Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1466910 | PNY09419.1 | 100.000 | 75 | 0 | 0 | 1 | 75 | 119 | 193 | 7.48e-47 | 159 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1466910 | sp|Q05609|CTR1_ARATH | 66.667 | 75 | 25 | 0 | 1 | 75 | 715 | 789 | 1.15e-28 | 109 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1466910 | A0A2K3P2D1 | 100.000 | 75 | 0 | 0 | 1 | 75 | 119 | 193 | 3.57e-47 | 159 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1466910 | MtrunA17_Chr5g0427651 | 100.000 | 75 | 0 | 0 | 1 | 75 | 810 | 884 | 2.57e-48 | 162 |
Msa1466910 | MtrunA17_Chr3g0132791 | 82.667 | 75 | 13 | 0 | 1 | 75 | 817 | 891 | 2.36e-39 | 137 |
Msa1466910 | MtrunA17_Chr6g0482711 | 65.753 | 73 | 25 | 0 | 2 | 74 | 823 | 895 | 2.58e-31 | 114 |
Msa1466910 | MtrunA17_Chr1g0179331 | 64.000 | 75 | 27 | 0 | 1 | 75 | 719 | 793 | 1.52e-30 | 112 |
Msa1466910 | MtrunA17_Chr1g0191171 | 64.865 | 74 | 26 | 0 | 1 | 74 | 851 | 924 | 1.24e-28 | 106 |
Msa1466910 | MtrunA17_Chr1g0171451 | 64.000 | 75 | 27 | 0 | 1 | 75 | 578 | 652 | 2.76e-28 | 105 |
Msa1466910 | MtrunA17_Chr1g0151541 | 62.162 | 74 | 28 | 0 | 1 | 74 | 825 | 898 | 3.11e-28 | 105 |
Msa1466910 | MtrunA17_Chr4g0068411 | 63.514 | 74 | 27 | 0 | 1 | 74 | 622 | 695 | 3.47e-28 | 105 |
Msa1466910 | MtrunA17_Chr2g0294351 | 62.162 | 74 | 28 | 0 | 1 | 74 | 628 | 701 | 1.04e-27 | 103 |
Msa1466910 | MtrunA17_Chr8g0392871 | 57.534 | 73 | 31 | 0 | 2 | 74 | 902 | 974 | 3.66e-26 | 99.4 |
Msa1466910 | MtrunA17_Chr5g0397931 | 54.054 | 74 | 34 | 0 | 1 | 74 | 585 | 658 | 6.93e-26 | 98.6 |
Msa1466910 | MtrunA17_Chr7g0244621 | 47.500 | 80 | 34 | 2 | 3 | 74 | 210 | 289 | 3.85e-20 | 81.6 |
Msa1466910 | MtrunA17_Chr4g0075541 | 44.595 | 74 | 41 | 0 | 2 | 75 | 252 | 325 | 9.68e-19 | 78.2 |
Msa1466910 | MtrunA17_Chr2g0325851 | 49.333 | 75 | 35 | 1 | 1 | 75 | 719 | 790 | 1.11e-18 | 78.2 |
Msa1466910 | MtrunA17_Chr4g0059181 | 47.222 | 72 | 38 | 0 | 3 | 74 | 275 | 346 | 1.78e-18 | 77.4 |
Msa1466910 | MtrunA17_Chr3g0117811 | 45.833 | 72 | 39 | 0 | 3 | 74 | 246 | 317 | 2.42e-18 | 76.6 |
Msa1466910 | MtrunA17_Chr4g0047191 | 43.836 | 73 | 41 | 0 | 3 | 75 | 212 | 284 | 2.94e-18 | 76.6 |
Msa1466910 | MtrunA17_Chr4g0047211 | 43.836 | 73 | 41 | 0 | 3 | 75 | 207 | 279 | 3.39e-18 | 76.3 |
Msa1466910 | MtrunA17_Chr4g0047201 | 45.205 | 73 | 40 | 0 | 3 | 75 | 368 | 440 | 7.43e-18 | 75.9 |
Msa1466910 | MtrunA17_Chr5g0394681 | 48.611 | 72 | 37 | 0 | 3 | 74 | 273 | 344 | 7.74e-18 | 75.5 |
Msa1466910 | MtrunA17_Chr6g0450871 | 47.222 | 72 | 38 | 0 | 3 | 74 | 258 | 329 | 1.10e-17 | 75.1 |
Msa1466910 | MtrunA17_Chr3g0090261 | 43.836 | 73 | 41 | 0 | 2 | 74 | 247 | 319 | 2.16e-17 | 74.3 |
Msa1466910 | MtrunA17_Chr1g0202101 | 43.056 | 72 | 40 | 1 | 3 | 74 | 444 | 514 | 2.23e-17 | 74.3 |
Msa1466910 | MtrunA17_Chr1g0205071 | 45.833 | 72 | 39 | 0 | 3 | 74 | 265 | 336 | 4.01e-17 | 73.6 |
Msa1466910 | MtrunA17_Chr4g0041201 | 48.000 | 75 | 36 | 1 | 1 | 75 | 709 | 780 | 4.24e-17 | 73.6 |
Msa1466910 | MtrunA17_Chr4g0059121 | 39.726 | 73 | 44 | 0 | 3 | 75 | 224 | 296 | 6.87e-17 | 72.8 |
Msa1466910 | MtrunA17_Chr4g0065211 | 42.667 | 75 | 41 | 1 | 3 | 75 | 1294 | 1368 | 1.09e-16 | 72.4 |
Msa1466910 | MtrunA17_Chr2g0310781 | 40.000 | 75 | 43 | 1 | 3 | 75 | 1018 | 1092 | 1.79e-16 | 72.0 |
Msa1466910 | MtrunA17_Chr5g0406251 | 41.667 | 72 | 42 | 0 | 3 | 74 | 456 | 527 | 1.81e-16 | 72.0 |
Msa1466910 | MtrunA17_Chr2g0282321 | 42.466 | 73 | 42 | 0 | 3 | 75 | 329 | 401 | 3.40e-16 | 70.9 |
Msa1466910 | MtrunA17_Chr3g0117731 | 39.726 | 73 | 44 | 0 | 3 | 75 | 223 | 295 | 4.39e-16 | 70.5 |
Msa1466910 | MtrunA17_Chr6g0461841 | 40.000 | 75 | 43 | 1 | 3 | 75 | 1140 | 1214 | 6.08e-16 | 70.5 |
Msa1466910 | MtrunA17_Chr2g0305141 | 40.000 | 75 | 43 | 1 | 3 | 75 | 1256 | 1330 | 1.05e-15 | 69.7 |
Msa1466910 | MtrunA17_Chr4g0072741 | 45.333 | 75 | 39 | 1 | 3 | 75 | 1008 | 1082 | 1.21e-15 | 69.7 |
Msa1466910 | MtrunA17_Chr1g0196631 | 37.333 | 75 | 45 | 1 | 3 | 75 | 1073 | 1147 | 1.42e-15 | 69.3 |
Msa1466910 | MtrunA17_Chr3g0143531 | 41.096 | 73 | 43 | 0 | 2 | 74 | 185 | 257 | 2.06e-15 | 68.2 |
Msa1466910 | MtrunA17_Chr8g0357611 | 40.000 | 75 | 43 | 1 | 3 | 75 | 1543 | 1617 | 2.09e-15 | 68.9 |
Msa1466910 | MtrunA17_Chr2g0310761 | 40.000 | 75 | 43 | 1 | 3 | 75 | 1112 | 1186 | 2.29e-15 | 68.6 |
Msa1466910 | MtrunA17_Chr1g0211611 | 41.667 | 72 | 42 | 0 | 3 | 74 | 462 | 533 | 7.57e-15 | 67.4 |
Msa1466910 | MtrunA17_Chr5g0431191 | 34.211 | 76 | 46 | 1 | 3 | 74 | 491 | 566 | 3.06e-13 | 62.8 |
Msa1466910 | MtrunA17_Chr3g0105891 | 36.842 | 76 | 44 | 1 | 3 | 74 | 488 | 563 | 3.98e-13 | 62.4 |
Msa1466910 | MtrunA17_Chr6g0449241 | 41.250 | 80 | 38 | 3 | 3 | 74 | 191 | 269 | 1.14e-12 | 60.8 |
Msa1466910 | MtrunA17_Chr3g0116981 | 38.750 | 80 | 40 | 3 | 3 | 74 | 191 | 269 | 1.46e-11 | 57.8 |
Msa1466910 | MtrunA17_Chr1g0165941 | 36.842 | 57 | 36 | 0 | 17 | 73 | 12 | 68 | 2.19e-11 | 53.9 |
Msa1466910 | MtrunA17_Chr1g0157231 | 52.083 | 48 | 22 | 1 | 3 | 49 | 306 | 353 | 3.54e-11 | 56.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1466910 | AT4G24480.1 | 89.333 | 75 | 8 | 0 | 1 | 75 | 838 | 912 | 3.02e-42 | 145 |
Msa1466910 | AT4G24480.2 | 89.333 | 75 | 8 | 0 | 1 | 75 | 833 | 907 | 3.39e-42 | 145 |
Msa1466910 | AT4G24480.3 | 89.333 | 75 | 8 | 0 | 1 | 75 | 833 | 907 | 3.48e-42 | 145 |
Msa1466910 | AT5G03730.2 | 66.667 | 75 | 25 | 0 | 1 | 75 | 715 | 789 | 1.17e-29 | 109 |
Msa1466910 | AT5G03730.1 | 66.667 | 75 | 25 | 0 | 1 | 75 | 715 | 789 | 1.17e-29 | 109 |
Msa1466910 | AT1G08720.2 | 64.865 | 74 | 26 | 0 | 1 | 74 | 831 | 904 | 5.15e-29 | 107 |
Msa1466910 | AT1G08720.1 | 64.865 | 74 | 26 | 0 | 1 | 74 | 831 | 904 | 5.91e-29 | 107 |
Msa1466910 | AT5G11850.1 | 63.514 | 74 | 27 | 0 | 1 | 74 | 771 | 844 | 5.01e-28 | 105 |
Msa1466910 | AT1G73660.1 | 64.384 | 73 | 26 | 0 | 2 | 74 | 911 | 983 | 7.71e-28 | 104 |
Msa1466910 | AT5G49470.3 | 64.865 | 74 | 26 | 0 | 1 | 74 | 653 | 726 | 1.22e-27 | 103 |
Msa1466910 | AT5G49470.1 | 64.865 | 74 | 26 | 0 | 1 | 74 | 366 | 439 | 1.29e-27 | 103 |
Msa1466910 | AT5G49470.7 | 64.865 | 74 | 26 | 0 | 1 | 74 | 526 | 599 | 1.36e-27 | 103 |
Msa1466910 | AT5G49470.2 | 64.865 | 74 | 26 | 0 | 1 | 74 | 714 | 787 | 1.47e-27 | 103 |
Msa1466910 | AT5G49470.4 | 64.865 | 74 | 26 | 0 | 1 | 74 | 627 | 700 | 1.66e-27 | 103 |
Msa1466910 | AT1G18160.2 | 63.014 | 73 | 27 | 0 | 2 | 74 | 878 | 950 | 3.18e-27 | 102 |
Msa1466910 | AT1G18160.1 | 63.014 | 73 | 27 | 0 | 2 | 74 | 878 | 950 | 3.35e-27 | 102 |
Msa1466910 | AT1G67890.4 | 60.811 | 74 | 29 | 0 | 1 | 74 | 520 | 593 | 2.64e-26 | 100 |
Msa1466910 | AT1G67890.3 | 60.811 | 74 | 29 | 0 | 1 | 74 | 648 | 721 | 3.08e-26 | 100 |
Msa1466910 | AT1G67890.2 | 60.811 | 74 | 29 | 0 | 1 | 74 | 648 | 721 | 3.08e-26 | 100 |
Msa1466910 | AT1G67890.1 | 60.811 | 74 | 29 | 0 | 1 | 74 | 648 | 721 | 3.08e-26 | 100 |
Msa1466910 | AT3G06640.2 | 58.108 | 74 | 31 | 0 | 1 | 74 | 608 | 681 | 9.69e-26 | 98.6 |
Msa1466910 | AT3G06640.3 | 58.108 | 74 | 31 | 0 | 1 | 74 | 608 | 681 | 9.69e-26 | 98.6 |
Msa1466910 | AT3G06640.1 | 58.108 | 74 | 31 | 0 | 1 | 74 | 608 | 681 | 9.70e-26 | 98.6 |
Msa1466910 | AT3G06620.1 | 58.108 | 74 | 31 | 0 | 1 | 74 | 656 | 729 | 1.37e-25 | 98.2 |
Msa1466910 | AT4G23050.1 | 56.757 | 74 | 32 | 0 | 1 | 74 | 629 | 702 | 1.56e-25 | 98.2 |
Msa1466910 | AT4G23050.2 | 56.757 | 74 | 32 | 0 | 1 | 74 | 630 | 703 | 1.59e-25 | 98.2 |
Msa1466910 | AT3G06630.2 | 58.108 | 74 | 31 | 0 | 1 | 74 | 596 | 669 | 3.33e-25 | 97.1 |
Msa1466910 | AT3G06630.1 | 58.108 | 74 | 31 | 0 | 1 | 74 | 596 | 669 | 3.52e-25 | 97.1 |
Msa1466910 | AT2G42640.1 | 49.333 | 75 | 35 | 1 | 1 | 75 | 687 | 758 | 3.34e-19 | 80.1 |
Msa1466910 | AT2G42640.4 | 49.333 | 75 | 35 | 1 | 1 | 75 | 649 | 720 | 3.37e-19 | 80.1 |
Msa1466910 | AT1G62400.1 | 46.575 | 73 | 39 | 0 | 3 | 75 | 252 | 324 | 4.47e-19 | 79.3 |
Msa1466910 | AT5G50000.1 | 47.222 | 72 | 38 | 0 | 3 | 74 | 268 | 339 | 1.29e-18 | 78.2 |
Msa1466910 | AT3G01490.1 | 48.611 | 72 | 37 | 0 | 3 | 74 | 294 | 365 | 1.66e-18 | 77.8 |
Msa1466910 | AT3G58640.1 | 48.000 | 75 | 36 | 1 | 1 | 75 | 715 | 786 | 2.77e-18 | 77.4 |
Msa1466910 | AT3G58640.2 | 48.000 | 75 | 36 | 1 | 1 | 75 | 715 | 786 | 2.77e-18 | 77.4 |
Msa1466910 | AT5G01850.1 | 45.679 | 81 | 36 | 2 | 2 | 74 | 182 | 262 | 3.77e-18 | 76.3 |
Msa1466910 | AT2G31010.1 | 49.333 | 75 | 35 | 1 | 1 | 75 | 681 | 752 | 3.78e-18 | 77.0 |
Msa1466910 | AT2G31010.2 | 49.333 | 75 | 35 | 1 | 1 | 75 | 681 | 752 | 3.78e-18 | 77.0 |
Msa1466910 | AT3G22750.1 | 48.611 | 72 | 37 | 0 | 3 | 74 | 261 | 332 | 4.46e-18 | 76.6 |
Msa1466910 | AT5G01850.2 | 45.679 | 81 | 36 | 2 | 2 | 74 | 206 | 286 | 4.89e-18 | 76.3 |
Msa1466910 | AT4G14780.1 | 44.444 | 72 | 40 | 0 | 3 | 74 | 247 | 318 | 2.02e-17 | 74.7 |
Msa1466910 | AT4G31170.7 | 42.466 | 73 | 42 | 0 | 2 | 74 | 296 | 368 | 4.10e-17 | 73.9 |
Msa1466910 | AT4G31170.6 | 42.466 | 73 | 42 | 0 | 2 | 74 | 296 | 368 | 4.10e-17 | 73.9 |
Msa1466910 | AT4G31170.5 | 42.466 | 73 | 42 | 0 | 2 | 74 | 296 | 368 | 4.10e-17 | 73.9 |
Msa1466910 | AT4G31170.1 | 42.466 | 73 | 42 | 0 | 2 | 74 | 296 | 368 | 4.10e-17 | 73.9 |
Msa1466910 | AT4G31170.2 | 42.466 | 73 | 42 | 0 | 2 | 74 | 296 | 368 | 4.10e-17 | 73.9 |
Msa1466910 | AT4G31170.3 | 42.466 | 73 | 42 | 0 | 2 | 74 | 296 | 368 | 4.10e-17 | 73.9 |
Msa1466910 | AT4G31170.8 | 42.466 | 73 | 42 | 0 | 2 | 74 | 296 | 368 | 4.10e-17 | 73.9 |
Msa1466910 | AT2G24360.1 | 42.466 | 73 | 42 | 0 | 2 | 74 | 295 | 367 | 4.89e-17 | 73.6 |
Msa1466910 | AT3G63260.1 | 45.833 | 72 | 39 | 0 | 3 | 74 | 274 | 345 | 6.10e-17 | 73.6 |
Msa1466910 | AT3G24715.1 | 41.333 | 75 | 42 | 1 | 3 | 75 | 1009 | 1083 | 1.24e-16 | 72.8 |
Msa1466910 | AT3G24715.3 | 41.333 | 75 | 42 | 1 | 3 | 75 | 1009 | 1083 | 1.24e-16 | 72.8 |
Msa1466910 | AT3G24715.2 | 41.333 | 75 | 42 | 1 | 3 | 75 | 1009 | 1083 | 1.24e-16 | 72.8 |
Msa1466910 | AT5G58950.1 | 41.096 | 73 | 43 | 0 | 3 | 75 | 375 | 447 | 2.10e-16 | 72.0 |
Msa1466910 | AT4G38470.1 | 41.667 | 72 | 42 | 0 | 3 | 74 | 451 | 522 | 2.97e-16 | 71.6 |
Msa1466910 | AT4G35780.1 | 38.889 | 72 | 44 | 0 | 3 | 74 | 453 | 524 | 8.11e-16 | 70.5 |
Msa1466910 | AT4G38470.2 | 41.667 | 72 | 42 | 0 | 3 | 74 | 451 | 522 | 8.75e-16 | 70.5 |
Msa1466910 | AT2G35050.1 | 40.000 | 75 | 43 | 1 | 3 | 75 | 1146 | 1220 | 9.71e-16 | 70.1 |
Msa1466910 | AT2G35050.2 | 40.000 | 75 | 43 | 1 | 3 | 75 | 1146 | 1220 | 9.71e-16 | 70.1 |
Msa1466910 | AT5G57610.1 | 44.000 | 75 | 40 | 1 | 3 | 75 | 954 | 1028 | 1.12e-15 | 70.1 |
Msa1466910 | AT1G79570.2 | 40.000 | 75 | 43 | 1 | 3 | 75 | 1137 | 1211 | 1.71e-15 | 69.3 |
Msa1466910 | AT1G79570.1 | 40.000 | 75 | 43 | 1 | 3 | 75 | 1137 | 1211 | 1.71e-15 | 69.3 |
Msa1466910 | AT3G46930.1 | 41.892 | 74 | 42 | 1 | 3 | 75 | 331 | 404 | 2.66e-15 | 68.9 |
Msa1466910 | AT1G04700.1 | 37.333 | 75 | 45 | 1 | 3 | 75 | 939 | 1013 | 3.40e-15 | 68.6 |
Msa1466910 | AT1G04700.2 | 37.333 | 75 | 45 | 1 | 3 | 75 | 939 | 1013 | 3.40e-15 | 68.6 |
Msa1466910 | AT1G16270.1 | 40.000 | 75 | 43 | 1 | 3 | 75 | 1036 | 1110 | 4.02e-15 | 68.6 |
Msa1466910 | AT1G16270.2 | 40.000 | 75 | 43 | 1 | 3 | 75 | 1036 | 1110 | 4.02e-15 | 68.6 |
Msa1466910 | AT1G16270.3 | 40.000 | 75 | 43 | 1 | 3 | 75 | 1036 | 1110 | 4.02e-15 | 68.6 |
Msa1466910 | AT5G49470.5 | 68.889 | 45 | 14 | 0 | 1 | 45 | 653 | 697 | 5.32e-15 | 68.2 |
Msa1466910 | AT3G46930.2 | 41.892 | 74 | 42 | 1 | 3 | 75 | 366 | 439 | 6.01e-15 | 67.8 |
Msa1466910 | AT2G17700.1 | 40.278 | 72 | 43 | 0 | 3 | 74 | 447 | 518 | 1.15e-14 | 67.0 |
Msa1466910 | AT3G46920.1 | 41.333 | 75 | 42 | 1 | 3 | 75 | 979 | 1053 | 1.75e-14 | 66.6 |
Msa1466910 | AT5G49470.6 | 68.182 | 44 | 14 | 0 | 1 | 44 | 653 | 696 | 1.97e-14 | 66.6 |
Msa1466910 | AT3G46920.2 | 41.333 | 75 | 42 | 1 | 3 | 75 | 1045 | 1119 | 2.05e-14 | 66.2 |
Msa1466910 | AT3G06630.6 | 62.222 | 45 | 17 | 0 | 1 | 45 | 512 | 556 | 3.50e-14 | 65.9 |
Msa1466910 | AT3G06630.4 | 62.222 | 45 | 17 | 0 | 1 | 45 | 596 | 640 | 3.96e-14 | 65.5 |
Msa1466910 | AT3G06630.3 | 62.222 | 45 | 17 | 0 | 1 | 45 | 596 | 640 | 3.96e-14 | 65.5 |
Msa1466910 | AT3G06630.5 | 62.222 | 45 | 17 | 0 | 1 | 45 | 596 | 640 | 3.96e-14 | 65.5 |
Msa1466910 | AT5G07140.1 | 38.158 | 76 | 43 | 1 | 3 | 74 | 485 | 560 | 2.20e-13 | 63.5 |
Msa1466910 | AT5G40540.2 | 43.750 | 80 | 36 | 4 | 3 | 74 | 115 | 193 | 1.74e-12 | 60.5 |
Msa1466910 | AT5G40540.3 | 43.750 | 80 | 36 | 4 | 3 | 74 | 94 | 172 | 1.97e-12 | 60.1 |
Msa1466910 | AT5G40540.1 | 43.750 | 80 | 36 | 4 | 3 | 74 | 191 | 269 | 2.74e-12 | 60.5 |
Msa1466910 | AT5G58520.1 | 39.474 | 76 | 42 | 1 | 3 | 74 | 506 | 581 | 4.19e-12 | 59.7 |
Msa1466910 | AT5G50180.1 | 42.500 | 80 | 37 | 4 | 3 | 74 | 185 | 263 | 1.11e-11 | 58.5 |
Msa1466910 | AT3G27560.1 | 40.000 | 80 | 39 | 3 | 3 | 74 | 191 | 269 | 1.19e-11 | 58.5 |
Msa1466910 | AT3G01490.2 | 50.000 | 54 | 24 | 1 | 3 | 53 | 294 | 347 | 1.80e-11 | 58.2 |
Msa1466910 | AT5G50000.2 | 48.000 | 50 | 26 | 0 | 3 | 52 | 268 | 317 | 7.55e-11 | 56.2 |
Find 27 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCAGTATTGGCCTCCCTTA+TGG | 0.244449 | tig0049268:+517 | Msa1466910:CDS |
TCCATAAGGGAGGCCAATAC+TGG | 0.287723 | tig0049268:-518 | Msa1466910:intergenic |
CCTCCCTTATGGAATCTTGT+TGG | 0.303802 | tig0049268:+528 | Msa1466910:CDS |
AAGTCTGATGTTTATAGTTT+TGG | 0.311358 | tig0049268:+256 | Msa1466910:CDS |
CTCCCTTATGGAATCTTGTT+GGG | 0.359987 | tig0049268:+529 | Msa1466910:CDS |
ACATCAGACTTCTCGTTTGT+AGG | 0.368339 | tig0049268:-244 | Msa1466910:intergenic |
GCCAATACTGGGGAGACATT+TGG | 0.386803 | tig0049268:-506 | Msa1466910:intergenic |
GAGACATTTGGAGGGATAGA+AGG | 0.399972 | tig0049268:-494 | Msa1466910:intergenic |
GAGCTGTCGCATTTCAGAAT+AGG | 0.418005 | tig0049268:+468 | Msa1466910:CDS |
TCCATTCCATGGTTGTTGTA+AGG | 0.427541 | tig0049268:-302 | Msa1466910:intergenic |
CAGCCCAACAAGATTCCATA+AGG | 0.462865 | tig0049268:-532 | Msa1466910:intergenic |
TCCAAATGTCTCCCCAGTAT+TGG | 0.494916 | tig0049268:+505 | Msa1466910:CDS |
CATGTGTATCCTCAGGTGGT+TGG | 0.509740 | tig0049268:+446 | Msa1466910:intron |
CCATAAGGGAGGCCAATACT+GGG | 0.514867 | tig0049268:-517 | Msa1466910:intergenic |
AATACTGGGGAGACATTTGG+AGG | 0.528815 | tig0049268:-503 | Msa1466910:intergenic |
ATGGCTCCAGAGTTTCTTCG+TGG | 0.536115 | tig0049268:+217 | Msa1466910:CDS |
GGTTCTCCACGAAGAAACTC+TGG | 0.544195 | tig0049268:-223 | Msa1466910:intergenic |
AACTCTGGAGCCATCCACTC+AGG | 0.554183 | tig0049268:-208 | Msa1466910:intergenic |
GAATGGACTTAGCCATGCCC+AGG | 0.578828 | tig0049268:+318 | Msa1466910:CDS |
AGCCCAACAAGATTCCATAA+GGG | 0.583261 | tig0049268:-531 | Msa1466910:intergenic |
ACCTTACAACAACCATGGAA+TGG | 0.583688 | tig0049268:+301 | Msa1466910:CDS |
TCAACGAGTTTACCTGGGCA+TGG | 0.589325 | tig0049268:-330 | Msa1466910:intergenic |
GCATGGCTAAGTCCATTCCA+TGG | 0.604826 | tig0049268:-313 | Msa1466910:intergenic |
TAGTGACCTTACAACAACCA+TGG | 0.641251 | tig0049268:+296 | Msa1466910:CDS |
CCAACAAGATTCCATAAGGG+AGG | 0.671201 | tig0049268:-528 | Msa1466900:intergenic |
CATAAGGGAGGCCAATACTG+GGG | 0.690145 | tig0049268:-516 | Msa1466900:intergenic |
ATACTGGGGAGACATTTGGA+GGG | 0.720295 | tig0049268:-502 | Msa1466900:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGTCTGATGTTTATAGTTT+TGG | + | tig0049268:256-275 | Msa1466910:CDS | 25.0% |
!!! | ATAGTTTTGGTGTCATCTTG+TGG | + | tig0049268:269-288 | Msa1466910:CDS | 35.0% |
!!! | TAGTTTTGGTGTCATCTTGT+GGG | + | tig0049268:270-289 | Msa1466910:CDS | 35.0% |
ATTACTCAACGAGTTTACCT+GGG | - | tig0049268:338-357 | Msa1466910:intergenic | 35.0% | |
AATTACTCAACGAGTTTACC+TGG | - | tig0049268:339-358 | Msa1466910:intergenic | 35.0% | |
! | TGCAATGTTTGAAACATGCA+AGG | - | tig0049268:374-393 | Msa1466910:intergenic | 35.0% |
TAATCTTCATGTGTATCCTC+AGG | + | tig0049268:439-458 | Msa1466910:intron | 35.0% | |
ACATCAGACTTCTCGTTTGT+AGG | - | tig0049268:247-266 | Msa1466910:intergenic | 40.0% | |
TAGTGACCTTACAACAACCA+TGG | + | tig0049268:296-315 | Msa1466910:CDS | 40.0% | |
ACCTTACAACAACCATGGAA+TGG | + | tig0049268:301-320 | Msa1466910:CDS | 40.0% | |
TCCATTCCATGGTTGTTGTA+AGG | - | tig0049268:305-324 | Msa1466910:intergenic | 40.0% | |
CTCCCTTATGGAATCTTGTT+GGG | + | tig0049268:529-548 | Msa1466910:CDS | 40.0% | |
AGCCCAACAAGATTCCATAA+GGG | - | tig0049268:534-553 | Msa1466910:intergenic | 40.0% | |
TCTTCATGTGTATCCTCAGG+TGG | + | tig0049268:442-461 | Msa1466910:intron | 45.0% | |
GAGCTGTCGCATTTCAGAAT+AGG | + | tig0049268:468-487 | Msa1466910:CDS | 45.0% | |
GAGACATTTGGAGGGATAGA+AGG | - | tig0049268:497-516 | Msa1466910:intergenic | 45.0% | |
ATACTGGGGAGACATTTGGA+GGG | - | tig0049268:505-524 | Msa1466910:intergenic | 45.0% | |
AATACTGGGGAGACATTTGG+AGG | - | tig0049268:506-525 | Msa1466910:intergenic | 45.0% | |
TCCAAATGTCTCCCCAGTAT+TGG | + | tig0049268:505-524 | Msa1466910:CDS | 45.0% | |
CCAACAAGATTCCATAAGGG+AGG | - | tig0049268:531-550 | Msa1466910:intergenic | 45.0% | |
CCTCCCTTATGGAATCTTGT+TGG | + | tig0049268:528-547 | Msa1466910:CDS | 45.0% | |
ATGGCTCCAGAGTTTCTTCG+TGG | + | tig0049268:217-236 | Msa1466910:CDS | 50.0% | |
GGTTCTCCACGAAGAAACTC+TGG | - | tig0049268:226-245 | Msa1466910:intergenic | 50.0% | |
GCATGGCTAAGTCCATTCCA+TGG | - | tig0049268:316-335 | Msa1466910:intergenic | 50.0% | |
TCAACGAGTTTACCTGGGCA+TGG | - | tig0049268:333-352 | Msa1466910:intergenic | 50.0% | |
CATGTGTATCCTCAGGTGGT+TGG | + | tig0049268:446-465 | Msa1466910:intron | 50.0% | |
GCCAATACTGGGGAGACATT+TGG | - | tig0049268:509-528 | Msa1466910:intergenic | 50.0% | |
CATAAGGGAGGCCAATACTG+GGG | - | tig0049268:519-538 | Msa1466910:intergenic | 50.0% | |
CCATAAGGGAGGCCAATACT+GGG | - | tig0049268:520-539 | Msa1466910:intergenic | 50.0% | |
TCCATAAGGGAGGCCAATAC+TGG | - | tig0049268:521-540 | Msa1466910:intergenic | 50.0% | |
!! | AACTCTGGAGCCATCCACTC+AGG | - | tig0049268:211-230 | None:intergenic | 55.0% |
! | GAATGGACTTAGCCATGCCC+AGG | + | tig0049268:318-337 | Msa1466910:CDS | 55.0% |
!! | CCCAGTATTGGCCTCCCTTA+TGG | + | tig0049268:517-536 | Msa1466910:CDS | 55.0% |
GCGACAGCTCCAACCACCTG+AGG | - | tig0049268:458-477 | Msa1466910:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0049268 | gene | 208 | 553 | 208 | ID=Msa1466910;Name=Msa1466910 |
tig0049268 | mRNA | 208 | 553 | 208 | ID=Msa1466910-mRNA-1;Parent=Msa1466910;Name=Msa1466910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0|1|1|1|2|0|75 |
tig0049268 | exon | 208 | 339 | 208 | ID=Msa1466910-mRNA-1:exon:25166;Parent=Msa1466910-mRNA-1 |
tig0049268 | exon | 461 | 553 | 461 | ID=Msa1466910-mRNA-1:exon:25167;Parent=Msa1466910-mRNA-1 |
tig0049268 | CDS | 208 | 339 | 208 | ID=Msa1466910-mRNA-1:cds;Parent=Msa1466910-mRNA-1 |
tig0049268 | CDS | 461 | 553 | 461 | ID=Msa1466910-mRNA-1:cds;Parent=Msa1466910-mRNA-1 |
Gene Sequence |
Protein sequence |