AlfalfaGEDB | Msa1466910

M. sativa cultivar zhongmu-4 / Msa1466910

KEGG: -
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466910	PNY09419.1	100.000	75	0	0	1	75	119	193	7.48e-47	159

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466910	sp\|Q05609\|CTR1_ARATH	66.667	75	25	0	1	75	715	789	1.15e-28	109

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466910	A0A2K3P2D1	100.000	75	0	0	1	75	119	193	3.57e-47	159

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466910	MtrunA17_Chr5g0427651	100.000	75	0	1	75	810	884	2.57e-48	162
Msa1466910	MtrunA17_Chr3g0132791	82.667	75	13	1	75	817	891	2.36e-39	137
Msa1466910	MtrunA17_Chr6g0482711	65.753	73	25	2	74	823	895	2.58e-31	114
Msa1466910	MtrunA17_Chr1g0179331	64.000	75	27	1	75	719	793	1.52e-30	112
Msa1466910	MtrunA17_Chr1g0191171	64.865	74	26	1	74	851	924	1.24e-28	106
Msa1466910	MtrunA17_Chr1g0171451	64.000	75	27	1	75	578	652	2.76e-28	105
Msa1466910	MtrunA17_Chr1g0151541	62.162	74	28	1	74	825	898	3.11e-28	105
Msa1466910	MtrunA17_Chr4g0068411	63.514	74	27	1	74	622	695	3.47e-28	105
Msa1466910	MtrunA17_Chr2g0294351	62.162	74	28	1	74	628	701	1.04e-27	103
Msa1466910	MtrunA17_Chr8g0392871	57.534	73	31	2	74	902	974	3.66e-26	99.4

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466910	AT4G24480.1	89.333	75	8	1	75	838	912	3.02e-42	145
Msa1466910	AT4G24480.2	89.333	75	8	1	75	833	907	3.39e-42	145
Msa1466910	AT4G24480.3	89.333	75	8	1	75	833	907	3.48e-42	145
Msa1466910	AT5G03730.2	66.667	75	25	1	75	715	789	1.17e-29	109
Msa1466910	AT5G03730.1	66.667	75	25	1	75	715	789	1.17e-29	109
Msa1466910	AT1G08720.2	64.865	74	26	1	74	831	904	5.15e-29	107
Msa1466910	AT1G08720.1	64.865	74	26	1	74	831	904	5.91e-29	107
Msa1466910	AT5G11850.1	63.514	74	27	1	74	771	844	5.01e-28	105
Msa1466910	AT1G73660.1	64.384	73	26	2	74	911	983	7.71e-28	104
Msa1466910	AT5G49470.3	64.865	74	26	1	74	653	726	1.22e-27	103

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Find 27 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCTGGAGCCATCCACTC+AGG	0.554183	tig0049268:-208	Msa1466910:intergenic
AAGTCTGATGTTTATAGTTT+TGG	0.311358	tig0049268:+256	Msa1466910:CDS
AATACTGGGGAGACATTTGG+AGG	0.528815	tig0049268:-503	Msa1466910:intergenic
ACATCAGACTTCTCGTTTGT+AGG	0.368339	tig0049268:-244	Msa1466910:intergenic
ACCTTACAACAACCATGGAA+TGG	0.583688	tig0049268:+301	Msa1466910:CDS
AGCCCAACAAGATTCCATAA+GGG	0.583261	tig0049268:-531	Msa1466910:intergenic
ATACTGGGGAGACATTTGGA+GGG	0.720295	tig0049268:-502	Msa1466900:intergenic
ATGGCTCCAGAGTTTCTTCG+TGG	0.536115	tig0049268:+217	Msa1466910:CDS
CAGCCCAACAAGATTCCATA+AGG	0.462865	tig0049268:-532	Msa1466910:intergenic
CATAAGGGAGGCCAATACTG+GGG	0.690145	tig0049268:-516	Msa1466900:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTACTCAACGAGTTTACCT+GGG	-	tig0049268:338-357	Msa1466910:intergenic	35.0%
AATTACTCAACGAGTTTACC+TGG	-	tig0049268:339-358	Msa1466910:intergenic	35.0%
TAATCTTCATGTGTATCCTC+AGG	+	tig0049268:439-458	Msa1466910:intron	35.0%
ACATCAGACTTCTCGTTTGT+AGG	-	tig0049268:247-266	Msa1466910:intergenic	40.0%
TAGTGACCTTACAACAACCA+TGG	+	tig0049268:296-315	Msa1466910:CDS	40.0%
ACCTTACAACAACCATGGAA+TGG	+	tig0049268:301-320	Msa1466910:CDS	40.0%
TCCATTCCATGGTTGTTGTA+AGG	-	tig0049268:305-324	Msa1466910:intergenic	40.0%
CTCCCTTATGGAATCTTGTT+GGG	+	tig0049268:529-548	Msa1466910:CDS	40.0%
AGCCCAACAAGATTCCATAA+GGG	-	tig0049268:534-553	Msa1466910:intergenic	40.0%
TCTTCATGTGTATCCTCAGG+TGG	+	tig0049268:442-461	Msa1466910:intron	45.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0049268	gene	208	553	208	ID=Msa1466910;Name=Msa1466910
tig0049268	mRNA	208	553	208	ID=Msa1466910-mRNA-1;Parent=Msa1466910;Name=Msa1466910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|1\|0\|1\|1\|1\|2\|0\|75
tig0049268	exon	208	339	208	ID=Msa1466910-mRNA-1:exon:25166;Parent=Msa1466910-mRNA-1
tig0049268	exon	461	553	461	ID=Msa1466910-mRNA-1:exon:25167;Parent=Msa1466910-mRNA-1
tig0049268	CDS	208	339	208	ID=Msa1466910-mRNA-1:cds;Parent=Msa1466910-mRNA-1
tig0049268	CDS	461	553	461	ID=Msa1466910-mRNA-1:cds;Parent=Msa1466910-mRNA-1

Gene Sequence	>Msa1466910 CCTGAGTGGATGGCTCCAGAGTTTCTTCGTGGAGAACCTACAAACGAGAAGTCTGATGTTTATAGTTTTGGTGTCATCTTGTGGGAACTAGTGACCTTACAACAACCATGGAATGGACTTAGCCATGCCCAGGTGGTTGGAGCTGTCGCATTTCAGAATAGGAGACCTTCTATCCCTCCAAATGTCTCCCCAGTATTGGCCTCCCTTATGGAATCTTGTTGGGCT
Protein sequence	>Msa1466910 PEWMAPEFLRGEPTNEKSDVYSFGVILWELVTLQQPWNGLSHAQVVGAVAFQNRRPSIPPNVSPVLASLMESCWA