AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000027

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000027.t1 MTR_3g024510 98.378 370 5 1 1 369 1 370 0.0 743
MS.gene000027.t1 MTR_0565s0010 78.830 359 74 2 12 369 8 365 0.0 594
MS.gene000027.t1 MTR_8g087890 74.444 360 88 4 12 369 6 363 0.0 555
MS.gene000027.t1 MTR_3g005660 52.210 362 164 6 15 369 11 370 3.75e-127 370
MS.gene000027.t1 MTR_3g005650 51.841 353 164 5 17 369 11 357 9.05e-127 369
MS.gene000027.t1 MTR_8g087870 45.856 362 172 6 15 369 7 351 1.77e-112 332
MS.gene000027.t1 MTR_4g035353 44.167 360 192 6 15 369 8 363 1.00e-110 328
MS.gene000027.t1 MTR_3g098270 44.932 365 184 8 18 368 7 368 4.58e-108 322
MS.gene000027.t1 MTR_2g017925 45.455 363 178 8 13 368 5 354 2.69e-105 314
MS.gene000027.t1 MTR_2g017955 43.869 367 191 7 9 368 1 359 3.99e-104 311
MS.gene000027.t1 MTR_3g023220 45.161 341 173 6 29 368 25 352 3.06e-103 308
MS.gene000027.t1 MTR_2g017875 45.000 340 174 7 34 369 31 361 1.60e-100 302
MS.gene000027.t1 MTR_2g017965 43.478 368 195 9 5 368 2 360 5.46e-97 293
MS.gene000027.t1 MTR_2g017915 43.132 364 171 8 12 368 4 338 5.17e-96 290
MS.gene000027.t1 MTR_2g033930 39.071 366 212 8 6 368 5 362 1.80e-84 261
MS.gene000027.t1 MTR_2g033920 40.286 350 200 7 24 368 22 367 4.69e-84 260
MS.gene000027.t1 MTR_5g078210 38.776 343 203 6 13 352 1 339 7.47e-82 254
MS.gene000027.t1 MTR_4g122200 37.398 369 218 8 5 368 7 367 3.86e-80 250
MS.gene000027.t1 MTR_5g009100 37.349 332 203 4 39 367 48 377 6.39e-73 232
MS.gene000027.t1 MTR_7g116520 38.527 353 207 7 17 364 14 361 1.83e-72 230
MS.gene000027.t1 MTR_1g079540 40.566 318 180 6 38 350 32 345 3.91e-72 229
MS.gene000027.t1 MTR_7g116500 39.003 341 196 8 33 366 27 362 1.99e-71 228
MS.gene000027.t1 MTR_7g116570 38.889 324 189 6 30 348 27 346 2.79e-71 227
MS.gene000027.t1 MTR_6g021530 38.040 347 197 8 16 350 10 350 5.50e-70 224
MS.gene000027.t1 MTR_1g024890 38.554 332 194 7 38 364 33 359 1.70e-69 223
MS.gene000027.t1 MTR_8g079050 36.873 339 205 5 39 369 39 376 2.25e-69 222
MS.gene000027.t1 MTR_1g069175 36.620 355 216 7 6 355 4 354 3.15e-68 219
MS.gene000027.t1 MTR_3g052490 38.261 345 191 9 34 366 29 363 3.47e-68 219
MS.gene000027.t1 MTR_3g052480 36.267 375 221 10 5 369 2 368 5.06e-68 219
MS.gene000027.t1 MTR_3g435540 36.422 313 190 6 39 346 25 333 1.33e-66 215
MS.gene000027.t1 MTR_5g093090 36.011 361 215 9 15 366 6 359 1.71e-66 214
MS.gene000027.t1 MTR_7g116510 36.188 362 218 9 14 369 4 358 2.10e-66 214
MS.gene000027.t1 MTR_4g019880 36.416 346 207 8 5 345 6 343 7.24e-66 213
MS.gene000027.t1 MTR_4g108690 35.897 312 193 5 39 346 29 337 1.88e-65 212
MS.gene000027.t1 MTR_1g025760 34.421 337 214 5 8 339 49 383 6.76e-65 211
MS.gene000027.t1 MTR_2g018015 48.444 225 106 3 34 248 33 257 6.87e-65 208
MS.gene000027.t1 MTR_1g025780 33.731 335 213 6 8 339 14 342 8.23e-65 210
MS.gene000027.t1 MTR_2g033920 41.516 277 155 5 24 296 22 295 6.63e-64 206
MS.gene000027.t1 MTR_8g075230 35.328 351 212 7 8 354 7 346 4.07e-63 206
MS.gene000027.t1 MTR_1g079530 34.417 369 221 10 8 369 1 355 7.07e-63 205
MS.gene000027.t1 MTR_1g025700 35.629 334 207 6 11 339 22 352 1.18e-62 205
MS.gene000027.t1 MTR_3g021460 34.066 364 216 8 9 368 6 349 1.76e-62 204
MS.gene000027.t1 MTR_2g084585 34.627 335 212 6 16 346 9 340 5.17e-62 202
MS.gene000027.t1 MTR_7g008060 34.226 336 203 7 12 345 10 329 2.72e-61 201
MS.gene000027.t1 MTR_8g074570 35.629 334 192 8 35 355 36 359 5.77e-61 200
MS.gene000027.t1 MTR_3g114090 34.796 319 199 7 27 339 24 339 1.52e-60 199
MS.gene000027.t1 MTR_2g461580 33.151 365 222 8 8 368 3 349 1.61e-60 199
MS.gene000027.t1 MTR_5g084750 35.207 338 201 10 16 344 10 338 1.65e-60 199
MS.gene000027.t1 MTR_3g052580 34.483 348 205 9 34 369 24 360 2.43e-60 200
MS.gene000027.t1 MTR_5g078210 37.338 308 186 6 13 316 1 305 2.46e-60 197
MS.gene000027.t1 MTR_3g052580 34.483 348 205 9 34 369 25 361 2.52e-60 199
MS.gene000027.t1 MTR_1g025720 34.268 321 205 5 28 345 28 345 4.42e-60 197
MS.gene000027.t1 MTR_4g056160 35.277 343 201 9 29 361 19 350 1.59e-59 196
MS.gene000027.t1 MTR_3g464730 35.015 337 210 7 15 346 7 339 1.96e-59 196
MS.gene000027.t1 MTR_5g084770 37.812 320 183 10 35 345 26 338 3.56e-59 195
MS.gene000027.t1 MTR_4g056280 35.849 318 197 6 32 345 25 339 1.02e-58 194
MS.gene000027.t1 MTR_3g082830 35.220 318 197 7 34 346 35 348 3.52e-58 193
MS.gene000027.t1 MTR_1g025680 34.421 337 212 7 7 339 6 337 6.64e-58 195
MS.gene000027.t1 MTR_5g084790 36.391 327 193 9 28 347 25 343 9.11e-58 192
MS.gene000027.t1 MTR_2g100620 36.223 323 192 9 32 346 26 342 1.30e-57 191
MS.gene000027.t1 MTR_8g014910 33.628 339 213 8 15 346 10 343 4.55e-57 190
MS.gene000027.t1 MTR_3g114120 32.381 315 207 5 28 339 38 349 2.02e-56 189
MS.gene000027.t1 MTR_2g017925 41.079 241 128 6 130 368 23 251 2.88e-55 182
MS.gene000027.t1 MTR_0009s0250 32.754 345 204 12 16 350 10 336 6.83e-55 184
MS.gene000027.t1 MTR_5g074270 33.237 346 220 8 9 347 5 346 1.04e-54 184
MS.gene000027.t1 MTR_5g022640 33.871 310 197 6 35 339 41 347 2.79e-54 183
MS.gene000027.t1 MTR_2g017895 37.153 288 152 7 85 369 6 267 4.49e-54 179
MS.gene000027.t1 MTR_5g022630 34.405 311 195 7 35 339 41 348 6.26e-54 182
MS.gene000027.t1 MTR_2g015080 30.141 355 227 10 1 339 1 350 7.04e-54 182
MS.gene000027.t1 MTR_8g075220 29.846 325 220 5 36 353 39 362 1.58e-48 168
MS.gene000027.t1 MTR_8g075200 29.290 338 232 6 15 348 19 353 1.63e-48 169
MS.gene000027.t1 MTR_4g087985 31.765 340 212 10 12 339 15 346 2.03e-48 167
MS.gene000027.t1 MTR_8g031420 31.300 377 235 11 1 368 1 362 5.84e-48 166
MS.gene000027.t1 MTR_5g083040 31.692 325 202 9 34 345 29 346 7.51e-47 163
MS.gene000027.t1 MTR_2g044100 34.897 341 198 13 39 366 45 374 1.32e-46 164
MS.gene000027.t1 MTR_5g093090 36.644 292 170 8 15 297 6 291 1.49e-46 161
MS.gene000027.t1 MTR_8g074560 30.270 370 241 9 10 368 4 367 5.22e-46 161
MS.gene000027.t1 MTR_8g074580 30.657 411 220 12 14 367 15 417 7.14e-46 162
MS.gene000027.t1 MTR_8g031390 32.177 317 195 7 39 347 39 343 1.48e-45 160
MS.gene000027.t1 MTR_8g022790 32.239 335 211 9 39 369 39 361 2.57e-45 159
MS.gene000027.t1 MTR_8g022810 29.091 330 222 6 17 339 21 345 4.35e-45 159
MS.gene000027.t1 MTR_8g031400 31.889 323 199 8 39 352 39 349 1.18e-44 157
MS.gene000027.t1 MTR_8g031430 30.110 362 230 9 1 352 1 349 1.82e-44 157
MS.gene000027.t1 MTR_0127s0040 31.818 242 159 5 130 369 1 238 5.63e-42 147
MS.gene000027.t1 MTR_1g025910 31.132 318 196 8 42 352 41 342 6.99e-41 148
MS.gene000027.t1 MTR_8g031390 32.028 281 176 7 39 316 39 307 9.03e-39 141
MS.gene000027.t1 MTR_5g087690 28.863 343 214 9 39 368 52 377 6.84e-38 140
MS.gene000027.t1 MTR_3g011860 63.736 91 33 0 236 326 232 322 3.34e-36 134
MS.gene000027.t1 MTR_7g116870 27.792 385 240 14 1 361 1 371 5.54e-32 124
MS.gene000027.t1 MTR_8g022810 26.667 330 177 9 17 339 21 292 3.95e-30 118
MS.gene000027.t1 MTR_1g030275 28.533 368 222 13 3 345 10 361 4.62e-30 119
MS.gene000027.t1 MTR_1g030268 27.907 387 237 15 4 365 11 380 8.28e-30 118
MS.gene000027.t1 MTR_8g028160 27.473 364 214 13 39 369 38 384 8.97e-30 118
MS.gene000027.t1 MTR_6g007100 26.984 378 238 10 1 361 1 357 1.14e-29 117
MS.gene000027.t1 MTR_5g093090 37.379 206 117 7 15 211 6 208 1.75e-29 113
MS.gene000027.t1 MTR_1g060500 26.087 345 204 12 39 361 42 357 2.07e-28 114
MS.gene000027.t1 MTR_1g079590 33.333 201 125 6 18 212 11 208 4.80e-28 109
MS.gene000027.t1 MTR_7g087190 26.250 400 246 13 1 363 2 389 5.26e-28 113
MS.gene000027.t1 MTR_1g030340 27.778 342 200 10 36 345 41 367 3.66e-27 111
MS.gene000027.t1 MTR_6g007095 28.662 314 193 8 64 361 394 692 1.52e-26 111
MS.gene000027.t1 MTR_6g007095 26.343 391 243 10 1 361 1 376 1.88e-26 111
MS.gene000027.t1 MTR_6g007090 28.117 377 226 13 1 348 1 361 6.85e-26 107
MS.gene000027.t1 MTR_8g089805 26.913 379 226 12 8 351 11 373 4.24e-25 105
MS.gene000027.t1 MTR_1g030220 27.642 369 217 11 12 345 11 364 1.94e-24 103
MS.gene000027.t1 MTR_1g060490 26.480 321 189 12 39 341 39 330 2.89e-24 102
MS.gene000027.t1 MTR_1g030230 26.494 385 235 13 13 365 6 374 3.63e-24 102
MS.gene000027.t1 MTR_7g111780 26.531 343 212 11 39 361 38 360 3.78e-24 102
MS.gene000027.t1 MTR_1108s0010 29.665 209 133 4 138 345 3 198 5.61e-24 98.6
MS.gene000027.t1 MTR_4g036375 36.095 169 101 5 32 197 25 189 9.35e-24 97.4
MS.gene000027.t1 MTR_2g015630 26.757 370 232 15 1 346 1 355 5.32e-23 99.4
MS.gene000027.t1 MTR_7g033155 23.573 403 252 13 6 361 1 394 1.11e-22 98.6
MS.gene000027.t1 MTR_8g038680 26.849 365 228 11 13 348 1 355 1.29e-22 98.2
MS.gene000027.t1 MTR_7g033150 23.750 400 252 13 9 369 1 386 1.52e-22 98.2
MS.gene000027.t1 MTR_6g049220 34.463 177 65 4 32 205 25 153 1.57e-22 93.6
MS.gene000027.t1 MTR_7g033165 26.136 352 225 9 36 361 32 374 3.38e-22 97.1
MS.gene000027.t1 MTR_1g079570 34.307 137 88 2 230 366 4 138 5.96e-22 91.3
MS.gene000027.t1 MTR_5g074210 32.278 158 101 2 196 347 45 202 1.07e-21 92.4
MS.gene000027.t1 MTR_1g030268 28.247 308 191 11 4 296 11 303 1.13e-21 94.7
MS.gene000027.t1 MTR_2g079090 24.432 352 235 11 12 347 3 339 2.96e-21 94.0
MS.gene000027.t1 MTR_7g113860 24.370 357 229 9 36 361 28 374 8.52e-21 93.2
MS.gene000027.t1 MTR_2g079080 24.148 352 236 11 12 347 3 339 1.39e-20 92.0
MS.gene000027.t1 MTR_0029s0050 25.000 324 214 9 38 347 31 339 1.42e-20 92.0
MS.gene000027.t1 MTR_1g092740 25.857 321 207 11 39 349 40 339 2.33e-20 91.3
MS.gene000027.t1 MTR_7g104220 25.926 324 188 12 39 341 44 336 2.38e-20 91.3
MS.gene000027.t1 MTR_2g087292 38.462 143 80 5 17 152 12 153 2.50e-20 90.1
MS.gene000027.t1 MTR_0029s0100 25.000 324 214 9 38 347 31 339 2.66e-20 91.3
MS.gene000027.t1 MTR_1g092690 27.760 317 189 11 39 341 53 343 3.85e-20 90.9
MS.gene000027.t1 MTR_3g463960 24.925 333 216 12 39 347 46 368 8.93e-20 90.1
MS.gene000027.t1 MTR_3g463950 24.925 333 216 12 39 347 46 368 8.93e-20 90.1
MS.gene000027.t1 MTR_3g463970 24.925 333 216 12 39 347 46 368 8.93e-20 90.1
MS.gene000027.t1 MTR_3g463940 24.925 333 216 12 39 347 46 368 8.93e-20 90.1
MS.gene000027.t1 MTR_2g015580 24.789 355 231 14 15 346 28 369 1.64e-19 89.4
MS.gene000027.t1 MTR_7g113860 23.547 327 215 7 64 361 60 380 5.15e-19 87.8
MS.gene000027.t1 MTR_7g111780 27.039 233 151 6 138 361 39 261 5.35e-19 86.3
MS.gene000027.t1 MTR_4g104240 24.000 325 219 9 39 345 41 355 5.88e-19 87.8
MS.gene000027.t1 MTR_1g060520 25.220 341 188 11 17 341 16 305 1.63e-18 85.9
MS.gene000027.t1 MTR_1g030265 26.667 300 178 10 96 365 60 347 1.90e-18 85.9
MS.gene000027.t1 MTR_1g082390 22.527 364 249 8 9 348 4 358 4.17e-18 85.1
MS.gene000027.t1 MTR_2g043980 24.167 360 231 12 7 347 5 341 7.29e-18 84.3
MS.gene000027.t1 MTR_8g012540 26.984 315 199 10 13 306 1 305 1.85e-17 82.8
MS.gene000027.t1 MTR_1g092750 24.606 317 201 11 39 341 42 334 6.61e-17 81.3
MS.gene000027.t1 MTR_2g015650 27.027 333 208 13 39 347 33 354 1.34e-16 80.9
MS.gene000027.t1 MTR_7g113860 23.843 281 179 7 110 361 32 306 7.27e-16 77.8
MS.gene000027.t1 MTR_5g084880 36.449 107 68 0 191 297 7 113 1.25e-15 73.6
MS.gene000027.t1 MTR_8g089805 25.773 291 169 10 96 351 27 305 2.07e-15 76.6
MS.gene000027.t1 MTR_2g087190 48.101 79 16 1 241 319 93 146 8.31e-15 72.4
MS.gene000027.t1 MTR_3g069780 23.423 333 218 14 39 347 32 351 4.33e-14 73.2
MS.gene000027.t1 MTR_3g438030 23.494 332 219 14 39 347 32 351 8.56e-14 72.4
MS.gene000027.t1 MTR_7g033165 25.899 278 180 8 36 296 32 300 1.23e-13 71.2
MS.gene000027.t1 MTR_2g015670 25.602 332 200 13 39 347 33 340 3.42e-13 70.5
MS.gene000027.t1 MTR_4g056220 33.663 101 66 1 246 345 76 176 1.19e-12 66.6
MS.gene000027.t1 MTR_5g062890 51.613 62 28 2 31 90 22 83 3.65e-12 62.4
MS.gene000027.t1 MTR_8g062580 33.654 104 67 2 245 347 76 178 3.78e-12 65.9
MS.gene000027.t1 MTR_3g069520 24.118 340 205 13 39 347 32 349 8.23e-12 66.2
MS.gene000027.t1 MTR_4g036385 31.429 105 71 1 245 348 22 126 8.58e-12 62.8
MS.gene000027.t1 MTR_3g448360 22.356 331 225 11 39 347 31 351 1.00e-11 66.2
MS.gene000027.t1 MTR_2g015590 22.549 306 204 10 16 301 12 304 5.63e-11 63.5
MS.gene000027.t1 MTR_5g044210 62.791 43 16 0 35 77 67 109 7.07e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000027.t1 AT1G29670 70.219 366 104 4 5 369 70 431 0.0 527
MS.gene000027.t1 AT1G29670 70.219 366 104 4 5 369 2 363 0.0 526
MS.gene000027.t1 AT1G29660 67.847 367 112 4 5 369 2 364 0.0 515
MS.gene000027.t1 AT5G45670 66.852 359 117 2 13 369 4 362 0.0 513
MS.gene000027.t1 AT4G18970 70.206 339 100 1 32 369 23 361 2.31e-178 499
MS.gene000027.t1 AT4G18970 70.000 340 101 1 31 369 22 361 7.67e-177 498
MS.gene000027.t1 AT1G33811 49.462 372 178 7 6 369 1 370 1.22e-123 361
MS.gene000027.t1 AT1G71691 49.853 339 166 4 31 369 49 383 2.91e-119 350
MS.gene000027.t1 AT5G08460 46.154 377 192 8 1 369 12 385 3.99e-114 337
MS.gene000027.t1 AT1G71250 45.380 368 195 5 5 369 9 373 2.32e-110 327
MS.gene000027.t1 AT5G15720 47.110 346 173 7 30 369 23 364 2.67e-107 319
MS.gene000027.t1 AT2G19010 39.891 366 198 7 7 368 30 377 2.07e-94 287
MS.gene000027.t1 AT2G19010 41.176 340 180 7 16 351 10 333 2.15e-94 286
MS.gene000027.t1 AT2G19050 42.105 342 172 7 34 369 28 349 4.81e-92 280
MS.gene000027.t1 AT1G71691 45.423 284 151 4 86 369 3 282 1.26e-88 269
MS.gene000027.t1 AT2G19060 42.547 322 164 7 35 350 28 334 3.60e-87 267
MS.gene000027.t1 AT4G30140 45.373 335 163 8 34 366 30 346 1.81e-86 265
MS.gene000027.t1 AT1G71691 48.496 266 134 3 31 296 49 311 1.30e-83 257
MS.gene000027.t1 AT5G15720 44.291 289 152 6 87 369 48 333 1.11e-80 250
MS.gene000027.t1 AT2G19050 47.200 250 123 3 34 282 28 269 6.64e-80 246
MS.gene000027.t1 AT5G15720 45.788 273 139 6 30 296 23 292 1.52e-74 234
MS.gene000027.t1 AT3G50400 39.755 327 186 7 39 355 36 361 2.36e-74 235
MS.gene000027.t1 AT2G23540 37.249 349 211 4 8 348 19 367 4.37e-74 235
MS.gene000027.t1 AT5G37690 36.499 337 205 7 18 350 8 339 6.34e-73 231
MS.gene000027.t1 AT5G33370 37.389 337 201 7 38 369 31 362 6.74e-72 229
MS.gene000027.t1 AT4G28780 36.648 352 213 5 8 355 5 350 8.39e-71 226
MS.gene000027.t1 AT3G04290 40.625 320 179 7 33 345 23 338 1.06e-70 226
MS.gene000027.t1 AT4G10950 35.398 339 214 4 33 368 67 403 1.24e-70 226
MS.gene000027.t1 AT5G37690 35.417 336 204 8 17 350 7 331 4.49e-68 218
MS.gene000027.t1 AT4G10950 35.312 337 213 4 33 368 67 399 5.49e-68 219
MS.gene000027.t1 AT1G74460 36.859 312 190 6 39 346 25 333 8.12e-68 218
MS.gene000027.t1 AT5G18430 36.000 350 216 5 13 355 1 349 1.39e-66 215
MS.gene000027.t1 AT5G55050 38.509 322 182 9 35 345 37 353 5.92e-64 208
MS.gene000027.t1 AT5G22810 35.380 342 211 7 13 346 8 347 1.96e-63 206
MS.gene000027.t1 AT3G53100 37.658 316 190 6 35 346 27 339 3.83e-63 206
MS.gene000027.t1 AT5G41890 35.537 363 205 10 24 366 19 372 1.21e-62 205
MS.gene000027.t1 AT5G03820 35.673 342 211 7 11 346 7 345 4.83e-61 200
MS.gene000027.t1 AT1G75880 33.621 348 212 8 12 345 20 362 8.13e-61 200
MS.gene000027.t1 AT5G03820 35.673 342 211 7 11 346 35 373 1.29e-60 200
MS.gene000027.t1 AT1G75880 33.908 348 210 9 12 345 20 361 1.49e-60 199
MS.gene000027.t1 AT2G42990 36.420 324 189 9 31 345 22 337 1.84e-60 199
MS.gene000027.t1 AT2G04570 35.244 349 210 10 12 352 4 344 3.05e-60 198
MS.gene000027.t1 AT1G75890 35.494 324 193 10 36 350 46 362 3.43e-59 196
MS.gene000027.t1 AT1G75890 35.494 324 193 10 36 350 75 391 5.08e-59 196
MS.gene000027.t1 AT5G03810 34.302 344 217 8 9 346 1 341 6.17e-58 192
MS.gene000027.t1 AT1G75890 34.226 336 194 10 36 350 46 375 5.24e-57 190
MS.gene000027.t1 AT3G14820 32.448 339 216 8 15 348 10 340 8.76e-57 189
MS.gene000027.t1 AT4G26790 34.259 324 200 8 30 346 22 339 3.61e-56 187
MS.gene000027.t1 AT4G26790 34.259 324 200 8 30 346 22 339 3.61e-56 187
MS.gene000027.t1 AT5G42170 33.333 330 208 7 21 345 34 356 3.92e-56 188
MS.gene000027.t1 AT1G58430 32.070 343 220 9 13 346 9 347 9.34e-55 184
MS.gene000027.t1 AT4G16230 40.756 238 135 4 17 250 10 245 3.60e-54 179
MS.gene000027.t1 AT2G24560 32.317 328 211 8 26 346 23 346 5.23e-54 182
MS.gene000027.t1 AT1G75900 31.231 333 219 7 12 339 18 345 5.65e-54 182
MS.gene000027.t1 AT5G33370 38.491 265 154 6 37 296 30 290 2.00e-53 180
MS.gene000027.t1 AT2G30220 31.871 342 222 8 12 346 8 345 7.83e-53 179
MS.gene000027.t1 AT3G16370 33.754 317 202 7 35 346 28 341 1.29e-52 178
MS.gene000027.t1 AT2G31540 31.778 343 221 9 13 346 9 347 1.43e-52 178
MS.gene000027.t1 AT1G20135 31.515 330 208 8 14 339 5 320 1.93e-51 174
MS.gene000027.t1 AT2G30310 31.402 328 214 8 26 346 23 346 4.13e-51 174
MS.gene000027.t1 AT1G06990 32.808 317 201 8 36 345 36 347 4.91e-51 174
MS.gene000027.t1 AT1G20132 34.405 311 191 7 36 339 60 364 6.69e-51 174
MS.gene000027.t1 AT1G59406 31.884 345 214 10 13 345 1 336 7.53e-51 173
MS.gene000027.t1 AT1G59030 31.884 345 214 10 13 345 1 336 7.53e-51 173
MS.gene000027.t1 AT1G58725 31.884 345 214 10 13 345 1 336 7.53e-51 173
MS.gene000027.t1 AT5G63170 32.615 325 200 8 19 339 10 319 2.49e-50 172
MS.gene000027.t1 AT2G03980 32.827 329 200 8 36 354 42 359 2.97e-50 172
MS.gene000027.t1 AT2G03980 32.827 329 200 8 36 354 42 359 2.97e-50 172
MS.gene000027.t1 AT2G03980 32.827 329 200 8 36 354 42 359 2.97e-50 172
MS.gene000027.t1 AT2G03980 32.827 329 200 8 36 354 42 359 2.97e-50 172
MS.gene000027.t1 AT1G20120 31.307 329 215 7 26 348 67 390 3.56e-49 171
MS.gene000027.t1 AT5G45950 31.325 332 215 9 28 355 31 353 6.55e-48 166
MS.gene000027.t1 AT1G20130 31.611 329 201 8 35 347 182 502 3.43e-47 168
MS.gene000027.t1 AT1G23500 33.437 323 188 8 25 339 23 326 5.33e-47 163
MS.gene000027.t1 AT2G40250 28.834 326 219 7 33 349 32 353 6.11e-47 164
MS.gene000027.t1 AT1G20130 31.915 329 200 8 35 347 202 522 7.43e-47 167
MS.gene000027.t1 AT1G73610 32.686 309 188 7 35 339 33 325 1.45e-46 162
MS.gene000027.t1 AT1G58520 32.911 316 193 9 35 345 28 329 2.19e-46 162
MS.gene000027.t1 AT1G58525 32.911 316 193 9 35 345 28 329 2.19e-46 162
MS.gene000027.t1 AT3G43570 30.117 342 194 11 12 345 3 307 7.83e-45 157
MS.gene000027.t1 AT1G53920 30.270 370 230 10 17 369 26 384 9.43e-45 158
MS.gene000027.t1 AT5G45960 29.102 323 216 8 26 339 36 354 3.01e-43 154
MS.gene000027.t1 AT1G75920 30.294 340 216 9 17 348 7 333 5.89e-43 152
MS.gene000027.t1 AT1G75930 29.565 345 216 10 11 347 7 332 7.11e-43 152
MS.gene000027.t1 AT1G71120 28.324 346 227 8 30 367 24 356 6.65e-41 147
MS.gene000027.t1 AT2G24560 32.258 279 178 8 26 297 23 297 1.25e-39 143
MS.gene000027.t1 AT1G75920 29.014 355 216 10 17 348 2 343 4.44e-39 142
MS.gene000027.t1 AT3G43550 31.379 290 182 9 15 296 6 286 3.51e-38 139
MS.gene000027.t1 AT1G75910 30.000 340 218 8 18 348 5 333 2.22e-37 138
MS.gene000027.t1 AT3G14225 28.779 344 223 9 39 369 39 373 1.84e-36 136
MS.gene000027.t1 AT3G14225 28.613 346 225 9 39 369 39 377 9.48e-36 134
MS.gene000027.t1 AT1G53940 31.629 313 195 9 39 339 41 346 4.17e-35 132
MS.gene000027.t1 AT2G04020 35.470 234 132 6 21 243 21 246 7.09e-35 129
MS.gene000027.t1 AT5G40990 30.247 324 201 10 39 347 39 352 9.90e-35 131
MS.gene000027.t1 AT1G75920 27.811 338 196 9 17 348 7 302 4.90e-34 128
MS.gene000027.t1 AT1G75920 28.947 304 197 8 51 348 15 305 1.01e-33 127
MS.gene000027.t1 AT2G04020 35.526 228 128 6 21 237 21 240 5.77e-33 125
MS.gene000027.t1 AT1G53990 28.615 325 208 8 39 352 37 348 1.06e-32 125
MS.gene000027.t1 AT1G54030 27.812 320 205 11 39 355 54 350 3.46e-28 114
MS.gene000027.t1 AT2G31550 28.571 210 144 4 142 348 2 208 6.09e-28 109
MS.gene000027.t1 AT4G16233 41.085 129 74 2 242 369 3 130 3.33e-27 105
MS.gene000027.t1 AT1G53940 31.439 264 168 8 39 296 41 297 4.68e-27 109
MS.gene000027.t1 AT3G05180 27.778 342 202 12 36 346 35 362 6.20e-27 110
MS.gene000027.t1 AT3G62280 28.261 322 208 10 36 345 35 345 1.75e-26 108
MS.gene000027.t1 AT3G48460 27.245 323 201 11 39 339 40 350 4.92e-26 107
MS.gene000027.t1 AT4G01130 25.278 360 232 11 13 345 11 360 7.27e-26 107
MS.gene000027.t1 AT3G27950 24.194 372 246 9 13 360 6 365 1.59e-25 106
MS.gene000027.t1 AT1G54790 24.737 380 245 11 13 361 8 377 2.74e-25 105
MS.gene000027.t1 AT1G67830 27.326 344 205 11 34 345 27 357 3.53e-25 105
MS.gene000027.t1 AT1G31550 25.876 371 229 12 1 342 1 354 4.36e-25 105
MS.gene000027.t1 AT1G54020 24.606 317 218 8 39 352 35 333 4.94e-25 105
MS.gene000027.t1 AT1G56670 24.798 371 246 11 11 363 14 369 1.90e-24 103
MS.gene000027.t1 AT5G14450 25.201 373 243 10 16 361 19 382 3.53e-24 102
MS.gene000027.t1 AT1G09390 25.199 377 253 12 1 361 1 364 3.86e-24 102
MS.gene000027.t1 AT1G28600 26.230 366 227 14 1 341 1 348 8.80e-24 101
MS.gene000027.t1 AT1G28640 23.834 386 249 14 2 359 3 371 1.36e-23 101
MS.gene000027.t1 AT1G54790 24.611 386 251 11 6 361 1 376 1.62e-23 100
MS.gene000027.t1 AT1G28570 24.802 379 232 16 1 347 1 358 2.35e-23 100
MS.gene000027.t1 AT1G31550 25.135 370 230 12 1 342 1 351 3.21e-23 100
MS.gene000027.t1 AT1G28650 24.543 383 238 14 8 359 11 373 4.58e-23 99.8
MS.gene000027.t1 AT5G03610 28.182 330 202 14 39 356 45 351 1.51e-22 97.8
MS.gene000027.t1 AT2G27360 26.462 325 206 13 41 341 37 352 2.33e-22 97.8
MS.gene000027.t1 AT5G03600 26.254 339 204 12 19 341 30 338 3.14e-22 97.1
MS.gene000027.t1 AT5G03600 26.006 323 194 11 34 341 11 303 3.75e-22 96.3
MS.gene000027.t1 AT1G28610 25.068 367 230 13 1 341 1 348 4.66e-22 96.7
MS.gene000027.t1 AT3G14220 27.794 349 229 12 24 366 19 350 7.19e-22 95.9
MS.gene000027.t1 AT3G09930 27.103 321 192 14 39 341 41 337 1.27e-21 95.1
MS.gene000027.t1 AT3G09930 27.103 321 192 14 39 341 41 337 1.27e-21 95.1
MS.gene000027.t1 AT3G26430 26.765 340 208 11 36 345 30 358 1.31e-21 95.5
MS.gene000027.t1 AT1G54010 22.933 375 259 12 1 366 1 354 2.04e-21 95.1
MS.gene000027.t1 AT1G28660 25.714 350 212 13 41 359 39 371 2.10e-21 94.7
MS.gene000027.t1 AT1G54000 22.252 373 248 13 12 362 8 360 4.76e-21 94.0
MS.gene000027.t1 AT1G28660 24.658 365 223 15 8 341 9 352 1.76e-20 92.0
MS.gene000027.t1 AT3G62280 28.516 256 165 7 36 284 35 279 4.12e-20 89.7
MS.gene000027.t1 AT4G16220 52.174 92 41 2 31 120 24 114 4.14e-20 89.0
MS.gene000027.t1 AT1G28580 24.036 337 220 11 41 352 41 366 5.16e-20 90.9
MS.gene000027.t1 AT1G28590 25.225 333 211 12 41 347 40 360 5.62e-20 90.9
MS.gene000027.t1 AT1G54790 23.301 412 250 12 6 361 1 402 1.17e-19 90.1
MS.gene000027.t1 AT4G01130 25.413 303 202 9 13 301 11 303 3.06e-19 87.8
MS.gene000027.t1 AT1G28670 24.768 323 214 12 41 341 39 354 5.26e-19 87.8
MS.gene000027.t1 AT3G14210 24.848 330 214 10 39 355 38 346 9.07e-19 87.4
MS.gene000027.t1 AT1G54030 28.627 255 155 10 39 290 54 284 1.76e-17 82.8
MS.gene000027.t1 AT5G45910 27.072 362 222 16 13 341 1 353 4.37e-16 79.3
MS.gene000027.t1 AT1G56670 25.084 299 196 9 11 296 14 297 4.86e-16 78.2
MS.gene000027.t1 AT4G01130 23.827 277 179 8 96 345 3 274 4.94e-16 78.2
MS.gene000027.t1 AT1G54020 21.774 248 176 5 107 352 16 247 2.20e-14 73.2
MS.gene000027.t1 AT1G54020 21.774 248 176 5 107 352 16 247 2.20e-14 73.2
MS.gene000027.t1 AT1G54020 21.774 248 176 5 107 352 16 247 2.20e-14 73.2
MS.gene000027.t1 AT2G36325 23.810 315 207 11 39 341 49 342 7.23e-14 72.4
MS.gene000027.t1 AT1G54020 23.711 194 143 3 161 352 8 198 1.11e-13 70.5
MS.gene000027.t1 AT1G28610 29.878 164 101 6 41 194 35 194 2.19e-12 67.0

Find 89 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGGAAAATGGCTTTATT+TGG 0.146120 3.3:+16383799 MS.gene000027:CDS
ATGGGTAATGGTGGTGGTTA+TGG 0.182614 3.3:+16380206 MS.gene000027:CDS
TGAAGTGGATTATGAATTTA+TGG 0.185723 3.3:+16380187 MS.gene000027:CDS
TCAGTCCGTTGTTAAATAAT+TGG 0.211913 3.3:-16383909 None:intergenic
CCTTATGGGATTGACTTTAA+TGG 0.214241 3.3:+16380351 MS.gene000027:CDS
ATAGGAATGAGTATCTATTT+TGG 0.228224 3.3:+16385520 MS.gene000027:CDS
TGGGTAATGGTGGTGGTTAT+GGG 0.231922 3.3:+16380207 MS.gene000027:CDS
TAGCTTTGGCCAAAGAATTT+AGG 0.235549 3.3:-16380320 None:intergenic
TTGGTCTCTGGCTGTTGAAT+AGG 0.237689 3.3:-16381873 None:intergenic
AAAGCTAATTACCTTCCTTA+TGG 0.251401 3.3:+16380336 MS.gene000027:CDS
CAATAACAACCTAAATTCTT+TGG 0.263389 3.3:+16380311 MS.gene000027:CDS
TGACTCCTTTGAGTATTTCT+TGG 0.264181 3.3:-16381892 None:intergenic
AAATTTGACAGCTGAGCTTT+TGG 0.281884 3.3:+16381829 MS.gene000027:intron
CTTCAATTAATATGGCATCT+AGG 0.328844 3.3:+16380151 None:intergenic
CCACCTGGGACACTGTCTTT+TGG 0.333033 3.3:-16382528 None:intergenic
CAAGGAAAATGGCTTTATTT+GGG 0.335133 3.3:+16383800 MS.gene000027:CDS
TTATTTGGGATTGGTCAAAT+AGG 0.335977 3.3:+16383814 MS.gene000027:CDS
TTCATCTATGTAAATACTTA+TGG 0.337976 3.3:+16383976 MS.gene000027:CDS
AAGCTAATTACCTTCCTTAT+GGG 0.341128 3.3:+16380337 MS.gene000027:CDS
GACTTTAATGGTGGTCCAAC+TGG 0.345704 3.3:+16380363 MS.gene000027:CDS
TAACTATGGAGCAAGGAAAA+TGG 0.350614 3.3:+16383789 MS.gene000027:CDS
TGGTCTCTGGCTGTTGAATA+GGG 0.352173 3.3:-16381872 None:intergenic
TTTGAGTATTTCTTGGTCTC+TGG 0.354674 3.3:-16381885 None:intergenic
TGGTGGTGGTTATGGGTTTG+TGG 0.357741 3.3:+16380214 MS.gene000027:CDS
AATGAAGGGTGTTGTGGAAT+AGG 0.363284 3.3:+16385447 MS.gene000027:CDS
TTCAAACCCCATGTAGTAAT+AGG 0.364637 3.3:+16385502 MS.gene000027:CDS
TCAACTCAACAATGAGCTTT+CGG 0.384478 3.3:+16383945 MS.gene000027:CDS
TATTACTACATGGGGTTTGA+AGG 0.386243 3.3:-16385500 None:intergenic
ATGCATCTATTCCATTGGAT+TGG 0.398195 3.3:+16382597 MS.gene000027:CDS
TGCATCTATTCCATTGGATT+GGG 0.422230 3.3:+16382598 MS.gene000027:CDS
TATGGGTTTGTGGAGTAGTA+AGG 0.423823 3.3:+16380224 MS.gene000027:CDS
TTCAATTAATATGGCATCTA+GGG 0.424500 3.3:+16380152 None:intergenic
GAGGTTGGCAACACTATAAT+CGG 0.428678 3.3:+16385561 MS.gene000027:CDS
GGTGACTCTTTGGTGGATGA+TGG 0.428986 3.3:+16380285 MS.gene000027:CDS
ATAAGGAAGGTAATTAGCTT+TGG 0.431409 3.3:-16380334 None:intergenic
ATAAACAACCCATCATCATT+TGG 0.432626 3.3:+16384015 MS.gene000027:CDS
AATTATGCTTCTGCTGCTGC+TGG 0.433063 3.3:+16381914 MS.gene000027:CDS
AAAATGGCTTTATTTGGGAT+TGG 0.436591 3.3:+16383805 MS.gene000027:CDS
GGCATAAGGGTTACAAATGA+AGG 0.439702 3.3:+16385432 MS.gene000027:intron
AAATAATTACCAAATGATGA+TGG 0.442563 3.3:-16384024 None:intergenic
CAGGCATGAAATAGTTGTTA+AGG 0.445948 3.3:-16382633 None:intergenic
TCCCAGGTGGTAAATTTGCT+TGG 0.452640 3.3:+16382541 MS.gene000027:CDS
GCTAAACGATTGATGTCAAT+AGG 0.454233 3.3:-16385624 None:intergenic
AGCAAATGCATCTATTCCAT+TGG 0.461580 3.3:+16382592 MS.gene000027:CDS
GCTGGAATTAGAGAAGAAAC+TGG 0.485661 3.3:+16381932 MS.gene000027:CDS
GAAGTGGATTATGAATTTAT+GGG 0.490510 3.3:+16380188 MS.gene000027:CDS
GTGACTCTTTGGTGGATGAT+GGG 0.492465 3.3:+16380286 MS.gene000027:CDS
GATTATGAATTTATGGGTAA+TGG 0.492834 3.3:+16380194 MS.gene000027:CDS
GGTAAATTTGCTTGGAGATG+AGG 0.494258 3.3:+16382549 MS.gene000027:CDS
CTACCAAAAGACAGTGTCCC+AGG 0.504703 3.3:+16382525 MS.gene000027:CDS
TATGAATTTATGGGTAATGG+TGG 0.507358 3.3:+16380197 MS.gene000027:CDS
ATTACTACATGGGGTTTGAA+GGG 0.507716 3.3:-16385499 None:intergenic
TACTCATTCCTATTACTACA+TGG 0.509268 3.3:-16385510 None:intergenic
CTCCAAGCAAATTTACCACC+TGG 0.509858 3.3:-16382543 None:intergenic
AAGCATATGCTCAACAACTC+AGG 0.510698 3.3:+16382710 MS.gene000027:CDS
GCATTTCATCCAACTGAGGT+TGG 0.522616 3.3:+16385546 MS.gene000027:CDS
CTCATTCCTATTACTACATG+GGG 0.527908 3.3:-16385508 None:intergenic
TATGGGATTGACTTTAATGG+TGG 0.533249 3.3:+16380354 MS.gene000027:CDS
TCAACACAAGTGGTACCATC+TGG 0.537783 3.3:-16383868 None:intergenic
AATAATTACCAAATGATGAT+GGG 0.538591 3.3:-16384023 None:intergenic
ATTGATTCTTTCAACACAAG+TGG 0.538886 3.3:-16383878 None:intergenic
GAATTTATGGGTAATGGTGG+TGG 0.541068 3.3:+16380200 MS.gene000027:CDS
TGTCTACCACTAGGATATGC+AGG 0.541118 3.3:-16382652 None:intergenic
CCATTAAAGTCAATCCCATA+AGG 0.541311 3.3:-16380351 None:intergenic
CCATTGGAGAACCTTCCAGT+TGG 0.542612 3.3:-16380378 None:intergenic
ATGAAGTAGCAAGGTACTTG+AGG 0.547628 3.3:-16380258 None:intergenic
ATCATTGCTACCCAATCCAA+TGG 0.552490 3.3:-16382608 None:intergenic
GCAAACCAATTATTTAACAA+CGG 0.566624 3.3:+16383904 MS.gene000027:CDS
ATAGTGTTGCCAACCTCAGT+TGG 0.568568 3.3:-16385555 None:intergenic
ACTCATTCCTATTACTACAT+GGG 0.573415 3.3:-16385509 None:intergenic
GTTACAAATGAAGGGTGTTG+TGG 0.575255 3.3:+16385441 MS.gene000027:CDS
TTACTACATGGGGTTTGAAG+GGG 0.591767 3.3:-16385498 None:intergenic
TTAATGGTGGTCCAACTGGA+AGG 0.597104 3.3:+16380367 MS.gene000027:CDS
TAAAGTCAATCCCATAAGGA+AGG 0.599456 3.3:-16380347 None:intergenic
TCCAAGCAAATTTACCACCT+GGG 0.599727 3.3:-16382542 None:intergenic
AGCATATGCTCAACAACTCA+GGG 0.599906 3.3:+16382711 MS.gene000027:CDS
TTAGCTCAAAACAGTCCAGA+TGG 0.606226 3.3:+16383853 MS.gene000027:CDS
CCAACTGGAAGGTTCTCCAA+TGG 0.606700 3.3:+16380378 MS.gene000027:CDS
GGGAAGTCAATATTGTGAAG+TGG 0.607636 3.3:+16380172 MS.gene000027:CDS
GCATAAGGGTTACAAATGAA+GGG 0.614971 3.3:+16385433 MS.gene000027:CDS
AAAACTACTGTTGATGTCGT+TGG 0.615318 3.3:+16380402 MS.gene000027:CDS
AGAACATCAGCATACTGTTG+TGG 0.626235 3.3:-16382682 None:intergenic
AGAGACCAAGAAATACTCAA+AGG 0.628299 3.3:+16381887 MS.gene000027:CDS
GGATGCATTTCATCCAACTG+AGG 0.643283 3.3:+16385542 MS.gene000027:CDS
GGTGTAAACTGTCTACCACT+AGG 0.647660 3.3:-16382661 None:intergenic
TTGGCAACACTATAATCGGA+AGG 0.652730 3.3:+16385565 MS.gene000027:CDS
TTCATGCCTGCATATCCTAG+TGG 0.673085 3.3:+16382646 MS.gene000027:CDS
TGTGGAATAGGAAGAAACAA+TGG 0.683683 3.3:+16385459 MS.gene000027:CDS
CCAAAAGACAGTGTCCCAGG+TGG 0.761307 3.3:+16382528 MS.gene000027:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATATATAATGAGT+TGG + chr3.3:16381068-16381087 MS.gene000027:intron 10.0%
!! AAACTAAAAGATTATATAAA+AGG + chr3.3:16381176-16381195 MS.gene000027:intron 10.0%
!! AATAACTATAAAAAATGAAA+TGG - chr3.3:16385268-16385287 None:intergenic 10.0%
!! AATAATCAAAATGATTTATT+AGG - chr3.3:16380865-16380884 None:intergenic 10.0%
!! ATAAAAATTATGTCAAAAAA+AGG - chr3.3:16380523-16380542 None:intergenic 10.0%
!! ATAAAATTAACATTTCAAAA+TGG - chr3.3:16380495-16380514 None:intergenic 10.0%
!! ATAATTTGATTAATAAAAAG+AGG + chr3.3:16380563-16380582 MS.gene000027:intron 10.0%
!! ATCTTTCAAAAAAAAAAAAA+TGG - chr3.3:16380463-16380482 None:intergenic 10.0%
!!! ATAACTATAATTTTCTTTTT+TGG - chr3.3:16381734-16381753 None:intergenic 10.0%
!!! GTAGTTTTTTTTTTTTTTTA+AGG - chr3.3:16381122-16381141 None:intergenic 10.0%
!!! TAAAGTTTAATCAATTTTAA+AGG - chr3.3:16380632-16380651 None:intergenic 10.0%
!!! TTTTATACTTTAAACTTATT+TGG + chr3.3:16382913-16382932 MS.gene000027:intron 10.0%
!! AAAAATTTAAATCTTAAGTC+TGG - chr3.3:16383384-16383403 None:intergenic 15.0%
!! AAATTCAAACCTATTAAATA+AGG + chr3.3:16383302-16383321 MS.gene000027:intron 15.0%
!! ACAAAGATAAAAAGAAATTA+AGG - chr3.3:16382416-16382435 None:intergenic 15.0%
!! ATAAAAAGAGGTTTATAAAA+TGG + chr3.3:16380575-16380594 MS.gene000027:intron 15.0%
!! GACAAAAACAAAATATTATA+AGG + chr3.3:16382367-16382386 MS.gene000027:intron 15.0%
!! TAACTAATAAAAGACTATAA+TGG - chr3.3:16381150-16381169 None:intergenic 15.0%
!! TATTAATAATATACTCCATT+CGG - chr3.3:16383210-16383229 None:intergenic 15.0%
!! TTAATATAAATTACTTCGTT+TGG + chr3.3:16384148-16384167 MS.gene000027:intron 15.0%
!! TTATAACTAGAAAATGTTTA+AGG - chr3.3:16384053-16384072 None:intergenic 15.0%
!! TTTACAAAAGCAAAAAATAA+AGG - chr3.3:16383652-16383671 None:intergenic 15.0%
!!! AGAAGTTTAATTATTTTGTT+GGG + chr3.3:16383716-16383735 MS.gene000027:intron 15.0%
!!! ATAACCATAAGTTTATTTTT+TGG + chr3.3:16381611-16381630 MS.gene000027:intron 15.0%
!!! GTTTTTTCCAAAATTAAAAT+AGG - chr3.3:16383462-16383481 None:intergenic 15.0%
!!! TAGAAGTTTAATTATTTTGT+TGG + chr3.3:16383715-16383734 MS.gene000027:intron 15.0%
!!! TATTTTAGAAACTATTCATA+TGG - chr3.3:16382449-16382468 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTAAGGAG+TGG - chr3.3:16381117-16381136 None:intergenic 15.0%
!! AAATAATTACCAAATGATGA+TGG - chr3.3:16384027-16384046 None:intergenic 20.0%
!! AAATTAGAATATGTTGTACT+TGG + chr3.3:16384705-16384724 MS.gene000027:intron 20.0%
!! AATAATTACCAAATGATGAT+GGG - chr3.3:16384026-16384045 None:intergenic 20.0%
!! ACATGTATGTATAATAACAT+GGG - chr3.3:16384789-16384808 None:intergenic 20.0%
!! ACCAAAAAAAAAAGTAAAGA+AGG - chr3.3:16384891-16384910 None:intergenic 20.0%
!! TGAAAATGTGAATATCAAAT+TGG + chr3.3:16385093-16385112 MS.gene000027:intron 20.0%
!! TTATAAACTAGAACTCAAAT+AGG + chr3.3:16382972-16382991 MS.gene000027:intron 20.0%
!! TTCAATGTAATTATATGTGT+CGG - chr3.3:16382208-16382227 None:intergenic 20.0%
!! TTCACCAAAAAATAAACTTA+TGG - chr3.3:16381618-16381637 None:intergenic 20.0%
!! TTCATCTATGTAAATACTTA+TGG + chr3.3:16383976-16383995 MS.gene000027:CDS 20.0%
!!! ACTTAGATTTTGTATAACTA+TGG + chr3.3:16383775-16383794 MS.gene000027:intron 20.0%
!!! GCAAAATTTGTTTATAAATG+TGG - chr3.3:16383107-16383126 None:intergenic 20.0%
!!! TAACAAAATGTTTTATTCAC+TGG - chr3.3:16380763-16380782 None:intergenic 20.0%
!!! TAAGACAAATTTGTTTTATC+AGG - chr3.3:16383178-16383197 None:intergenic 20.0%
!!! TCCTTCTTTACTTTTTTTTT+TGG + chr3.3:16384887-16384906 MS.gene000027:intron 20.0%
!!! TGAAACTTTTGAAAAGTTTA+GGG - chr3.3:16385237-16385256 None:intergenic 20.0%
!!! TTGAAACTTTTGAAAAGTTT+AGG - chr3.3:16385238-16385257 None:intergenic 20.0%
!!! TTTGAGAATTTTCAAAAAGT+AGG + chr3.3:16384179-16384198 MS.gene000027:intron 20.0%
! AAAGTGGACAATACTTTAAA+AGG - chr3.3:16384287-16384306 None:intergenic 25.0%
! AAGTTAATGAGTTTCACAAA+AGG - chr3.3:16385040-16385059 None:intergenic 25.0%
! ACGTCATATTGACAATTATA+AGG - chr3.3:16382344-16382363 None:intergenic 25.0%
! AGTTCATTATTTCAACTTGT+AGG + chr3.3:16382468-16382487 MS.gene000027:intron 25.0%
! ATAGTGTGTTTGTTTGTATA+AGG + chr3.3:16384100-16384119 MS.gene000027:intron 25.0%
! ATTAAAATAGGAGTGGAAAT+AGG - chr3.3:16383450-16383469 None:intergenic 25.0%
! CAATAACAACCTAAATTCTT+TGG + chr3.3:16380311-16380330 MS.gene000027:CDS 25.0%
! CACATGTATGTATAATAACA+TGG - chr3.3:16384790-16384809 None:intergenic 25.0%
! CCAAATTAGAAAAGTCAATA+GGG - chr3.3:16385173-16385192 None:intergenic 25.0%
! CGTCATATTGACAATTATAA+GGG - chr3.3:16382343-16382362 None:intergenic 25.0%
! GACTTGAAATATTTGGTATA+TGG + chr3.3:16384519-16384538 MS.gene000027:intron 25.0%
! GATTATGAATTTATGGGTAA+TGG + chr3.3:16380194-16380213 MS.gene000027:CDS 25.0%
! GCAAACCAATTATTTAACAA+CGG + chr3.3:16383904-16383923 MS.gene000027:CDS 25.0%
! GTCAAGATTTAACTCTTATT+TGG - chr3.3:16385375-16385394 None:intergenic 25.0%
! GTTCATTATTTCAACTTGTA+GGG + chr3.3:16382469-16382488 MS.gene000027:intron 25.0%
! GTTCTTTAATTAAGAGCTAA+CGG + chr3.3:16381518-16381537 MS.gene000027:intron 25.0%
! TAGTCATGATTTATGAAACA+CGG + chr3.3:16382130-16382149 MS.gene000027:intron 25.0%
! TGCAATTTAAATCCTAAGTT+TGG - chr3.3:16383345-16383364 None:intergenic 25.0%
! TTATAATTGTCAATATGACG+TGG + chr3.3:16382343-16382362 MS.gene000027:intron 25.0%
! TTCCAAAATTAAAATAGGAG+TGG - chr3.3:16383457-16383476 None:intergenic 25.0%
! TTCTTTAATTAAGAGCTAAC+GGG + chr3.3:16381519-16381538 MS.gene000027:intron 25.0%
! TTTATCATGCACAAACAAAA+TGG + chr3.3:16382877-16382896 MS.gene000027:intron 25.0%
! TTTCTCTATGCTAAATTTAG+TGG + chr3.3:16381978-16381997 MS.gene000027:intron 25.0%
!! AACTAACTTTGAGAAATTTG+TGG - chr3.3:16383563-16383582 None:intergenic 25.0%
!! AATTTGTTTATAAATGTGGC+TGG - chr3.3:16383103-16383122 None:intergenic 25.0%
!! ACCTTGATTCAATTGATTTA+GGG + chr3.3:16384759-16384778 MS.gene000027:intron 25.0%
!! ATAGGAATGAGTATCTATTT+TGG + chr3.3:16385520-16385539 MS.gene000027:CDS 25.0%
!! CAAATGCATATTTTCTTAGT+CGG + chr3.3:16380916-16380935 MS.gene000027:intron 25.0%
!! CAATGAGATTAAACTTCTTT+TGG - chr3.3:16383041-16383060 None:intergenic 25.0%
!! GTTTGTATAAGGAAGTTTTA+CGG + chr3.3:16384111-16384130 MS.gene000027:intron 25.0%
!! TAAACAAATTTTGCTCTATC+AGG + chr3.3:16383113-16383132 MS.gene000027:intron 25.0%
!! TAGGAATGAGTATCTATTTT+GGG + chr3.3:16385521-16385540 MS.gene000027:CDS 25.0%
!! TATTTACAGTCTGCTTTAAA+AGG + chr3.3:16380662-16380681 MS.gene000027:intron 25.0%
!! TTTGTATAAGGAAGTTTTAC+GGG + chr3.3:16384112-16384131 MS.gene000027:intron 25.0%
!!! ATTTACAGTCTGCTTTAAAA+GGG + chr3.3:16380663-16380682 MS.gene000027:intron 25.0%
!!! GAAGTGGATTATGAATTTAT+GGG + chr3.3:16380188-16380207 MS.gene000027:CDS 25.0%
!!! GATGTGACTTTTTAATTCAA+TGG - chr3.3:16382841-16382860 None:intergenic 25.0%
!!! TGAAGTGGATTATGAATTTA+TGG + chr3.3:16380187-16380206 MS.gene000027:CDS 25.0%
!!! TTCCACTCCTATTTTAATTT+TGG + chr3.3:16383452-16383471 MS.gene000027:intron 25.0%
!!! TTGTTTCTGTCTTAATTTTC+AGG + chr3.3:16385411-16385430 MS.gene000027:intron 25.0%
AAAGCTAATTACCTTCCTTA+TGG + chr3.3:16380336-16380355 MS.gene000027:CDS 30.0%
AAGCTAATTACCTTCCTTAT+GGG + chr3.3:16380337-16380356 MS.gene000027:CDS 30.0%
AATTCCATGTGCTTGAAATT+GGG - chr3.3:16381449-16381468 None:intergenic 30.0%
ACCCTAAATCAATTGAATCA+AGG - chr3.3:16384763-16384782 None:intergenic 30.0%
ACTCATTCCTATTACTACAT+GGG - chr3.3:16385512-16385531 None:intergenic 30.0%
ATAAACAACCCATCATCATT+TGG + chr3.3:16384015-16384034 MS.gene000027:CDS 30.0%
ATAGAGTGAAGTGTATAAGT+CGG + chr3.3:16381309-16381328 MS.gene000027:intron 30.0%
CGTAATTTATGATAGTCATC+TGG + chr3.3:16381487-16381506 MS.gene000027:intron 30.0%
GCCAAATTAGAAAAGTCAAT+AGG - chr3.3:16385174-16385193 None:intergenic 30.0%
GGAACATAACAACATTTAGA+TGG - chr3.3:16384243-16384262 None:intergenic 30.0%
GTCTTATAAATGTAACCGAA+TGG + chr3.3:16383192-16383211 MS.gene000027:intron 30.0%
TACTCATTCCTATTACTACA+TGG - chr3.3:16385513-16385532 None:intergenic 30.0%
TCACAAAAGGACAAACTATT+CGG - chr3.3:16385027-16385046 None:intergenic 30.0%
TCAGTCCGTTGTTAAATAAT+TGG - chr3.3:16383912-16383931 None:intergenic 30.0%
TGTAAATGACAAAACTGTGA+GGG - chr3.3:16384327-16384346 None:intergenic 30.0%
TGTGTGATTCATCAAATCAA+CGG - chr3.3:16385145-16385164 None:intergenic 30.0%
TTGTAAATGACAAAACTGTG+AGG - chr3.3:16384328-16384347 None:intergenic 30.0%
TTGTGGATTTGAGAAATCAT+TGG - chr3.3:16383546-16383565 None:intergenic 30.0%
TTTGGTGAACATAATTCAGT+TGG + chr3.3:16381629-16381648 MS.gene000027:intron 30.0%
! ATAAGGAAGGTAATTAGCTT+TGG - chr3.3:16380337-16380356 None:intergenic 30.0%
! ATCAACAGTAGTTTTTCCAT+TGG - chr3.3:16380397-16380416 None:intergenic 30.0%
! ATTGATTCTTTCAACACAAG+TGG - chr3.3:16383881-16383900 None:intergenic 30.0%
! GACCTTGATTCAATTGATTT+AGG + chr3.3:16384758-16384777 MS.gene000027:intron 30.0%
! TATGAATTTATGGGTAATGG+TGG + chr3.3:16380197-16380216 MS.gene000027:CDS 30.0%
! TTGTATAAGGAAGTTTTACG+GGG + chr3.3:16384113-16384132 MS.gene000027:intron 30.0%
! TTTTGTATAACTATGGAGCA+AGG + chr3.3:16383782-16383801 MS.gene000027:CDS 30.0%
! TTTTTACCCAAGATTTGTGA+TGG - chr3.3:16381582-16381601 None:intergenic 30.0%
!! AAAATGGCTTTATTTGGGAT+TGG + chr3.3:16383805-16383824 MS.gene000027:CDS 30.0%
!! CAAGGAAAATGGCTTTATTT+GGG + chr3.3:16383800-16383819 MS.gene000027:CDS 30.0%
!! CCATCTTCTTTTGAGAAAAA+AGG - chr3.3:16380605-16380624 None:intergenic 30.0%
!! CTGTTTTGAGCTAATTCATT+TGG - chr3.3:16383847-16383866 None:intergenic 30.0%
!! GTCTTAATTTTCAGGCATAA+GGG + chr3.3:16385419-16385438 MS.gene000027:intron 30.0%
!! TGTCTTAATTTTCAGGCATA+AGG + chr3.3:16385418-16385437 MS.gene000027:intron 30.0%
!! TTATTTGGGATTGGTCAAAT+AGG + chr3.3:16383814-16383833 MS.gene000027:CDS 30.0%
!! TTTTCCTTCTAAAAGTAGAC+TGG + chr3.3:16380991-16381010 MS.gene000027:intron 30.0%
!!! CCCTATTGACTTTTCTAATT+TGG + chr3.3:16385170-16385189 MS.gene000027:intron 30.0%
!!! CCTTTTTTCTCAAAAGAAGA+TGG + chr3.3:16380602-16380621 MS.gene000027:intron 30.0%
!!! TTTTTTTGGTGTTAACCCTT+CGG + chr3.3:16384901-16384920 MS.gene000027:intron 30.0%
AAAACTACTGTTGATGTCGT+TGG + chr3.3:16380402-16380421 MS.gene000027:CDS 35.0%
AAATAGGAGTGGAAATAGGT+TGG - chr3.3:16383446-16383465 None:intergenic 35.0%
AGAGACCAAGAAATACTCAA+AGG + chr3.3:16381887-16381906 MS.gene000027:CDS 35.0%
AGATCTTGTAAAGCCTAACT+CGG + chr3.3:16383419-16383438 MS.gene000027:intron 35.0%
AGCAAATGCATCTATTCCAT+TGG + chr3.3:16382592-16382611 MS.gene000027:CDS 35.0%
AGTTGTTTGGGTAAGTGTAA+AGG - chr3.3:16384662-16384681 None:intergenic 35.0%
ATACATGTGTTAGCGTCTTA+AGG + chr3.3:16384801-16384820 MS.gene000027:intron 35.0%
ATGCATCTATTCCATTGGAT+TGG + chr3.3:16382597-16382616 MS.gene000027:CDS 35.0%
ATTACTACATGGGGTTTGAA+GGG - chr3.3:16385502-16385521 None:intergenic 35.0%
ATTCCATGTGCTTGAAATTG+GGG - chr3.3:16381448-16381467 None:intergenic 35.0%
CAATCATGACCTATGAAACA+CGG - chr3.3:16382298-16382317 None:intergenic 35.0%
CAATTCCATGTGCTTGAAAT+TGG - chr3.3:16381450-16381469 None:intergenic 35.0%
CACAAAAGGACAAACTATTC+GGG - chr3.3:16385026-16385045 None:intergenic 35.0%
CACTATACAAGGCTAATTCA+TGG - chr3.3:16384619-16384638 None:intergenic 35.0%
CAGGCATGAAATAGTTGTTA+AGG - chr3.3:16382636-16382655 None:intergenic 35.0%
CCATTAAAGTCAATCCCATA+AGG - chr3.3:16380354-16380373 None:intergenic 35.0%
CCTTGTATAGTGAGAGATTA+GGG + chr3.3:16384627-16384646 MS.gene000027:intron 35.0%
CTCATTCCTATTACTACATG+GGG - chr3.3:16385511-16385530 None:intergenic 35.0%
CTTAAAGACTCACATTGCTT+AGG - chr3.3:16384412-16384431 None:intergenic 35.0%
GAGACAAAATAAACAGTCGT+TGG - chr3.3:16381387-16381406 None:intergenic 35.0%
GCATAAGGGTTACAAATGAA+GGG + chr3.3:16385433-16385452 MS.gene000027:CDS 35.0%
GCTAAACGATTGATGTCAAT+AGG - chr3.3:16385627-16385646 None:intergenic 35.0%
TAAAGTCAATCCCATAAGGA+AGG - chr3.3:16380350-16380369 None:intergenic 35.0%
TAACTATGGAGCAAGGAAAA+TGG + chr3.3:16383789-16383808 MS.gene000027:CDS 35.0%
TAGTTCAAAGTTCAGAAGTG+AGG + chr3.3:16384948-16384967 MS.gene000027:intron 35.0%
TATTACTACATGGGGTTTGA+AGG - chr3.3:16385503-16385522 None:intergenic 35.0%
TCAACTCAACAATGAGCTTT+CGG + chr3.3:16383945-16383964 MS.gene000027:CDS 35.0%
TCACCAAAAATGAAGTAGCA+AGG - chr3.3:16380270-16380289 None:intergenic 35.0%
TCATGTTGAATTGAGAAGTG+TGG + chr3.3:16384354-16384373 MS.gene000027:intron 35.0%
TCCTAAATACCTTGCGTATT+CGG - chr3.3:16384571-16384590 None:intergenic 35.0%
TGACTCCTTTGAGTATTTCT+TGG - chr3.3:16381895-16381914 None:intergenic 35.0%
TGCATCTATTCCATTGGATT+GGG + chr3.3:16382598-16382617 MS.gene000027:CDS 35.0%
TGTCATATCAAGCTTTCGAA+AGG + chr3.3:16383277-16383296 MS.gene000027:intron 35.0%
TGTGGAATAGGAAGAAACAA+TGG + chr3.3:16385459-16385478 MS.gene000027:CDS 35.0%
TGTTTATAAATGTGGCTGGA+GGG - chr3.3:16383099-16383118 None:intergenic 35.0%
TTCAAACCCCATGTAGTAAT+AGG + chr3.3:16385502-16385521 MS.gene000027:CDS 35.0%
TTCCAATCACAATCATGTTG+TGG + chr3.3:16381554-16381573 MS.gene000027:intron 35.0%
TTGTTTATAAATGTGGCTGG+AGG - chr3.3:16383100-16383119 None:intergenic 35.0%
TTTGAGTATTTCTTGGTCTC+TGG - chr3.3:16381888-16381907 None:intergenic 35.0%
! AAATTTGACAGCTGAGCTTT+TGG + chr3.3:16381829-16381848 MS.gene000027:intron 35.0%
! AATTTGACAGCTGAGCTTTT+GGG + chr3.3:16381830-16381849 MS.gene000027:intron 35.0%
! CAAATATTTCAAGTCCTTGC+GGG - chr3.3:16384514-16384533 None:intergenic 35.0%
! CATGTTGAATTGAGAAGTGT+GGG + chr3.3:16384355-16384374 MS.gene000027:intron 35.0%
! CCAAATATTTCAAGTCCTTG+CGG - chr3.3:16384515-16384534 None:intergenic 35.0%
! CCTTATGGGATTGACTTTAA+TGG + chr3.3:16380351-16380370 MS.gene000027:CDS 35.0%
! GCTAATTCATGGTCTTTTCT+AGG - chr3.3:16384608-16384627 None:intergenic 35.0%
! GTGGACAATACTTTAAAAGG+TGG - chr3.3:16384284-16384303 None:intergenic 35.0%
! TAATTAAGAGCTAACGGGTA+AGG + chr3.3:16381524-16381543 MS.gene000027:intron 35.0%
! TATGGGATTGACTTTAATGG+TGG + chr3.3:16380354-16380373 MS.gene000027:CDS 35.0%
!! CTGGCATAGCCTTATTTAAT+AGG - chr3.3:16383314-16383333 None:intergenic 35.0%
!! GCAAGGAAAATGGCTTTATT+TGG + chr3.3:16383799-16383818 MS.gene000027:CDS 35.0%
!! GTACCTTGCTACTTCATTTT+TGG + chr3.3:16380264-16380283 MS.gene000027:CDS 35.0%
!! TAGCTTTGGCCAAAGAATTT+AGG - chr3.3:16380323-16380342 None:intergenic 35.0%
!! TTTCTTATGTGCTTTTTGCG+TGG - chr3.3:16383618-16383637 None:intergenic 35.0%
!!! CTTCATTTTTGGTGACTCTT+TGG + chr3.3:16380275-16380294 MS.gene000027:CDS 35.0%
!!! GGAGATCGTATTAGTTTTAG+TGG + chr3.3:16382490-16382509 MS.gene000027:CDS 35.0%
AAGCATATGCTCAACAACTC+AGG + chr3.3:16382710-16382729 MS.gene000027:CDS 40.0%
AGAACATCAGCATACTGTTG+TGG - chr3.3:16382685-16382704 None:intergenic 40.0%
AGCATATGCTCAACAACTCA+GGG + chr3.3:16382711-16382730 MS.gene000027:CDS 40.0%
AGCCACAACATGATTGTGAT+TGG - chr3.3:16381559-16381578 None:intergenic 40.0%
ATCATTGCTACCCAATCCAA+TGG - chr3.3:16382611-16382630 None:intergenic 40.0%
ATTTGTTTCAGACCGTGTCA+AGG - chr3.3:16384852-16384871 None:intergenic 40.0%
CCAGACTACATACCAAACTT+AGG + chr3.3:16383330-16383349 MS.gene000027:intron 40.0%
CCCTAATCTCTCACTATACA+AGG - chr3.3:16384630-16384649 None:intergenic 40.0%
CCGCAAGGACTTGAAATATT+TGG + chr3.3:16384512-16384531 MS.gene000027:intron 40.0%
CCTAAGTTTGGTATGTAGTC+TGG - chr3.3:16383333-16383352 None:intergenic 40.0%
GAGGTTGGCAACACTATAAT+CGG + chr3.3:16385561-16385580 MS.gene000027:CDS 40.0%
GCCTTGTATAGTGAGAGATT+AGG + chr3.3:16384626-16384645 MS.gene000027:intron 40.0%
GCTGGAATTAGAGAAGAAAC+TGG + chr3.3:16381932-16381951 MS.gene000027:CDS 40.0%
GCTTATAGATGCTTTGCATG+TGG + chr3.3:16383494-16383513 MS.gene000027:intron 40.0%
GGCATAAGGGTTACAAATGA+AGG + chr3.3:16385432-16385451 MS.gene000027:intron 40.0%
GGGAAGTCAATATTGTGAAG+TGG + chr3.3:16380172-16380191 MS.gene000027:CDS 40.0%
GGTCAATTGACGACTCTATT+GGG - chr3.3:16384493-16384512 None:intergenic 40.0%
TATGGGTTTGTGGAGTAGTA+AGG + chr3.3:16380224-16380243 MS.gene000027:CDS 40.0%
TCCAAGCAAATTTACCACCT+GGG - chr3.3:16382545-16382564 None:intergenic 40.0%
TCGCTAAAGGACAGTTGTTT+GGG - chr3.3:16384674-16384693 None:intergenic 40.0%
TGTCTGTATCCGTGTTTCAT+AGG + chr3.3:16382286-16382305 MS.gene000027:intron 40.0%
TTACTACATGGGGTTTGAAG+GGG - chr3.3:16385501-16385520 None:intergenic 40.0%
TTAGCTCAAAACAGTCCAGA+TGG + chr3.3:16383853-16383872 MS.gene000027:CDS 40.0%
TTGGCAACACTATAATCGGA+AGG + chr3.3:16385565-16385584 MS.gene000027:CDS 40.0%
! ATGAAGTAGCAAGGTACTTG+AGG - chr3.3:16380261-16380280 None:intergenic 40.0%
! CTACTAAGGGGTAACTGTTT+TGG - chr3.3:16384440-16384459 None:intergenic 40.0%
! GAATTTATGGGTAATGGTGG+TGG + chr3.3:16380200-16380219 MS.gene000027:CDS 40.0%
! GGTAAATTTGCTTGGAGATG+AGG + chr3.3:16382549-16382568 MS.gene000027:CDS 40.0%
! TCCGAATACGCAAGGTATTT+AGG + chr3.3:16384567-16384586 MS.gene000027:intron 40.0%
! TTACTCACATGTGTCGCTAA+AGG - chr3.3:16384687-16384706 None:intergenic 40.0%
!! AATGAAGGGTGTTGTGGAAT+AGG + chr3.3:16385447-16385466 MS.gene000027:CDS 40.0%
!! CATGCCAGTCTACTTTTAGA+AGG - chr3.3:16380998-16381017 None:intergenic 40.0%
!! GTTACAAATGAAGGGTGTTG+TGG + chr3.3:16385441-16385460 MS.gene000027:CDS 40.0%
!!! CATTTTTGGTGACTCTTTGG+TGG + chr3.3:16380278-16380297 MS.gene000027:CDS 40.0%
AAGAATGCTCCGAATACGCA+AGG + chr3.3:16384559-16384578 MS.gene000027:intron 45.0%
AAGGTGGTGTCTCATACTTG+AGG - chr3.3:16384268-16384287 None:intergenic 45.0%
AATTATGCTTCTGCTGCTGC+TGG + chr3.3:16381914-16381933 MS.gene000027:CDS 45.0%
ACACGGCACATGTTCAACAT+CGG - chr3.3:16382179-16382198 None:intergenic 45.0%
ACACTCTCAACGACTCAAAG+TGG - chr3.3:16384303-16384322 None:intergenic 45.0%
AGGTGGTGTCTCATACTTGA+GGG - chr3.3:16384267-16384286 None:intergenic 45.0%
ATAGTGTTGCCAACCTCAGT+TGG - chr3.3:16385558-16385577 None:intergenic 45.0%
CATGTGCTTGAAATTGGGGT+AGG - chr3.3:16381444-16381463 None:intergenic 45.0%
CTACCCCAATTTCAAGCACA+TGG + chr3.3:16381442-16381461 MS.gene000027:intron 45.0%
CTCCAAGCAAATTTACCACC+TGG - chr3.3:16382546-16382565 None:intergenic 45.0%
GACCTCAGTCAATATGCTTC+TGG + chr3.3:16381707-16381726 MS.gene000027:intron 45.0%
GACTTTAATGGTGGTCCAAC+TGG + chr3.3:16380363-16380382 MS.gene000027:CDS 45.0%
GCATTTCATCCAACTGAGGT+TGG + chr3.3:16385546-16385565 MS.gene000027:CDS 45.0%
GGATGCATTTCATCCAACTG+AGG + chr3.3:16385542-16385561 MS.gene000027:CDS 45.0%
GGGTCAATTGACGACTCTAT+TGG - chr3.3:16384494-16384513 None:intergenic 45.0%
GGTGTAAACTGTCTACCACT+AGG - chr3.3:16382664-16382683 None:intergenic 45.0%
GTCGCTAAAGGACAGTTGTT+TGG - chr3.3:16384675-16384694 None:intergenic 45.0%
GTGGCTCCATCACAAATCTT+GGG + chr3.3:16381573-16381592 MS.gene000027:intron 45.0%
TATGAAACACGGACACTCCT+CGG + chr3.3:16382141-16382160 MS.gene000027:intron 45.0%
TCAACACAAGTGGTACCATC+TGG - chr3.3:16383871-16383890 None:intergenic 45.0%
TGACTGAATGGACCTTGACA+CGG + chr3.3:16384837-16384856 MS.gene000027:intron 45.0%
TGGTCTCTGGCTGTTGAATA+GGG - chr3.3:16381875-16381894 None:intergenic 45.0%
TGTCTACCACTAGGATATGC+AGG - chr3.3:16382655-16382674 None:intergenic 45.0%
TGTGGCTCCATCACAAATCT+TGG + chr3.3:16381572-16381591 MS.gene000027:intron 45.0%
TTAACCCTTCGGTGGTTCAA+GGG + chr3.3:16384912-16384931 MS.gene000027:intron 45.0%
TTAATGGTGGTCCAACTGGA+AGG + chr3.3:16380367-16380386 MS.gene000027:CDS 45.0%
TTCATGCCTGCATATCCTAG+TGG + chr3.3:16382646-16382665 MS.gene000027:CDS 45.0%
TTCGGTGGTTCAAGGGAAAA+GGG + chr3.3:16384919-16384938 MS.gene000027:intron 45.0%
TTGACGACTCTATTGGGAAG+CGG - chr3.3:16384487-16384506 None:intergenic 45.0%
TTGGTCTCTGGCTGTTGAAT+AGG - chr3.3:16381876-16381895 None:intergenic 45.0%
! GAAATAGGTTGGACCGAGTT+AGG - chr3.3:16383435-16383454 None:intergenic 45.0%
! GTCCAGAAGCATATTGACTG+AGG - chr3.3:16381712-16381731 None:intergenic 45.0%
! GTGACTCTTTGGTGGATGAT+GGG + chr3.3:16380286-16380305 MS.gene000027:CDS 45.0%
! TCCCAGGTGGTAAATTTGCT+TGG + chr3.3:16382541-16382560 MS.gene000027:CDS 45.0%
! TTTTCCCTTGAACCACCGAA+GGG - chr3.3:16384919-16384938 None:intergenic 45.0%
!! ATATGTGTCGGTGTCGAACA+CGG - chr3.3:16382196-16382215 None:intergenic 45.0%
!! ATGGGTAATGGTGGTGGTTA+TGG + chr3.3:16380206-16380225 MS.gene000027:CDS 45.0%
!! TGGGTAATGGTGGTGGTTAT+GGG + chr3.3:16380207-16380226 MS.gene000027:CDS 45.0%
!!! AGCTGAGCTTTTGGGATTTG+AGG + chr3.3:16381838-16381857 MS.gene000027:intron 45.0%
!!! GCTGAGCTTTTGGGATTTGA+GGG + chr3.3:16381839-16381858 MS.gene000027:intron 45.0%
!!! TTTTGGTGTTAACCCTTCGG+TGG + chr3.3:16384904-16384923 MS.gene000027:intron 45.0%
!!! ATGAATTTTTAAAAATTATA+AGG - chr3.3:16385205-16385224 None:intergenic 5.0%
!!! TAAGATTTAAATTTTTATAT+AGG + chr3.3:16383388-16383407 MS.gene000027:intron 5.0%
ACGGATACAGACACAGACAC+CGG - chr3.3:16382279-16382298 None:intergenic 50.0%
CACGGCACATGTTCAACATC+GGG - chr3.3:16382178-16382197 None:intergenic 50.0%
CCAACTGGAAGGTTCTCCAA+TGG + chr3.3:16380378-16380397 MS.gene000027:CDS 50.0%
CCATTGGAGAACCTTCCAGT+TGG - chr3.3:16380381-16380400 None:intergenic 50.0%
CTACCAAAAGACAGTGTCCC+AGG + chr3.3:16382525-16382544 MS.gene000027:CDS 50.0%
CTTCGGTGGTTCAAGGGAAA+AGG + chr3.3:16384918-16384937 MS.gene000027:intron 50.0%
GGGTAGGCACACAACTAATG+TGG - chr3.3:16381428-16381447 None:intergenic 50.0%
GGTCCATTCAGTCAACAGAG+CGG - chr3.3:16384831-16384850 None:intergenic 50.0%
GGTTCAAGGGAAAAGGGCTT+TGG + chr3.3:16384925-16384944 MS.gene000027:intron 50.0%
GTCCATTCAGTCAACAGAGC+GGG - chr3.3:16384830-16384849 None:intergenic 50.0%
GTCGATGTCTGTGTCGTATC+CGG + chr3.3:16382257-16382276 MS.gene000027:intron 50.0%
GTTAACCCTTCGGTGGTTCA+AGG + chr3.3:16384911-16384930 MS.gene000027:intron 50.0%
TGACGACTCTATTGGGAAGC+GGG - chr3.3:16384486-16384505 None:intergenic 50.0%
TGGTGTCTCATACTTGAGGG+TGG - chr3.3:16384264-16384283 None:intergenic 50.0%
! AACCCGCTCTGTTGACTGAA+TGG + chr3.3:16384825-16384844 MS.gene000027:intron 50.0%
! CTTTTCCCTTGAACCACCGA+AGG - chr3.3:16384920-16384939 None:intergenic 50.0%
! GGTGACTCTTTGGTGGATGA+TGG + chr3.3:16380285-16380304 MS.gene000027:CDS 50.0%
!! TGGTGGTGGTTATGGGTTTG+TGG + chr3.3:16380214-16380233 MS.gene000027:CDS 50.0%
ACACGGACACTCCTCGGATT+AGG + chr3.3:16382147-16382166 MS.gene000027:intron 55.0%
CCAAAAGACAGTGTCCCAGG+TGG + chr3.3:16382528-16382547 MS.gene000027:CDS 55.0%
GAGTCGTCAATTGACCCGCA+AGG + chr3.3:16384497-16384516 MS.gene000027:intron 55.0%
! CCACCTGGGACACTGTCTTT+TGG - chr3.3:16382531-16382550 None:intergenic 55.0%
ATCGGGACACGCCTAATCCG+AGG - chr3.3:16382161-16382180 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 16380162 16385656 16380162 ID=MS.gene000027
chr3.3 mRNA 16380162 16385656 16380162 ID=MS.gene000027.t1;Parent=MS.gene000027
chr3.3 exon 16380162 16380423 16380162 ID=MS.gene000027.t1.exon1;Parent=MS.gene000027.t1
chr3.3 CDS 16380162 16380423 16380162 ID=cds.MS.gene000027.t1;Parent=MS.gene000027.t1
chr3.3 exon 16381840 16381964 16381840 ID=MS.gene000027.t1.exon2;Parent=MS.gene000027.t1
chr3.3 CDS 16381840 16381964 16381840 ID=cds.MS.gene000027.t1;Parent=MS.gene000027.t1
chr3.3 exon 16382490 16382732 16382490 ID=MS.gene000027.t1.exon3;Parent=MS.gene000027.t1
chr3.3 CDS 16382490 16382732 16382490 ID=cds.MS.gene000027.t1;Parent=MS.gene000027.t1
chr3.3 exon 16383781 16384036 16383781 ID=MS.gene000027.t1.exon4;Parent=MS.gene000027.t1
chr3.3 CDS 16383781 16384036 16383781 ID=cds.MS.gene000027.t1;Parent=MS.gene000027.t1
chr3.3 exon 16385433 16385656 16385433 ID=MS.gene000027.t1.exon5;Parent=MS.gene000027.t1
chr3.3 CDS 16385433 16385656 16385433 ID=cds.MS.gene000027.t1;Parent=MS.gene000027.t1
Gene Sequence

>MS.gene000027

ATGGCATCTAGGGAAGTCAATATTGTGAAGTGGATTATGAATTTATGGGTAATGGTGGTGGTTATGGGTTTGTGGAGTAGTAAGGTTGAAGCTGATCCTCAAGTACCTTGCTACTTCATTTTTGGTGACTCTTTGGTGGATGATGGGAACAATAACAACCTAAATTCTTTGGCCAAAGCTAATTACCTTCCTTATGGGATTGACTTTAATGGTGGTCCAACTGGAAGGTTCTCCAATGGAAAAACTACTGTTGATGTCGTTGGTGAGTTTGCTTAAGTCAAATTAGAGTGATTGATGTCCATTTTTTTTTTTTTGAAAGATGATTGATGTCCATTTTGAAATGTTAATTTTATATTTACCTTTTTTTGACATAATTTTTATATATACTTAAGAAGTTTATAATAATTTGATTAATAAAAAGAGGTTTATAAAATGGTTTTCCTTTTTTCTCAAAAGAAGATGGTGTTCCTTTAAAATTGATTAAACTTTATATACATTCTTATTTACAGTCTGCTTTAAAAGGGACATGCAAATATTTAAAATAAAATTATATAGCTTTGTCTTGCTATTTTAGAGTTTAAGTATCATCATTACAGCTCCAGTGAATAAAACATTTTGTTACTTGAAATGTTGTCAATTAACTTTATTATAGTCTATGAATGTATCAAAGTTAAAAAGAAAATATTTCTTGTGTGTTTTTCCTAATAAATCATTTTGATTATTAAATATGTTTTTCATTAGTTAGTTTAATTTTCAAATGCATATTTTCTTAGTCGGTTTAGATTATAAAATAAAAGACAATTAAATAGATTTTTGCAATTTCAATACGTTTTCCTTCTAAAAGTAGACTGGCATGCATTACAATCTATCATTTATCAATCATATCTATTGACTAGTAATTTTTTCAAAATAAATATATAATGAGTTGGATTAGAATATTAAGCTACATGAACCACTCCTTAAAAAAAAAAAAAAACTACAAGAACCATTATAGTCTTTTATTAGTTAGCAATGAAACTAAAAGATTATATAAAAGGTTTTGCTAACAAATGTCTTAATAGCATTATTAAAAAAAATTATCTTAAAAATAACTATATAATTTAAACAATATCTTAAAAACACTCGTAAGCATTTTTCTTAAATAAATATAGAGTGAAGTGTATAAGTCGGTGAACAATAAAGCATTACTCATTGCTCAAAAAAAAAAAAATAAAGCATTACTCCAACGACTGTTTATTTTGTCTCTATCTTGTTTCAATTACTCCACATTAGTTGTGTGCCTACCCCAATTTCAAGCACATGGAATTGTTTGACTTCATTTAGTTCGTAATTTATGATAGTCATCTGGTATATGTCGTTCTTTAATTAAGAGCTAACGGGTAAGGTTTTAATTTCCAATCACAATCATGTTGTGGCTCCATCACAAATCTTGGGTAAAAAATTACTAATATAACCATAAGTTTATTTTTTGGTGAACATAATTCAGTTGGCAGAGACTTGCGATATGCAGAGAATGATGTTCAAATTCTGAATTTATTACTTTTTGACCTCAGTCAATATGCTTCTGGACCAAAAAAGAAAATTATAGTTATATTACATTGTATATAAAATTGACTCTAATTTAATAGTTATGCTACTTTATATATACATGCATAAATCTTGTGTTGAAATTTGACAGCTGAGCTTTTGGGATTTGAGGGCTACATATCTCCCTATTCAACAGCCAGAGACCAAGAAATACTCAAAGGAGTCAATTATGCTTCTGCTGCTGCTGGAATTAGAGAAGAAACTGGACAACAACTAGTACTATTTGTTTTTTCTCTATGCTAAATTTAGTGGCACATAATCTATCAAGTTAAATAGTATACTATTTTTGCTCTAGTAAAATGAGTAAATATTGCTTTTCAATTCATACTTCAAATAATTATTTATATAATCTTGAGAAAGCAAAAAAGAAATATTATTTTTTAGTCATGATTTATGAAACACGGACACTCCTCGGATTAGGCGTGTCCCGATGTTGAACATGTGCCGTGTTCGACACCGACACATATAATTACATTGAATTATGTGATTTTCTTAAATTATTAGCTGTGTCGATGTCTGTGTCGTATCCGGTGTCTGTGTCTGTATCCGTGTTTCATAGGTCATGATTGATCATCTTGTATAAAAATACAGCCCTTATAATTGTCAATATGACGTGGTGACAAAAACAAAATATTATAAGGACTAAAATCAACATTTGATTTTACCTTAATTTCTTTTTATCTTTGTTTGATAATAACCATATGAATAGTTTCTAAAATAGTTCATTATTTCAACTTGTAGGGAGATCGTATTAGTTTTAGTGGACAAGTACAAAACTACCAAAAGACAGTGTCCCAGGTGGTAAATTTGCTTGGAGATGAGGATACAGCTTCAAATTATCTTAGCAAATGCATCTATTCCATTGGATTGGGTAGCAATGATTACCTTAACAACTATTTCATGCCTGCATATCCTAGTGGTAGACAGTTTACACCACAACAGTATGCTGATGTTCTTATTCAAGCATATGCTCAACAACTCAGGGTAATTATACTGTGTTTACATTTTCACTCTTTCATCTTGTTTAGCTAGTTTTCATTGTATTACACGACTTTGTCTAACATGCACAAATAAAATGCTTTTGAATCACCATTGAATTAAAAAGTCACATCATATTATATGACTTTGTTTATCATGCACAAACAAAATGGTCTTGCTAATAAATTTTATACTTTAAACTTATTTGGCTACATTATTATTTTTGCACATATTTAATTGCATTATTATAAACTAGAACTCAAATAGGATATCATATATAGACAAATTCTCTAAATTGTAATATTCAACATCCAAAAGAAGTTTAATCTCATTGTTCTATTAGTTCGTCAATCTATTTAAACATGTACTCCCTCCAGCCACATTTATAAACAAATTTTGCTCTATCAGGTTCATTGAACAGCTGATGTATCTTAGCAAATTTAGTGAACCTGATAAAACAAATTTGTCTTATAAATGTAACCGAATGGAGTATATTATTAATACATATTTAAATACATTCAGAAGAAAAAAAACTTTTAAACAACTAACATGTCATATCAAGCTTTCGAAAGGTCAAATTCAAACCTATTAAATAAGGCTATGCCAGACTACATACCAAACTTAGGATTTAAATTGCATTTGACAGACTACATGCCAGACTTAAGATTTAAATTTTTATATAGGTGAAGCTTAGATCTTGTAAAGCCTAACTCGGTCCAACCTATTTCCACTCCTATTTTAATTTTGGAAAAAACTCAGAAGCATTTGCTTATAGATGCTTTGCATGTGGTTCTTTACGAAAAATACTCATAACTACCAATGATTTCTCAAATCCACAAATTTCTCAAAGTTAGTTACAAGCATAAAAAATAAATTTCATGTGAAGAACCACGCAAAAAGCACATAAGAAAATACATTTTGTCCTTTATTTTTTGCTTTTGTAAATACAAGATTGATAATCTTACTAATGAAAAAAAAATTATGCTATTAGAAGTTTAATTATTTTGTTGGGTTAAAAAAAAATAGAAGTTTAATTGTTGTGTTTGTGACTTAGATTTTGTATAACTATGGAGCAAGGAAAATGGCTTTATTTGGGATTGGTCAAATAGGTTGCAGTCCAAATGAATTAGCTCAAAACAGTCCAGATGGTACCACTTGTGTTGAAAGAATCAATTCTGCAAACCAATTATTTAACAACGGACTGAAATCTCTTGTTAATCAACTCAACAATGAGCTTTCGGATGCAAGATTCATCTATGTAAATACTTATGGTATCTTTCAAGACATCATAAACAACCCATCATCATTTGGTAATTATTTTTGCCTTAAACATTTTCTAGTTATAATTTTTTTTTCTTTCTGTAATTTTCATGATAGTGTGTTTGTTTGTATAAGGAAGTTTTACGGGGTAATTCAATTCTTTAATATAAATTACTTCGTTTGGAAATTAGTTTTGAGAATTTTCAAAAAGTAGGAATTTTATGAAATAATTTTTAAAGCTAAATTTTAAATACCATCTAAATGTTGTTATGTTCCACCCTCAAGTATGAGACACCACCTTTTAAAGTATTGTCCACTTTGAGTCGTTGAGAGTGTGCCCTCACAGTTTTGTCATTTACAAAAAGTGTCATGTTGAATTGAGAAGTGTGGGTGTTGTATGCAAACTACATTTGATCTTGATTCCTAAGCAATGTGAGTCTTTAAGTTGTACCAAAACAGTTACCCCTTAGTAGAGACTAAAGGGAGATTTTATAGGCCCGCTTCCCAATAGAGTCGTCAATTGACCCGCAAGGACTTGAAATATTTGGTATATGGTGTAGATGACTATGACTAAGAATGCTCCGAATACGCAAGGTATTTAGGATAGACAACAATGTACCTAGAAAAGACCATGAATTAGCCTTGTATAGTGAGAGATTAGGGTTTATGAGTCCTTTACACTTACCCAAACAACTGTCCTTTAGCGACACATGTGAGTAAATTAGAATATGTTGTACTTGGATATGATATAACAGCTCAAATCAGCTATGCGACCTTGATTCAATTGATTTAGGGTTAGCCCATGTTATTATACATACATGTGTTAGCGTCTTAAGGCAACCCGCTCTGTTGACTGAATGGACCTTGACACGGTCTGAAACAAATGCAATAATTTGAAATTCCTTCTTTACTTTTTTTTTTGGTGTTAACCCTTCGGTGGTTCAAGGGAAAAGGGCTTTGGTAGTTCAAAGTTCAGAAGTGAGGTAAATATAGTTTGATAAAGAATTGTTTCATTCAGTAATCGAATTCGAATTCTCCCGAATAGTTTGTCCTTTTGTGAAACTCATTAACTTGAGCTCAATTATTTGACATTCATTCTTTACTTTTGAAAATGTGAATATCAAATTGGTTTTTATATATGTTTTAATTTAAATTCCGTTGATTTGATGAATCACACATAAGTCCCTATTGACTTTTCTAATTTGGCAGCTTGATCCTTATAATTTTTAAAAATTCATCTAATTTAACCCTAAACTTTTCAAAAGTTTCAAAATTTAACCATTTCATTTTTTATAGTTATTTTTTTTCAAATACTTTTAAAATTTAGAAATAAAGAGAATTCAATTGAAAGCATTTGAATTTAATAGAATTTTTAATTACATTGTCCAAATAAGAGTTAAATCTTGACAAAATTTTTGCTCATTTTGTTTCTGTCTTAATTTTCAGGCATAAGGGTTACAAATGAAGGGTGTTGTGGAATAGGAAGAAACAATGGTCAAATTACATGTTTGCCCCTTCAAACCCCATGTAGTAATAGGAATGAGTATCTATTTTGGGATGCATTTCATCCAACTGAGGTTGGCAACACTATAATCGGAAGGAGAGCTTACAATGCTCAATCTGAATCAGATGCTTATCCTATTGACATCAATCGTTTAGCTCAAATATGA
Protein sequence

>MS.gene000027.t1

MASREVNIVKWIMNLWVMVVVMGLWSSKVEADPQVPCYFIFGDSLVDDGNNNNLNSLAKANYLPYGIDFNGGPTGRFSNGKTTVDVVAELLGFEGYISPYSTARDQEILKGVNYASAAAGIREETGQQLGDRISFSGQVQNYQKTVSQVVNLLGDEDTASNYLSKCIYSIGLGSNDYLNNYFMPAYPSGRQFTPQQYADVLIQAYAQQLRILYNYGARKMALFGIGQIGCSPNELAQNSPDGTTCVERINSANQLFNNGLKSLVNQLNNELSDARFIYVNTYGIFQDIINNPSSFGIRVTNEGCCGIGRNNGQITCLPLQTPCSNRNEYLFWDAFHPTEVGNTIIGRRAYNAQSESDAYPIDINRLAQI