340:intergenic | 40.0% | |
CAAAGAGTTGGAAGAAGTTG+AGG | - | tig0045174:4035-4054 | Msa1465340:intergenic | 40.0% | |
!!! | CTTTTTTGGTGTTGAGGTTG+TGG | - | tig0045174:4090-4109 | Msa1465340:intergenic | 40.0% |
GCTATTTGGTAAGACCATAG+AGG | + | tig0045174:4129-4148 | Msa1465340:CDS | 40.0% | |
GACCATAGAGGTTGTTGAAA+AGG | + | tig0045174:4141-4160 | Msa1465340:CDS | 40.0% | |
TTGCATGAGTCTCGTATCAA+TGG | + | tig0045174:4166-4185 | Msa1465340:CDS | 40.0% | |
TATCAATGGAGAGGATGGTT+CGG | + | tig0045174:4180-4199 | Msa1465340:CDS | 40.0% | |
!! | GATTTTTCGATCAACACGGG+TGG | - | tig0045174:1705-1724 | Msa1465340:intergenic | 45.0% |
! | CCCGTGTTGATCGAAAAATC+TGG | + | tig0045174:1705-1724 | Msa1465340:CDS | 45.0% |
TCGAAAAATCTGGCAGTGCT+TGG | + | tig0045174:1715-1734 | Msa1465340:CDS | 45.0% | |
GAGACACTCTCCCTTATCAA+TGG | + | tig0045174:1830-1849 | Msa1465340:CDS | 45.0% | |
GATCAGCTAAGAGATCAACG+TGG | - | tig0045174:1886-1905 | Msa1465340:intergenic | 45.0% | |
CTTCTAACTCCCATCACCAA+TGG | + | tig0045174:1935-1954 | Msa1465340:CDS | 45.0% | |
AGGAGCTTCGTGAAAACCAT+TGG | - | tig0045174:1954-1973 | Msa1465340:intergenic | 45.0% | |
GAGGTTCATGAAGACGAACA+AGG | + | tig0045174:1977-1996 | Msa1465340:CDS | 45.0% | |
GTTCATGAAGACGAACAAGG+TGG | + | tig0045174:1980-1999 | Msa1465340:CDS | 45.0% | |
AAGACGAACAAGGTGGTGAT+GGG | + | tig0045174:1987-2006 | Msa1465340:CDS | 45.0% | |
!!! | GGTGATGGGCTTGTTTTTTC+TGG | + | tig0045174:2001-2020 | Msa1465340:CDS | 45.0% |
ACCCCGTCTGATGCTAATAA+CGG | + | tig0045174:2034-2053 | Msa1465340:CDS | 45.0% | |
ACCGTTATTAGCATCAGACG+GGG | - | tig0045174:2038-2057 | Msa1465340:intergenic | 45.0% | |
CACCGTTATTAGCATCAGAC+GGG | - | tig0045174:2039-2058 | Msa1465340:intergenic | 45.0% | |
CCACCGTTATTAGCATCAGA+CGG | - | tig0045174:2040-2059 | Msa1465340:intergenic | 45.0% | |
TTTCGCGCATTCAGAAGGTA+CGG | - | tig0045174:2071-2090 | Msa1465340:intergenic | 45.0% | |
AAGTACCTGAGACGGCATTT+GGG | - | tig0045174:2122-2141 | Msa1465340:intergenic | 45.0% | |
GACACCTAATCACCACTAAC+TGG | + | tig0045174:2206-2225 | Msa1465340:CDS | 45.0% | |
CAATTCTGCTGCCTCCATAA+CGG | - | tig0045174:2380-2399 | Msa1465340:intergenic | 45.0% | |
! | ATTATCCGACGGCTAGTCAT+TGG | + | tig0045174:2431-2450 | Msa1465340:CDS | 45.0% |
! | TTACACCAATGACTAGCCGT+CGG | - | tig0045174:2439-2458 | Msa1465340:intergenic | 45.0% |
CTGATCCTTCTCATCATCCA+TGG | + | tig0045174:2596-2615 | Msa1465340:CDS | 45.0% | |
GAGCATGCTGTCCAAAAAGA+TGG | + | tig0045174:3229-3248 | Msa1465340:intron | 45.0% | |
AAGCAAGCAAAAAGCCAGGT+AGG | - | tig0045174:3323-3342 | Msa1465340:intergenic | 45.0% | |
TGCCAAGGACTTACTTGACT+TGG | - | tig0045174:3807-3826 | Msa1465340:intergenic | 45.0% | |
!! | GAACTCTATCTCTGGAATGG+AGG | - | tig0045174:3933-3952 | Msa1465340:intergenic | 45.0% |
TGAGTCTCGTATCAATGGAG+AGG | + | tig0045174:4171-4190 | Msa1465340:CDS | 45.0% | |
TCTCGTATCAATGGAGAGGA+TGG | + | tig0045174:4175-4194 | Msa1465340:CDS | 45.0% | |
!! | TATAAAATGTTTAAATTTAT+TGG | + | tig0045174:2912-2931 | Msa1465340:intron | 5.0% |
!! | TTTATTAGATATTATTATTA+AGG | + | tig0045174:2987-3006 | Msa1465340:intron | 5.0% |
!! | AAAATTGAAAAAATAATATA+AGG | - | tig0045174:3691-3710 | Msa1465340:intergenic | 5.0% |
GGGGGAAGCGATAAAGCTAT+CGG | - | tig0045174:1666-1685 | Msa1465340:intergenic | 50.0% | |
!! | TAGCTTTATCGCTTCCCCCA+TGG | + | tig0045174:1667-1686 | Msa1465340:CDS | 50.0% |
! | TGGGTTTCTGAGGATCCATG+GGG | - | tig0045174:1685-1704 | Msa1465340:intergenic | 50.0% |
! | GTGGGTTTCTGAGGATCCAT+GGG | - | tig0045174:1686-1705 | Msa1465340:intergenic | 50.0% |
AAAATCTGGCAGTGCTTGGC+CGG | + | tig0045174:1719-1738 | Msa1465340:CDS | 50.0% | |
!! | CGGAATTTTGACCGATGGTC+CGG | - | tig0045174:1741-1760 | Msa1465340:intergenic | 50.0% |
GCATGTTCCAAGTGACCTAG+TGG | - | tig0045174:1791-1810 | Msa1465340:intergenic | 50.0% | |
! | TGGTTTTCACGAAGCTCCTC+AGG | + | tig0045174:1955-1974 | Msa1465340:CDS | 50.0% |
! | TTTTCACGAAGCTCCTCAGG+AGG | + | tig0045174:1958-1977 | Msa1465340:CDS | 50.0% |
TCGTCTTCATGAACCTCCTG+AGG | - | tig0045174:1974-1993 | Msa1465340:intergenic | 50.0% | |
GAAGACGAACAAGGTGGTGA+TGG | + | tig0045174:1986-2005 | Msa1465340:CDS | 50.0% | |
CCGTCTGATGCTAATAACGG+TGG | + | tig0045174:2037-2056 | Msa1465340:CDS | 50.0% | |
TGGGATTGTAGGTCAAGTGG+CGG | - | tig0045174:2103-2122 | Msa1465340:intergenic | 50.0% | |
! | GAGACGGCATTTGGGATTGT+AGG | - | tig0045174:2114-2133 | Msa1465340:intergenic | 50.0% |
ACAATCCCAAATGCCGTCTC+AGG | + | tig0045174:2114-2133 | Msa1465340:CDS | 50.0% | |
! | GAAGTACCTGAGACGGCATT+TGG | - | tig0045174:2123-2142 | Msa1465340:intergenic | 50.0% |
AATGCCGTCTCAGGTACTTC+CGG | + | tig0045174:2123-2142 | Msa1465340:CDS | 50.0% | |
!! | TTGACCGGAAGTACCTGAGA+CGG | - | tig0045174:2130-2149 | Msa1465340:intergenic | 50.0% |
!! | GTGGTGATTAGGTGTCGCTT+GGG | - | tig0045174:2202-2221 | Msa1465340:intergenic | 50.0% |
!! | AGTGGTGATTAGGTGTCGCT+TGG | - | tig0045174:2203-2222 | Msa1465340:intergenic | 50.0% |
AGATCTTCATCGGAATCCGC+AGG | + | tig0045174:2317-2336 | Msa1465340:CDS | 50.0% | |
!! | CAGCACTTAACTTGTGCCTG+CGG | - | tig0045174:2336-2355 | Msa1465340:intergenic | 50.0% |
CGTTATGGAGGCAGCAGAAT+TGG | + | tig0045174:2378-2397 | Msa1465340:CDS | 50.0% | |
TATGGAGGCAGCAGAATTGG+CGG | + | tig0045174:2381-2400 | Msa1465340:CDS | 50.0% | |
ATGCGCCATGGATGATGAGA+AGG | - | tig0045174:2604-2623 | Msa1465340:intergenic | 50.0% | |
! | GGGTTTCTGAGGATCCATGG+GGG | - | tig0045174:1684-1703 | Msa1465340:intergenic | 55.0% |
! | GGTGGGTTTCTGAGGATCCA+TGG | - | tig0045174:1687-1706 | Msa1465340:intergenic | 55.0% |
! | TCAACACGGGTGGGTTTCTG+AGG | - | tig0045174:1695-1714 | Msa1465340:intergenic | 55.0% |
!! | GTGTCTCGGTGTTAGGGGAA+GGG | - | tig0045174:1817-1836 | Msa1465340:intergenic | 55.0% |
!! | AGTGTCTCGGTGTTAGGGGA+AGG | - | tig0045174:1818-1837 | Msa1465340:intergenic | 55.0% |
!! | GGAGAGTGTCTCGGTGTTAG+GGG | - | tig0045174:1822-1841 | Msa1465340:intergenic | 55.0% |
!! | GGGAGAGTGTCTCGGTGTTA+GGG | - | tig0045174:1823-1842 | Msa1465340:intergenic | 55.0% |
!! | AGGGAGAGTGTCTCGGTGTT+AGG | - | tig0045174:1824-1843 | Msa1465340:intergenic | 55.0% |
! | CGACGCAGGGAATGATGGAA+CGG | - | tig0045174:1859-1878 | Msa1465340:intergenic | 55.0% |
GGGATTGTAGGTCAAGTGGC+GGG | - | tig0045174:2102-2121 | Msa1465340:intergenic | 55.0% | |
GTCTCAGGTACTTCCGGTCA+AGG | + | tig0045174:2129-2148 | Msa1465340:CDS | 55.0% | |
AACTTTCGCCACACCTACCG+TGG | + | tig0045174:2172-2191 | Msa1465340:CDS | 55.0% | |
ACTTTCGCCACACCTACCGT+GGG | + | tig0045174:2173-2192 | Msa1465340:CDS | 55.0% | |
! | GGCAGCAGAATTGGCGGATA+AGG | + | tig0045174:2387-2406 | Msa1465340:CDS | 55.0% |
TCATCCATGGCGCATGCTTC+AGG | + | tig0045174:2609-2628 | Msa1465340:CDS | 55.0% | |
CATACCTGAAGCATGCGCCA+TGG | - | tig0045174:2616-2635 | Msa1465340:intergenic | 55.0% | |
! | TAGAGGCAGTGCTGGAGTGT+GGG | - | tig0045174:3844-3863 | Msa1465340:intergenic | 55.0% |
GGGAATTGTAGAGGCAGTGC+TGG | - | tig0045174:3852-3871 | Msa1465340:intergenic | 55.0% | |
GGAGACGACGCAGGGAATGA+TGG | - | tig0045174:1864-1883 | Msa1465340:intergenic | 60.0% | |
TCAACGTGGGAGACGACGCA+GGG | - | tig0045174:1872-1891 | Msa1465340:intergenic | 60.0% | |
ATCAACGTGGGAGACGACGC+AGG | - | tig0045174:1873-1892 | Msa1465340:intergenic | 60.0% | |
! | GTAGAGGCAGTGCTGGAGTG+TGG | - | tig0045174:3845-3864 | Msa1465340:intergenic | 60.0% |
GCAGTGCTTGGCCGGACCAT+CGG | + | tig0045174:1727-1746 | Msa1465340:CDS | 65.0% | |
TGGGAGACCCACGGTAGGTG+TGG | - | tig0045174:2183-2202 | Msa1465340:intergenic | 65.0% | |
TCGCTTGGGAGACCCACGGT+AGG | - | tig0045174:2188-2207 | Msa1465340:intergenic | 65.0% | |
!! | GGTGTCGCTTGGGAGACCCA+CGG | - | tig0045174:2192-2211 | Msa1465340:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0045174 | gene | 1608 | 4207 | 1608 | ID=Msa1465340;Name=Msa1465340 |
tig0045174 | mRNA | 1608 | 4207 | 1608 | ID=Msa1465340-mRNA-1;Parent=Msa1465340;Name=Msa1465340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|457 |
tig0045174 | exon | 1608 | 2630 | 1608 | ID=Msa1465340-mRNA-1:exon:24762;Parent=Msa1465340-mRNA-1 |
tig0045174 | exon | 3771 | 3812 | 3771 | ID=Msa1465340-mRNA-1:exon:24763;Parent=Msa1465340-mRNA-1 |
tig0045174 | exon | 3899 | 4207 | 3899 | ID=Msa1465340-mRNA-1:exon:24764;Parent=Msa1465340-mRNA-1 |
tig0045174 | CDS | 1608 | 2630 | 1608 | ID=Msa1465340-mRNA-1:cds;Parent=Msa1465340-mRNA-1 |
tig0045174 | CDS | 3771 | 3812 | 3771 | ID=Msa1465340-mRNA-1:cds;Parent=Msa1465340-mRNA-1 |
tig0045174 | CDS | 3899 | 4207 | 3899 | ID=Msa1465340-mRNA-1:cds;Parent=Msa1465340-mRNA-1 |
Gene Sequence |
Protein sequence |