AlfalfaGEDB | Msa1465560

M. sativa cultivar zhongmu-4 / Msa1465560

KEGG: -
GO: -
PFAM: PF13302.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465560	XP_003610742.1	87.565	193	22	1	1	193	1	191	4.34e-118	343

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465560	sp\|P05332\|YP20_BACLI	32.386	176	107	4	19	187	2	172	1.11e-20	87.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465560	G7K3P7	87.565	193	22	1	1	193	1	191	2.07e-118	343

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TFs/TRs:

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Gene ID	Type	Classification
Msa1465560	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465560	MtrunA17_Chr5g0394631	85.204	196	24	3	1	193	208	401	1.77e-114	332
Msa1465560	MtrunA17_Chr5g0394631	66.484	182	54	3	9	184	1	181	3.31e-75	232
Msa1465560	MtrunA17_Chr5g0394621	70.681	191	49	3	9	193	1	190	8.33e-89	259
Msa1465560	MtrunA17_Chr1g0204951	61.538	182	63	4	16	193	12	190	4.79e-74	221
Msa1465560	MtrunA17_Chr1g0204971	59.659	176	66	3	20	193	18	190	2.83e-71	214
Msa1465560	MtrunA17_Chr7g0223361	45.349	172	89	3	20	190	3	170	2.54e-42	140
Msa1465560	MtrunA17_Chr7g0223351	44.379	169	86	4	24	190	7	169	1.97e-39	133
Msa1465560	MtrunA17_Chr7g0273661	43.312	157	83	3	21	175	4	156	2.96e-37	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465560	AT2G32030.1	48.705	193	86	6	1	190	3	185	8.31e-54	171
Msa1465560	AT2G32020.1	51.765	170	72	5	24	190	18	180	7.51e-52	165
Msa1465560	AT3G22560.1	38.857	175	99	4	20	190	2	172	8.90e-34	119

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Find 38 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCCAATAGCATGATCGTTA+TGG	0.457877	tig0045301:+1099	Msa1465560:intergenic
ACCTCGATGATCTCATGGTT+TGG	0.401354	tig0045301:-1235	Msa1465560:CDS
AGGATCGCATGTGCAGAACT+TGG	0.454084	tig0045301:-1038	Msa1465560:CDS
ATGTTCTAGGCTCTAAATAC+TGG	0.313478	tig0045301:-1013	Msa1465560:CDS
ATTCAGTGAATTTCCATACT+TGG	0.413337	tig0045301:-943	Msa1465560:CDS
ATTGCAGGACTTTGTTCCTT+TGG	0.289499	tig0045301:-511	Msa1465560:intron
CAAAGAGTAGTTGAGAAAGT+TGG	0.450786	tig0045301:-879	Msa1465560:CDS
CAAATCAATGATCTCTTCTT+TGG	0.204931	tig0045301:+1292	Msa1465560:intergenic
CACATGTGCTGTGAAACAAA+TGG	0.647600	tig0045301:-976	Msa1465560:CDS
CATTTGTTTCACAGCACATG+TGG	0.625218	tig0045301:+977	Msa1465560:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATCAATGATCTCTTCTT+TGG	+	tig0045301:546-565	None:intergenic	30.0%
TCATTAAAAATATGGCAAGC+AGG	-	tig0045301:690-709	Msa1465560:intron	30.0%
ATTCAGTGAATTTCCATACT+TGG	-	tig0045301:892-911	Msa1465560:CDS	30.0%
CTACTGATCTTAAACTAATG+AGG	-	tig0045301:1059-1078	Msa1465560:CDS	30.0%
TAAACTAATGAGGATGTTCA+AGG	-	tig0045301:1069-1088	Msa1465560:CDS	30.0%
ATTGCTGAAATGTAAGTTTG+TGG	-	tig0045301:1106-1125	Msa1465560:CDS	30.0%
CAAATCAATGATCTCTTCTT+TGG	+	tig0045301:546-565	Msa1465560:intergenic	30.0%
TCATTAAAAATATGGCAAGC+AGG	-	tig0045301:690-709	Msa1465560:intron	30.0%
ATTCAGTGAATTTCCATACT+TGG	-	tig0045301:892-911	Msa1465560:CDS	30.0%
CTACTGATCTTAAACTAATG+AGG	-	tig0045301:1059-1078	Msa1465560:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0045301	gene	497	1360	497	ID=Msa1465560;Name=Msa1465560
tig0045301	mRNA	497	1360	497	ID=Msa1465560-mRNA-1;Parent=Msa1465560;Name=Msa1465560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|207
tig0045301	exon	767	1360	767	ID=Msa1465560-mRNA-1:exon:24820;Parent=Msa1465560-mRNA-1
tig0045301	exon	497	526	497	ID=Msa1465560-mRNA-1:exon:24819;Parent=Msa1465560-mRNA-1
tig0045301	CDS	767	1360	767	ID=Msa1465560-mRNA-1:cds;Parent=Msa1465560-mRNA-1
tig0045301	CDS	497	526	497	ID=Msa1465560-mRNA-1:cds;Parent=Msa1465560-mRNA-1

Gene Sequence

>Msa1465560

ATGGAGCAAAACACAAGTATTATGATAGAGCAACTTTCTATTTCTTCCAAAGAAGAGATCATTGATTTGAACCAAATCACACTCCGATCTTTTCATCTTTCTGACCTCGATGATCTCATGGTTTGGCATACTGATGAAAAAGTGGCCAAGTTCTGGGGTGAACCTTACACCAGCAAAGACCAAGGCATCAACTTCATTAAAAATATGGCAAGCAGGTATCTAAGTTGCAAAGCAATATGCCATAACGATCATGCTATTGGGTGTATTAAGTTGTCCTTGAGTTCACTTGATGATAAGAGGAGGATCGCATGTGCAGAACTTGGGTATGTTCTAGGCTCTAAATACTGGGGTAAAGGGATTGCCACATGTGCTGTGAAACAAATGGTTAAGGTTGCATTCAGTGAATTTCCATACTTGGAAAGGCTTCAAGCTCTTGTTGATGTGGATAATTTAAGGTCGCAAAGAGTAGTTGAGAAAGTTGGTTTTCAAAAAGAGGGAGTTCTTAGGAAGTATGTATTTTTTAAAGGAAAAAGCAGAGATATGATAATGTTCAGTCTTCTTTCTACTGATCTTAAACTAATGAGGATGTTCAAGGACTTTGTTCCTTTGGTTTTGGATCCATGA

Protein sequence

>Msa1465560

MEQNTSIMIEQLSISSKEEIIDLNQITLRSFHLSDLDDLMVWHTDEKVAKFWGEPYTSKDQGINFIKNMASRYLSCKAICHNDHAIGCIKLSLSSLDDKRRIACAELGYVLGSKYWGKGIATCAVKQMVKVAFSEFPYLERLQALVDVDNLRSQRVVEKVGFQKEGVLRKYVFFKGKSRDMIMFSLLSTDLKLMRMFKDFVPLVLDP*