Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000132.t1 | XP_003610687.1 | 98.4 | 702 | 10 | 1 | 1 | 701 | 1 | 702 | 3.30E-256 | 894.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000132.t1 | B9DHT4 | 81.6 | 694 | 127 | 1 | 8 | 701 | 15 | 707 | 1.1e-188 | 661.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000132.t1 | G7K2B1 | 98.4 | 702 | 10 | 1 | 1 | 701 | 1 | 702 | 2.4e-256 | 894.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene000132.t1 | TR | TRAF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene042713 | MS.gene000132 | PPI |
MS.gene78758 | MS.gene000132 | PPI |
MS.gene053945 | MS.gene000132 | PPI |
MS.gene045983 | MS.gene000132 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000132.t1 | MTR_5g005940 | 98.291 | 702 | 11 | 1 | 1 | 701 | 1 | 702 | 0.0 | 1407 |
MS.gene000132.t1 | MTR_1g104870 | 86.291 | 693 | 92 | 2 | 7 | 698 | 12 | 702 | 0.0 | 1187 |
MS.gene000132.t1 | MTR_5g005940 | 97.973 | 592 | 11 | 1 | 1 | 591 | 1 | 592 | 0.0 | 1178 |
MS.gene000132.t1 | MTR_7g094910 | 67.228 | 653 | 209 | 2 | 42 | 693 | 36 | 684 | 0.0 | 860 |
MS.gene000132.t1 | MTR_7g094900 | 68.780 | 615 | 187 | 2 | 80 | 693 | 93 | 703 | 0.0 | 851 |
MS.gene000132.t1 | MTR_7g094910 | 69.153 | 590 | 177 | 2 | 42 | 630 | 36 | 621 | 0.0 | 795 |
MS.gene000132.t1 | MTR_1g012360 | 27.098 | 417 | 259 | 14 | 133 | 522 | 104 | 502 | 2.13e-18 | 89.7 |
MS.gene000132.t1 | MTR_7g094490 | 31.875 | 160 | 95 | 2 | 513 | 660 | 187 | 344 | 2.06e-16 | 82.4 |
MS.gene000132.t1 | MTR_1g018180 | 26.400 | 250 | 176 | 3 | 291 | 532 | 74 | 323 | 5.28e-16 | 80.5 |
MS.gene000132.t1 | MTR_3g466220 | 29.245 | 212 | 145 | 3 | 165 | 373 | 521 | 730 | 1.99e-14 | 77.8 |
MS.gene000132.t1 | MTR_3g466220 | 26.866 | 268 | 182 | 6 | 236 | 490 | 508 | 774 | 2.71e-11 | 67.4 |
MS.gene000132.t1 | MTR_3g466220 | 29.245 | 212 | 145 | 3 | 165 | 373 | 500 | 709 | 2.33e-14 | 77.4 |
MS.gene000132.t1 | MTR_3g466220 | 26.866 | 268 | 182 | 6 | 236 | 490 | 487 | 753 | 2.82e-11 | 67.4 |
MS.gene000132.t1 | MTR_1g072650 | 30.435 | 161 | 94 | 3 | 515 | 660 | 191 | 348 | 6.36e-14 | 74.7 |
MS.gene000132.t1 | MTR_5g087500 | 30.818 | 159 | 89 | 5 | 520 | 659 | 183 | 339 | 2.08e-13 | 72.8 |
MS.gene000132.t1 | MTR_5g087500 | 30.818 | 159 | 89 | 5 | 520 | 659 | 183 | 339 | 2.34e-13 | 72.4 |
MS.gene000132.t1 | MTR_5g087500 | 30.818 | 159 | 89 | 5 | 520 | 659 | 183 | 339 | 2.90e-13 | 72.8 |
MS.gene000132.t1 | MTR_7g007780 | 29.073 | 313 | 189 | 9 | 68 | 370 | 447 | 736 | 1.32e-12 | 71.6 |
MS.gene000132.t1 | MTR_3g069000 | 30.435 | 138 | 84 | 1 | 535 | 660 | 58 | 195 | 1.37e-12 | 69.3 |
MS.gene000132.t1 | MTR_4g121435 | 21.975 | 314 | 219 | 10 | 68 | 375 | 140 | 433 | 5.20e-12 | 69.3 |
MS.gene000132.t1 | MTR_4g485520 | 27.778 | 216 | 154 | 2 | 192 | 407 | 371 | 584 | 5.81e-12 | 69.3 |
MS.gene000132.t1 | MTR_4g485520 | 27.778 | 216 | 154 | 2 | 192 | 407 | 203 | 416 | 6.12e-12 | 68.9 |
MS.gene000132.t1 | MTR_4g131510 | 24.756 | 307 | 206 | 9 | 67 | 368 | 59 | 345 | 6.22e-12 | 68.6 |
MS.gene000132.t1 | MTR_4g063800 | 30.769 | 195 | 131 | 4 | 194 | 387 | 353 | 544 | 1.37e-11 | 68.2 |
MS.gene000132.t1 | MTR_7g086500 | 27.528 | 178 | 102 | 5 | 505 | 659 | 153 | 326 | 2.07e-11 | 67.0 |
MS.gene000132.t1 | MTR_2g034900 | 24.430 | 307 | 205 | 10 | 68 | 368 | 137 | 422 | 2.43e-11 | 67.4 |
MS.gene000132.t1 | MTR_7g086500 | 27.528 | 178 | 102 | 5 | 505 | 659 | 153 | 326 | 2.72e-11 | 66.2 |
MS.gene000132.t1 | MTR_7g097020 | 28.241 | 216 | 152 | 3 | 187 | 402 | 475 | 687 | 3.86e-11 | 67.0 |
MS.gene000132.t1 | MTR_1g094215 | 31.282 | 195 | 132 | 2 | 193 | 387 | 344 | 536 | 9.20e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000132.t1 | AT5G19330 | 79.683 | 694 | 140 | 1 | 8 | 701 | 15 | 707 | 0.0 | 1096 |
MS.gene000132.t1 | AT5G19330 | 73.844 | 627 | 113 | 5 | 8 | 633 | 15 | 591 | 0.0 | 870 |
MS.gene000132.t1 | AT5G13060 | 59.058 | 701 | 278 | 4 | 1 | 694 | 29 | 727 | 0.0 | 830 |
MS.gene000132.t1 | AT3G06190 | 31.013 | 158 | 94 | 2 | 518 | 660 | 182 | 339 | 1.54e-16 | 82.4 |
MS.gene000132.t1 | AT3G06190 | 31.013 | 158 | 94 | 2 | 518 | 660 | 182 | 339 | 2.62e-16 | 82.0 |
MS.gene000132.t1 | AT5G19000 | 30.380 | 158 | 95 | 2 | 518 | 660 | 183 | 340 | 5.80e-15 | 78.2 |
MS.gene000132.t1 | AT5G19000 | 30.380 | 158 | 95 | 2 | 518 | 660 | 183 | 340 | 5.80e-15 | 78.2 |
MS.gene000132.t1 | AT3G03740 | 31.293 | 147 | 84 | 2 | 529 | 659 | 210 | 355 | 1.44e-14 | 77.4 |
MS.gene000132.t1 | AT3G43700 | 30.114 | 176 | 103 | 4 | 535 | 692 | 205 | 378 | 8.26e-14 | 74.7 |
MS.gene000132.t1 | AT4G02150 | 24.183 | 306 | 207 | 8 | 68 | 368 | 139 | 424 | 1.07e-13 | 74.7 |
MS.gene000132.t1 | AT4G02150 | 22.590 | 332 | 225 | 10 | 179 | 488 | 106 | 427 | 3.80e-11 | 66.6 |
MS.gene000132.t1 | AT3G43700 | 33.566 | 143 | 76 | 3 | 535 | 659 | 205 | 346 | 1.33e-13 | 73.6 |
MS.gene000132.t1 | AT3G43700 | 33.566 | 143 | 76 | 3 | 535 | 659 | 205 | 346 | 1.59e-13 | 73.2 |
MS.gene000132.t1 | AT3G46510 | 28.448 | 232 | 150 | 5 | 194 | 412 | 354 | 582 | 1.76e-13 | 74.3 |
MS.gene000132.t1 | AT1G02690 | 23.964 | 338 | 224 | 10 | 38 | 368 | 114 | 425 | 2.57e-13 | 73.6 |
MS.gene000132.t1 | AT2G44900 | 29.677 | 310 | 191 | 8 | 68 | 370 | 458 | 747 | 4.78e-13 | 73.2 |
MS.gene000132.t1 | AT2G44900 | 29.677 | 310 | 191 | 8 | 68 | 370 | 458 | 747 | 4.78e-13 | 73.2 |
MS.gene000132.t1 | AT4G02150 | 23.875 | 289 | 196 | 7 | 68 | 352 | 139 | 407 | 1.31e-12 | 70.9 |
MS.gene000132.t1 | AT5G58680 | 24.111 | 253 | 180 | 3 | 284 | 526 | 69 | 319 | 1.94e-12 | 69.7 |
MS.gene000132.t1 | AT3G01400 | 24.710 | 259 | 179 | 4 | 286 | 532 | 73 | 327 | 2.55e-12 | 69.3 |
MS.gene000132.t1 | AT1G23030 | 28.755 | 233 | 159 | 5 | 163 | 391 | 300 | 529 | 4.70e-12 | 69.7 |
MS.gene000132.t1 | AT5G67340 | 28.846 | 208 | 138 | 5 | 181 | 387 | 416 | 614 | 4.97e-12 | 69.7 |
MS.gene000132.t1 | AT5G67340 | 28.846 | 208 | 138 | 5 | 181 | 387 | 416 | 614 | 4.97e-12 | 69.7 |
MS.gene000132.t1 | AT2G39760 | 32.117 | 137 | 81 | 2 | 536 | 660 | 195 | 331 | 3.22e-11 | 66.2 |
MS.gene000132.t1 | AT2G39760 | 32.117 | 137 | 81 | 1 | 536 | 660 | 195 | 331 | 3.39e-11 | 65.9 |
MS.gene000132.t1 | AT2G39760 | 32.117 | 137 | 81 | 1 | 536 | 660 | 195 | 331 | 3.39e-11 | 65.9 |
MS.gene000132.t1 | AT2G39760 | 32.117 | 137 | 81 | 1 | 536 | 660 | 195 | 331 | 3.49e-11 | 65.9 |
MS.gene000132.t1 | AT1G71020 | 29.493 | 217 | 149 | 4 | 193 | 407 | 194 | 408 | 3.84e-11 | 66.6 |
MS.gene000132.t1 | AT1G71020 | 29.493 | 217 | 149 | 4 | 193 | 407 | 342 | 556 | 4.58e-11 | 66.6 |
MS.gene000132.t1 | AT1G09270 | 23.127 | 307 | 211 | 8 | 67 | 368 | 60 | 346 | 7.98e-11 | 65.5 |
Find 139 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATAACTTCTTTCTTTATAT+TGG | 0.143559 | 5.4:+1724002 | None:intergenic |
ACTATTCTTGCAGGTCTATT+TGG | 0.171579 | 5.4:-1713751 | MS.gene000132:intron |
ATAATGTGCCCGACTTTATT+AGG | 0.176408 | 5.4:-1715506 | MS.gene000132:CDS |
AAGACCTCCCATCTAATATT+TGG | 0.221622 | 5.4:+1713167 | None:intergenic |
ATAACTTCTTTCTTTATATT+GGG | 0.225357 | 5.4:+1724003 | None:intergenic |
CTATTCTTGCAGGTCTATTT+GGG | 0.256343 | 5.4:-1713750 | MS.gene000132:intron |
GGAGCCTTGCAACCTGTTAT+TGG | 0.264847 | 5.4:-1723973 | MS.gene000132:CDS |
CGATGTTTGATGGTGGTTAT+AGG | 0.270918 | 5.4:-1713485 | MS.gene000132:CDS |
CGAAGTGCCCCAAGATAAAA+AGG | 0.288638 | 5.4:+1712760 | None:intergenic |
GAGTTGCTTATTGCACTTCT+TGG | 0.303129 | 5.4:-1714746 | MS.gene000132:CDS |
AAGAAAGAAGTTATTCTTGC+TGG | 0.306883 | 5.4:-1723994 | MS.gene000132:CDS |
CCTCCGAATGAGACTATTAA+TGG | 0.307802 | 5.4:+1724595 | None:intergenic |
GAGCCAAAGCAACTCGTCTT+TGG | 0.310880 | 5.4:+1714956 | None:intergenic |
TTGAGATTCCAAATATTAGA+TGG | 0.324635 | 5.4:-1713175 | MS.gene000132:CDS |
ACAAAGTAATTGCGGATATC+TGG | 0.331538 | 5.4:+1712419 | None:intergenic |
ACAATGAGCTGTTGATGTTC+TGG | 0.335518 | 5.4:+1724686 | None:intergenic |
AGACTAGAAGAGAAGATTAA+TGG | 0.341903 | 5.4:-1715211 | MS.gene000132:CDS |
TGCCCTAAGCAGCAACTTGA+TGG | 0.357336 | 5.4:-1714716 | MS.gene000132:CDS |
GAAAGGCCAGAAAAGAAAAC+TGG | 0.357510 | 5.4:-1726407 | MS.gene000132:CDS |
GCACCATCAAGTTGCTGCTT+AGG | 0.365309 | 5.4:+1714713 | None:intergenic |
AGTTCATTTGCTTGAATTTG+CGG | 0.367407 | 5.4:-1724405 | MS.gene000132:CDS |
ATAAGCTAACCTGCGGTGTT+GGG | 0.368341 | 5.4:+1714624 | None:intergenic |
TACCTAAGTAATCCAATAAC+AGG | 0.386840 | 5.4:+1723961 | None:intergenic |
TAATGTGCCCGACTTTATTA+GGG | 0.393063 | 5.4:-1715505 | MS.gene000132:CDS |
AGGTGGAATTAAGAGACTTC+AGG | 0.393094 | 5.4:-1715481 | MS.gene000132:CDS |
ATTTCTATTGTAGGCAACTA+AGG | 0.395213 | 5.4:-1715257 | MS.gene000132:intron |
TGTTGAAGGAGGTGCTGTTC+CGG | 0.396510 | 5.4:-1726082 | MS.gene000132:CDS |
CCTCTGGCTTTCAGAGCAAC+AGG | 0.401065 | 5.4:+1723719 | None:intergenic |
AAAGGAAGTGCTTTCGCACT+TGG | 0.408825 | 5.4:-1725982 | MS.gene000132:CDS |
GGTTGGTGTGATCGGAAATC+TGG | 0.411500 | 5.4:-1724037 | MS.gene000132:CDS |
AATTCAAGCAAATGAACTAA+TGG | 0.415099 | 5.4:+1724410 | None:intergenic |
ATTCCAAAGACGAGTTGCTT+TGG | 0.417982 | 5.4:-1714959 | MS.gene000132:CDS |
TTTGTTAATGCTCTTACAAA+GGG | 0.418843 | 5.4:-1712401 | MS.gene000132:CDS |
AACAGCGTCGCGAGCGTCTC+CGG | 0.425429 | 5.4:+1726336 | None:intergenic |
CACCATCAAGTTGCTGCTTA+GGG | 0.427628 | 5.4:+1714714 | None:intergenic |
GATGTTTGATGGTGGTTATA+GGG | 0.430996 | 5.4:-1713484 | MS.gene000132:intron |
TATACTTTGCTGCAGGTAAA+CGG | 0.436466 | 5.4:-1713557 | MS.gene000132:intron |
GGGAGATCTGTGTGTCTTGT+TGG | 0.439720 | 5.4:+1726368 | None:intergenic |
AAATGATGAAAACAAGAATC+AGG | 0.443211 | 5.4:-1724330 | MS.gene000132:intron |
AGCAGCTGATCAATATCTCT+TGG | 0.451044 | 5.4:-1712995 | MS.gene000132:CDS |
AAGATCAACAAGATGCTTCA+AGG | 0.451904 | 5.4:+1724652 | None:intergenic |
GCATTTCGTGCGATGTTTGA+TGG | 0.452560 | 5.4:-1713495 | MS.gene000132:CDS |
AGACAGAGTCATAGCTTTGT+TGG | 0.455185 | 5.4:+1714670 | None:intergenic |
TTCTCAACCTCATGTTCAAA+CGG | 0.455309 | 5.4:+1726003 | None:intergenic |
TATAAGCTAACCTGCGGTGT+TGG | 0.455337 | 5.4:+1714623 | None:intergenic |
GAGCGTCTCCGGTGAGAGGA+AGG | 0.456477 | 5.4:+1726347 | None:intergenic |
AGGGAAGCAGCATTGTTACT+TGG | 0.456874 | 5.4:-1723699 | MS.gene000132:CDS |
CTTTGTTAATGCTCTTACAA+AGG | 0.457464 | 5.4:-1712402 | MS.gene000132:CDS |
TGCATTGGGGAGATTGGCAC+AGG | 0.469390 | 5.4:-1723002 | MS.gene000132:intron |
GCAGTATTAAAACCCGTGTC+AGG | 0.472418 | 5.4:-1724535 | MS.gene000132:intron |
CGTTGGAAGAGAAAGAAGAA+AGG | 0.473183 | 5.4:+1726281 | None:intergenic |
CTCTCATAAGATATAACAAA+TGG | 0.473224 | 5.4:+1714995 | None:intergenic |
TTATTACAGGTTGGTGTGAT+CGG | 0.484265 | 5.4:-1724045 | MS.gene000132:intron |
TTTGAACATGAGGTTGAGAA+AGG | 0.487812 | 5.4:-1726000 | MS.gene000132:CDS |
AGCGTGAGTGGCGCGTTTAG+CGG | 0.492689 | 5.4:+1726243 | None:intergenic |
GCCGTTGCCGTTTGAACATG+AGG | 0.493881 | 5.4:-1726010 | MS.gene000132:CDS |
ACCTGCGGTGTTGGGGATGG+AGG | 0.501253 | 5.4:+1714632 | None:intergenic |
GTAACAATGCTGCTTCCCTC+TGG | 0.503185 | 5.4:+1723703 | None:intergenic |
GATAAATTAAGTGAAACGCC+AGG | 0.505997 | 5.4:-1712738 | MS.gene000132:CDS |
TGCTGTGGCTTTATTCAAGT+TGG | 0.507707 | 5.4:-1714693 | MS.gene000132:CDS |
TCTCAATGATGTAGCATTGA+AGG | 0.508118 | 5.4:+1712794 | None:intergenic |
GATGGAGGAGCAGCATCTAC+AGG | 0.508182 | 5.4:+1714647 | None:intergenic |
TTGTCCAGATTTATCTACAC+TGG | 0.508615 | 5.4:-1713060 | MS.gene000132:intron |
GACTGAAGCATTTCTATCAA+AGG | 0.509946 | 5.4:+1723058 | None:intergenic |
TAACTTCTTTCTTTATATTG+GGG | 0.511680 | 5.4:+1724004 | None:intergenic |
TTATGGCCTTGCAGAGAATG+AGG | 0.514595 | 5.4:-1715638 | MS.gene000132:intron |
ATTGTGAATGTGATTGTTGA+AGG | 0.518214 | 5.4:-1726096 | MS.gene000132:CDS |
AGAATGGCACATGCTACGCC+TGG | 0.518489 | 5.4:+1712366 | None:intergenic |
TGAAGATGTTTAATCAAAGC+CGG | 0.521442 | 5.4:+1726063 | None:intergenic |
CCCGACTTTATTAGGGTAGG+TGG | 0.526816 | 5.4:-1715498 | MS.gene000132:CDS |
AACTTCTTTCTTTATATTGG+GGG | 0.527300 | 5.4:+1724005 | None:intergenic |
CGAAGCATCAAAATCAGAGT+TGG | 0.530641 | 5.4:+1724191 | None:intergenic |
CTAACCTGCGGTGTTGGGGA+TGG | 0.534564 | 5.4:+1714629 | None:intergenic |
GTGCCATTAATAGTCTCATT+CGG | 0.535005 | 5.4:-1724598 | MS.gene000132:CDS |
TGAGATTCCAAATATTAGAT+GGG | 0.536128 | 5.4:-1713174 | MS.gene000132:CDS |
ACTTGGACTTCTTGCTGTCA+AGG | 0.539215 | 5.4:-1725965 | MS.gene000132:intron |
AAGATCAGCGAGAGCGTGAG+TGG | 0.542909 | 5.4:+1726231 | None:intergenic |
TCCTCCATCCCCAACACCGC+AGG | 0.546729 | 5.4:-1714633 | MS.gene000132:intron |
TCTTATGAGAGTTTCTGAAA+AGG | 0.548033 | 5.4:-1714983 | MS.gene000132:CDS |
AAAGTGCAAAGAGCAGCTGC+TGG | 0.552402 | 5.4:-1724377 | MS.gene000132:CDS |
ATTCTTGCAGGTCTATTTGG+GGG | 0.558381 | 5.4:-1713748 | MS.gene000132:intron |
GCTGATCAATATCTCTTGGA+AGG | 0.559023 | 5.4:-1712991 | MS.gene000132:CDS |
TAATCCAATAACAGGTTGCA+AGG | 0.560106 | 5.4:+1723969 | None:intergenic |
TCCACCTACCCTAATAAAGT+CGG | 0.563567 | 5.4:+1715497 | None:intergenic |
CTACCATCATCAGAAAAGAA+AGG | 0.563786 | 5.4:-1726424 | MS.gene000132:CDS |
AAAGGGGAACTCCAACATCC+AGG | 0.564270 | 5.4:-1712384 | MS.gene000132:CDS |
TTGAAGAAGCAAACCTGACA+CGG | 0.565682 | 5.4:+1724522 | None:intergenic |
TCGCGAGCGTCTCCGGTGAG+AGG | 0.565708 | 5.4:+1726343 | None:intergenic |
TAAGCTAACCTGCGGTGTTG+GGG | 0.566863 | 5.4:+1714625 | None:intergenic |
CAGATCTCCCTTCCTCTCAC+CGG | 0.570009 | 5.4:-1726355 | MS.gene000132:CDS |
TCAATGTGTAGGACGGAAGG+TGG | 0.574901 | 5.4:-1724440 | MS.gene000132:intron |
CACATGCTACGCCTGGATGT+TGG | 0.577907 | 5.4:+1712373 | None:intergenic |
ATCTCAATGTGTAGGACGGA+AGG | 0.578215 | 5.4:-1724443 | MS.gene000132:intron |
CCACCTACCCTAATAAAGTC+GGG | 0.579855 | 5.4:+1715498 | None:intergenic |
TCAAGCAAATGAACTAATGG+TGG | 0.580125 | 5.4:+1724413 | None:intergenic |
GAGCATTAACAAAGTAATTG+CGG | 0.581468 | 5.4:+1712411 | None:intergenic |
ATCTTACCTCATTCTCTGCA+AGG | 0.582750 | 5.4:+1715632 | None:intergenic |
CAGATTTATCTACACTGGAT+CGG | 0.583274 | 5.4:-1713055 | MS.gene000132:CDS |
AACCTGTTATTGGATTACTT+AGG | 0.584287 | 5.4:-1723963 | MS.gene000132:intron |
ACCTCATGTTCAAACGGCAA+CGG | 0.585671 | 5.4:+1726009 | None:intergenic |
TGCTGGTGCATTACGAACCC+TGG | 0.590945 | 5.4:-1724360 | MS.gene000132:CDS |
TGCTGCTATTCATTATGAAG+CGG | 0.591200 | 5.4:-1724159 | MS.gene000132:intron |
AGCGTCTCCGGTGAGAGGAA+GGG | 0.595419 | 5.4:+1726348 | None:intergenic |
CAGGATACACATAACCAAGC+TGG | 0.595987 | 5.4:-1715748 | MS.gene000132:CDS |
TATTATAGGAGAAGGATGCA+AGG | 0.596049 | 5.4:-1713202 | MS.gene000132:intron |
AGAGATATTGATCAGCTGCT+CGG | 0.596163 | 5.4:+1712998 | None:intergenic |
TATTCTTGCAGGTCTATTTG+GGG | 0.597088 | 5.4:-1713749 | MS.gene000132:intron |
GAGTCAAGAAGCTTCAGTAG+TGG | 0.600458 | 5.4:+1715700 | None:intergenic |
GGAAGCTCTATCGAATTCGT+TGG | 0.603823 | 5.4:+1726264 | None:intergenic |
CCATTAATAGTCTCATTCGG+AGG | 0.607900 | 5.4:-1724595 | MS.gene000132:CDS |
TGAACAGAATCATGTTGAGT+CGG | 0.610099 | 5.4:+1726036 | None:intergenic |
ATAAATTAAGTGAAACGCCA+GGG | 0.613914 | 5.4:-1712737 | MS.gene000132:intron |
ATTATAGGAGAAGGATGCAA+GGG | 0.619529 | 5.4:-1713201 | MS.gene000132:intron |
CAGTGTGTGCAATACCAGCT+TGG | 0.621308 | 5.4:+1715734 | None:intergenic |
TGAAGAAGCAAACCTGACAC+GGG | 0.621585 | 5.4:+1724523 | None:intergenic |
AGCGACTGATTCAGACTGCA+AGG | 0.623102 | 5.4:-1723667 | MS.gene000132:intron |
AAAATATTTATTGACCACAA+TGG | 0.632774 | 5.4:-1714901 | MS.gene000132:intron |
ATGTGAATACACGATTGCAC+AGG | 0.633277 | 5.4:-1712956 | MS.gene000132:intron |
AGGTCTTTGAGCTTATGATG+AGG | 0.635524 | 5.4:-1713151 | MS.gene000132:intron |
GCAGCAACTTGATGGTGCTG+TGG | 0.639343 | 5.4:-1714708 | MS.gene000132:CDS |
CTGTTGCTCTGAAAGCCAGA+GGG | 0.641542 | 5.4:-1723718 | MS.gene000132:CDS |
CATTAATAGTCTCATTCGGA+GGG | 0.643003 | 5.4:-1724594 | MS.gene000132:CDS |
GATTCCAAATATTAGATGGG+AGG | 0.643347 | 5.4:-1713171 | MS.gene000132:CDS |
TAGGAACATGCATACCATTG+TGG | 0.645222 | 5.4:+1714887 | None:intergenic |
CCTGTTGCTCTGAAAGCCAG+AGG | 0.647880 | 5.4:-1723719 | MS.gene000132:CDS |
GGAATTAAGAGACTTCAGGA+TGG | 0.648542 | 5.4:-1715477 | MS.gene000132:CDS |
CTGATCAATATCTCTTGGAA+GGG | 0.649009 | 5.4:-1712990 | MS.gene000132:CDS |
GTGAATGTGATTGTTGAAGG+AGG | 0.650417 | 5.4:-1726093 | MS.gene000132:CDS |
TTTCGTGCGATGTTTGATGG+TGG | 0.657371 | 5.4:-1713492 | MS.gene000132:CDS |
ACAGAATCATGTTGAGTCGG+CGG | 0.661283 | 5.4:+1726039 | None:intergenic |
CAATGTGTAGGACGGAAGGT+GGG | 0.662821 | 5.4:-1724439 | MS.gene000132:intron |
TTGTTAATGCTCTTACAAAG+GGG | 0.666782 | 5.4:-1712400 | MS.gene000132:CDS |
GCTGGTATTGCACACACTGG+CGG | 0.671039 | 5.4:-1715730 | MS.gene000132:CDS |
TAGGTTCACATTGTACAGAG+AGG | 0.672210 | 5.4:-1723091 | MS.gene000132:CDS |
GTGCCCGACTTTATTAGGGT+AGG | 0.672496 | 5.4:-1715501 | MS.gene000132:CDS |
TGAAACGTGTTGATTGACGT+CGG | 0.679095 | 5.4:+1726309 | None:intergenic |
GATATTGATCAGCTGCTCGG+AGG | 0.684516 | 5.4:+1713001 | None:intergenic |
CAAGCTGGTATTGCACACAC+TGG | 0.688168 | 5.4:-1715733 | MS.gene000132:CDS |
CAACAGCTCATTGTAGACAG+TGG | 0.700521 | 5.4:-1724677 | MS.gene000132:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 1712379 | 1726455 | 1712379 | ID=MS.gene000132 |
chr5.4 | mRNA | 1712379 | 1726455 | 1712379 | ID=MS.gene000132.t1;Parent=MS.gene000132 |
chr5.4 | exon | 1726221 | 1726455 | 1726221 | ID=MS.gene000132.t1.exon1;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1726221 | 1726455 | 1726221 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1725966 | 1726123 | 1725966 | ID=MS.gene000132.t1.exon2;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1725966 | 1726123 | 1725966 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1724536 | 1724708 | 1724536 | ID=MS.gene000132.t1.exon3;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1724536 | 1724708 | 1724536 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1724331 | 1724451 | 1724331 | ID=MS.gene000132.t1.exon4;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1724331 | 1724451 | 1724331 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1724160 | 1724234 | 1724160 | ID=MS.gene000132.t1.exon5;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1724160 | 1724234 | 1724160 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1723964 | 1724058 | 1723964 | ID=MS.gene000132.t1.exon6;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1723964 | 1724058 | 1723964 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1723668 | 1723743 | 1723668 | ID=MS.gene000132.t1.exon7;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1723668 | 1723743 | 1723668 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1723003 | 1723110 | 1723003 | ID=MS.gene000132.t1.exon8;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1723003 | 1723110 | 1723003 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1715639 | 1715767 | 1715639 | ID=MS.gene000132.t1.exon9;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1715639 | 1715767 | 1715639 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1715461 | 1715529 | 1715461 | ID=MS.gene000132.t1.exon10;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1715461 | 1715529 | 1715461 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1715207 | 1715266 | 1715207 | ID=MS.gene000132.t1.exon11;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1715207 | 1715266 | 1715207 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1714902 | 1715025 | 1714902 | ID=MS.gene000132.t1.exon12;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1714902 | 1715025 | 1714902 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1714634 | 1714773 | 1714634 | ID=MS.gene000132.t1.exon13;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1714634 | 1714773 | 1714634 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1713697 | 1713760 | 1713697 | ID=MS.gene000132.t1.exon14;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1713697 | 1713760 | 1713697 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1713485 | 1713564 | 1713485 | ID=MS.gene000132.t1.exon15;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1713485 | 1713564 | 1713485 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1713152 | 1713216 | 1713152 | ID=MS.gene000132.t1.exon16;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1713152 | 1713216 | 1713152 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1712957 | 1713074 | 1712957 | ID=MS.gene000132.t1.exon17;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1712957 | 1713074 | 1712957 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1712738 | 1712862 | 1712738 | ID=MS.gene000132.t1.exon18;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1712738 | 1712862 | 1712738 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
chr5.4 | exon | 1712379 | 1712469 | 1712379 | ID=MS.gene000132.t1.exon19;Parent=MS.gene000132.t1 |
chr5.4 | CDS | 1712379 | 1712469 | 1712379 | ID=cds.MS.gene000132.t1;Parent=MS.gene000132.t1 |
Gene Sequence |
Protein sequence |