AlfalfaGEDB | Msa1466960

M. sativa cultivar zhongmu-4 / Msa1466960

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466960	XP_003628672.1	71.186	118	4	1	1	88	87	204	1.20e-46	162

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466960	sp\|Q84M95\|PBL28_ARATH	60.331	121	15	2	1	88	100	220	1.65e-39	137

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466960	G7LFG9	71.186	118	4	1	1	88	87	204	5.71e-47	162

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466960	MtrunA17_Chr8g0364671	71.186	118	4	1	1	88	87	204	1.10e-50	162
Msa1466960	MtrunA17_Chr5g0413981	66.116	121	8	2	1	88	87	207	6.26e-44	145
Msa1466960	MtrunA17_Chr8g0373501	38.462	117	40	2	2	88	362	476	2.21e-22	89.4
Msa1466960	MtrunA17_Chr8g0369211	39.831	118	39	2	1	88	653	768	3.66e-22	88.6
Msa1466960	MtrunA17_Chr6g0485761	41.880	117	36	2	2	88	320	434	3.82e-22	88.6
Msa1466960	MtrunA17_Chr5g0403891	38.462	117	40	2	2	88	281	395	4.68e-22	88.2
Msa1466960	MtrunA17_Chr2g0291501	38.983	118	40	2	1	88	663	778	6.69e-22	87.8
Msa1466960	MtrunA17_Chr5g0413511	40.678	118	38	2	1	88	83	198	2.02e-21	86.3
Msa1466960	MtrunA17_Chr2g0320111	41.129	124	34	2	2	88	117	238	3.28e-21	85.5
Msa1466960	MtrunA17_Chr8g0359691	39.167	120	39	2	1	88	688	805	6.60e-21	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466960	AT1G24030.4	60.331	121	15	2	1	88	86	206	1.33e-42	140
Msa1466960	AT1G24030.5	60.331	121	15	2	1	88	86	206	1.44e-41	136
Msa1466960	AT1G24030.3	60.331	121	15	2	1	88	32	152	2.07e-41	137
Msa1466960	AT1G24030.2	60.331	121	15	2	1	88	86	206	1.18e-40	137
Msa1466960	AT1G24030.1	60.331	121	15	2	1	88	100	220	1.68e-40	137
Msa1466960	AT1G24030.6	58.261	115	15	2	7	88	1	115	1.04e-37	127
Msa1466960	AT1G49270.1	41.525	118	36	2	2	88	361	476	4.73e-23	91.7
Msa1466960	AT4G13190.4	40.000	120	38	2	1	88	96	213	7.28e-23	89.4
Msa1466960	AT4G13190.5	40.000	120	38	2	1	88	7	124	1.78e-22	88.2
Msa1466960	AT1G79620.2	41.525	118	37	2	1	88	662	777	2.09e-22	89.7

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Find 21 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGCCACTCTTAGTCTTTG+AGG	0.406117	tig0049447:-812	Msa1466960:intergenic
AATGGAAATGCCTGCAATTG+AGG	0.440822	tig0049447:+332	Msa1466960:CDS
ATGGAAATGCCTGCAATTGA+GGG	0.463519	tig0049447:+333	Msa1466960:CDS
ATTGGCATCTAAAAGAATAT+TGG	0.357195	tig0049447:-915	Msa1466960:intergenic
CAAAGACTAAGAGTGGCATT+AGG	0.499136	tig0049447:+815	Msa1466960:CDS
CAAATCTTGTTTCTTTGATA+GGG	0.425776	tig0049447:+406	Msa1466960:CDS
CAGTACCTTTGCTTCAAAAT+TGG	0.264156	tig0049447:-933	None:intergenic
CCAAATCTTGTTTCTTTGAT+AGG	0.189377	tig0049447:+405	Msa1466960:CDS
CCTATCAAAGAAACAAGATT+TGG	0.305917	tig0049447:-405	None:intergenic
CTATCAAAGAAACAAGATTT+GGG	0.463686	tig0049447:-404	Msa1466960:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCTATCAAAGAAACAAGATT+TGG	-	tig0049447:408-427	Msa1466960:intergenic	30.0%
TAAAGAGATATTTAGAGGGA+AGG	+	tig0049447:678-697	Msa1466960:intron	30.0%
GAAGAAGAAATCAGCATTAA+GGG	-	tig0049447:735-754	Msa1466960:intergenic	30.0%
AGAAGAAGAAATCAGCATTA+AGG	-	tig0049447:736-755	Msa1466960:intergenic	30.0%
CTATCTAATTATAGGAAACG+GGG	+	tig0049447:772-791	Msa1466960:intron	30.0%
TCAAAGAAACAAGATTTGGG+TGG	-	tig0049447:404-423	Msa1466960:intergenic	35.0%
AACCTGCAAGATCATTTGAA+TGG	+	tig0049447:483-502	Msa1466960:intron	35.0%
TACCATTCAAATGATCTTGC+AGG	-	tig0049447:488-507	Msa1466960:intergenic	35.0%
GGCATCTAAAAGAATATTGG+TGG	-	tig0049447:915-934	Msa1466960:intergenic	35.0%
AATGGAAATGCCTGCAATTG+AGG	+	tig0049447:332-351	Msa1466960:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0049447	gene	315	949	315	ID=Msa1466960;Name=Msa1466960
tig0049447	mRNA	315	949	315	ID=Msa1466960-mRNA-1;Parent=Msa1466960;Name=Msa1466960-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0\|0\|0\|1\|0\|0\|2\|0\|88
tig0049447	exon	315	427	315	ID=Msa1466960-mRNA-1:exon:25173;Parent=Msa1466960-mRNA-1
tig0049447	exon	799	949	799	ID=Msa1466960-mRNA-1:exon:25174;Parent=Msa1466960-mRNA-1
tig0049447	CDS	315	427	315	ID=Msa1466960-mRNA-1:cds;Parent=Msa1466960-mRNA-1
tig0049447	CDS	799	949	799	ID=Msa1466960-mRNA-1:cds;Parent=Msa1466960-mRNA-1

Gene Sequence	>Msa1466960 GTTGTAGCAATAAAGAAAATGGAAATGCCTGCAATTGAGGGAGAGCGTGAATTTCGTGTAGAAGTTGACATGTTGAGCAGGCTAGACCACCCAAATCTTGTTTCTTTGATAGGAAAAATGGATTGGCCTCAAAGACTAAGAGTGGCATTAGGAGCTGCAAAAGGGCTTGCTTATCTCCACTCAAGTTCTTGTGTTGGAATTCCTATTGTTCATAGAGATTTCAAATCCACCAATATTCTTTTAGATGCCAATTTTGAAGCAAAG
Protein sequence	>Msa1466960 VVAIKKMEMPAIEGEREFRVEVDMLSRLDHPNLVSLIGKMDWPQRLRVALGAAKGLAYLHSSSCVGIPIVHRDFKSTNILLDANFEAK