AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001546

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001546.t1 MTR_3g101030 78.370 319 53 2 56 358 111 429 2.41e-177 499
MS.gene001546.t1 MTR_3g101010 80.656 305 57 1 56 358 85 389 2.80e-169 477
MS.gene001546.t1 MTR_3g101050 85.385 260 34 3 101 357 139 397 7.54e-154 438
MS.gene001546.t1 MTR_3g018740 68.421 304 91 2 56 356 85 386 1.40e-143 412
MS.gene001546.t1 MTR_4g045707 67.647 306 93 3 56 358 86 388 1.14e-141 407
MS.gene001546.t1 MTR_8g027395 66.667 303 95 2 58 358 99 397 5.32e-140 403
MS.gene001546.t1 MTR_8g461160 64.918 305 103 2 56 356 88 392 1.34e-138 399
MS.gene001546.t1 MTR_3g100995 74.902 255 63 1 104 358 11 264 3.35e-138 394
MS.gene001546.t1 MTR_4g088525 64.474 304 102 2 56 357 69 368 5.42e-135 389
MS.gene001546.t1 MTR_8g027420 64.686 303 90 3 58 358 88 375 2.00e-133 385
MS.gene001546.t1 MTR_2g046030 62.928 321 109 4 44 356 68 386 1.91e-131 381
MS.gene001546.t1 MTR_7g451890 62.215 307 112 2 56 358 96 402 8.89e-131 380
MS.gene001546.t1 MTR_2g045980 62.617 321 110 4 44 356 68 386 9.00e-131 379
MS.gene001546.t1 MTR_3g101180 63.666 311 103 3 56 356 88 398 9.58e-131 380
MS.gene001546.t1 MTR_7g050810 61.415 311 108 3 56 358 98 404 6.98e-130 378
MS.gene001546.t1 MTR_7g047780 62.215 307 112 2 56 358 96 402 1.01e-127 372
MS.gene001546.t1 MTR_7g050750 60.586 307 117 2 56 358 90 396 6.29e-126 367
MS.gene001546.t1 MTR_3g101130 60.526 304 117 2 56 358 88 389 1.11e-125 367
MS.gene001546.t1 MTR_3g048000 60.984 305 96 4 56 357 107 391 2.76e-125 365
MS.gene001546.t1 MTR_3g101200 60.308 325 121 4 34 356 72 390 1.10e-124 364
MS.gene001546.t1 MTR_4g088535 63.123 301 89 4 58 356 89 369 4.93e-124 362
MS.gene001546.t1 MTR_3g018747 68.462 260 64 3 100 356 9 253 2.85e-120 348
MS.gene001546.t1 MTR_3g015620 58.170 306 100 5 56 356 96 378 2.10e-110 327
MS.gene001546.t1 MTR_3g102920 57.003 307 90 6 56 357 140 409 9.48e-104 311
MS.gene001546.t1 MTR_3g015760 58.123 277 106 4 85 356 8 279 1.37e-98 293
MS.gene001546.t1 MTR_3g101190 49.383 324 97 4 37 358 54 312 4.14e-92 278
MS.gene001546.t1 MTR_3g111160 68.095 210 62 2 152 358 13 220 5.86e-90 269
MS.gene001546.t1 MTR_3g101110 59.833 239 64 4 100 332 68 280 1.72e-85 260
MS.gene001546.t1 MTR_3g100520 59.910 222 72 3 141 358 1 209 3.74e-85 256
MS.gene001546.t1 MTR_3g099970 66.154 195 49 2 100 293 20 198 8.70e-83 250
MS.gene001546.t1 MTR_3g100010 53.992 263 73 2 56 285 97 344 9.13e-82 253
MS.gene001546.t1 MTR_2g046410 64.532 203 64 3 160 356 147 347 4.52e-80 249
MS.gene001546.t1 MTR_7g050830 53.043 230 77 2 58 267 100 318 1.09e-77 242
MS.gene001546.t1 MTR_3g101020 66.486 185 37 2 174 358 1 160 6.48e-77 234
MS.gene001546.t1 MTR_3g114310 44.051 311 159 9 59 358 104 410 5.69e-70 225
MS.gene001546.t1 MTR_3g101150 61.392 158 55 2 206 357 1 158 1.81e-59 189
MS.gene001546.t1 MTR_3g102870 57.143 161 67 1 163 321 1 161 6.51e-57 183
MS.gene001546.t1 MTR_3g111150 69.444 108 29 1 51 154 46 153 3.88e-46 155
MS.gene001546.t1 MTR_3g101140 63.077 65 23 1 295 358 52 116 2.62e-16 74.7
MS.gene001546.t1 MTR_3g100990 45.714 70 37 1 56 125 85 153 9.51e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001546.t1 AT1G47710 52.805 303 139 2 58 356 88 390 2.09e-112 333
MS.gene001546.t1 AT1G47710 52.805 303 139 2 58 356 115 417 5.56e-112 333
MS.gene001546.t1 AT3G45220 50.654 306 134 5 61 355 91 390 3.98e-99 299
MS.gene001546.t1 AT2G25240 50.498 301 138 5 61 355 87 382 1.94e-95 289
MS.gene001546.t1 AT2G26390 49.505 303 139 5 62 355 89 386 3.79e-94 286
MS.gene001546.t1 AT1G62170 42.904 303 150 3 57 357 152 433 4.38e-78 246
MS.gene001546.t1 AT2G14540 46.865 303 134 4 58 355 117 397 1.16e-76 242
MS.gene001546.t1 AT1G64030 45.875 303 139 5 58 355 89 371 5.04e-76 239
MS.gene001546.t1 AT2G35580 43.046 302 150 5 58 355 88 371 1.36e-74 235
MS.gene001546.t1 AT1G62170 38.690 336 150 4 57 357 152 466 4.04e-71 229
MS.gene001546.t1 AT1G64010 46.759 216 93 4 141 355 1 195 2.15e-60 193
MS.gene001546.t1 AT1G64010 46.766 201 85 4 156 355 2 181 2.32e-54 177
MS.gene001546.t1 AT1G62160 39.683 189 88 5 174 357 53 220 2.31e-34 126
MS.gene001546.t1 AT1G63280 51.304 115 52 2 100 212 8 120 1.96e-31 115
MS.gene001546.t1 AT1G51330 48.649 111 54 2 99 206 30 140 1.47e-22 94.0

Find 84 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:+68945595 MS.gene001546:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:+68945494 MS.gene001546:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:-68945763 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:+68945999 MS.gene001546:CDS
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:+68945925 MS.gene001546:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:-68945138 None:intergenic
CAGGTGCTCAATCCACTTGC+TGG 0.322335 7.2:+68946234 MS.gene001546:CDS
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:-68945924 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:+68945834 MS.gene001546:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:-68945497 None:intergenic
TTTCTTCCAAATGCAAAAGA+TGG 0.344851 7.2:+68945808 MS.gene001546:CDS
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:+68945226 MS.gene001546:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:+68945899 MS.gene001546:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:-68945925 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:-68946094 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:-68945656 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:+68946210 MS.gene001546:CDS
AACATGGTGCTCCCGCAGGC+GGG 0.401500 7.2:+68945195 MS.gene001546:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:-68945259 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:-68945260 None:intergenic
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:-68945273 None:intergenic
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:+68945672 MS.gene001546:CDS
ATTAAAGAACTTCTTCCTCT+AGG 0.441074 7.2:+68945541 MS.gene001546:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:-68945669 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:+68946215 MS.gene001546:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:+68945882 MS.gene001546:CDS
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:+68946069 MS.gene001546:CDS
TCTATAATCATAAACAAGAA+AGG 0.454328 7.2:-68946180 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:+68945082 MS.gene001546:CDS
TTAAAGAACTTCTTCCTCTA+GGG 0.473973 7.2:+68945542 MS.gene001546:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:+68945264 MS.gene001546:CDS
ATAGATGAGGCCCCGCCTGC+GGG 0.479679 7.2:-68945206 None:intergenic
TTCTTCCAAATGCAAAAGAT+GGG 0.486946 7.2:+68945809 MS.gene001546:CDS
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:-68945835 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:+68945227 MS.gene001546:CDS
GTGTTGCAGTAACTCAGATT+CGG 0.491692 7.2:-68945860 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:+68945073 MS.gene001546:CDS
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:+68945495 MS.gene001546:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:-68945133 None:intergenic
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:-68945759 None:intergenic
AGTTGTTGTTGTGGGGCCCT+CGG 0.500388 7.2:-68945098 None:intergenic
TGCAGTCAGTAGCAGTGGCA+TGG 0.511284 7.2:+68946122 MS.gene001546:CDS
ATGATTATAGAAGAATTGAC+TGG 0.513683 7.2:+68946192 MS.gene001546:CDS
ACATGGTGCTCCCGCAGGCG+GGG 0.513764 7.2:+68945196 MS.gene001546:CDS
CTATAATCATAAACAAGAAA+GGG 0.513814 7.2:-68946179 None:intergenic
AGTTGAGAAGTTGTTGTTGT+GGG 0.516998 7.2:-68945106 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:-68946150 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:-68945055 None:intergenic
CAACATGGTGCTCCCGCAGG+CGG 0.531684 7.2:+68945194 MS.gene001546:CDS
GCAGTCAGTAGCAGTGGCAT+GGG 0.532869 7.2:+68946123 MS.gene001546:CDS
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:+68945754 MS.gene001546:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:+68945081 MS.gene001546:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:+68945602 MS.gene001546:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:-68945130 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:-68945168 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:-68945162 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.547156 7.2:+68945958 MS.gene001546:CDS
CCTCATCTATCTTTCGTCGA+TGG 0.547628 7.2:+68945219 MS.gene001546:CDS
CACTAAAATCACCCAGCAAG+TGG 0.552425 7.2:-68946246 None:intergenic
AGGTGCTCAATCCACTTGCT+GGG 0.552433 7.2:+68946235 MS.gene001546:CDS
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:-68945889 None:intergenic
CTACAACATGGTGCTCCCGC+AGG 0.564964 7.2:+68945191 MS.gene001546:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:+68945889 MS.gene001546:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:+68945320 MS.gene001546:CDS
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:-68945991 None:intergenic
GTTGAGAAGTTGTTGTTGTG+GGG 0.589681 7.2:-68945105 None:intergenic
AGCACCATGTTGTAGAATGA+CGG 0.592151 7.2:-68945183 None:intergenic
AAGTTGAGAAGTTGTTGTTG+TGG 0.601825 7.2:-68945107 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:-68945147 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:+68945951 MS.gene001546:CDS
GATAGATGAGGCCCCGCCTG+CGG 0.605485 7.2:-68945207 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:+68945546 MS.gene001546:CDS
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:+68945230 MS.gene001546:CDS
GTCTCCGTCATTCTACAACA+TGG 0.633621 7.2:+68945179 MS.gene001546:CDS
TCTGATGCAGTCAGTAGCAG+TGG 0.636122 7.2:+68946117 MS.gene001546:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.639283 7.2:+68945514 MS.gene001546:CDS
ACTGACTGCATCAGATGCGG+TGG 0.641619 7.2:-68946109 None:intergenic
GTTGTAGAATGACGGAGACG+AGG 0.657627 7.2:-68945175 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:+68945563 MS.gene001546:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:-68945144 None:intergenic
GCTACTGACTGCATCAGATG+CGG 0.675085 7.2:-68946112 None:intergenic
TATGCTGAAGGAGCTAGGTG+TGG 0.709172 7.2:+68945963 MS.gene001546:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:-68945219 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:-68945556 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG + chr7.2:68945453-68945472 MS.gene001546:intron 10.0%
!! CAAATGAAATATTGAACTTT+GGG - chr7.2:68945927-68945946 None:intergenic 20.0%
!! CTATAATCATAAACAAGAAA+GGG - chr7.2:68946182-68946201 None:intergenic 20.0%
!! TACAAAAAGTTAACAAAATC+AGG - chr7.2:68945393-68945412 None:intergenic 20.0%
!! TCTATAATCATAAACAAGAA+AGG - chr7.2:68946183-68946202 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG + chr7.2:68945462-68945481 MS.gene001546:intron 20.0%
! ATGATTATAGAAGAATTGAC+TGG + chr7.2:68946192-68946211 MS.gene001546:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG - chr7.2:68945659-68945678 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG + chr7.2:68945925-68945944 MS.gene001546:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG - chr7.2:68945928-68945947 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG + chr7.2:68946069-68946088 MS.gene001546:CDS 25.0%
!! TATGATTTTCACCTTTTGAA+TGG + chr7.2:68945658-68945677 MS.gene001546:CDS 25.0%
!!! GAATGATAATTTTGATGCTT+CGG + chr7.2:68945624-68945643 MS.gene001546:CDS 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG - chr7.2:68946041-68946060 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG + chr7.2:68945736-68945755 MS.gene001546:CDS 25.0%
AGTATTGTTGTAGTGAAAAG+TGG - chr7.2:68945363-68945382 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG + chr7.2:68945541-68945560 MS.gene001546:CDS 30.0%
GACCAATGAAGTGAATTTAT+GGG + chr7.2:68945495-68945514 MS.gene001546:CDS 30.0%
GTATTGTTGTAGTGAAAAGT+GGG - chr7.2:68945362-68945381 None:intergenic 30.0%
TAACTGAGTTTCCATTCAAA+AGG - chr7.2:68945672-68945691 None:intergenic 30.0%
TATTGTTGTAGTGAAAAGTG+GGG - chr7.2:68945361-68945380 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG + chr7.2:68945494-68945513 MS.gene001546:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG + chr7.2:68945542-68945561 MS.gene001546:CDS 30.0%
TTATCTTCACCTTGCTTATA+AGG - chr7.2:68945766-68945785 None:intergenic 30.0%
TTCTTCCAAATGCAAAAGAT+GGG + chr7.2:68945809-68945828 MS.gene001546:CDS 30.0%
TTTCTTCCAAATGCAAAAGA+TGG + chr7.2:68945808-68945827 MS.gene001546:CDS 30.0%
TTTGAATGGAAACTCAGTTA+AGG + chr7.2:68945672-68945691 MS.gene001546:CDS 30.0%
AACAATCATCTTTGTTGGAC+AGG + chr7.2:68946215-68946234 MS.gene001546:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG + chr7.2:68946210-68946229 MS.gene001546:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG - chr7.2:68945500-68945519 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG + chr7.2:68945999-68946018 MS.gene001546:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG - chr7.2:68945262-68945281 None:intergenic 35.0%
TCTCTTCAACCTTCTTTCAA+AGG + chr7.2:68945264-68945283 MS.gene001546:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG + chr7.2:68945951-68945970 MS.gene001546:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG - chr7.2:68945263-68945282 None:intergenic 35.0%
! AAGTTGAGAAGTTGTTGTTG+TGG - chr7.2:68945110-68945129 None:intergenic 35.0%
! AGTTGAGAAGTTGTTGTTGT+GGG - chr7.2:68945109-68945128 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG - chr7.2:68945276-68945295 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG - chr7.2:68946001-68946020 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG + chr7.2:68945320-68945339 MS.gene001546:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG + chr7.2:68945899-68945918 MS.gene001546:CDS 40.0%
AGCACAACTTGTAGTGAAAG+TGG - chr7.2:68945058-68945077 None:intergenic 40.0%
AGCACCATGTTGTAGAATGA+CGG - chr7.2:68945186-68945205 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG + chr7.2:68945227-68945246 MS.gene001546:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG + chr7.2:68945882-68945901 MS.gene001546:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG - chr7.2:68945892-68945911 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG + chr7.2:68945889-68945908 MS.gene001546:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG - chr7.2:68945762-68945781 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG + chr7.2:68945595-68945614 MS.gene001546:CDS 40.0%
GTGTTGCAGTAACTCAGATT+CGG - chr7.2:68945863-68945882 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG + chr7.2:68945226-68945245 MS.gene001546:CDS 40.0%
! GTTGAGAAGTTGTTGTTGTG+GGG - chr7.2:68945108-68945127 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG + chr7.2:68945985-68946004 MS.gene001546:CDS 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG + chr7.2:68945982-68946001 MS.gene001546:CDS 40.0%
CCATCGACGAAAGATAGATG+AGG - chr7.2:68945222-68945241 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG + chr7.2:68945219-68945238 MS.gene001546:CDS 45.0%
GCTACAAAGTCTAGTCGAGT+TGG - chr7.2:68946153-68946172 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG - chr7.2:68945994-68946013 None:intergenic 45.0%
GTCTCCGTCATTCTACAACA+TGG + chr7.2:68945179-68945198 MS.gene001546:CDS 45.0%
TCTGATATGCTGAAGGAGCT+AGG + chr7.2:68945958-68945977 MS.gene001546:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG + chr7.2:68945514-68945533 MS.gene001546:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG + chr7.2:68945602-68945621 MS.gene001546:CDS 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG + chr7.2:68945754-68945773 MS.gene001546:CDS 45.0%
! GTTGATCGGTGGATTTGGAT+TGG - chr7.2:68945136-68945155 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG + chr7.2:68945546-68945565 MS.gene001546:CDS 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG - chr7.2:68945141-68945160 None:intergenic 45.0%
AGGTGCTCAATCCACTTGCT+GGG + chr7.2:68946235-68946254 MS.gene001546:CDS 50.0%
GCCAACTTTGCTTGAGAAGC+TGG + chr7.2:68945834-68945853 MS.gene001546:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG - chr7.2:68945838-68945857 None:intergenic 50.0%
GGTCGGTCGACAACTTAACT+CGG + chr7.2:68945563-68945582 MS.gene001546:CDS 50.0%
TATGCTGAAGGAGCTAGGTG+TGG + chr7.2:68945963-68945982 MS.gene001546:CDS 50.0%
TCTGATGCAGTCAGTAGCAG+TGG + chr7.2:68946117-68946136 MS.gene001546:CDS 50.0%
TTTCGTCGATGGTGTATGGG+TGG + chr7.2:68945230-68945249 MS.gene001546:CDS 50.0%
! AATGACGGAGACGAGGATAG+AGG - chr7.2:68945171-68945190 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG - chr7.2:68945133-68945152 None:intergenic 50.0%
! GCTACTGACTGCATCAGATG+CGG - chr7.2:68946115-68946134 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG - chr7.2:68945817-68945836 None:intergenic 50.0%
! GTTGTAGAATGACGGAGACG+AGG - chr7.2:68945178-68945197 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG - chr7.2:68945147-68945166 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG - chr7.2:68945150-68945169 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG - chr7.2:68945559-68945578 None:intergenic 55.0%
ACTGACTGCATCAGATGCGG+TGG - chr7.2:68946112-68946131 None:intergenic 55.0%
CAGGTGCTCAATCCACTTGC+TGG + chr7.2:68946234-68946253 MS.gene001546:CDS 55.0%
GCAGTCAGTAGCAGTGGCAT+GGG + chr7.2:68946123-68946142 MS.gene001546:CDS 55.0%
GTGCTAAGCATCATCGCTGC+TGG + chr7.2:68945073-68945092 MS.gene001546:CDS 55.0%
TGCAGTCAGTAGCAGTGGCA+TGG + chr7.2:68946122-68946141 MS.gene001546:CDS 55.0%
! AGTTGTTGTTGTGGGGCCCT+CGG - chr7.2:68945101-68945120 None:intergenic 55.0%
CTACAACATGGTGCTCCCGC+AGG + chr7.2:68945191-68945210 MS.gene001546:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG - chr7.2:68945165-68945184 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG - chr7.2:68946097-68946116 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG + chr7.2:68945082-68945101 MS.gene001546:CDS 60.0%
AACATGGTGCTCCCGCAGGC+GGG + chr7.2:68945195-68945214 MS.gene001546:CDS 65.0%
ATAGATGAGGCCCCGCCTGC+GGG - chr7.2:68945209-68945228 None:intergenic 65.0%
CAACATGGTGCTCCCGCAGG+CGG + chr7.2:68945194-68945213 MS.gene001546:CDS 65.0%
GATAGATGAGGCCCCGCCTG+CGG - chr7.2:68945210-68945229 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG + chr7.2:68945081-68945100 MS.gene001546:CDS 65.0%
ACATGGTGCTCCCGCAGGCG+GGG + chr7.2:68945196-68945215 MS.gene001546:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 68945042 68946260 68945042 ID=MS.gene001546
chr7.2 mRNA 68945042 68946260 68945042 ID=MS.gene001546.t1;Parent=MS.gene001546
chr7.2 exon 68945042 68945341 68945042 ID=MS.gene001546.t1.exon1;Parent=MS.gene001546.t1
chr7.2 CDS 68945042 68945341 68945042 ID=cds.MS.gene001546.t1;Parent=MS.gene001546.t1
chr7.2 exon 68945484 68946260 68945484 ID=MS.gene001546.t1.exon2;Parent=MS.gene001546.t1
chr7.2 CDS 68945484 68946260 68945484 ID=cds.MS.gene001546.t1;Parent=MS.gene001546.t1
Gene Sequence

>MS.gene001546

ATGGTGTCTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAACATGGTGCTCCCGCAGGCGGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCACTTTTCACTACAACAATACTTGCATGTCCTGATTTTGTTAACTTTTTGTATGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCATATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAATCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACTATGTACTTTTTTCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGCAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGTGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCAGTAGCAGTGGCATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTATAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCACTTGCTGGGTGA
Protein sequence

>MS.gene001546.t1

MVSISTFTTSCAKHHRCWLRGPHNNNFSTSSNPNPPINSTPSPLSSSPSFYNMVLPQAGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGHIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKNQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLQHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASDAVSSSGMGFPTRLDFVADHPFLFMIIEELTGTIIFVGQVLNPLAG