Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465560 | XP_003610742.1 | 87.565 | 193 | 22 | 1 | 1 | 193 | 1 | 191 | 4.34e-118 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465560 | sp|P05332|YP20_BACLI | 32.386 | 176 | 107 | 4 | 19 | 187 | 2 | 172 | 1.11e-20 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465560 | G7K3P7 | 87.565 | 193 | 22 | 1 | 1 | 193 | 1 | 191 | 2.07e-118 | 343 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1465560 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465560 | MtrunA17_Chr5g0394631 | 85.204 | 196 | 24 | 3 | 1 | 193 | 208 | 401 | 1.77e-114 | 332 |
| Msa1465560 | MtrunA17_Chr5g0394631 | 66.484 | 182 | 54 | 3 | 9 | 184 | 1 | 181 | 3.31e-75 | 232 |
| Msa1465560 | MtrunA17_Chr5g0394621 | 70.681 | 191 | 49 | 3 | 9 | 193 | 1 | 190 | 8.33e-89 | 259 |
| Msa1465560 | MtrunA17_Chr1g0204951 | 61.538 | 182 | 63 | 4 | 16 | 193 | 12 | 190 | 4.79e-74 | 221 |
| Msa1465560 | MtrunA17_Chr1g0204971 | 59.659 | 176 | 66 | 3 | 20 | 193 | 18 | 190 | 2.83e-71 | 214 |
| Msa1465560 | MtrunA17_Chr7g0223361 | 45.349 | 172 | 89 | 3 | 20 | 190 | 3 | 170 | 2.54e-42 | 140 |
| Msa1465560 | MtrunA17_Chr7g0223351 | 44.379 | 169 | 86 | 4 | 24 | 190 | 7 | 169 | 1.97e-39 | 133 |
| Msa1465560 | MtrunA17_Chr7g0273661 | 43.312 | 157 | 83 | 3 | 21 | 175 | 4 | 156 | 2.96e-37 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465560 | AT2G32030.1 | 48.705 | 193 | 86 | 6 | 1 | 190 | 3 | 185 | 8.31e-54 | 171 |
| Msa1465560 | AT2G32020.1 | 51.765 | 170 | 72 | 5 | 24 | 190 | 18 | 180 | 7.51e-52 | 165 |
| Msa1465560 | AT3G22560.1 | 38.857 | 175 | 99 | 4 | 20 | 190 | 2 | 172 | 8.90e-34 | 119 |
Find 38 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGATGTGGATAATTTA+AGG | 0.203228 | tig0045301:-905 | Msa1465560:CDS |
| CAAATCAATGATCTCTTCTT+TGG | 0.204931 | tig0045301:+1292 | Msa1465560:intergenic |
| GGACTTTGTTCCTTTGGTTT+TGG | 0.218717 | tig0045301:-505 | Msa1465560:CDS |
| GTTGATGCCTTGGTCTTTGC+TGG | 0.262298 | tig0045301:+1169 | Msa1465560:intergenic |
| GCTTGAAGCCTTTCCAAGTA+TGG | 0.276638 | tig0045301:+930 | Msa1465560:intergenic |
| TGCCATAACGATCATGCTAT+TGG | 0.288303 | tig0045301:-1101 | Msa1465560:CDS |
| ATTGCAGGACTTTGTTCCTT+TGG | 0.289499 | tig0045301:-511 | Msa1465560:intron |
| GCAGAACTTGGGTATGTTCT+AGG | 0.307665 | tig0045301:-1026 | Msa1465560:CDS |
| ATGTTCTAGGCTCTAAATAC+TGG | 0.313478 | tig0045301:-1013 | Msa1465560:CDS |
| CCTTGGTCTTTGCTGGTGTA+AGG | 0.327596 | tig0045301:+1176 | Msa1465560:intergenic |
| GAAAAGATCGGAGTGTGATT+TGG | 0.386444 | tig0045301:+1267 | Msa1465560:intergenic |
| ACCTCGATGATCTCATGGTT+TGG | 0.401354 | tig0045301:-1235 | Msa1465560:CDS |
| GGCTCTAAATACTGGGGTAA+AGG | 0.409375 | tig0045301:-1005 | Msa1465560:CDS |
| ATTCAGTGAATTTCCATACT+TGG | 0.413337 | tig0045301:-943 | Msa1465560:CDS |
| GCCATAACGATCATGCTATT+GGG | 0.423146 | tig0045301:-1100 | Msa1465560:CDS |
| TTCTGACCTCGATGATCTCA+TGG | 0.433346 | tig0045301:-1240 | Msa1465560:CDS |
| GCTCTAAATACTGGGGTAAA+GGG | 0.442106 | tig0045301:-1004 | Msa1465560:CDS |
| TGAGTTCACTTGATGATAAG+AGG | 0.442621 | tig0045301:-1061 | Msa1465560:CDS |
| CAAAGAGTAGTTGAGAAAGT+TGG | 0.450786 | tig0045301:-879 | Msa1465560:CDS |
| AGGATCGCATGTGCAGAACT+TGG | 0.454084 | tig0045301:-1038 | Msa1465560:CDS |
| ACCCAATAGCATGATCGTTA+TGG | 0.457877 | tig0045301:+1099 | Msa1465560:intergenic |
| CTACTGATCTTAAACTAATG+AGG | 0.474389 | tig0045301:-776 | Msa1465560:CDS |
| GTAAGGTTCACCCCAGAACT+TGG | 0.480302 | tig0045301:+1193 | Msa1465560:intergenic |
| TAAACTAATGAGGATGTTCA+AGG | 0.483858 | tig0045301:-766 | Msa1465560:intron |
| GTGAATTTCCATACTTGGAA+AGG | 0.490341 | tig0045301:-938 | Msa1465560:CDS |
| TGCTGTGAAACAAATGGTTA+AGG | 0.500098 | tig0045301:-970 | Msa1465560:CDS |
| TGTTCTAGGCTCTAAATACT+GGG | 0.526941 | tig0045301:-1012 | Msa1465560:CDS |
| CTTATCATCAAGTGAACTCA+AGG | 0.556721 | tig0045301:+1064 | Msa1465560:intergenic |
| GCTTCAAGCTCTTGTTGATG+TGG | 0.560091 | tig0045301:-916 | Msa1465560:CDS |
| GGATCGCATGTGCAGAACTT+GGG | 0.585194 | tig0045301:-1037 | Msa1465560:CDS |
| GGTCAGAAAGATGAAAAGAT+CGG | 0.592412 | tig0045301:+1255 | Msa1465560:intergenic |
| TTTCATGGATCCAAAACCAA+AGG | 0.622728 | tig0045301:+495 | Msa1465560:intergenic |
| CATTTGTTTCACAGCACATG+TGG | 0.625218 | tig0045301:+977 | Msa1465560:intergenic |
| CACATGTGCTGTGAAACAAA+TGG | 0.647600 | tig0045301:-976 | Msa1465560:CDS |
| GTTCACTTGATGATAAGAGG+AGG | 0.664638 | tig0045301:-1058 | Msa1465560:CDS |
| CCTTACACCAGCAAAGACCA+AGG | 0.673207 | tig0045301:-1176 | Msa1465560:CDS |
| GTTCTAGGCTCTAAATACTG+GGG | 0.712321 | tig0045301:-1011 | Msa1465560:CDS |
| GCCAAACCATGAGATCATCG+AGG | 0.781144 | tig0045301:+1234 | Msa1465550:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATCAACTTCATTAAAAATA+TGG | - | tig0045301:682-701 | Msa1465560:intron | 20.0% |
| !!! | AGGAAGTATGTATTTTTTAA+AGG | - | tig0045301:1001-1020 | Msa1465560:CDS | 20.0% |
| !! | CATCAACTTCATTAAAAATA+TGG | - | tig0045301:682-701 | Msa1465560:intron | 20.0% |
| !!! | AGGAAGTATGTATTTTTTAA+AGG | - | tig0045301:1001-1020 | Msa1465560:CDS | 20.0% |
| ! | TTGTTGATGTGGATAATTTA+AGG | - | tig0045301:930-949 | Msa1465560:CDS | 25.0% |
| !!! | AAAGTTGGTTTTCAAAAAGA+GGG | - | tig0045301:971-990 | Msa1465560:CDS | 25.0% |
| ! | AAACAACTCTAATTAAGAGA+CGG | + | tig0045301:1193-1212 | Msa1465560:intergenic | 25.0% |
| ! | TTGTTGATGTGGATAATTTA+AGG | - | tig0045301:930-949 | Msa1465560:CDS | 25.0% |
| !!! | AAAGTTGGTTTTCAAAAAGA+GGG | - | tig0045301:971-990 | Msa1465560:CDS | 25.0% |
| ! | AAACAACTCTAATTAAGAGA+CGG | + | tig0045301:1193-1212 | Msa1465560:intergenic | 25.0% |
| CAAATCAATGATCTCTTCTT+TGG | + | tig0045301:546-565 | None:intergenic | 30.0% | |
| !!! | TTTTAATGAAGTTGATGCCT+TGG | + | tig0045301:679-698 | Msa1465560:intergenic | 30.0% |
| TCATTAAAAATATGGCAAGC+AGG | - | tig0045301:690-709 | Msa1465560:intron | 30.0% | |
| ATTCAGTGAATTTCCATACT+TGG | - | tig0045301:892-911 | Msa1465560:CDS | 30.0% | |
| !!! | GAAAGTTGGTTTTCAAAAAG+AGG | - | tig0045301:970-989 | Msa1465560:CDS | 30.0% |
| CTACTGATCTTAAACTAATG+AGG | - | tig0045301:1059-1078 | Msa1465560:CDS | 30.0% | |
| TAAACTAATGAGGATGTTCA+AGG | - | tig0045301:1069-1088 | Msa1465560:CDS | 30.0% | |
| ATTGCTGAAATGTAAGTTTG+TGG | - | tig0045301:1106-1125 | Msa1465560:CDS | 30.0% | |
| ! | ATCGTGTTATTCATAGATGA+TGG | - | tig0045301:1234-1253 | Msa1465560:CDS | 30.0% |
| ! | TCGTGTTATTCATAGATGAT+GGG | - | tig0045301:1235-1254 | Msa1465560:CDS | 30.0% |
| CAAATCAATGATCTCTTCTT+TGG | + | tig0045301:546-565 | Msa1465560:intergenic | 30.0% | |
| !!! | TTTTAATGAAGTTGATGCCT+TGG | + | tig0045301:679-698 | Msa1465560:intergenic | 30.0% |
| TCATTAAAAATATGGCAAGC+AGG | - | tig0045301:690-709 | Msa1465560:intron | 30.0% | |
| ATTCAGTGAATTTCCATACT+TGG | - | tig0045301:892-911 | Msa1465560:CDS | 30.0% | |
| !!! | GAAAGTTGGTTTTCAAAAAG+AGG | - | tig0045301:970-989 | Msa1465560:CDS | 30.0% |
| CTACTGATCTTAAACTAATG+AGG | - | tig0045301:1059-1078 | Msa1465560:CDS | 30.0% | |
| TAAACTAATGAGGATGTTCA+AGG | - | tig0045301:1069-1088 | Msa1465560:CDS | 30.0% | |
| ATTGCTGAAATGTAAGTTTG+TGG | - | tig0045301:1106-1125 | Msa1465560:CDS | 30.0% | |
| ! | ATCGTGTTATTCATAGATGA+TGG | - | tig0045301:1234-1253 | Msa1465560:CDS | 30.0% |
| ! | TCGTGTTATTCATAGATGAT+GGG | - | tig0045301:1235-1254 | Msa1465560:CDS | 30.0% |
| GGTCAGAAAGATGAAAAGAT+CGG | + | tig0045301:583-602 | None:intergenic | 35.0% | |
| TTGGCATACTGATGAAAAAG+TGG | - | tig0045301:619-638 | Msa1465560:intron | 35.0% | |
| CTTATCATCAAGTGAACTCA+AGG | + | tig0045301:774-793 | Msa1465560:intergenic | 35.0% | |
| ! | TGAGTTCACTTGATGATAAG+AGG | - | tig0045301:774-793 | Msa1465560:CDS | 35.0% |
| !! | ATGTTCTAGGCTCTAAATAC+TGG | - | tig0045301:822-841 | Msa1465560:CDS | 35.0% |
| !! | TGTTCTAGGCTCTAAATACT+GGG | - | tig0045301:823-842 | Msa1465560:CDS | 35.0% |
| TGCTGTGAAACAAATGGTTA+AGG | - | tig0045301:865-884 | Msa1465560:CDS | 35.0% | |
| GTGAATTTCCATACTTGGAA+AGG | - | tig0045301:897-916 | Msa1465560:CDS | 35.0% | |
| CAAAGAGTAGTTGAGAAAGT+TGG | - | tig0045301:956-975 | Msa1465560:CDS | 35.0% | |
| TTCAAAAAGAGGGAGTTCTT+AGG | - | tig0045301:981-1000 | Msa1465560:CDS | 35.0% | |
| TGTAAGTTTGTGGATGTTCA+AGG | - | tig0045301:1116-1135 | Msa1465560:CDS | 35.0% | |
| TTCAAGGACATCAACTAATG+AGG | - | tig0045301:1132-1151 | Msa1465560:CDS | 35.0% | |
| TCAAGGACATCAACTAATGA+GGG | - | tig0045301:1133-1152 | Msa1465560:CDS | 35.0% | |
| ACATCAACTAATGAGGGTTT+GGG | - | tig0045301:1139-1158 | Msa1465560:CDS | 35.0% | |
| GGTCAGAAAGATGAAAAGAT+CGG | + | tig0045301:583-602 | Msa1465560:intergenic | 35.0% | |
| TTGGCATACTGATGAAAAAG+TGG | - | tig0045301:619-638 | Msa1465560:intron | 35.0% | |
| CTTATCATCAAGTGAACTCA+AGG | + | tig0045301:774-793 | Msa1465560:intergenic | 35.0% | |
| ! | TGAGTTCACTTGATGATAAG+AGG | - | tig0045301:774-793 | Msa1465560:CDS | 35.0% |
| !! | ATGTTCTAGGCTCTAAATAC+TGG | - | tig0045301:822-841 | Msa1465560:CDS | 35.0% |
| !! | TGTTCTAGGCTCTAAATACT+GGG | - | tig0045301:823-842 | Msa1465560:CDS | 35.0% |
| TGCTGTGAAACAAATGGTTA+AGG | - | tig0045301:865-884 | Msa1465560:CDS | 35.0% | |
| GTGAATTTCCATACTTGGAA+AGG | - | tig0045301:897-916 | Msa1465560:CDS | 35.0% | |
| CAAAGAGTAGTTGAGAAAGT+TGG | - | tig0045301:956-975 | Msa1465560:CDS | 35.0% | |
| TTCAAAAAGAGGGAGTTCTT+AGG | - | tig0045301:981-1000 | Msa1465560:CDS | 35.0% | |
| TGTAAGTTTGTGGATGTTCA+AGG | - | tig0045301:1116-1135 | Msa1465560:CDS | 35.0% | |
| TTCAAGGACATCAACTAATG+AGG | - | tig0045301:1132-1151 | Msa1465560:CDS | 35.0% | |
| TCAAGGACATCAACTAATGA+GGG | - | tig0045301:1133-1152 | Msa1465560:CDS | 35.0% | |
| ACATCAACTAATGAGGGTTT+GGG | - | tig0045301:1139-1158 | Msa1465560:CDS | 35.0% | |
| GAAAAGATCGGAGTGTGATT+TGG | + | tig0045301:571-590 | None:intergenic | 40.0% | |
| ATGAAAAAGTGGCCAAGTTC+TGG | - | tig0045301:630-649 | Msa1465560:intron | 40.0% | |
| TGAAAAAGTGGCCAAGTTCT+GGG | - | tig0045301:631-650 | Msa1465560:intron | 40.0% | |
| TGCCATAACGATCATGCTAT+TGG | - | tig0045301:734-753 | Msa1465560:intron | 40.0% | |
| GCCATAACGATCATGCTATT+GGG | - | tig0045301:735-754 | Msa1465560:intron | 40.0% | |
| ACCCAATAGCATGATCGTTA+TGG | + | tig0045301:739-758 | Msa1465560:intergenic | 40.0% | |
| ! | GTTCACTTGATGATAAGAGG+AGG | - | tig0045301:777-796 | Msa1465560:CDS | 40.0% |
| !! | GTTCTAGGCTCTAAATACTG+GGG | - | tig0045301:824-843 | Msa1465560:CDS | 40.0% |
| ! | GCTCTAAATACTGGGGTAAA+GGG | - | tig0045301:831-850 | Msa1465560:CDS | 40.0% |
| CATTTGTTTCACAGCACATG+TGG | + | tig0045301:861-880 | Msa1465560:intergenic | 40.0% | |
| CACATGTGCTGTGAAACAAA+TGG | - | tig0045301:859-878 | Msa1465560:CDS | 40.0% | |
| TAATGAGGATGTTCAAGGTG+AGG | - | tig0045301:1074-1093 | Msa1465560:CDS | 40.0% | |
| GACATCAACTAATGAGGGTT+TGG | - | tig0045301:1138-1157 | Msa1465560:CDS | 40.0% | |
| GGAGTTTCTCATAAACAGCA+TGG | + | tig0045301:1172-1191 | Msa1465560:intergenic | 40.0% | |
| AAAGGAACAAAGTCCTGCAA+TGG | + | tig0045301:1325-1344 | Msa1465560:intergenic | 40.0% | |
| ATTGCAGGACTTTGTTCCTT+TGG | - | tig0045301:1324-1343 | Msa1465560:CDS | 40.0% | |
| !! | GGACTTTGTTCCTTTGGTTT+TGG | - | tig0045301:1330-1349 | Msa1465560:CDS | 40.0% |
| GAAAAGATCGGAGTGTGATT+TGG | + | tig0045301:571-590 | Msa1465560:intergenic | 40.0% | |
| ATGAAAAAGTGGCCAAGTTC+TGG | - | tig0045301:630-649 | Msa1465560:intron | 40.0% | |
| TGAAAAAGTGGCCAAGTTCT+GGG | - | tig0045301:631-650 | Msa1465560:intron | 40.0% | |
| TGCCATAACGATCATGCTAT+TGG | - | tig0045301:734-753 | Msa1465560:intron | 40.0% | |
| GCCATAACGATCATGCTATT+GGG | - | tig0045301:735-754 | Msa1465560:intron | 40.0% | |
| ACCCAATAGCATGATCGTTA+TGG | + | tig0045301:739-758 | Msa1465560:intergenic | 40.0% | |
| ! | GTTCACTTGATGATAAGAGG+AGG | - | tig0045301:777-796 | Msa1465560:CDS | 40.0% |
| !! | GTTCTAGGCTCTAAATACTG+GGG | - | tig0045301:824-843 | Msa1465560:CDS | 40.0% |
| ! | GCTCTAAATACTGGGGTAAA+GGG | - | tig0045301:831-850 | Msa1465560:CDS | 40.0% |
| CATTTGTTTCACAGCACATG+TGG | + | tig0045301:861-880 | Msa1465560:intergenic | 40.0% | |
| CACATGTGCTGTGAAACAAA+TGG | - | tig0045301:859-878 | Msa1465560:CDS | 40.0% | |
| TAATGAGGATGTTCAAGGTG+AGG | - | tig0045301:1074-1093 | Msa1465560:CDS | 40.0% | |
| GACATCAACTAATGAGGGTT+TGG | - | tig0045301:1138-1157 | Msa1465560:CDS | 40.0% | |
| GGAGTTTCTCATAAACAGCA+TGG | + | tig0045301:1172-1191 | Msa1465560:intergenic | 40.0% | |
| AAAGGAACAAAGTCCTGCAA+TGG | + | tig0045301:1325-1344 | Msa1465560:intergenic | 40.0% | |
| ATTGCAGGACTTTGTTCCTT+TGG | - | tig0045301:1324-1343 | Msa1465560:CDS | 40.0% | |
| !! | GGACTTTGTTCCTTTGGTTT+TGG | - | tig0045301:1330-1349 | Msa1465560:CDS | 40.0% |
| TTCTGACCTCGATGATCTCA+TGG | - | tig0045301:595-614 | Msa1465560:intron | 45.0% | |
| ACCTCGATGATCTCATGGTT+TGG | - | tig0045301:600-619 | Msa1465560:intron | 45.0% | |
| GAAAAAGTGGCCAAGTTCTG+GGG | - | tig0045301:632-651 | Msa1465560:intron | 45.0% | |
| GCAGAACTTGGGTATGTTCT+AGG | - | tig0045301:809-828 | Msa1465560:CDS | 45.0% | |
| !! | GGCTCTAAATACTGGGGTAA+AGG | - | tig0045301:830-849 | Msa1465560:CDS | 45.0% |
| GCTTGAAGCCTTTCCAAGTA+TGG | + | tig0045301:908-927 | Msa1465560:intergenic | 45.0% | |
| GCTTCAAGCTCTTGTTGATG+TGG | - | tig0045301:919-938 | Msa1465560:CDS | 45.0% | |
| ! | GTTGTGTTTTGCTCCATTGC+AGG | - | tig0045301:1309-1328 | Msa1465560:CDS | 45.0% |
| TTCTGACCTCGATGATCTCA+TGG | - | tig0045301:595-614 | Msa1465560:intron | 45.0% | |
| ACCTCGATGATCTCATGGTT+TGG | - | tig0045301:600-619 | Msa1465560:intron | 45.0% | |
| GAAAAAGTGGCCAAGTTCTG+GGG | - | tig0045301:632-651 | Msa1465560:intron | 45.0% | |
| GCAGAACTTGGGTATGTTCT+AGG | - | tig0045301:809-828 | Msa1465560:CDS | 45.0% | |
| !! | GGCTCTAAATACTGGGGTAA+AGG | - | tig0045301:830-849 | Msa1465560:CDS | 45.0% |
| GCTTGAAGCCTTTCCAAGTA+TGG | + | tig0045301:908-927 | Msa1465560:intergenic | 45.0% | |
| GCTTCAAGCTCTTGTTGATG+TGG | - | tig0045301:919-938 | Msa1465560:CDS | 45.0% | |
| ! | GTTGTGTTTTGCTCCATTGC+AGG | - | tig0045301:1309-1328 | Msa1465560:CDS | 45.0% |
| !!! | TTTTTAATAAATTATTGATT+TGG | + | tig0045301:1277-1296 | Msa1465560:intergenic | 5.0% |
| !! | AATCAATAATTTATTAAAAA+TGG | - | tig0045301:1277-1296 | Msa1465560:CDS | 5.0% |
| !!! | TTTTTAATAAATTATTGATT+TGG | + | tig0045301:1277-1296 | Msa1465560:intergenic | 5.0% |
| !! | AATCAATAATTTATTAAAAA+TGG | - | tig0045301:1277-1296 | Msa1465560:CDS | 5.0% |
| GCCAAACCATGAGATCATCG+AGG | + | tig0045301:604-623 | Msa1465560:intergenic | 50.0% | |
| GTAAGGTTCACCCCAGAACT+TGG | + | tig0045301:645-664 | Msa1465560:intergenic | 50.0% | |
| ! | CCTTGGTCTTTGCTGGTGTA+AGG | + | tig0045301:662-681 | Msa1465560:intergenic | 50.0% |
| CCTTACACCAGCAAAGACCA+AGG | - | tig0045301:659-678 | Msa1465560:intron | 50.0% | |
| ! | GTTGATGCCTTGGTCTTTGC+TGG | + | tig0045301:669-688 | Msa1465560:intergenic | 50.0% |
| AGGATCGCATGTGCAGAACT+TGG | - | tig0045301:797-816 | Msa1465560:CDS | 50.0% | |
| GGATCGCATGTGCAGAACTT+GGG | - | tig0045301:798-817 | Msa1465560:CDS | 50.0% | |
| ACTAATGAGGGTTTGGGTCG+CGG | - | tig0045301:1145-1164 | Msa1465560:CDS | 50.0% | |
| GCCAAACCATGAGATCATCG+AGG | + | tig0045301:604-623 | Msa1465560:intergenic | 50.0% | |
| GTAAGGTTCACCCCAGAACT+TGG | + | tig0045301:645-664 | Msa1465560:intergenic | 50.0% | |
| ! | CCTTGGTCTTTGCTGGTGTA+AGG | + | tig0045301:662-681 | Msa1465560:intergenic | 50.0% |
| CCTTACACCAGCAAAGACCA+AGG | - | tig0045301:659-678 | Msa1465560:intron | 50.0% | |
| ! | GTTGATGCCTTGGTCTTTGC+TGG | + | tig0045301:669-688 | Msa1465560:intergenic | 50.0% |
| AGGATCGCATGTGCAGAACT+TGG | - | tig0045301:797-816 | Msa1465560:CDS | 50.0% | |
| GGATCGCATGTGCAGAACTT+GGG | - | tig0045301:798-817 | Msa1465560:CDS | 50.0% | |
| ACTAATGAGGGTTTGGGTCG+CGG | - | tig0045301:1145-1164 | Msa1465560:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0045301 | gene | 497 | 1360 | 497 | ID=Msa1465560;Name=Msa1465560 |
| tig0045301 | mRNA | 497 | 1360 | 497 | ID=Msa1465560-mRNA-1;Parent=Msa1465560;Name=Msa1465560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|0.5|1|1|2|0|207 |
| tig0045301 | exon | 767 | 1360 | 767 | ID=Msa1465560-mRNA-1:exon:24820;Parent=Msa1465560-mRNA-1 |
| tig0045301 | exon | 497 | 526 | 497 | ID=Msa1465560-mRNA-1:exon:24819;Parent=Msa1465560-mRNA-1 |
| tig0045301 | CDS | 767 | 1360 | 767 | ID=Msa1465560-mRNA-1:cds;Parent=Msa1465560-mRNA-1 |
| tig0045301 | CDS | 497 | 526 | 497 | ID=Msa1465560-mRNA-1:cds;Parent=Msa1465560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
