AlfalfaGEDB | Msa1465340

M. sativa cultivar zhongmu-4 / Msa1465340

KEGG: -
GO: GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465340	XP_003616592.1	83.550	462	43	3	27	457	1	460	0.0	744

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465340	sp\|Q84WU6\|ARFQ_ARATH	41.096	365	155	7	35	352	16	367	8.44e-83	269

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465340	G7KGW8	83.550	462	43	3	27	457	1	460	0.0	744

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TFs/TRs:

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Gene ID	Type	Classification
Msa1465340	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465340	MtrunA17_Chr5g0436761	83.550	462	43	3	27	457	1	460	0.0	744
Msa1465340	MtrunA17_Chr5g0417211	57.991	438	141	8	27	457	1	402	2.47e-162	464
Msa1465340	MtrunA17_Chr5g0417281	49.219	512	165	10	34	457	7	511	4.17e-150	437
Msa1465340	MtrunA17_Chr5g0424931	47.126	522	169	11	32	457	13	523	3.61e-139	409
Msa1465340	MtrunA17_Chr2g0289221	62.187	320	114	4	25	342	7	321	8.64e-137	397
Msa1465340	MtrunA17_Chr1g0178011	47.321	448	197	13	27	447	1	436	3.44e-119	356
Msa1465340	MtrunA17_Chr2g0277461	42.291	454	222	14	30	455	5	446	1.02e-96	298
Msa1465340	MtrunA17_Chr5g0425261	47.761	335	148	7	32	353	6	326	2.31e-90	279
Msa1465340	MtrunA17_Chr5g0424801	47.463	335	149	8	32	353	6	326	7.00e-90	278
Msa1465340	MtrunA17_Chr5g0424741	43.883	376	159	10	31	363	5	371	3.09e-87	276

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465340	AT1G77850.2	41.096	365	155	7	35	352	16	367	7.62e-84	270
Msa1465340	AT1G77850.1	41.096	365	155	7	35	352	16	367	8.58e-84	269
Msa1465340	AT4G30080.1	38.303	389	162	9	23	352	4	373	2.45e-74	246
Msa1465340	AT2G28350.2	37.931	377	163	9	35	352	7	371	7.34e-68	229
Msa1465340	AT2G28350.1	37.931	377	163	9	35	352	7	371	7.89e-68	229
Msa1465340	AT5G37020.2	34.985	343	181	12	35	351	19	345	2.00e-55	197
Msa1465340	AT5G37020.1	34.985	343	181	12	35	351	19	345	3.27e-55	197
Msa1465340	AT1G30330.1	34.160	363	192	11	17	351	3	346	2.11e-53	192
Msa1465340	AT1G30330.3	34.341	364	192	11	17	351	3	348	2.72e-53	192
Msa1465340	AT1G30330.2	34.341	364	192	11	17	351	3	348	2.72e-53	192

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Find 104 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGAGAATTTAGTTT+CGG	0.371328	tig0045174:-1758	Msa1465340:intergenic
AAAATCTGGCAGTGCTTGGC+CGG	0.457026	tig0045174:+1719	Msa1465340:CDS
AAATTGTGGATGTCCTTGAC+CGG	0.574466	tig0045174:-2142	Msa1465340:intergenic
AACGAACTTACTCCAGTTAG+TGG	0.466764	tig0045174:-2218	Msa1465340:intergenic
AACTCTATCTCTGGAATGGA+GGG	0.529089	tig0045174:-3929	Msa1465340:intergenic
AACTTTCGCCACACCTACCG+TGG	0.527055	tig0045174:+2172	Msa1465340:CDS
AAGAAATTGAACTCTATCTC+TGG	0.424200	tig0045174:-3938	Msa1465340:intergenic
AAGACGAACAAGGTGGTGAT+GGG	0.566040	tig0045174:+1987	Msa1465340:CDS
AAGTACCTGAGACGGCATTT+GGG	0.489716	tig0045174:-2119	Msa1465340:intergenic
AAGTGCTGCTGCTAAGATAA+CGG	0.557189	tig0045174:+2348	Msa1465340:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAGTTCCAAACAAAATTG+TGG	-	tig0045174:2159-2178	Msa1465340:intergenic	30.0%
GACACAAAGAAAATTATTGG+CGG	+	tig0045174:2241-2260	Msa1465340:CDS	30.0%
GATAAAGATGAGATCTTCAT+CGG	+	tig0045174:2307-2326	Msa1465340:CDS	30.0%
ATGCAAATTAATTGGCAATC+TGG	+	tig0045174:2493-2512	Msa1465340:CDS	30.0%
TGTATACATAAGACTAGAGT+CGG	+	tig0045174:3058-3077	Msa1465340:intron	30.0%
TGGAAGAAACACAAGATAAT+AGG	-	tig0045174:3137-3156	Msa1465340:intergenic	30.0%
TATATTTAAGGGGTTCAAGA+TGG	-	tig0045174:3157-3176	Msa1465340:intergenic	30.0%
ATCTTGAACCCCTTAAATAT+AGG	+	tig0045174:3156-3175	Msa1465340:intron	30.0%
TCTTGAACCCCTTAAATATA+GGG	+	tig0045174:3157-3176	Msa1465340:intron	30.0%
ACCTTTGATGTCAATAGAAA+AGG	-	tig0045174:3290-3309	Msa1465340:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0045174	gene	1608	4207	1608	ID=Msa1465340;Name=Msa1465340
tig0045174	mRNA	1608	4207	1608	ID=Msa1465340-mRNA-1;Parent=Msa1465340;Name=Msa1465340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|1\|1\|3\|0\|457
tig0045174	exon	1608	2630	1608	ID=Msa1465340-mRNA-1:exon:24762;Parent=Msa1465340-mRNA-1
tig0045174	exon	3771	3812	3771	ID=Msa1465340-mRNA-1:exon:24763;Parent=Msa1465340-mRNA-1
tig0045174	exon	3899	4207	3899	ID=Msa1465340-mRNA-1:exon:24764;Parent=Msa1465340-mRNA-1
tig0045174	CDS	1608	2630	1608	ID=Msa1465340-mRNA-1:cds;Parent=Msa1465340-mRNA-1
tig0045174	CDS	3771	3812	3771	ID=Msa1465340-mRNA-1:cds;Parent=Msa1465340-mRNA-1
tig0045174	CDS	3899	4207	3899	ID=Msa1465340-mRNA-1:cds;Parent=Msa1465340-mRNA-1

Gene Sequence

>Msa1465340

TTGAAAAACCCTAATCATATTTTCTGGCGCTCTCTAACAAATTCTTTCTTCTCTTCCGATAGCTTTATCGCTTCCCCCATGGATCCTCAGAAACCCACCCGTGTTGATCGAAAAATCTGGCAGTGCTTGGCCGGACCATCGGTCAAAATTCCGAAACTAAATTCTCAAGTTTTTTACTTTCCACTAGGTCACTTGGAACATGCATGCCCTTCCCCTAACACCGAGACACTCTCCCTTATCAATGGTTACCGTTCCATCATTCCCTGCGTCGTCTCCCACGTTGATCTCTTAGCTGATCTTCAAACCGATGAAGTCTTTGCAAAACTGCTTCTAACTCCCATCACCAATGGTTTTCACGAAGCTCCTCAGGAGGTTCATGAAGACGAACAAGGTGGTGATGGGCTTGTTTTTTCTGGCAAGACTCTCACCCCGTCTGATGCTAATAACGGTGGTGCATTCTCCGTACCTTCTGAATGCGCGAAATTGATATTCCCGCCACTTGACCTACAATCCCAAATGCCGTCTCAGGTACTTCCGGTCAAGGACATCCACAATTTTGTTTGGAACTTTCGCCACACCTACCGTGGGTCTCCCAAGCGACACCTAATCACCACTAACTGGAGTAAGTTCGTTGACACAAAGAAAATTATTGGCGGCGATTCCCTCGTTTTAATGAAAAATTCTAAAGATAAAGATAAAGATAAAGATGAGATCTTCATCGGAATCCGCAGGCACAAGTTAAGTGCTGCTGCTAAGATAACGGAAAAATCCGTTATGGAGGCAGCAGAATTGGCGGATAAGGACATGACTTTTGAAGTTATTTATTATCCGACGGCTAGTCATTGGTGTAATTTTGTGGTGGAAGCTGAAGTTGTAAAGAAAGCAATGCAAATTAATTGGCAATCTGGAATGAGAGTTAAACTTTGTTTGAAGACTGATGAATCTTCAAAGAGAAGCTCAATTTTTCAAGGGACAGTATCTGCTTTATCTGATCCTTCTCATCATCCATGGCGCATGCTTCAGGTTAACTGGGATGAATCTGAAGTCTCTCAAAATCCAAGTCAAGGTTCTGCCTTATCAACTGACATAGAGAGACCCTCCATTCCAGAGATAGAGTTCAATTTCTTAAACCCATCGTCGTTGAATTATGATGCTTTTCTTGATAGCATGAAGGGAACCATACCTAATCTTTTTTCTGCCTCAACTTCTTCCAACTCTTTGAATGATAATGACAATGGTTTTGTTGAAGGTACCCACAACCTCAACACCAAAAAAGTTAATCATGGTTCTATTAAGCTATTTGGTAAGACCATAGAGGTTGTTGAAAAGGATTTGCATGAGTCTCGTATCAATGGAGAGGATGGTTCGGAATAA

Protein sequence

>Msa1465340

LKNPNHIFWRSLTNSFFSSDSFIASPMDPQKPTRVDRKIWQCLAGPSVKIPKLNSQVFYFPLGHLEHACPSPNTETLSLINGYRSIIPCVVSHVDLLADLQTDEVFAKLLLTPITNGFHEAPQEVHEDEQGGDGLVFSGKTLTPSDANNGGAFSVPSECAKLIFPPLDLQSQMPSQVLPVKDIHNFVWNFRHTYRGSPKRHLITTNWSKFVDTKKIIGGDSLVLMKNSKDKDKDKDEIFIGIRRHKLSAAAKITEKSVMEAAELADKDMTFEVIYYPTASHWCNFVVEAEVVKKAMQINWQSGMRVKLCLKTDESSKRSSIFQGTVSALSDPSHHPWRMLQVNWDESEVSQNPSQGSALSTDIERPSIPEIEFNFLNPSSLNYDAFLDSMKGTIPNLFSASTSSNSLNDNDNGFVEGTHNLNTKKVNHGSIKLFGKTIEVVEKDLHESRINGEDGSE*