Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001462.t1 | XP_003599303.2 | 95.5 | 290 | 13 | 0 | 1 | 290 | 91 | 380 | 1.80E-147 | 531.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001462.t1 | P71019 | 39.4 | 282 | 161 | 4 | 1 | 281 | 18 | 290 | 5.3e-47 | 189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001462.t1 | G7J0N6 | 95.5 | 290 | 13 | 0 | 1 | 290 | 91 | 380 | 1.3e-147 | 531.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001462 | MS.gene074258 | PPI |
| MS.gene001462 | MS.gene76034 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001462.t1 | MTR_3g031380 | 95.517 | 290 | 13 | 0 | 1 | 290 | 91 | 380 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001462.t1 | AT2G30200 | 86.897 | 290 | 38 | 0 | 1 | 290 | 104 | 393 | 1.32e-180 | 503 |
| MS.gene001462.t1 | AT2G30200 | 87.190 | 242 | 31 | 0 | 1 | 242 | 104 | 345 | 1.64e-148 | 421 |
Find 0 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAGAAAAATATGTAATTA+TGG | + | 20890:10887-10906 | MS.gene001462:intron | 15.0% |
| !! | AATAAAAAAACTTCTACTAT+TGG | + | 20890:9775-9794 | MS.gene001462:intron | 15.0% |
| !! | TTTAAAAAAAAACAACTCAA+AGG | - | 20890:11185-11204 | MS.gene001462:intergenic | 15.0% |
| !! | TTTATAAACAACAAATTTCA+TGG | - | 20890:10537-10556 | MS.gene001462:intergenic | 15.0% |
| !!! | AAATTGACTGTATTATATTT+TGG | + | 20890:11644-11663 | MS.gene001462:intron | 15.0% |
| !!! | ATGAAATTTGTTGTTTATAA+AGG | + | 20890:10536-10555 | MS.gene001462:intron | 15.0% |
| !!! | GTTTAAATTACAACTATTTT+TGG | + | 20890:9172-9191 | MS.gene001462:intron | 15.0% |
| !!! | TTGTTTTGTATTATGTATTT+AGG | + | 20890:9219-9238 | MS.gene001462:intron | 15.0% |
| !! | AAGTACAAAAATAATGACAT+TGG | - | 20890:9549-9568 | MS.gene001462:intergenic | 20.0% |
| !! | ACAAATCGAATTAAATACAT+GGG | - | 20890:11244-11263 | MS.gene001462:intergenic | 20.0% |
| !! | TACAAATCGAATTAAATACA+TGG | - | 20890:11245-11264 | MS.gene001462:intergenic | 20.0% |
| !! | TTTAGTATAAACGAAAATCA+AGG | + | 20890:9321-9340 | MS.gene001462:intron | 20.0% |
| !!! | AACATGGTAATCAATTTTTT+TGG | - | 20890:10797-10816 | MS.gene001462:intergenic | 20.0% |
| !!! | TTTTTTGGACAAAAAATACA+TGG | - | 20890:10782-10801 | MS.gene001462:intergenic | 20.0% |
| ! | AAACTTTAAATGACTCATAC+TGG | - | 20890:10989-11008 | MS.gene001462:intergenic | 25.0% |
| ! | AAATTACATATATGCCTCTA+TGG | - | 20890:10562-10581 | MS.gene001462:intergenic | 25.0% |
| ! | AATATCTTCTTTATTGTGTC+AGG | - | 20890:11976-11995 | MS.gene001462:intergenic | 25.0% |
| ! | AATTGAACTTCTAATGCAAT+TGG | + | 20890:12058-12077 | MS.gene001462:intron | 25.0% |
| ! | ACAAAAATAATGACATTGGA+TGG | - | 20890:9545-9564 | MS.gene001462:intergenic | 25.0% |
| ! | AGTCATTACAATCTAGTAAA+TGG | + | 20890:11027-11046 | MS.gene001462:intron | 25.0% |
| ! | ATCTCAAATATTCCTAAACT+GGG | - | 20890:9574-9593 | MS.gene001462:intergenic | 25.0% |
| ! | CAAATATTTCTTGAAACGTT+GGG | - | 20890:10865-10884 | MS.gene001462:intergenic | 25.0% |
| ! | GGAATAAAAAGAGAATAAAG+AGG | + | 20890:10446-10465 | MS.gene001462:intron | 25.0% |
| ! | GTAAATCAAGACAAAAAAAG+TGG | - | 20890:11211-11230 | MS.gene001462:intergenic | 25.0% |
| ! | GTTAACATTATCAACGAAAT+AGG | + | 20890:10336-10355 | MS.gene001462:intron | 25.0% |
| ! | GTTGGGAAAAATATGAAAAA+CGG | - | 20890:10848-10867 | MS.gene001462:intergenic | 25.0% |
| ! | TAGCAGAATTATAAAACTAG+AGG | - | 20890:12226-12245 | MS.gene001462:intergenic | 25.0% |
| ! | TCAAATATTTCTTGAAACGT+TGG | - | 20890:10866-10885 | MS.gene001462:intergenic | 25.0% |
| ! | TGACACAATAAAGAAGATAT+TGG | + | 20890:11975-11994 | MS.gene001462:CDS | 25.0% |
| ! | TTAAATGTAACAGAAGTCTA+AGG | - | 20890:9889-9908 | MS.gene001462:intergenic | 25.0% |
| ! | TTCTTGATGTATGCATTAAT+GGG | + | 20890:9249-9268 | MS.gene001462:CDS | 25.0% |
| ! | TTCTTTATGATATGACGAAA+CGG | + | 20890:9413-9432 | MS.gene001462:intron | 25.0% |
| ! | TTGTTATAATAGTTCCAGTT+GGG | - | 20890:10197-10216 | MS.gene001462:intergenic | 25.0% |
| !! | CTCTGTAATCATGATTTTAA+AGG | + | 20890:10425-10444 | MS.gene001462:intron | 25.0% |
| !!! | AATATGAGTTGGTTTGTAAT+CGG | + | 20890:10050-10069 | MS.gene001462:intron | 25.0% |
| !!! | CTGCTAACTTTTATTTTATC+TGG | + | 20890:12240-12259 | MS.gene001462:intron | 25.0% |
| !!! | CTTTAAAATCATGATTACAG+AGG | - | 20890:10427-10446 | MS.gene001462:intergenic | 25.0% |
| !!! | GACTGTATTATATTTTGGTA+GGG | + | 20890:11649-11668 | MS.gene001462:intron | 25.0% |
| !!! | TCAAGGTTGTTATTTTATTG+AGG | + | 20890:9338-9357 | MS.gene001462:intron | 25.0% |
| !!! | TGACTGTATTATATTTTGGT+AGG | + | 20890:11648-11667 | MS.gene001462:intron | 25.0% |
| AATTCTACTGTCATGGTAAA+AGG | - | 20890:10922-10941 | MS.gene001462:intergenic | 30.0% | |
| ACAATTAGAAGTTGAATCAC+TGG | + | 20890:10100-10119 | MS.gene001462:intron | 30.0% | |
| ACTGAAATTGGTGAAACTAA+GGG | + | 20890:11279-11298 | MS.gene001462:CDS | 30.0% | |
| AGATAAATGCTCTCTTATCA+GGG | - | 20890:10282-10301 | MS.gene001462:intergenic | 30.0% | |
| AGGCATTATTACTTTGCAAA+AGG | - | 20890:11792-11811 | MS.gene001462:intergenic | 30.0% | |
| ATACCATCTATGAGAAGTTT+AGG | + | 20890:11066-11085 | MS.gene001462:intron | 30.0% | |
| ATATGTAATTATGGCGTATG+TGG | + | 20890:10896-10915 | MS.gene001462:intron | 30.0% | |
| ATCATCTATACTTGATCAAC+AGG | - | 20890:9997-10016 | MS.gene001462:intergenic | 30.0% | |
| ATTGTCAAAAGAATGGACAA+AGG | + | 20890:12284-12303 | MS.gene001462:CDS | 30.0% | |
| CAACTCATATTACACTGTTA+TGG | - | 20890:10041-10060 | MS.gene001462:intergenic | 30.0% | |
| CAGTTTAGGAATATTTGAGA+TGG | + | 20890:9573-9592 | MS.gene001462:intron | 30.0% | |
| CATAACAGTGTAATATGAGT+TGG | + | 20890:10039-10058 | MS.gene001462:intron | 30.0% | |
| CATCTCAAATATTCCTAAAC+TGG | - | 20890:9575-9594 | MS.gene001462:intergenic | 30.0% | |
| CATTATTACTTTGCAAAAGG+TGG | - | 20890:11789-11808 | MS.gene001462:intergenic | 30.0% | |
| CTGAAGAAAAGCTATGAATT+GGG | + | 20890:12138-12157 | MS.gene001462:CDS | 30.0% | |
| CTTCTTGATGTATGCATTAA+TGG | + | 20890:9248-9267 | MS.gene001462:CDS | 30.0% | |
| GTTGTTATAATAGTTCCAGT+TGG | - | 20890:10198-10217 | MS.gene001462:intergenic | 30.0% | |
| TAAAATCATGATTACAGAGG+AGG | - | 20890:10424-10443 | MS.gene001462:intergenic | 30.0% | |
| TAAATACCCCAAAATCTCAT+TGG | - | 20890:9139-9158 | MS.gene001462:intergenic | 30.0% | |
| TATGCATTCTAGTGTAGAAA+AGG | - | 20890:10500-10519 | MS.gene001462:intergenic | 30.0% | |
| TCCATTTACAAACAACAGAA+AGG | + | 20890:9634-9653 | MS.gene001462:intron | 30.0% | |
| TCTCAAATATTCCTAAACTG+GGG | - | 20890:9573-9592 | MS.gene001462:intergenic | 30.0% | |
| TTTACCATGACAGTAGAATT+AGG | + | 20890:10922-10941 | MS.gene001462:intron | 30.0% | |
| ! | AAGAAAGCCAATGAGATTTT+GGG | + | 20890:9129-9148 | MS.gene001462:CDS | 30.0% |
| ! | AAGCCTTTTAATATTAGACG+GGG | + | 20890:10225-10244 | MS.gene001462:intron | 30.0% |
| ! | CAAGCCTTTTAATATTAGAC+GGG | + | 20890:10224-10243 | MS.gene001462:intron | 30.0% |
| ! | CCAAGCCTTTTAATATTAGA+CGG | + | 20890:10223-10242 | MS.gene001462:intron | 30.0% |
| ! | TAGAAACAGAATTTTGCCTA+AGG | - | 20890:11600-11619 | MS.gene001462:intergenic | 30.0% |
| ! | TCCTTTCTGTTGTTTGTAAA+TGG | - | 20890:9638-9657 | MS.gene001462:intergenic | 30.0% |
| ! | TTAGTGTTATCGATTGTGAA+TGG | + | 20890:9467-9486 | MS.gene001462:intron | 30.0% |
| ! | TTTTCCTAATTCTACTGTCA+TGG | - | 20890:10929-10948 | MS.gene001462:intergenic | 30.0% |
| !! | GTTATTTTATTGAGGTGGAA+GGG | + | 20890:9346-9365 | MS.gene001462:intron | 30.0% |
| !! | TTATTTTATCTGGACTCTTC+AGG | + | 20890:12250-12269 | MS.gene001462:intron | 30.0% |
| !!! | AGGTTGTTATTTTATTGAGG+TGG | + | 20890:9341-9360 | MS.gene001462:intron | 30.0% |
| !!! | TGTTATTTTATTGAGGTGGA+AGG | + | 20890:9345-9364 | MS.gene001462:intron | 30.0% |
| AAAGAAGATATTGGCACAAC+AGG | + | 20890:11984-12003 | MS.gene001462:CDS | 35.0% | |
| ACTCTCAAGTCTCAAATTTC+TGG | - | 20890:9962-9981 | MS.gene001462:intergenic | 35.0% | |
| AGAAAGCAAAGAATCTGCAA+TGG | + | 20890:9491-9510 | MS.gene001462:intron | 35.0% | |
| AGGCATAAAAGGAATAGAAG+TGG | + | 20890:11690-11709 | MS.gene001462:CDS | 35.0% | |
| ATAACATATCCTCAGTGTGT+TGG | + | 20890:9687-9706 | MS.gene001462:intron | 35.0% | |
| ATTTATGTGCAAAACCACAC+AGG | - | 20890:11146-11165 | MS.gene001462:intergenic | 35.0% | |
| CAGGTTCCATAAAACTAGTA+TGG | - | 20890:11858-11877 | MS.gene001462:intergenic | 35.0% | |
| CATAAAAGGAATAGAAGTGG+TGG | + | 20890:11693-11712 | MS.gene001462:CDS | 35.0% | |
| CCGTCTAATATTAAAAGGCT+TGG | - | 20890:10226-10245 | MS.gene001462:intergenic | 35.0% | |
| CTGAAATTGGTGAAACTAAG+GGG | + | 20890:11280-11299 | MS.gene001462:CDS | 35.0% | |
| CTGCATGATGAAAAAATCAG+TGG | - | 20890:9613-9632 | MS.gene001462:intergenic | 35.0% | |
| GAATTCAACAGTTATCAGTC+AGG | + | 20890:9286-9305 | MS.gene001462:CDS | 35.0% | |
| GACTGAAATTGGTGAAACTA+AGG | + | 20890:11278-11297 | MS.gene001462:CDS | 35.0% | |
| GAGAAGCAGTAGAAAAAACA+TGG | - | 20890:10813-10832 | MS.gene001462:intergenic | 35.0% | |
| GAGATAAATGCTCTCTTATC+AGG | - | 20890:10283-10302 | MS.gene001462:intergenic | 35.0% | |
| GATTCTGTTGATGTTTCATG+TGG | + | 20890:10677-10696 | MS.gene001462:CDS | 35.0% | |
| GCTATTATATTTCACCCAAC+TGG | + | 20890:10180-10199 | MS.gene001462:intron | 35.0% | |
| GCTGAAGAAAAGCTATGAAT+TGG | + | 20890:12137-12156 | MS.gene001462:CDS | 35.0% | |
| GGGAAAAATATGAAAAACGG+AGG | - | 20890:10845-10864 | MS.gene001462:intergenic | 35.0% | |
| GTAACCATTGTTCTTTATCC+AGG | + | 20890:11406-11425 | MS.gene001462:intron | 35.0% | |
| GTTGTTTATAAAGGCCATAG+AGG | + | 20890:10545-10564 | MS.gene001462:intron | 35.0% | |
| TAATGACATTGGATGGAATG+TGG | - | 20890:9538-9557 | MS.gene001462:intergenic | 35.0% | |
| TATGTTAAGTGACCCAACTA+CGG | + | 20890:10958-10977 | MS.gene001462:intron | 35.0% | |
| TCCAACACAAAAGACATAAG+TGG | + | 20890:12030-12049 | MS.gene001462:intron | 35.0% | |
| TCCATTGAGATTCAAGAACA+CGG | - | 20890:12201-12220 | MS.gene001462:intergenic | 35.0% | |
| TGCTGGAATTGTCAAAAGAA+TGG | + | 20890:12277-12296 | MS.gene001462:CDS | 35.0% | |
| TGGAAATGACTGGTATTCTT+GGG | - | 20890:11927-11946 | MS.gene001462:intergenic | 35.0% | |
| TTGGAAATGACTGGTATTCT+TGG | - | 20890:11928-11947 | MS.gene001462:intergenic | 35.0% | |
| TTTATGTGCAAAACCACACA+GGG | - | 20890:11145-11164 | MS.gene001462:intergenic | 35.0% | |
| ! | ACCACTTATGTCTTTTGTGT+TGG | - | 20890:12034-12053 | MS.gene001462:intergenic | 35.0% |
| ! | AGAAAGCCAATGAGATTTTG+GGG | + | 20890:9130-9149 | MS.gene001462:CDS | 35.0% |
| ! | CAAGAAAGCCAATGAGATTT+TGG | + | 20890:9128-9147 | MS.gene001462:CDS | 35.0% |
| ! | GTAATAATGCCTTTTCCTCA+TGG | + | 20890:11800-11819 | MS.gene001462:intron | 35.0% |
| ! | GTTGAATTCAGCTTTTCCTT+CGG | - | 20890:9275-9294 | MS.gene001462:intergenic | 35.0% |
| ! | TTTTGTACTTTCCCCAGTTT+AGG | + | 20890:9559-9578 | MS.gene001462:intron | 35.0% |
| !! | CGATTTGTAAGCTTTGAAGA+TGG | + | 20890:11256-11275 | MS.gene001462:intron | 35.0% |
| !! | CTTTGAAGATGGACTGAAAT+TGG | + | 20890:11267-11286 | MS.gene001462:CDS | 35.0% |
| !! | GGTGCTGATATTGAAAACAT+CGG | + | 20890:12305-12324 | MS.gene001462:CDS | 35.0% |
| !! | GTGTGGTTTTGCACATAAAT+TGG | + | 20890:11146-11165 | MS.gene001462:intron | 35.0% |
| !!! | ATCTGGCTTTTAACAACCTT+AGG | + | 20890:11581-11600 | MS.gene001462:intron | 35.0% |
| !!! | CGCTTTCCATACTAGTTTTA+TGG | + | 20890:11849-11868 | MS.gene001462:CDS | 35.0% |
| AAAAGCTATGAATTGGGACC+TGG | + | 20890:12144-12163 | MS.gene001462:CDS | 40.0% | |
| AGCAAGACTTGTGACATACA+GGG | - | 20890:10612-10631 | MS.gene001462:intergenic | 40.0% | |
| AGCTGACAAGCTGAAAACAA+AGG | - | 20890:11092-11111 | MS.gene001462:intergenic | 40.0% | |
| AGGCCTAAACTTCTCATAGA+TGG | - | 20890:11072-11091 | MS.gene001462:intergenic | 40.0% | |
| AGGTTACTTACCCTGTTCAA+TGG | + | 20890:12082-12101 | MS.gene001462:intron | 40.0% | |
| AGTGAAGACTCTTCTATCCA+AGG | + | 20890:12113-12132 | MS.gene001462:CDS | 40.0% | |
| ATCATTCATCCAACACACTG+AGG | - | 20890:9699-9718 | MS.gene001462:intergenic | 40.0% | |
| ATGATTACAGAGGAGGTCTA+AGG | - | 20890:10417-10436 | MS.gene001462:intergenic | 40.0% | |
| ATGTTAAGTGACCCAACTAC+GGG | + | 20890:10959-10978 | MS.gene001462:intron | 40.0% | |
| ATTGTGTCAGGATCTGTATG+TGG | - | 20890:11964-11983 | MS.gene001462:intergenic | 40.0% | |
| CAGCCCCGTCTAATATTAAA+AGG | - | 20890:10231-10250 | MS.gene001462:intergenic | 40.0% | |
| CCAATTACCTATGTCCAGTA+AGG | + | 20890:11549-11568 | MS.gene001462:intron | 40.0% | |
| CCTTACTGGACATAGGTAAT+TGG | - | 20890:11552-11571 | MS.gene001462:intergenic | 40.0% | |
| CGTAAACTTTCTACCTTTCC+AGG | - | 20890:12165-12184 | MS.gene001462:intergenic | 40.0% | |
| GAACTTCTAATGCAATTGGC+AGG | + | 20890:12062-12081 | MS.gene001462:intron | 40.0% | |
| GAATCACTGGAAATCACTTC+TGG | + | 20890:10113-10132 | MS.gene001462:intron | 40.0% | |
| GCATCCTGGATAAAGAACAA+TGG | - | 20890:11413-11432 | MS.gene001462:intergenic | 40.0% | |
| GCATTTACGTTGGAAATGAC+TGG | - | 20890:11937-11956 | MS.gene001462:intergenic | 40.0% | |
| GGAAATGACTGGTATTCTTG+GGG | - | 20890:11926-11945 | MS.gene001462:intergenic | 40.0% | |
| GGTCACTTAACATATCCACT+CGG | - | 20890:10952-10971 | MS.gene001462:intergenic | 40.0% | |
| GGTTACTTACCCTGTTCAAT+GGG | + | 20890:12083-12102 | MS.gene001462:intron | 40.0% | |
| GTAGAATTAGGAAAACCGAG+TGG | + | 20890:10934-10953 | MS.gene001462:intron | 40.0% | |
| GTGAAGACTCTTCTATCCAA+GGG | + | 20890:12114-12133 | MS.gene001462:CDS | 40.0% | |
| GTTTCATGTGGTTTGAGCTT+AGG | + | 20890:10689-10708 | MS.gene001462:CDS | 40.0% | |
| TATGTCCAGTAAGGTTCTTG+AGG | + | 20890:11558-11577 | MS.gene001462:intron | 40.0% | |
| TCAAGAACCTTACTGGACAT+AGG | - | 20890:11559-11578 | MS.gene001462:intergenic | 40.0% | |
| TCCGTGTTCTTGAATCTCAA+TGG | + | 20890:12197-12216 | MS.gene001462:intron | 40.0% | |
| TGAAAAACGGAGGCAATGAA+AGG | - | 20890:10835-10854 | MS.gene001462:intergenic | 40.0% | |
| TGAAGACTCTTCTATCCAAG+GGG | + | 20890:12115-12134 | MS.gene001462:CDS | 40.0% | |
| TTGTACAAAACTGCAGCAGA+AGG | - | 20890:9111-9130 | MS.gene001462:intergenic | 40.0% | |
| ! | ATAATGCCTTTTCCTCATGG+TGG | + | 20890:11803-11822 | MS.gene001462:intron | 40.0% |
| ! | ATTTTATTGAGGTGGAAGGG+TGG | + | 20890:9349-9368 | MS.gene001462:intron | 40.0% |
| ! | CTTTTAATATTAGACGGGGC+TGG | + | 20890:10229-10248 | MS.gene001462:intron | 40.0% |
| ! | TTCAAGAACACGGAGAGTAT+AGG | - | 20890:12191-12210 | MS.gene001462:intergenic | 40.0% |
| !! | ACTGTTGTTTCCCATTGAAC+AGG | - | 20890:12096-12115 | MS.gene001462:intergenic | 40.0% |
| !! | CTGTTGTTTCCCATTGAACA+GGG | - | 20890:12095-12114 | MS.gene001462:intergenic | 40.0% |
| ACTACCACAGATTACCTGCA+TGG | - | 20890:11311-11330 | MS.gene001462:intergenic | 45.0% | |
| AGCCAAAGCGAAGTCTTTCA+AGG | + | 20890:11717-11736 | MS.gene001462:CDS | 45.0% | |
| AGCCTTGAAAGACTTCGCTT+TGG | - | 20890:11722-11741 | MS.gene001462:intergenic | 45.0% | |
| ATACTGGAAACCCCGTAGTT+GGG | - | 20890:10973-10992 | MS.gene001462:intergenic | 45.0% | |
| ATCTGAACCTTCTCAGCTTC+AGG | - | 20890:11527-11546 | MS.gene001462:intergenic | 45.0% | |
| ATTGGATGGAATGTGGTGCA+GGG | - | 20890:9531-9550 | MS.gene001462:intergenic | 45.0% | |
| CAGATCCTCAAGAACCTTAC+TGG | - | 20890:11566-11585 | MS.gene001462:intergenic | 45.0% | |
| CAGCAAGACTTGTGACATAC+AGG | - | 20890:10613-10632 | MS.gene001462:intergenic | 45.0% | |
| CAGTAAGGTTCTTGAGGATC+TGG | + | 20890:11564-11583 | MS.gene001462:intron | 45.0% | |
| CGAAACGGCATGAAGTTAAG+TGG | + | 20890:9428-9447 | MS.gene001462:intron | 45.0% | |
| CTATGAATTGGGACCTGGAA+AGG | + | 20890:12149-12168 | MS.gene001462:CDS | 45.0% | |
| GAAGTCTTTCAAGGCTCGAA+TGG | + | 20890:11726-11745 | MS.gene001462:CDS | 45.0% | |
| GATGCTGCTGATGCTACTAA+AGG | + | 20890:11428-11447 | MS.gene001462:CDS | 45.0% | |
| GCTTGTCAGCTTGTAGCATA+TGG | + | 20890:11101-11120 | MS.gene001462:intron | 45.0% | |
| GGCTGAAGCAGAGAATTAGA+TGG | - | 20890:10587-10606 | MS.gene001462:intergenic | 45.0% | |
| TAGGGAAACTATGCTGTCTC+TGG | + | 20890:11667-11686 | MS.gene001462:intron | 45.0% | |
| TATTGGCACAACAGGTATGC+AGG | + | 20890:11992-12011 | MS.gene001462:intron | 45.0% | |
| TCACTGGAAATCACTTCTGG+TGG | + | 20890:10116-10135 | MS.gene001462:intron | 45.0% | |
| TGTTAAGTGACCCAACTACG+GGG | + | 20890:10960-10979 | MS.gene001462:intron | 45.0% | |
| TTGCTGCTGTTGAGCTACTT+CGG | + | 20890:10627-10646 | MS.gene001462:CDS | 45.0% | |
| ! | ATAGCTTTTCTTCAGCCCCT+TGG | - | 20890:12133-12152 | MS.gene001462:intergenic | 45.0% |
| ! | ATGTGGCAGAGCATTTACGT+TGG | - | 20890:11947-11966 | MS.gene001462:intergenic | 45.0% |
| ! | CTTAGGAGAGTATACTGCTC+TGG | + | 20890:10706-10725 | MS.gene001462:CDS | 45.0% |
| ! | TCTTGGGGTTCTAATGTCTG+TGG | - | 20890:11911-11930 | MS.gene001462:intergenic | 45.0% |
| ! | TGGACTCTTCAGGTTATTGC+TGG | + | 20890:12260-12279 | MS.gene001462:intron | 45.0% |
| ! | TGTATGCATTAATGGGCCGA+AGG | + | 20890:9256-9275 | MS.gene001462:CDS | 45.0% |
| !! | GAAGAAGTATCTTCCCTGTG+TGG | + | 20890:11129-11148 | MS.gene001462:intron | 45.0% |
| !! | TAAAGGTGCCATGGTTAGTG+TGG | + | 20890:11445-11464 | MS.gene001462:CDS | 45.0% |
| !! | TGATGCTACTAAAGGTGCCA+TGG | + | 20890:11436-11455 | MS.gene001462:CDS | 45.0% |
| AGACTTGTGACATACAGGGC+AGG | - | 20890:10608-10627 | MS.gene001462:intergenic | 50.0% | |
| AGCTTCAGGCACTTCCTGAT+TGG | - | 20890:11513-11532 | MS.gene001462:intergenic | 50.0% | |
| ATACTGCTCTGGCGTTTGCT+GGG | + | 20890:10717-10736 | MS.gene001462:CDS | 50.0% | |
| CAGTCCTACCACACTAACCA+TGG | - | 20890:11456-11475 | MS.gene001462:intergenic | 50.0% | |
| CATACTGGAAACCCCGTAGT+TGG | - | 20890:10974-10993 | MS.gene001462:intergenic | 50.0% | |
| CATGGTTAGTGTGGTAGGAC+TGG | + | 20890:11454-11473 | MS.gene001462:CDS | 50.0% | |
| CATTGGATGGAATGTGGTGC+AGG | - | 20890:9532-9551 | MS.gene001462:intergenic | 50.0% | |
| GAAGCCATGCAGGTAATCTG+TGG | + | 20890:11304-11323 | MS.gene001462:intron | 50.0% | |
| GCTTCCAATCTTGACACTGC+AGG | - | 20890:11877-11896 | MS.gene001462:intergenic | 50.0% | |
| GGAAACTATGCTGTCTCTGG+AGG | + | 20890:11670-11689 | MS.gene001462:CDS | 50.0% | |
| GGAACCTGCAGTGTCAAGAT+TGG | + | 20890:11870-11889 | MS.gene001462:CDS | 50.0% | |
| GTGCTCAAGTGCAGACAATG+CGG | - | 20890:10374-10393 | MS.gene001462:intergenic | 50.0% | |
| GTTGTGTGATGCAGCCAATC+AGG | + | 20890:11496-11515 | MS.gene001462:CDS | 50.0% | |
| TAGTAGCATCAGCAGCATCC+TGG | - | 20890:11427-11446 | MS.gene001462:intergenic | 50.0% | |
| TATACTGCTCTGGCGTTTGC+TGG | + | 20890:10716-10735 | MS.gene001462:CDS | 50.0% | |
| TGCTGCTGTTGAGCTACTTC+GGG | + | 20890:10628-10647 | MS.gene001462:CDS | 50.0% | |
| ! | GCTGTCTCTGGAGGCATAAA+AGG | + | 20890:11679-11698 | MS.gene001462:CDS | 50.0% |
| ! | TACAGAGGAGGTCTAAGGTC+TGG | - | 20890:10412-10431 | MS.gene001462:intergenic | 50.0% |
| AAGGTCTGGTGAGGAGGGAA+TGG | - | 20890:10398-10417 | MS.gene001462:intergenic | 55.0% | |
| ACTAAGGGGTGAAGCCATGC+AGG | + | 20890:11294-11313 | MS.gene001462:CDS | 55.0% | |
| CACCTGCCACCATGAGGAAA+AGG | - | 20890:11812-11831 | MS.gene001462:intergenic | 55.0% | |
| GGTAGGACTGGACTCAGAGA+AGG | + | 20890:11466-11485 | MS.gene001462:CDS | 55.0% | |
| TGGCTGCATCACACAACTGC+TGG | - | 20890:11493-11512 | MS.gene001462:intergenic | 55.0% | |
| ! | AGGAGGTCTAAGGTCTGGTG+AGG | - | 20890:10407-10426 | MS.gene001462:intergenic | 55.0% |
| ! | AGGTCTAAGGTCTGGTGAGG+AGG | - | 20890:10404-10423 | MS.gene001462:intergenic | 55.0% |
| ! | GGTCTAAGGTCTGGTGAGGA+GGG | - | 20890:10403-10422 | MS.gene001462:intergenic | 55.0% |
| ! | GGTGCCATGGTTAGTGTGGT+AGG | + | 20890:11449-11468 | MS.gene001462:CDS | 55.0% |
| ! | TACTGCTCTGGCGTTTGCTG+GGG | + | 20890:10718-10737 | MS.gene001462:CDS | 55.0% |
| ! | TGCCTTTTCCTCATGGTGGC+AGG | + | 20890:11807-11826 | MS.gene001462:intron | 55.0% |
| !! | ATTAGACGGGGCTGGCTACA+TGG | + | 20890:10237-10256 | MS.gene001462:intron | 55.0% |
| !! | GGAAGTGCCTGAAGCTGAGA+AGG | + | 20890:11517-11536 | MS.gene001462:CDS | 55.0% |
| GAGCTACTTCGGGCACGTGA+GGG | + | 20890:10638-10657 | MS.gene001462:CDS | 60.0% | |
| TGAGCTACTTCGGGCACGTG+AGG | + | 20890:10637-10656 | MS.gene001462:CDS | 60.0% | |
| ! | TGGCGTTTGCTGGGGCTTTC+AGG | + | 20890:10726-10745 | MS.gene001462:CDS | 60.0% |
| CTACTTCGGGCACGTGAGGG+AGG | + | 20890:10641-10660 | MS.gene001462:CDS | 65.0% | |
| !! | GGAAAGCGCCTGCAACAGCC+AGG | - | 20890:11837-11856 | MS.gene001462:intergenic | 65.0% |
| CAGGCGCACCTGCCACCATG+AGG | - | 20890:11818-11837 | MS.gene001462:intergenic | 70.0% | |
| CAGGTGCGCCTGGCTGTTGC+AGG | + | 20890:11826-11845 | MS.gene001462:intron | 70.0% | |
| CTCATGGTGGCAGGTGCGCC+TGG | + | 20890:11816-11835 | MS.gene001462:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 20890 | gene | 9084 | 12334 | 9084 | ID=MS.gene001462 |
| 20890 | mRNA | 9084 | 12334 | 9084 | ID=MS.gene001462.t1;Parent=MS.gene001462 |
| 20890 | exon | 9084 | 9151 | 9084 | ID=MS.gene001462.t1.exon1;Parent=MS.gene001462.t1 |
| 20890 | CDS | 9084 | 9151 | 9084 | ID=cds.MS.gene001462.t1;Parent=MS.gene001462.t1 |
| 20890 | exon | 9241 | 9307 | 9241 | ID=MS.gene001462.t1.exon2;Parent=MS.gene001462.t1 |
| 20890 | CDS | 9241 | 9307 | 9241 | ID=cds.MS.gene001462.t1;Parent=MS.gene001462.t1 |
| 20890 | exon | 10605 | 10747 | 10605 | ID=MS.gene001462.t1.exon3;Parent=MS.gene001462.t1 |
| 20890 | CDS | 10605 | 10747 | 10605 | ID=cds.MS.gene001462.t1;Parent=MS.gene001462.t1 |
| 20890 | exon | 11267 | 11315 | 11267 | ID=MS.gene001462.t1.exon4;Parent=MS.gene001462.t1 |
| 20890 | CDS | 11267 | 11315 | 11267 | ID=cds.MS.gene001462.t1;Parent=MS.gene001462.t1 |
| 20890 | exon | 11428 | 11565 | 11428 | ID=MS.gene001462.t1.exon5;Parent=MS.gene001462.t1 |
| 20890 | CDS | 11428 | 11565 | 11428 | ID=cds.MS.gene001462.t1;Parent=MS.gene001462.t1 |
| 20890 | exon | 11670 | 11750 | 11670 | ID=MS.gene001462.t1.exon6;Parent=MS.gene001462.t1 |
| 20890 | CDS | 11670 | 11750 | 11670 | ID=cds.MS.gene001462.t1;Parent=MS.gene001462.t1 |
| 20890 | exon | 11829 | 12005 | 11829 | ID=MS.gene001462.t1.exon7;Parent=MS.gene001462.t1 |
| 20890 | CDS | 11829 | 12005 | 11829 | ID=cds.MS.gene001462.t1;Parent=MS.gene001462.t1 |
| 20890 | exon | 12084 | 12170 | 12084 | ID=MS.gene001462.t1.exon8;Parent=MS.gene001462.t1 |
| 20890 | CDS | 12084 | 12170 | 12084 | ID=cds.MS.gene001462.t1;Parent=MS.gene001462.t1 |
| 20890 | exon | 12272 | 12334 | 12272 | ID=MS.gene001462.t1.exon9;Parent=MS.gene001462.t1 |
| 20890 | CDS | 12272 | 12334 | 12272 | ID=cds.MS.gene001462.t1;Parent=MS.gene001462.t1 |
| Gene Sequence |
| Protein sequence |
