Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000407.t1 | XP_003630450.1 | 98.6 | 498 | 7 | 0 | 3 | 500 | 1 | 498 | 2.50E-197 | 698.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000407.t1 | Q39817 | 86.1 | 481 | 64 | 2 | 3 | 480 | 1 | 481 | 9.4e-161 | 568.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000407.t1 | G7LGJ8 | 98.6 | 498 | 7 | 0 | 3 | 500 | 1 | 498 | 1.8e-197 | 698.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000407 | MS.gene001347 | PPI |
| MS.gene56457 | MS.gene000407 | PPI |
| MS.gene000407 | MS.gene006869 | PPI |
| MS.gene000407 | MS.gene82400 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000407.t1 | MTR_8g095680 | 97.992 | 498 | 10 | 0 | 3 | 500 | 1 | 498 | 0.0 | 993 |
| MS.gene000407.t1 | MTR_3g098430 | 82.093 | 497 | 85 | 3 | 3 | 498 | 1 | 494 | 0.0 | 778 |
| MS.gene000407.t1 | MTR_3g098430 | 82.093 | 497 | 85 | 3 | 3 | 498 | 1 | 494 | 0.0 | 778 |
| MS.gene000407.t1 | MTR_1g083960 | 40.526 | 380 | 167 | 13 | 38 | 410 | 26 | 353 | 3.66e-60 | 204 |
| MS.gene000407.t1 | MTR_4g068080 | 34.165 | 401 | 182 | 15 | 17 | 402 | 12 | 345 | 6.07e-59 | 201 |
| MS.gene000407.t1 | MTR_7g080370 | 33.090 | 411 | 199 | 13 | 3 | 402 | 1 | 346 | 8.13e-59 | 200 |
| MS.gene000407.t1 | MTR_7g080370 | 33.090 | 411 | 199 | 13 | 3 | 402 | 1 | 346 | 1.87e-58 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000407.t1 | AT5G61790 | 76.797 | 487 | 110 | 2 | 13 | 498 | 6 | 490 | 0.0 | 763 |
| MS.gene000407.t1 | AT5G07340 | 77.253 | 466 | 103 | 2 | 36 | 498 | 27 | 492 | 0.0 | 730 |
| MS.gene000407.t1 | AT5G07340 | 77.538 | 463 | 101 | 2 | 39 | 498 | 38 | 500 | 0.0 | 729 |
| MS.gene000407.t1 | AT1G09210 | 38.686 | 411 | 183 | 12 | 7 | 410 | 3 | 351 | 1.65e-61 | 207 |
| MS.gene000407.t1 | AT1G56340 | 39.173 | 411 | 177 | 14 | 7 | 410 | 7 | 351 | 2.62e-61 | 207 |
| MS.gene000407.t1 | AT1G56340 | 39.173 | 411 | 177 | 14 | 7 | 410 | 7 | 351 | 4.58e-61 | 206 |
| MS.gene000407.t1 | AT1G08450 | 34.588 | 425 | 213 | 15 | 14 | 430 | 10 | 377 | 1.44e-58 | 199 |
| MS.gene000407.t1 | AT1G08450 | 31.059 | 425 | 203 | 16 | 14 | 430 | 10 | 352 | 1.47e-43 | 159 |
| MS.gene000407.t1 | AT1G08450 | 36.207 | 232 | 106 | 6 | 199 | 430 | 134 | 323 | 2.84e-27 | 113 |
Find 140 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGGGCTGCTTCACAATT+TGG | 0.117242 | 4.3:-7335393 | None:intergenic |
| AATTGAAAATCCAGCTTATA+AGG | 0.199133 | 4.3:+7335482 | MS.gene000407:CDS |
| CAATTTGGGTTAGTAATCTT+AGG | 0.221903 | 4.3:-7335378 | None:intergenic |
| GGTTTCTTATCTTCAGGATC+TGG | 0.250300 | 4.3:-7335150 | None:intergenic |
| GTTTCATCGACAGGGGAATA+TGG | 0.254330 | 4.3:+7332811 | None:intergenic |
| CTCTTTCTCAATAGTAAACT+TGG | 0.257204 | 4.3:-7335688 | None:intergenic |
| AGTGAGGGGCATGAAGATTA+TGG | 0.263277 | 4.3:+7334658 | MS.gene000407:CDS |
| ACCGTTATATTCATTCTTAT+CGG | 0.278275 | 4.3:-7333101 | None:intergenic |
| TCCTCAGGTTTCTTATCTTC+AGG | 0.293756 | 4.3:-7335156 | None:intergenic |
| CAGCTATCGGTATTGAGATT+TGG | 0.301537 | 4.3:+7335577 | MS.gene000407:CDS |
| TCTTCATCGTCCCAATCTTC+TGG | 0.309076 | 4.3:-7335336 | None:intergenic |
| TATGCTGGATTCTTCTTCAT+TGG | 0.315161 | 4.3:-7335435 | None:intergenic |
| TCTCCCTATTCTATCATGTT+TGG | 0.320919 | 4.3:+7334874 | MS.gene000407:CDS |
| ATCCAGCTTATAAGGGTATA+TGG | 0.323335 | 4.3:+7335490 | MS.gene000407:CDS |
| ATCCAGCATACAAGGGAAAA+TGG | 0.325180 | 4.3:+7335448 | MS.gene000407:CDS |
| TTCTGTGCATTCTAGGCATC+TGG | 0.336994 | 4.3:+7334623 | MS.gene000407:intron |
| CAGGGGCTGCTTCACAATTT+GGG | 0.337351 | 4.3:-7335392 | None:intergenic |
| AGCTCAAAGTAATCAGGGTT+TGG | 0.338624 | 4.3:-7335528 | None:intergenic |
| TCAGGATCTGGGATTGTCTT+GGG | 0.366663 | 4.3:-7335138 | None:intergenic |
| GAAACAGAAGGAAGAAGAAA+AGG | 0.367207 | 4.3:+7335710 | MS.gene000407:CDS |
| AGCTGCAATAGGCTCAAAAT+CGG | 0.385593 | 4.3:-7335559 | None:intergenic |
| TGACGGGGAACAGAAGAAAA+AGG | 0.390374 | 4.3:+7335071 | MS.gene000407:CDS |
| AGAATCATTGTCGAATTCCT+TGG | 0.403305 | 4.3:-7334854 | None:intergenic |
| TTTGTGGCCCCACACTTGTC+AGG | 0.403994 | 4.3:-7334898 | None:intergenic |
| AATTTGGGTTAGTAATCTTA+GGG | 0.406892 | 4.3:-7335377 | None:intergenic |
| TCATCAGGCTTTACTGCACT+TGG | 0.408900 | 4.3:-7335207 | None:intergenic |
| CAAAATTTGCAACTCATTGT+CGG | 0.409058 | 4.3:-7335046 | None:intergenic |
| TTCAGGATCTGGGATTGTCT+TGG | 0.412629 | 4.3:-7335139 | None:intergenic |
| AAAATTTGCAACTCATTGTC+GGG | 0.414444 | 4.3:-7335045 | None:intergenic |
| GTTTCTTATCTTCAGGATCT+GGG | 0.420391 | 4.3:-7335149 | None:intergenic |
| GGCTTTACTGCACTTGGGTC+GGG | 0.421849 | 4.3:-7335201 | None:intergenic |
| TCATCATCTAACCATCCTTC+AGG | 0.423626 | 4.3:-7335279 | None:intergenic |
| GATTGTCTTGGGAGGGATAA+GGG | 0.435368 | 4.3:-7335127 | None:intergenic |
| TGATGAGCCTGTGATTCTTA+AGG | 0.438519 | 4.3:+7334729 | MS.gene000407:CDS |
| GAATCATTGTCGAATTCCTT+GGG | 0.440765 | 4.3:-7334853 | None:intergenic |
| TCTCTCTCGTCCCAGTCCTC+AGG | 0.441848 | 4.3:-7335171 | None:intergenic |
| AGGACCAAACATGATAGAAT+AGG | 0.444316 | 4.3:-7334878 | None:intergenic |
| CGATGAAGAGGATGGTGAAT+GGG | 0.445046 | 4.3:+7335350 | MS.gene000407:CDS |
| TTTGCAGGATCTCATTGAAA+AGG | 0.448014 | 4.3:+7336107 | MS.gene000407:intron |
| GTGAGGGGCATGAAGATTAT+GGG | 0.448284 | 4.3:+7334659 | MS.gene000407:CDS |
| GCATCCTCATCCCAGTCATC+AGG | 0.452608 | 4.3:-7335222 | None:intergenic |
| TACCGCGTCATCGGCATCAT+CGG | 0.454767 | 4.3:-7332918 | None:intergenic |
| TTCCTTCGTATCGTATTTGG+TGG | 0.456544 | 4.3:+7336195 | MS.gene000407:CDS |
| GGCTACAAAACCAGAAGATT+GGG | 0.458059 | 4.3:+7335326 | MS.gene000407:CDS |
| AGGCTACAAAACCAGAAGAT+TGG | 0.458247 | 4.3:+7335325 | MS.gene000407:CDS |
| ATTGAAAATCCAGCTTATAA+GGG | 0.458787 | 4.3:+7335483 | MS.gene000407:CDS |
| TCAATACCGATAGCTGCAAT+AGG | 0.462507 | 4.3:-7335570 | None:intergenic |
| GTGCAGTAAAGCCTGATGAC+TGG | 0.469031 | 4.3:+7335211 | MS.gene000407:CDS |
| ACGATGAAGAGGATGGTGAA+TGG | 0.471046 | 4.3:+7335349 | MS.gene000407:CDS |
| GAAGAAGAATCCAGCATACA+AGG | 0.471522 | 4.3:+7335440 | MS.gene000407:CDS |
| TTTCATCGACAGGGGAATAT+GGG | 0.471974 | 4.3:+7332812 | None:intergenic |
| GGCAAATTTCTTATCTTCTG+AGG | 0.473999 | 4.3:+7335092 | MS.gene000407:CDS |
| GGATTGTCTTGGGAGGGATA+AGG | 0.478867 | 4.3:-7335128 | None:intergenic |
| TCAACATACTCCCCACTCTT+CGG | 0.479318 | 4.3:-7334952 | None:intergenic |
| ATAAGATTGCCGCGTCATAC+CGG | 0.480655 | 4.3:+7335649 | MS.gene000407:CDS |
| CTGGTTGTGGTGAGTGGAAA+CGG | 0.483867 | 4.3:+7335412 | MS.gene000407:CDS |
| AGCTTGTCAGAGGGAACAGA+TGG | 0.491925 | 4.3:-7334994 | None:intergenic |
| CGTCATACCGGGAGACTACA+TGG | 0.492103 | 4.3:+7335661 | MS.gene000407:CDS |
| AATGAAGTGCACCTTGTTTG+TGG | 0.492594 | 4.3:-7334914 | None:intergenic |
| TCTGGGTCATCTATCTCCTC+AGG | 0.498032 | 4.3:-7335303 | None:intergenic |
| CTGGGATGAGGATGCACCCT+TGG | 0.500943 | 4.3:+7335230 | MS.gene000407:CDS |
| TTCCATATACCCTTATAAGC+TGG | 0.501975 | 4.3:-7335492 | None:intergenic |
| TTGCAGGATCTCATTGAAAA+GGG | 0.502190 | 4.3:+7336108 | MS.gene000407:intron |
| AGAATTCCAACTGTGAGATT+CGG | 0.503519 | 4.3:-7336141 | None:intergenic |
| AAGATGAATTACCGCGTCAT+CGG | 0.505451 | 4.3:-7332927 | None:intergenic |
| TTCTTCATCAAGAATTTCCA+AGG | 0.505747 | 4.3:-7335247 | None:intergenic |
| CGTTTCCACTCACCACAACC+AGG | 0.506800 | 4.3:-7335411 | None:intergenic |
| TAAGATTGCCGCGTCATACC+GGG | 0.509139 | 4.3:+7335650 | MS.gene000407:CDS |
| CATCATCGGAAGCATGAAGA+AGG | 0.517297 | 4.3:-7332904 | None:intergenic |
| AGGCTTTACTGCACTTGGGT+CGG | 0.517691 | 4.3:-7335202 | None:intergenic |
| AAGATAAGAAACCTGAGGAC+TGG | 0.518095 | 4.3:+7335160 | MS.gene000407:CDS |
| TTTGAGCCTATTGCAGCTAT+CGG | 0.519883 | 4.3:+7335564 | MS.gene000407:CDS |
| TCTTTCTCAATAGTAAACTT+GGG | 0.520577 | 4.3:-7335687 | None:intergenic |
| GGACCAAACATGATAGAATA+GGG | 0.520952 | 4.3:-7334877 | None:intergenic |
| GATATGCACCACCACATTCG+AGG | 0.524176 | 4.3:-7334795 | None:intergenic |
| AAGCTTGTAGGCACTCAGGA+AGG | 0.524251 | 4.3:-7335976 | None:intergenic |
| TAAGGGTATATGGAAGCCTC+AGG | 0.527187 | 4.3:+7335500 | MS.gene000407:CDS |
| TATTGAGATTTGGACAATGC+AGG | 0.530334 | 4.3:+7335587 | MS.gene000407:CDS |
| TGTGAAGCAGCCCCTGGTTG+TGG | 0.538010 | 4.3:+7335399 | MS.gene000407:CDS |
| TCCGATAAGAATGAATATAA+CGG | 0.541713 | 4.3:+7333100 | MS.gene000407:CDS |
| TTTGAGACTCGCCTTCAGAA+TGG | 0.542633 | 4.3:+7334772 | MS.gene000407:CDS |
| TGTTTGGTCCTGACAAGTGT+GGG | 0.544403 | 4.3:+7334890 | MS.gene000407:CDS |
| GATTGGGACGATGAAGAGGA+TGG | 0.545919 | 4.3:+7335342 | MS.gene000407:CDS |
| GATTCATCCTTAAGAATCAC+AGG | 0.546646 | 4.3:-7334736 | None:intergenic |
| CCAAATTGTGAAGCAGCCCC+TGG | 0.552013 | 4.3:+7335393 | MS.gene000407:CDS |
| CTTCTACGAATCATTTGATG+AGG | 0.552271 | 4.3:+7333054 | MS.gene000407:CDS |
| GCTGCAATAGGCTCAAAATC+GGG | 0.552533 | 4.3:-7335558 | None:intergenic |
| GAACGAAAGCGAATTCCTCT+CGG | 0.553910 | 4.3:+7332836 | MS.gene000407:CDS |
| CAGCCCCTGGTTGTGGTGAG+TGG | 0.555593 | 4.3:+7335406 | MS.gene000407:CDS |
| TATCTTCGACCACAGGAGGC+TGG | 0.558917 | 4.3:+7334823 | MS.gene000407:CDS |
| TGGAATTCTTGTAGCCGTTG+TGG | 0.561141 | 4.3:+7336155 | MS.gene000407:CDS |
| TTCGACCACAGGAGGCTGGT+TGG | 0.565629 | 4.3:+7334827 | MS.gene000407:CDS |
| CACATTCGAGGCCATTCTGA+AGG | 0.570634 | 4.3:-7334783 | None:intergenic |
| TGCAGTAAAGCCTGATGACT+GGG | 0.572111 | 4.3:+7335212 | MS.gene000407:CDS |
| CAAGTGTGGGGCCACAAACA+AGG | 0.573921 | 4.3:+7334903 | MS.gene000407:CDS |
| GGATCTGGGATTGTCTTGGG+AGG | 0.575634 | 4.3:-7335135 | None:intergenic |
| TCCTTCGTATCGTATTTGGT+GGG | 0.575662 | 4.3:+7336196 | MS.gene000407:CDS |
| TGGGCTTCCATGTAGTCTCC+CGG | 0.577142 | 4.3:-7335668 | None:intergenic |
| GGTTTCCAACCAGCCTCCTG+TGG | 0.577641 | 4.3:-7334832 | None:intergenic |
| AGATAAGAAACCTGAGGACT+GGG | 0.579804 | 4.3:+7335161 | MS.gene000407:CDS |
| ACGCAGCCGAATCTCACAGT+TGG | 0.579809 | 4.3:+7336135 | MS.gene000407:CDS |
| CTTCAGAATGGCCTCGAATG+TGG | 0.579974 | 4.3:+7334784 | MS.gene000407:CDS |
| AGCTTGTAGGCACTCAGGAA+GGG | 0.580489 | 4.3:-7335975 | None:intergenic |
| ATGTTTGGTCCTGACAAGTG+TGG | 0.588377 | 4.3:+7334889 | MS.gene000407:CDS |
| GCTTGTCAGAGGGAACAGAT+GGG | 0.589147 | 4.3:-7334993 | None:intergenic |
| AGAAGATTGGGACGATGAAG+AGG | 0.591248 | 4.3:+7335338 | MS.gene000407:CDS |
| CTGGAAGCATTCAAAGAGTG+AGG | 0.591782 | 4.3:+7334642 | MS.gene000407:CDS |
| TCTAAAATATCTTCGACCAC+AGG | 0.596292 | 4.3:+7334816 | MS.gene000407:CDS |
| CATCAGGCTTTACTGCACTT+GGG | 0.599406 | 4.3:-7335206 | None:intergenic |
| TGGAAGCATTCAAAGAGTGA+GGG | 0.600050 | 4.3:+7334643 | MS.gene000407:CDS |
| CTTGTCAGAGGGAACAGATG+GGG | 0.612571 | 4.3:-7334992 | None:intergenic |
| AAGCTGTGAAACCTGAAGGA+TGG | 0.618409 | 4.3:+7335268 | MS.gene000407:CDS |
| GTCTTGGGAGGGATAAGGGA+AGG | 0.622855 | 4.3:-7335123 | None:intergenic |
| CACGTGAGATAGCTTGTCAG+AGG | 0.622862 | 4.3:-7335004 | None:intergenic |
| AAAATATCTTCGACCACAGG+AGG | 0.623259 | 4.3:+7334819 | MS.gene000407:CDS |
| TATTGAGAAAGAGAAACAGA+AGG | 0.623870 | 4.3:+7335698 | MS.gene000407:CDS |
| TTGTCAGAGGGAACAGATGG+GGG | 0.626548 | 4.3:-7334991 | None:intergenic |
| TTTCCACTCACCACAACCAG+GGG | 0.634593 | 4.3:-7335409 | None:intergenic |
| TCTTCATCAAGAATTTCCAA+GGG | 0.634894 | 4.3:-7335246 | None:intergenic |
| GTTTCCACTCACCACAACCA+GGG | 0.635541 | 4.3:-7335410 | None:intergenic |
| ATTTGGGTTAGTAATCTTAG+GGG | 0.637193 | 4.3:-7335376 | None:intergenic |
| TCAGGGTTTGGAATATCCTG+AGG | 0.637275 | 4.3:-7335516 | None:intergenic |
| GAAAAGGACACTGAATCAAG+TGG | 0.639039 | 4.3:+7335726 | MS.gene000407:CDS |
| GAGATTTGGACAATGCAGGA+TGG | 0.641655 | 4.3:+7335591 | MS.gene000407:CDS |
| AAAGCCTGATGACTGGGATG+AGG | 0.642158 | 4.3:+7335218 | MS.gene000407:CDS |
| TTCCGATGATGCCGATGACG+CGG | 0.642498 | 4.3:+7332916 | MS.gene000407:CDS |
| TCCCACCAAATACGATACGA+AGG | 0.645566 | 4.3:-7336197 | None:intergenic |
| GGAGGCTGGTTGGAAACCCA+AGG | 0.645830 | 4.3:+7334837 | MS.gene000407:CDS |
| AAGAAGAATCCAGCATACAA+GGG | 0.648479 | 4.3:+7335441 | MS.gene000407:CDS |
| GGAAGCATTCAAAGAGTGAG+GGG | 0.655093 | 4.3:+7334644 | MS.gene000407:CDS |
| TCCTGAAGATAAGAAACCTG+AGG | 0.657027 | 4.3:+7335155 | MS.gene000407:CDS |
| ATGGTTAGATGATGAGCCTG+AGG | 0.657489 | 4.3:+7335287 | MS.gene000407:CDS |
| CAGAATGGCCTCGAATGTGG+TGG | 0.657663 | 4.3:+7334787 | MS.gene000407:CDS |
| GATCTGGGATTGTCTTGGGA+GGG | 0.659461 | 4.3:-7335134 | None:intergenic |
| TGTAGTCTCCCGGTATGACG+CGG | 0.661561 | 4.3:-7335658 | None:intergenic |
| GAAGAAGCTGTGAAACCTGA+AGG | 0.662222 | 4.3:+7335264 | MS.gene000407:CDS |
| GTTTGGTCCTGACAAGTGTG+GGG | 0.685526 | 4.3:+7334891 | MS.gene000407:CDS |
| TGAGGAGATAGATGACCCAG+AGG | 0.689200 | 4.3:+7335305 | MS.gene000407:CDS |
| ACGTGAGATAGCTTGTCAGA+GGG | 0.689496 | 4.3:-7335003 | None:intergenic |
| TGTCAAGACAATAACCACAA+CGG | 0.738680 | 4.3:-7336169 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTATAGAATATAATAT+TGG | + | chr4.3:7334192-7334211 | MS.gene000407:intron | 10.0% |
| !! | ATTTATAAAAAAAAACATAC+AGG | + | chr4.3:7333732-7333751 | MS.gene000407:intron | 10.0% |
| !!! | ATTGATTTTGTTAATTTTTT+TGG | + | chr4.3:7333244-7333263 | MS.gene000407:intron | 10.0% |
| !!! | ATTTTTATTTACAAAAAGAT+TGG | + | chr4.3:7333507-7333526 | MS.gene000407:intron | 10.0% |
| !!! | GTATGTTTTTTTTTATAAAT+AGG | - | chr4.3:7333732-7333751 | None:intergenic | 10.0% |
| !! | AATAATAAATATTGTCATCA+AGG | - | chr4.3:7333536-7333555 | None:intergenic | 15.0% |
| !! | TTTCAAAAAAAAATTCTTGT+AGG | + | chr4.3:7333312-7333331 | MS.gene000407:intron | 15.0% |
| !! | TTTCATTAATTGTGAATTAA+TGG | + | chr4.3:7333168-7333187 | MS.gene000407:intron | 15.0% |
| !!! | ACTATTTTTGACAAAAAAAT+TGG | - | chr4.3:7333769-7333788 | None:intergenic | 15.0% |
| !!! | TTTTGAAATAGATTTGAAAT+TGG | - | chr4.3:7333300-7333319 | None:intergenic | 15.0% |
| !! | ATATTCTATAACTATTTCAG+AGG | - | chr4.3:7334187-7334206 | None:intergenic | 20.0% |
| !! | ATGATTATGAAAATAAGAGT+CGG | + | chr4.3:7334278-7334297 | MS.gene000407:intron | 20.0% |
| !! | TAGAATATAATATTGGAAAG+TGG | + | chr4.3:7334199-7334218 | MS.gene000407:intron | 20.0% |
| !! | TATTCTATAACTATTTCAGA+GGG | - | chr4.3:7334186-7334205 | None:intergenic | 20.0% |
| !! | TTTAACAGTATATGTATTTG+TGG | + | chr4.3:7334232-7334251 | MS.gene000407:intron | 20.0% |
| !!! | TTCAACTTTAATTTTTCAAG+TGG | + | chr4.3:7333965-7333984 | MS.gene000407:intron | 20.0% |
| ! | AAGTAAAATCATGCATAAGA+AGG | - | chr4.3:7335903-7335922 | None:intergenic | 25.0% |
| ! | AATTGAAAATCCAGCTTATA+AGG | + | chr4.3:7335482-7335501 | MS.gene000407:CDS | 25.0% |
| ! | ACCGTTATATTCATTCTTAT+CGG | - | chr4.3:7333104-7333123 | None:intergenic | 25.0% |
| ! | ATTGAAAATCCAGCTTATAA+GGG | + | chr4.3:7335483-7335502 | MS.gene000407:CDS | 25.0% |
| ! | CCTTTCTTAGAAAATATGAT+TGG | - | chr4.3:7334329-7334348 | None:intergenic | 25.0% |
| ! | TAGTATAAGCCATTGATAAA+GGG | - | chr4.3:7333883-7333902 | None:intergenic | 25.0% |
| ! | TCCGATAAGAATGAATATAA+CGG | + | chr4.3:7333100-7333119 | MS.gene000407:CDS | 25.0% |
| ! | TCTTTCTCAATAGTAAACTT+GGG | - | chr4.3:7335690-7335709 | None:intergenic | 25.0% |
| ! | TTAGTATAAGCCATTGATAA+AGG | - | chr4.3:7333884-7333903 | None:intergenic | 25.0% |
| ! | TTGTTAGCATATCTTAAACA+AGG | + | chr4.3:7333995-7334014 | MS.gene000407:intron | 25.0% |
| !! | AAAAAATTCTTGTAGGTTGA+AGG | + | chr4.3:7333319-7333338 | MS.gene000407:intron | 25.0% |
| !! | ATAAGCTGGATTTTCAATTA+GGG | - | chr4.3:7335481-7335500 | None:intergenic | 25.0% |
| !! | GTTTGTTTGATGATTGAATT+TGG | + | chr4.3:7332968-7332987 | MS.gene000407:intron | 25.0% |
| !! | TATAAGCTGGATTTTCAATT+AGG | - | chr4.3:7335482-7335501 | None:intergenic | 25.0% |
| !! | TTGTTTAAGATATGCTAACA+AGG | - | chr4.3:7333996-7334015 | None:intergenic | 25.0% |
| !! | TTTTAAGCTCAAAGTAATCA+GGG | - | chr4.3:7335536-7335555 | None:intergenic | 25.0% |
| !! | TTTTTATGAGGCTTAAATTG+AGG | + | chr4.3:7333001-7333020 | MS.gene000407:intron | 25.0% |
| !!! | AAACAAACAAGAGTATTTGT+TGG | + | chr4.3:7333386-7333405 | MS.gene000407:intron | 25.0% |
| !!! | AAAGCTAAATTTTAAGGACA+AGG | - | chr4.3:7334446-7334465 | None:intergenic | 25.0% |
| !!! | AATTTGGGTTAGTAATCTTA+GGG | - | chr4.3:7335380-7335399 | None:intergenic | 25.0% |
| !!! | CATCTTCTCTCTTTTTTTTT+TGG | + | chr4.3:7332944-7332963 | MS.gene000407:intron | 25.0% |
| !!! | CCAATCATATTTTCTAAGAA+AGG | + | chr4.3:7334326-7334345 | MS.gene000407:intron | 25.0% |
| !!! | CTTTAATTTTTCAAGTGGTA+CGG | + | chr4.3:7333970-7333989 | MS.gene000407:intron | 25.0% |
| !!! | TACATGTATTTTAAGCTTGT+AGG | - | chr4.3:7335991-7336010 | None:intergenic | 25.0% |
| !!! | TCTAATTTGTTAAACACGAA+AGG | - | chr4.3:7333566-7333585 | None:intergenic | 25.0% |
| !!! | TTTTTAAGCTCAAAGTAATC+AGG | - | chr4.3:7335537-7335556 | None:intergenic | 25.0% |
| AAAATTTGCAACTCATTGTC+GGG | - | chr4.3:7335048-7335067 | None:intergenic | 30.0% | |
| AAATGCTAATGTGTTTCCTT+AGG | + | chr4.3:7333674-7333693 | MS.gene000407:intron | 30.0% | |
| AAATGGTAAAAAGCAACATG+TGG | - | chr4.3:7333821-7333840 | None:intergenic | 30.0% | |
| AACATTCCTCTCTACTTATA+AGG | - | chr4.3:7333605-7333624 | None:intergenic | 30.0% | |
| AACTATGGCCTAAAAGTAAT+TGG | + | chr4.3:7333649-7333668 | MS.gene000407:intron | 30.0% | |
| AATGCTAATGTGTTTCCTTA+GGG | + | chr4.3:7333675-7333694 | MS.gene000407:intron | 30.0% | |
| ACTCTTGAAAAGTAGTATAG+TGG | + | chr4.3:7333470-7333489 | MS.gene000407:intron | 30.0% | |
| AGATGTAATGTTTCACTTTG+TGG | + | chr4.3:7336060-7336079 | MS.gene000407:intron | 30.0% | |
| ATCAAGTCACTATAACTGAA+GGG | - | chr4.3:7334561-7334580 | None:intergenic | 30.0% | |
| CAAAATTTGCAACTCATTGT+CGG | - | chr4.3:7335049-7335068 | None:intergenic | 30.0% | |
| CTCTACTTATAAGGATGTAA+GGG | - | chr4.3:7333596-7333615 | None:intergenic | 30.0% | |
| CTCTTTCTCAATAGTAAACT+TGG | - | chr4.3:7335691-7335710 | None:intergenic | 30.0% | |
| TAAAATCATGCATAAGAAGG+AGG | - | chr4.3:7335900-7335919 | None:intergenic | 30.0% | |
| TATCAAGTCACTATAACTGA+AGG | - | chr4.3:7334562-7334581 | None:intergenic | 30.0% | |
| TATTGAGAAAGAGAAACAGA+AGG | + | chr4.3:7335698-7335717 | MS.gene000407:CDS | 30.0% | |
| TCTCTACTTATAAGGATGTA+AGG | - | chr4.3:7333597-7333616 | None:intergenic | 30.0% | |
| TCTTCATCAAGAATTTCCAA+GGG | - | chr4.3:7335249-7335268 | None:intergenic | 30.0% | |
| TGTGTAGATTCACAAATTTC+TGG | + | chr4.3:7334355-7334374 | MS.gene000407:intron | 30.0% | |
| TTACATCCTTATAAGTAGAG+AGG | + | chr4.3:7333596-7333615 | MS.gene000407:intron | 30.0% | |
| TTCTTCATCAAGAATTTCCA+AGG | - | chr4.3:7335250-7335269 | None:intergenic | 30.0% | |
| TTGTGAATTAATGGAACATG+CGG | + | chr4.3:7333177-7333196 | MS.gene000407:intron | 30.0% | |
| TTTACCATTTGCTTGTGTAA+GGG | + | chr4.3:7333831-7333850 | MS.gene000407:intron | 30.0% | |
| ! | CCATGCAAAGCTAAATTTTA+AGG | - | chr4.3:7334452-7334471 | None:intergenic | 30.0% |
| ! | TAAGCTGGATTTTCAATTAG+GGG | - | chr4.3:7335480-7335499 | None:intergenic | 30.0% |
| ! | TTTTACCATTTGCTTGTGTA+AGG | + | chr4.3:7333830-7333849 | MS.gene000407:intron | 30.0% |
| !! | ATTTGGGTTAGTAATCTTAG+GGG | - | chr4.3:7335379-7335398 | None:intergenic | 30.0% |
| !! | CAATTTGGGTTAGTAATCTT+AGG | - | chr4.3:7335381-7335400 | None:intergenic | 30.0% |
| !! | CCTTAAAATTTAGCTTTGCA+TGG | + | chr4.3:7334449-7334468 | MS.gene000407:intron | 30.0% |
| !! | GCATTTCACCAATTACTTTT+AGG | - | chr4.3:7333660-7333679 | None:intergenic | 30.0% |
| !!! | ACAAATTTCTGGTACTTTTG+TGG | + | chr4.3:7334366-7334385 | MS.gene000407:intron | 30.0% |
| !!! | AGTTGCAAATTTTGATTGAC+GGG | + | chr4.3:7335055-7335074 | MS.gene000407:CDS | 30.0% |
| !!! | GAGTTGCAAATTTTGATTGA+CGG | + | chr4.3:7335054-7335073 | MS.gene000407:CDS | 30.0% |
| !!! | GGATCTATGTTGTTTTTATG+AGG | + | chr4.3:7332989-7333008 | MS.gene000407:intron | 30.0% |
| AAAACCCTTACACAAGCAAA+TGG | - | chr4.3:7333838-7333857 | None:intergenic | 35.0% | |
| AAGAAGAATCCAGCATACAA+GGG | + | chr4.3:7335441-7335460 | MS.gene000407:CDS | 35.0% | |
| AAGACCAGACAAAAAACAGT+AGG | - | chr4.3:7335859-7335878 | None:intergenic | 35.0% | |
| AAGCATAAAAATCCGAAGAG+TGG | + | chr4.3:7334940-7334959 | MS.gene000407:CDS | 35.0% | |
| AATGCTAACAACTGCTTTCA+TGG | + | chr4.3:7334020-7334039 | MS.gene000407:intron | 35.0% | |
| ACTGTTTCCTTAGATTTGCA+TGG | + | chr4.3:7334417-7334436 | MS.gene000407:intron | 35.0% | |
| AGAATCATTGTCGAATTCCT+TGG | - | chr4.3:7334857-7334876 | None:intergenic | 35.0% | |
| AGAATTCCAACTGTGAGATT+CGG | - | chr4.3:7336144-7336163 | None:intergenic | 35.0% | |
| AGCATAAAAATCCGAAGAGT+GGG | + | chr4.3:7334941-7334960 | MS.gene000407:CDS | 35.0% | |
| AGCATACATGTAATGTCATC+TGG | + | chr4.3:7335756-7335775 | MS.gene000407:intron | 35.0% | |
| AGGACCAAACATGATAGAAT+AGG | - | chr4.3:7334881-7334900 | None:intergenic | 35.0% | |
| ATCAAATACCTTCTTCTGCA+AGG | - | chr4.3:7335931-7335950 | None:intergenic | 35.0% | |
| CAAAAACATGAACCTAGAGA+AGG | - | chr4.3:7334475-7334494 | None:intergenic | 35.0% | |
| CTTCTACGAATCATTTGATG+AGG | + | chr4.3:7333054-7333073 | MS.gene000407:CDS | 35.0% | |
| GAAACAGAAGGAAGAAGAAA+AGG | + | chr4.3:7335710-7335729 | MS.gene000407:CDS | 35.0% | |
| GAATCATTGTCGAATTCCTT+GGG | - | chr4.3:7334856-7334875 | None:intergenic | 35.0% | |
| GATTCATCCTTAAGAATCAC+AGG | - | chr4.3:7334739-7334758 | None:intergenic | 35.0% | |
| GGACCAAACATGATAGAATA+GGG | - | chr4.3:7334880-7334899 | None:intergenic | 35.0% | |
| GGCAAATTTCTTATCTTCTG+AGG | + | chr4.3:7335092-7335111 | MS.gene000407:CDS | 35.0% | |
| GTTTCTTATCTTCAGGATCT+GGG | - | chr4.3:7335152-7335171 | None:intergenic | 35.0% | |
| TATGCTGGATTCTTCTTCAT+TGG | - | chr4.3:7335438-7335457 | None:intergenic | 35.0% | |
| TATTGAGATTTGGACAATGC+AGG | + | chr4.3:7335587-7335606 | MS.gene000407:CDS | 35.0% | |
| TCAAATACCTTCTTCTGCAA+GGG | - | chr4.3:7335930-7335949 | None:intergenic | 35.0% | |
| TCTCCCTATTCTATCATGTT+TGG | + | chr4.3:7334874-7334893 | MS.gene000407:CDS | 35.0% | |
| TGTCAAGACAATAACCACAA+CGG | - | chr4.3:7336172-7336191 | None:intergenic | 35.0% | |
| TTAACACGTCCCTTTATCAA+TGG | + | chr4.3:7333871-7333890 | MS.gene000407:intron | 35.0% | |
| TTCCATATACCCTTATAAGC+TGG | - | chr4.3:7335495-7335514 | None:intergenic | 35.0% | |
| TTGCAGGATCTCATTGAAAA+GGG | + | chr4.3:7336108-7336127 | MS.gene000407:intron | 35.0% | |
| TTGTTAAACACGAAAGGAGT+CGG | - | chr4.3:7333560-7333579 | None:intergenic | 35.0% | |
| TTTGCAGGATCTCATTGAAA+AGG | + | chr4.3:7336107-7336126 | MS.gene000407:intron | 35.0% | |
| ! | AAGCTGGATTTTCAATTAGG+GGG | - | chr4.3:7335479-7335498 | None:intergenic | 35.0% |
| ! | AAGGTATCCATGCAAATCTA+AGG | - | chr4.3:7334427-7334446 | None:intergenic | 35.0% |
| ! | ATCCAGCTTATAAGGGTATA+TGG | + | chr4.3:7335490-7335509 | MS.gene000407:CDS | 35.0% |
| ! | CTCAACTCACTTTCTTCTTT+TGG | + | chr4.3:7333139-7333158 | MS.gene000407:intron | 35.0% |
| ! | GTATTTGTTGGACACATGAT+TGG | + | chr4.3:7333398-7333417 | MS.gene000407:intron | 35.0% |
| ! | GTTTTCCTTCGTATCGTATT+TGG | + | chr4.3:7336192-7336211 | MS.gene000407:CDS | 35.0% |
| ! | TCTAAAATATCTTCGACCAC+AGG | + | chr4.3:7334816-7334835 | MS.gene000407:CDS | 35.0% |
| !! | ATGAGGATTTTGATGATCGT+TGG | + | chr4.3:7333071-7333090 | MS.gene000407:CDS | 35.0% |
| !! | TGAATTCTGTGTTGATTTGC+AGG | + | chr4.3:7336092-7336111 | MS.gene000407:intron | 35.0% |
| !! | TGATTTGTTCTGTGCATTCT+AGG | + | chr4.3:7334616-7334635 | MS.gene000407:intron | 35.0% |
| !! | TTTCTGGTACTTTTGTGGAA+TGG | + | chr4.3:7334371-7334390 | MS.gene000407:intron | 35.0% |
| !!! | GTTGCAAATTTTGATTGACG+GGG | + | chr4.3:7335056-7335075 | MS.gene000407:CDS | 35.0% |
| AAAAGCAAATCTTCCTGCTG+TGG | + | chr4.3:7336021-7336040 | MS.gene000407:intron | 40.0% | |
| AAAATATCTTCGACCACAGG+AGG | + | chr4.3:7334819-7334838 | MS.gene000407:CDS | 40.0% | |
| AAGATAAGAAACCTGAGGAC+TGG | + | chr4.3:7335160-7335179 | MS.gene000407:CDS | 40.0% | |
| AAGATGAATTACCGCGTCAT+CGG | - | chr4.3:7332930-7332949 | None:intergenic | 40.0% | |
| AATGTGTTTCCTTAGGGAGT+TGG | + | chr4.3:7333681-7333700 | MS.gene000407:intron | 40.0% | |
| ACTATAACTGAAGGGAGATG+TGG | - | chr4.3:7334553-7334572 | None:intergenic | 40.0% | |
| AGATAAGAAACCTGAGGACT+GGG | + | chr4.3:7335161-7335180 | MS.gene000407:CDS | 40.0% | |
| AGCTCAAAGTAATCAGGGTT+TGG | - | chr4.3:7335531-7335550 | None:intergenic | 40.0% | |
| AGCTGCAATAGGCTCAAAAT+CGG | - | chr4.3:7335562-7335581 | None:intergenic | 40.0% | |
| AGGCTACAAAACCAGAAGAT+TGG | + | chr4.3:7335325-7335344 | MS.gene000407:CDS | 40.0% | |
| ATCCAGCATACAAGGGAAAA+TGG | + | chr4.3:7335448-7335467 | MS.gene000407:CDS | 40.0% | |
| ATTCCTTAACCAACTCCCTA+AGG | - | chr4.3:7333693-7333712 | None:intergenic | 40.0% | |
| CAATATGCACCAACTACCAA+GGG | - | chr4.3:7334508-7334527 | None:intergenic | 40.0% | |
| GAAAAGGACACTGAATCAAG+TGG | + | chr4.3:7335726-7335745 | MS.gene000407:CDS | 40.0% | |
| GAAGAAGAATCCAGCATACA+AGG | + | chr4.3:7335440-7335459 | MS.gene000407:CDS | 40.0% | |
| GAATGTTCAGACTTTAGGTG+AGG | + | chr4.3:7333618-7333637 | MS.gene000407:intron | 40.0% | |
| GAGAGGAATGTTCAGACTTT+AGG | + | chr4.3:7333613-7333632 | MS.gene000407:intron | 40.0% | |
| GCATAAAAATCCGAAGAGTG+GGG | + | chr4.3:7334942-7334961 | MS.gene000407:CDS | 40.0% | |
| GGCTACAAAACCAGAAGATT+GGG | + | chr4.3:7335326-7335345 | MS.gene000407:CDS | 40.0% | |
| GGTGAGGTGAATGTAAACTA+TGG | + | chr4.3:7333634-7333653 | MS.gene000407:intron | 40.0% | |
| GGTTTCTTATCTTCAGGATC+TGG | - | chr4.3:7335153-7335172 | None:intergenic | 40.0% | |
| TCAATACCGATAGCTGCAAT+AGG | - | chr4.3:7335573-7335592 | None:intergenic | 40.0% | |
| TCATCATCTAACCATCCTTC+AGG | - | chr4.3:7335282-7335301 | None:intergenic | 40.0% | |
| TCCTCAGGTTTCTTATCTTC+AGG | - | chr4.3:7335159-7335178 | None:intergenic | 40.0% | |
| TCCTGAAGATAAGAAACCTG+AGG | + | chr4.3:7335155-7335174 | MS.gene000407:CDS | 40.0% | |
| TCCTTCGTATCGTATTTGGT+GGG | + | chr4.3:7336196-7336215 | MS.gene000407:CDS | 40.0% | |
| TGATGAGCCTGTGATTCTTA+AGG | + | chr4.3:7334729-7334748 | MS.gene000407:CDS | 40.0% | |
| TGTTAAACACGAAAGGAGTC+GGG | - | chr4.3:7333559-7333578 | None:intergenic | 40.0% | |
| TTCCTTCGTATCGTATTTGG+TGG | + | chr4.3:7336195-7336214 | MS.gene000407:CDS | 40.0% | |
| TTTGAGCCTATTGCAGCTAT+CGG | + | chr4.3:7335564-7335583 | MS.gene000407:CDS | 40.0% | |
| ! | AATGAAGTGCACCTTGTTTG+TGG | - | chr4.3:7334917-7334936 | None:intergenic | 40.0% |
| ! | AGCTGGATTTTCAATTAGGG+GGG | - | chr4.3:7335478-7335497 | None:intergenic | 40.0% |
| ! | CAGCTATCGGTATTGAGATT+TGG | + | chr4.3:7335577-7335596 | MS.gene000407:CDS | 40.0% |
| ! | TTTCCTTAGGGAGTTGGTTA+AGG | + | chr4.3:7333687-7333706 | MS.gene000407:intron | 40.0% |
| ! | TTTTAAGCTTGTAGGCACTC+AGG | - | chr4.3:7335983-7336002 | None:intergenic | 40.0% |
| ! | TTTTTGCTCGTTAGTTCCCT+TGG | + | chr4.3:7334489-7334508 | MS.gene000407:intron | 40.0% |
| !! | TGGAAGCATTCAAAGAGTGA+GGG | + | chr4.3:7334643-7334662 | MS.gene000407:CDS | 40.0% |
| !!! | CTCTCCTACTGTTTTTTGTC+TGG | + | chr4.3:7335852-7335871 | MS.gene000407:intron | 40.0% |
| AACAACTGCTTTCATGGCAC+TGG | + | chr4.3:7334026-7334045 | MS.gene000407:intron | 45.0% | |
| AAGCTGTGAAACCTGAAGGA+TGG | + | chr4.3:7335268-7335287 | MS.gene000407:CDS | 45.0% | |
| ACGATGAAGAGGATGGTGAA+TGG | + | chr4.3:7335349-7335368 | MS.gene000407:CDS | 45.0% | |
| AGAAGATTGGGACGATGAAG+AGG | + | chr4.3:7335338-7335357 | MS.gene000407:CDS | 45.0% | |
| AGCACTGCAAAAATTCCGAG+AGG | - | chr4.3:7332854-7332873 | None:intergenic | 45.0% | |
| AGTGAATCAAATGCCACAGC+AGG | - | chr4.3:7336037-7336056 | None:intergenic | 45.0% | |
| ATAAGATTGCCGCGTCATAC+CGG | + | chr4.3:7335649-7335668 | MS.gene000407:CDS | 45.0% | |
| ATGGTTAGATGATGAGCCTG+AGG | + | chr4.3:7335287-7335306 | MS.gene000407:CDS | 45.0% | |
| ATGTTTGGTCCTGACAAGTG+TGG | + | chr4.3:7334889-7334908 | MS.gene000407:CDS | 45.0% | |
| CATCAGGCTTTACTGCACTT+GGG | - | chr4.3:7335209-7335228 | None:intergenic | 45.0% | |
| CCAATATGCACCAACTACCA+AGG | - | chr4.3:7334509-7334528 | None:intergenic | 45.0% | |
| CGATGAAGAGGATGGTGAAT+GGG | + | chr4.3:7335350-7335369 | MS.gene000407:CDS | 45.0% | |
| GAACGAAAGCGAATTCCTCT+CGG | + | chr4.3:7332836-7332855 | MS.gene000407:CDS | 45.0% | |
| GAAGAAGCTGTGAAACCTGA+AGG | + | chr4.3:7335264-7335283 | MS.gene000407:CDS | 45.0% | |
| GAGATTTGGACAATGCAGGA+TGG | + | chr4.3:7335591-7335610 | MS.gene000407:CDS | 45.0% | |
| GATTGTCTTGGGAGGGATAA+GGG | - | chr4.3:7335130-7335149 | None:intergenic | 45.0% | |
| GCTGCAATAGGCTCAAAATC+GGG | - | chr4.3:7335561-7335580 | None:intergenic | 45.0% | |
| TCAACATACTCCCCACTCTT+CGG | - | chr4.3:7334955-7334974 | None:intergenic | 45.0% | |
| TCATCAGGCTTTACTGCACT+TGG | - | chr4.3:7335210-7335229 | None:intergenic | 45.0% | |
| TCCCACCAAATACGATACGA+AGG | - | chr4.3:7336200-7336219 | None:intergenic | 45.0% | |
| TCTTCATCGTCCCAATCTTC+TGG | - | chr4.3:7335339-7335358 | None:intergenic | 45.0% | |
| TGACGGGGAACAGAAGAAAA+AGG | + | chr4.3:7335071-7335090 | MS.gene000407:CDS | 45.0% | |
| TGCAGTAAAGCCTGATGACT+GGG | + | chr4.3:7335212-7335231 | MS.gene000407:CDS | 45.0% | |
| TGGAATTCTTGTAGCCGTTG+TGG | + | chr4.3:7336155-7336174 | MS.gene000407:CDS | 45.0% | |
| TGTTTGGTCCTGACAAGTGT+GGG | + | chr4.3:7334890-7334909 | MS.gene000407:CDS | 45.0% | |
| TTCTGTGCATTCTAGGCATC+TGG | + | chr4.3:7334623-7334642 | MS.gene000407:intron | 45.0% | |
| TTGGTGGGAAGAAAAAGCCA+GGG | + | chr4.3:7336211-7336230 | MS.gene000407:CDS | 45.0% | |
| TTTCGTTCTCCCATATTCCC+TGG | - | chr4.3:7332824-7332843 | None:intergenic | 45.0% | |
| TTTGGTGGGAAGAAAAAGCC+AGG | + | chr4.3:7336210-7336229 | MS.gene000407:CDS | 45.0% | |
| ! | ACGTGAGATAGCTTGTCAGA+GGG | - | chr4.3:7335006-7335025 | None:intergenic | 45.0% |
| ! | AGTGAGGGGCATGAAGATTA+TGG | + | chr4.3:7334658-7334677 | MS.gene000407:CDS | 45.0% |
| ! | CATCATCGGAAGCATGAAGA+AGG | - | chr4.3:7332907-7332926 | None:intergenic | 45.0% |
| ! | CCTTGGTAGTTGGTGCATAT+TGG | + | chr4.3:7334506-7334525 | MS.gene000407:intron | 45.0% |
| ! | CTTTTTGCCCTTGCAGAAGA+AGG | + | chr4.3:7335920-7335939 | MS.gene000407:intron | 45.0% |
| ! | GTGAGGGGCATGAAGATTAT+GGG | + | chr4.3:7334659-7334678 | MS.gene000407:CDS | 45.0% |
| ! | TAAGGGTATATGGAAGCCTC+AGG | + | chr4.3:7335500-7335519 | MS.gene000407:CDS | 45.0% |
| ! | TCAGGATCTGGGATTGTCTT+GGG | - | chr4.3:7335141-7335160 | None:intergenic | 45.0% |
| ! | TCAGGGTTTGGAATATCCTG+AGG | - | chr4.3:7335519-7335538 | None:intergenic | 45.0% |
| ! | TCGTTAGTTCCCTTGGTAGT+TGG | + | chr4.3:7334496-7334515 | MS.gene000407:intron | 45.0% |
| ! | TTCAGGATCTGGGATTGTCT+TGG | - | chr4.3:7335142-7335161 | None:intergenic | 45.0% |
| ! | TTTGAGACTCGCCTTCAGAA+TGG | + | chr4.3:7334772-7334791 | MS.gene000407:CDS | 45.0% |
| !! | CTGGAAGCATTCAAAGAGTG+AGG | + | chr4.3:7334642-7334661 | MS.gene000407:CDS | 45.0% |
| !! | GGAAGCATTCAAAGAGTGAG+GGG | + | chr4.3:7334644-7334663 | MS.gene000407:CDS | 45.0% |
| !!! | CTTCTGGTTTTGTAGCCTCT+GGG | - | chr4.3:7335323-7335342 | None:intergenic | 45.0% |
| !!! | TCTTCTGGTTTTGTAGCCTC+TGG | - | chr4.3:7335324-7335343 | None:intergenic | 45.0% |
| !!! | TGCCATTTTCCCTTGTATGC+TGG | - | chr4.3:7335453-7335472 | None:intergenic | 45.0% |
| AAAGCCTGATGACTGGGATG+AGG | + | chr4.3:7335218-7335237 | MS.gene000407:CDS | 50.0% | |
| AAGCTTGTAGGCACTCAGGA+AGG | - | chr4.3:7335979-7335998 | None:intergenic | 50.0% | |
| AGCTTGTAGGCACTCAGGAA+GGG | - | chr4.3:7335978-7335997 | None:intergenic | 50.0% | |
| AGCTTGTCAGAGGGAACAGA+TGG | - | chr4.3:7334997-7335016 | None:intergenic | 50.0% | |
| AGCTTTGCATGGCCTTCTCT+AGG | + | chr4.3:7334460-7334479 | MS.gene000407:intron | 50.0% | |
| AGGCTTTACTGCACTTGGGT+CGG | - | chr4.3:7335205-7335224 | None:intergenic | 50.0% | |
| CACATTCGAGGCCATTCTGA+AGG | - | chr4.3:7334786-7334805 | None:intergenic | 50.0% | |
| CAGATGGGGGAAACTTGAGA+TGG | - | chr4.3:7334981-7335000 | None:intergenic | 50.0% | |
| CAGGGGCTGCTTCACAATTT+GGG | - | chr4.3:7335395-7335414 | None:intergenic | 50.0% | |
| CTGGTTGTGGTGAGTGGAAA+CGG | + | chr4.3:7335412-7335431 | MS.gene000407:CDS | 50.0% | |
| CTTCAGAATGGCCTCGAATG+TGG | + | chr4.3:7334784-7334803 | MS.gene000407:CDS | 50.0% | |
| CTTGTCAGAGGGAACAGATG+GGG | - | chr4.3:7334995-7335014 | None:intergenic | 50.0% | |
| GATATGCACCACCACATTCG+AGG | - | chr4.3:7334798-7334817 | None:intergenic | 50.0% | |
| GATTGGGACGATGAAGAGGA+TGG | + | chr4.3:7335342-7335361 | MS.gene000407:CDS | 50.0% | |
| GCTTGTCAGAGGGAACAGAT+GGG | - | chr4.3:7334996-7335015 | None:intergenic | 50.0% | |
| GGATTGTCTTGGGAGGGATA+AGG | - | chr4.3:7335131-7335150 | None:intergenic | 50.0% | |
| GTGCAGTAAAGCCTGATGAC+TGG | + | chr4.3:7335211-7335230 | MS.gene000407:CDS | 50.0% | |
| GTTTCCACTCACCACAACCA+GGG | - | chr4.3:7335413-7335432 | None:intergenic | 50.0% | |
| GTTTGGTCCTGACAAGTGTG+GGG | + | chr4.3:7334891-7334910 | MS.gene000407:CDS | 50.0% | |
| TAAGATTGCCGCGTCATACC+GGG | + | chr4.3:7335650-7335669 | MS.gene000407:CDS | 50.0% | |
| TCTGGGTCATCTATCTCCTC+AGG | - | chr4.3:7335306-7335325 | None:intergenic | 50.0% | |
| TGAGGAGATAGATGACCCAG+AGG | + | chr4.3:7335305-7335324 | MS.gene000407:CDS | 50.0% | |
| TTGTCAGAGGGAACAGATGG+GGG | - | chr4.3:7334994-7335013 | None:intergenic | 50.0% | |
| TTTCCACTCACCACAACCAG+GGG | - | chr4.3:7335412-7335431 | None:intergenic | 50.0% | |
| ! | CACGTGAGATAGCTTGTCAG+AGG | - | chr4.3:7335007-7335026 | None:intergenic | 50.0% |
| ! | GATCTGGGATTGTCTTGGGA+GGG | - | chr4.3:7335137-7335156 | None:intergenic | 50.0% |
| ACGCAGCCGAATCTCACAGT+TGG | + | chr4.3:7336135-7336154 | MS.gene000407:CDS | 55.0% | |
| CAAGTGTGGGGCCACAAACA+AGG | + | chr4.3:7334903-7334922 | MS.gene000407:CDS | 55.0% | |
| CAGAATGGCCTCGAATGTGG+TGG | + | chr4.3:7334787-7334806 | MS.gene000407:CDS | 55.0% | |
| CCAAATTGTGAAGCAGCCCC+TGG | + | chr4.3:7335393-7335412 | MS.gene000407:CDS | 55.0% | |
| CCAGGGGCTGCTTCACAATT+TGG | - | chr4.3:7335396-7335415 | None:intergenic | 55.0% | |
| CGTCATACCGGGAGACTACA+TGG | + | chr4.3:7335661-7335680 | MS.gene000407:CDS | 55.0% | |
| CGTTTCCACTCACCACAACC+AGG | - | chr4.3:7335414-7335433 | None:intergenic | 55.0% | |
| GCATCCTCATCCCAGTCATC+AGG | - | chr4.3:7335225-7335244 | None:intergenic | 55.0% | |
| GGCTTTACTGCACTTGGGTC+GGG | - | chr4.3:7335204-7335223 | None:intergenic | 55.0% | |
| GTCTTGGGAGGGATAAGGGA+AGG | - | chr4.3:7335126-7335145 | None:intergenic | 55.0% | |
| TACCGCGTCATCGGCATCAT+CGG | - | chr4.3:7332921-7332940 | None:intergenic | 55.0% | |
| TATCTTCGACCACAGGAGGC+TGG | + | chr4.3:7334823-7334842 | MS.gene000407:CDS | 55.0% | |
| TGGGCTTCCATGTAGTCTCC+CGG | - | chr4.3:7335671-7335690 | None:intergenic | 55.0% | |
| TGTAGTCTCCCGGTATGACG+CGG | - | chr4.3:7335661-7335680 | None:intergenic | 55.0% | |
| TTCCGATGATGCCGATGACG+CGG | + | chr4.3:7332916-7332935 | MS.gene000407:CDS | 55.0% | |
| TTTGTGGCCCCACACTTGTC+AGG | - | chr4.3:7334901-7334920 | None:intergenic | 55.0% | |
| ! | GGATCTGGGATTGTCTTGGG+AGG | - | chr4.3:7335138-7335157 | None:intergenic | 55.0% |
| CTGGGATGAGGATGCACCCT+TGG | + | chr4.3:7335230-7335249 | MS.gene000407:CDS | 60.0% | |
| GGTTTCCAACCAGCCTCCTG+TGG | - | chr4.3:7334835-7334854 | None:intergenic | 60.0% | |
| TCTCTCTCGTCCCAGTCCTC+AGG | - | chr4.3:7335174-7335193 | None:intergenic | 60.0% | |
| TGTGAAGCAGCCCCTGGTTG+TGG | + | chr4.3:7335399-7335418 | MS.gene000407:CDS | 60.0% | |
| TTCGACCACAGGAGGCTGGT+TGG | + | chr4.3:7334827-7334846 | MS.gene000407:CDS | 60.0% | |
| ! | GGAGGCTGGTTGGAAACCCA+AGG | + | chr4.3:7334837-7334856 | MS.gene000407:CDS | 60.0% |
| CAGCCCCTGGTTGTGGTGAG+TGG | + | chr4.3:7335406-7335425 | MS.gene000407:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 7332824 | 7336230 | 7332824 | ID=MS.gene000407 |
| chr4.3 | mRNA | 7332824 | 7336230 | 7332824 | ID=MS.gene000407.t1;Parent=MS.gene000407 |
| chr4.3 | exon | 7332824 | 7332937 | 7332824 | ID=MS.gene000407.t1.exon1;Parent=MS.gene000407.t1 |
| chr4.3 | CDS | 7332824 | 7332937 | 7332824 | ID=cds.MS.gene000407.t1;Parent=MS.gene000407.t1 |
| chr4.3 | exon | 7333052 | 7333121 | 7333052 | ID=MS.gene000407.t1.exon2;Parent=MS.gene000407.t1 |
| chr4.3 | CDS | 7333052 | 7333121 | 7333052 | ID=cds.MS.gene000407.t1;Parent=MS.gene000407.t1 |
| chr4.3 | exon | 7334638 | 7335764 | 7334638 | ID=MS.gene000407.t1.exon3;Parent=MS.gene000407.t1 |
| chr4.3 | CDS | 7334638 | 7335764 | 7334638 | ID=cds.MS.gene000407.t1;Parent=MS.gene000407.t1 |
| chr4.3 | exon | 7335936 | 7336007 | 7335936 | ID=MS.gene000407.t1.exon4;Parent=MS.gene000407.t1 |
| chr4.3 | CDS | 7335936 | 7336007 | 7335936 | ID=cds.MS.gene000407.t1;Parent=MS.gene000407.t1 |
| chr4.3 | exon | 7336114 | 7336230 | 7336114 | ID=MS.gene000407.t1.exon5;Parent=MS.gene000407.t1 |
| chr4.3 | CDS | 7336114 | 7336230 | 7336114 | ID=cds.MS.gene000407.t1;Parent=MS.gene000407.t1 |
| Gene Sequence |
| Protein sequence |
