AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001629

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001629.t1 MTR_5g099010 85.653 467 32 5 1 467 2 433 0.0 772
MS.gene001629.t1 MTR_3g115220 57.895 437 145 5 40 467 20 426 4.29e-178 511
MS.gene001629.t1 MTR_4g100810 55.053 376 136 5 94 467 79 423 1.43e-137 406
MS.gene001629.t1 MTR_5g012770 49.083 436 167 9 39 467 41 428 1.18e-128 382
MS.gene001629.t1 MTR_1g031590 34.968 469 246 12 20 466 46 477 8.44e-79 255
MS.gene001629.t1 MTR_3g099480 36.325 468 239 14 18 466 27 454 2.05e-77 251
MS.gene001629.t1 MTR_4g084570 34.468 470 249 12 19 466 46 478 3.17e-76 249
MS.gene001629.t1 MTR_5g064620 41.207 381 177 11 95 466 86 428 4.52e-76 247
MS.gene001629.t1 MTR_3g096020 36.207 464 248 10 6 466 85 503 1.17e-73 243
MS.gene001629.t1 MTR_5g059260 39.385 358 168 8 126 466 160 485 5.11e-71 236
MS.gene001629.t1 MTR_5g042200 42.120 349 160 9 126 466 88 402 1.10e-70 233
MS.gene001629.t1 MTR_4g082310 40.000 370 178 9 109 466 77 414 1.31e-70 233
MS.gene001629.t1 MTR_3g005340 36.247 389 194 8 96 466 123 475 5.62e-70 233
MS.gene001629.t1 MTR_4g019210 37.468 395 210 11 74 466 187 546 7.13e-70 234
MS.gene001629.t1 MTR_3g086570 37.989 358 175 9 126 466 153 480 4.00e-69 230
MS.gene001629.t1 MTR_4g125460 36.074 377 202 9 94 466 62 403 7.32e-68 225
MS.gene001629.t1 MTR_2g016470 35.354 396 222 11 95 466 160 545 1.12e-67 228
MS.gene001629.t1 MTR_5g081690 33.628 452 250 13 20 466 29 435 2.94e-67 224
MS.gene001629.t1 MTR_6g016015 39.193 347 174 7 126 466 118 433 6.96e-67 223
MS.gene001629.t1 MTR_4g125460 36.074 377 202 9 94 466 201 542 1.97e-66 224
MS.gene001629.t1 MTR_4g110030 38.905 347 175 8 126 466 119 434 9.09e-65 218
MS.gene001629.t1 MTR_2g059350 34.961 389 206 10 94 466 76 433 2.18e-63 214
MS.gene001629.t1 MTR_5g032100 35.038 391 222 11 94 466 60 436 1.78e-61 208
MS.gene001629.t1 MTR_3g100310 31.626 449 255 13 48 466 24 450 3.82e-61 208
MS.gene001629.t1 MTR_3g026650 35.492 386 205 9 88 464 136 486 2.84e-58 199
MS.gene001629.t1 MTR_3g026650 34.974 386 211 8 88 466 136 488 2.84e-58 201
MS.gene001629.t1 MTR_4g132590 35.792 366 200 10 126 466 68 423 2.47e-57 197
MS.gene001629.t1 MTR_1g102030 33.159 383 219 9 93 466 60 414 7.25e-57 196
MS.gene001629.t1 MTR_4g132590 35.792 366 200 10 126 466 167 522 1.93e-56 197
MS.gene001629.t1 MTR_3g086570 36.039 308 150 9 126 416 153 430 5.99e-53 184
MS.gene001629.t1 MTR_4g023030 33.333 387 216 7 88 466 196 548 1.47e-51 184
MS.gene001629.t1 MTR_7g017330 30.704 355 209 10 85 428 62 390 2.86e-37 145
MS.gene001629.t1 MTR_3g026650 37.500 208 125 4 88 293 136 340 2.77e-34 133
MS.gene001629.t1 MTR_4g010990 27.114 343 210 11 126 466 78 382 6.37e-30 121
MS.gene001629.t1 MTR_1g101990 34.322 236 121 8 234 466 6 210 1.22e-28 115
MS.gene001629.t1 MTR_3g092590 26.699 412 257 12 36 433 7 387 1.33e-28 119
MS.gene001629.t1 MTR_3g092590 26.585 410 260 12 36 433 7 387 3.35e-28 118
MS.gene001629.t1 MTR_4g010990 26.364 330 203 11 139 466 2 293 4.77e-26 108
MS.gene001629.t1 MTR_1g007390 28.767 292 175 8 151 432 124 392 2.64e-24 106
MS.gene001629.t1 MTR_7g064210 36.464 181 72 5 252 420 39 188 4.44e-22 98.6
MS.gene001629.t1 MTR_1g101985 40.952 105 59 2 94 198 61 162 7.54e-19 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001629.t1 AT4G38390 57.773 431 146 6 40 467 42 439 1.20e-174 501
MS.gene001629.t1 AT1G76270 57.763 438 150 5 33 467 15 420 1.09e-171 494
MS.gene001629.t1 AT1G20550 54.867 452 161 7 29 467 2 423 5.98e-166 480
MS.gene001629.t1 AT4G16650 54.255 376 139 4 94 467 93 437 3.55e-131 390
MS.gene001629.t1 AT4G16650 54.255 376 139 4 94 467 93 437 3.55e-131 390
MS.gene001629.t1 AT2G01480 39.045 356 172 8 126 466 157 482 3.32e-77 251
MS.gene001629.t1 AT2G01480 39.045 356 172 8 126 466 157 482 1.18e-76 250
MS.gene001629.t1 AT1G38065 38.889 378 181 8 109 466 17 364 9.49e-75 243
MS.gene001629.t1 AT1G22460 43.478 345 158 8 126 466 163 474 2.21e-74 244
MS.gene001629.t1 AT1G38065 40.169 356 168 7 126 466 29 354 5.40e-74 240
MS.gene001629.t1 AT1G38131 40.169 356 168 7 126 466 158 483 1.78e-72 239
MS.gene001629.t1 AT5G64600 34.792 457 236 12 28 466 19 431 1.26e-71 236
MS.gene001629.t1 AT1G14970 38.483 356 174 8 126 466 12 337 5.05e-71 231
MS.gene001629.t1 AT1G14970 38.483 356 174 8 126 466 38 363 1.66e-70 231
MS.gene001629.t1 AT1G35510 37.173 382 203 8 94 466 134 487 2.90e-70 233
MS.gene001629.t1 AT1G14970 38.483 356 174 8 126 466 158 483 1.91e-69 231
MS.gene001629.t1 AT5G35570 39.523 377 187 11 95 466 225 565 1.08e-68 231
MS.gene001629.t1 AT3G26370 37.709 358 176 10 126 466 161 488 1.99e-67 226
MS.gene001629.t1 AT3G54100 32.684 462 250 12 19 466 122 536 3.50e-67 227
MS.gene001629.t1 AT2G37980 36.815 383 191 10 94 466 199 540 1.88e-66 225
MS.gene001629.t1 AT5G65470 36.829 391 217 11 94 466 59 437 3.94e-66 221
MS.gene001629.t1 AT1G14020 39.595 346 171 8 127 466 95 408 5.94e-65 218
MS.gene001629.t1 AT4G24530 34.456 386 227 10 94 464 75 449 7.73e-65 218
MS.gene001629.t1 AT5G15740 38.286 350 173 8 126 466 109 424 7.93e-65 218
MS.gene001629.t1 AT3G02250 38.040 347 178 7 126 466 109 424 1.12e-63 214
MS.gene001629.t1 AT1G29200 37.113 388 219 8 97 466 44 424 1.23e-63 214
MS.gene001629.t1 AT1G29200 37.113 388 219 8 97 466 44 424 1.23e-63 214
MS.gene001629.t1 AT2G03280 38.728 346 174 8 127 466 92 405 4.93e-63 212
MS.gene001629.t1 AT1G29200 37.113 388 219 8 97 466 160 540 1.84e-62 214
MS.gene001629.t1 AT1G29200 38.655 357 194 8 128 466 1 350 1.15e-61 207
MS.gene001629.t1 AT1G62330 35.695 367 200 10 126 466 224 580 7.96e-61 210
MS.gene001629.t1 AT2G03280 36.290 372 174 8 127 466 92 432 5.95e-60 204
MS.gene001629.t1 AT5G63390 33.420 383 226 6 86 466 125 480 1.64e-57 199
MS.gene001629.t1 AT1G11990 38.369 331 159 7 126 441 193 493 2.15e-57 199
MS.gene001629.t1 AT1G04910 33.596 381 212 10 93 466 60 406 3.04e-57 197
MS.gene001629.t1 AT1G11990 37.536 349 174 9 126 441 178 515 3.56e-56 197
MS.gene001629.t1 AT5G01100 29.956 454 250 13 38 466 120 530 2.70e-55 195
MS.gene001629.t1 AT2G44500 33.246 382 214 6 94 467 146 494 1.56e-54 191
MS.gene001629.t1 AT3G07900 35.638 376 213 9 93 466 156 504 3.65e-51 182
MS.gene001629.t1 AT3G30300 29.673 428 229 16 22 429 18 393 1.36e-36 143
MS.gene001629.t1 AT3G30300 29.673 428 229 16 22 429 18 393 1.36e-36 143
MS.gene001629.t1 AT1G52630 27.778 396 235 14 76 466 30 379 4.21e-35 136
MS.gene001629.t1 AT3G03810 32.092 349 186 10 97 433 77 386 9.16e-34 134
MS.gene001629.t1 AT3G03810 32.092 349 186 10 97 433 77 386 9.16e-34 134
MS.gene001629.t1 AT3G26370 38.021 192 108 6 126 307 161 351 4.94e-31 124
MS.gene001629.t1 AT2G44500 36.139 202 125 3 94 293 146 345 1.28e-30 123
MS.gene001629.t1 AT1G52630 28.788 330 193 11 139 466 2 291 2.73e-30 120

Find 120 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTCTCTGGTTGCTATTA+TGG 0.114027 5.4:+78310813 MS.gene001629:CDS
GTTTCATCGCGCTACATTTA+AGG 0.117490 5.4:+78310559 MS.gene001629:CDS
TGAAGAGCATTTACAATAAA+AGG 0.154073 5.4:-78308359 None:intergenic
AATTGGATCATACATCTTTC+TGG 0.170645 5.4:+78309865 MS.gene001629:CDS
ACAAATTTCTCTCCCATATT+TGG 0.187446 5.4:-78310110 None:intergenic
CATTCTCTGGTTGCTATTAT+GGG 0.189893 5.4:+78310814 MS.gene001629:CDS
CAAATTTACGGATTCGATTC+AGG 0.201483 5.4:+78310491 MS.gene001629:CDS
TGTAAAGCAGCTACCAAATA+TGG 0.220138 5.4:+78310097 MS.gene001629:CDS
CTTGGAACACGCACTGTATA+TGG 0.243424 5.4:-78310137 None:intergenic
CTACCATGCTCTCAAATTTA+CGG 0.290291 5.4:+78310479 MS.gene001629:CDS
CCATGTCTTCTTACTTTCTC+AGG 0.302140 5.4:-78310989 None:intergenic
TTCTTTCTCTTCACTGATGA+TGG 0.313084 5.4:-78308185 None:intergenic
ACGCGACCCTCGTAGCATTT+GGG 0.325695 5.4:-78310170 None:intergenic
GAAAAGAACTTGGTGAAATT+AGG 0.326334 5.4:+78310851 MS.gene001629:CDS
TACTCTTGTTATTCCAGAAT+TGG 0.327689 5.4:+78309848 MS.gene001629:CDS
AAGGAGTCCGATGAGTCTTC+TGG 0.328208 5.4:-78308231 None:intergenic
ACGCATTTGTATGTGGCTTC+TGG 0.336705 5.4:+78311076 MS.gene001629:CDS
TGTATTTCAGGAAAATGATT+TGG 0.337250 5.4:+78308466 MS.gene001629:intron
AACGCGACCCTCGTAGCATT+TGG 0.337594 5.4:-78310171 None:intergenic
CTACTTACAGGCATGATCTA+TGG 0.340612 5.4:+78308639 MS.gene001629:CDS
AAAGATGTATGATCCAATTC+TGG 0.354641 5.4:-78309861 None:intergenic
GTATCGATCCGGATGAGTTT+TGG 0.355722 5.4:-78308837 None:intergenic
GAGACGACGGCGAAGGAAAC+TGG 0.366522 5.4:-78308258 None:intergenic
CTTAGCTACCAAGGAGGAAT+TGG 0.368531 5.4:+78311171 MS.gene001629:CDS
AAGAGTAGCATTCAAAAGAT+AGG 0.384573 5.4:-78309832 None:intergenic
AGCATAAGACCAACTTCCTC+TGG 0.394026 5.4:-78311028 None:intergenic
CCGGATATGCTTGCATTCTC+TGG 0.396269 5.4:+78310801 MS.gene001629:CDS
CCAGAGAATGCAAGCATATC+CGG 0.399860 5.4:-78310801 None:intergenic
GGCTTAAATCAACAGAGAAC+AGG 0.407017 5.4:+78308881 MS.gene001629:CDS
CTCAATTATTTGATGCCGAT+TGG 0.407362 5.4:+78310042 MS.gene001629:CDS
GCAATCGCCATTTCACATTC+CGG 0.408047 5.4:+78308517 MS.gene001629:CDS
GTCTCCTTTGAATGGAAGTT+GGG 0.408062 5.4:-78311148 None:intergenic
GTGGCTTCTGGAGAAATATA+TGG 0.412231 5.4:+78311088 MS.gene001629:CDS
AGGCAAATGAAGCTACTTAC+AGG 0.416698 5.4:+78308627 MS.gene001629:intron
TCAGGGAATGGGAAATTTGT+TGG 0.419141 5.4:+78310509 MS.gene001629:CDS
ATCTACAAAAGCTGAGGTGC+AGG 0.420709 5.4:+78310451 MS.gene001629:CDS
GAAGAGCATTTACAATAAAA+GGG 0.426667 5.4:-78308358 None:intergenic
CTACAGACTTTCTAATCTGC+TGG 0.431795 5.4:+78310422 MS.gene001629:CDS
AAATTTACGGATTCGATTCA+GGG 0.431803 5.4:+78310492 MS.gene001629:CDS
GGTCTCCTTTGAATGGAAGT+TGG 0.432592 5.4:-78311149 None:intergenic
CTGTTGATTTAAGCCTCCAC+TGG 0.440491 5.4:-78308873 None:intergenic
TACGGATTCGATTCAGGGAA+TGG 0.440840 5.4:+78310497 MS.gene001629:CDS
CTTTCCCAACTTCCATTCAA+AGG 0.456148 5.4:+78311144 MS.gene001629:CDS
ATTGCATTACACAGGTTGTT+CGG 0.456755 5.4:+78310385 MS.gene001629:intron
AGAGAGCTCTGAGGGGTGCT+AGG 0.456987 5.4:-78311123 None:intergenic
CGTGAAGAGAAAGACACAAA+TGG 0.458606 5.4:-78311196 None:intergenic
TTCTCTGCCTGTAGTAATGC+CGG 0.460147 5.4:+78308683 MS.gene001629:CDS
TGTTTCATATAGGTTTGAAC+CGG 0.461614 5.4:+78310782 MS.gene001629:CDS
TAGCTAAGGTCTCCTTTGAA+TGG 0.465721 5.4:-78311156 None:intergenic
ACGGATTCGATTCAGGGAAT+GGG 0.465732 5.4:+78310498 MS.gene001629:CDS
CATCTTTCTGGAAAGACAAC+AGG 0.468808 5.4:+78309877 MS.gene001629:CDS
GTGAAGAGAAAGACACAAAT+GGG 0.470665 5.4:-78311195 None:intergenic
AAAGAAAATGAAATTGAAGT+TGG 0.492104 5.4:-78310712 None:intergenic
CAATTCCTCCTTGGTAGCTA+AGG 0.492942 5.4:-78311170 None:intergenic
CCAACTTCCTCTGGGGTAAG+TGG 0.493118 5.4:-78311019 None:intergenic
GTTGGGAAAGAGAGCTCTGA+GGG 0.493118 5.4:-78311131 None:intergenic
GGTCTTATGCTTAGAGCACT+AGG 0.494580 5.4:+78311040 MS.gene001629:CDS
CTAAAATTCTAGCTGGAAGA+AGG 0.494617 5.4:+78311290 MS.gene001629:CDS
CTCTGGTTGCTATTATGGGG+GGG 0.495519 5.4:+78310818 MS.gene001629:CDS
GGCTAATACCAAAACTCATC+CGG 0.498226 5.4:+78308829 MS.gene001629:CDS
ACACGCTTCTTGACCAGCAC+TGG 0.503067 5.4:-78310197 None:intergenic
TTCTCTGGTTGCTATTATGG+GGG 0.504344 5.4:+78310816 MS.gene001629:CDS
TGTGTCTTTCTCTTCACGCA+TGG 0.504664 5.4:+78311201 MS.gene001629:CDS
AAAGAGAAGGCAAACGGAGA+TGG 0.510159 5.4:-78308303 None:intergenic
CGCGACCCTCGTAGCATTTG+GGG 0.512807 5.4:-78310169 None:intergenic
GTAAAGCAGCTACCAAATAT+GGG 0.514532 5.4:+78310098 MS.gene001629:CDS
TTGATTACCGGAATGTGAAA+TGG 0.514677 5.4:-78308524 None:intergenic
ATTCTCTGGTTGCTATTATG+GGG 0.523384 5.4:+78310815 MS.gene001629:CDS
CATATACAGTGCGTGTTCCA+AGG 0.527953 5.4:+78310138 MS.gene001629:CDS
CCTGAGAAAGTAAGAAGACA+TGG 0.528230 5.4:+78310989 MS.gene001629:CDS
AAGGGATGTTATAAACCAAT+CGG 0.532490 5.4:-78310057 None:intergenic
ATTGGTTTATAACATCCCTT+CGG 0.534376 5.4:+78310060 MS.gene001629:CDS
ACAATTATCACATTGAACTT+CGG 0.535711 5.4:-78310736 None:intergenic
GCATAAGACCAACTTCCTCT+GGG 0.536685 5.4:-78311027 None:intergenic
GAAAAGAAAGAGAAGGCAAA+CGG 0.539093 5.4:-78308309 None:intergenic
AGAAAAGAAAGAAAAGAACT+TGG 0.540522 5.4:+78310841 MS.gene001629:CDS
CAACTCTTATGTCATTCCGA+AGG 0.542501 5.4:-78310076 None:intergenic
AACATGGCTAAAATTCTAGC+TGG 0.543477 5.4:+78311283 MS.gene001629:CDS
GTTGACACCGGCATTACTAC+AGG 0.543830 5.4:-78308690 None:intergenic
GCAGATAATTGATGCTGTTG+TGG 0.547639 5.4:+78309806 MS.gene001629:intron
AATTGAAACGCATTTGTATG+TGG 0.548016 5.4:+78311069 MS.gene001629:CDS
AAACGGAGATGGCGGAAATG+AGG 0.548034 5.4:-78308292 None:intergenic
TGGCGGAAATGAGGAGGCGA+TGG 0.552680 5.4:-78308283 None:intergenic
GCGATTAACAAGTATCGATC+CGG 0.554337 5.4:-78308848 None:intergenic
AACAAACAACAATGGGAACA+TGG 0.556243 5.4:+78311267 MS.gene001629:CDS
AACTCTTATGTCATTCCGAA+GGG 0.557571 5.4:-78310075 None:intergenic
GAGAGCTCTGAGGGGTGCTA+GGG 0.558049 5.4:-78311122 None:intergenic
AAATGGGGCCAATTCCTCCT+TGG 0.558531 5.4:-78311179 None:intergenic
AATCCGTAAATTTGAGAGCA+TGG 0.564183 5.4:-78310482 None:intergenic
TGGGAAATTTGTTGGTTGAG+CGG 0.564822 5.4:+78310517 MS.gene001629:CDS
TCTCTGGTTGCTATTATGGG+GGG 0.565807 5.4:+78310817 MS.gene001629:CDS
TTGTTAATCGCAACCAGTGG+AGG 0.567512 5.4:+78308860 MS.gene001629:CDS
GGCGAAGGAAACTGGCAAGA+AGG 0.588540 5.4:-78308250 None:intergenic
GATGGATGAGACGACGGCGA+AGG 0.593369 5.4:-78308265 None:intergenic
GAGAAGGCAAACGGAGATGG+CGG 0.595462 5.4:-78308300 None:intergenic
CCACTTACCCCAGAGGAAGT+TGG 0.600004 5.4:+78311019 MS.gene001629:CDS
GCATGATGAAAAGAAAGAGA+AGG 0.602057 5.4:-78308316 None:intergenic
GCTTAAATCAACAGAGAACA+GGG 0.602960 5.4:+78308882 MS.gene001629:CDS
AAGAGCATTTACAATAAAAG+GGG 0.610292 5.4:-78308357 None:intergenic
CGGAGATGGCGGAAATGAGG+AGG 0.616366 5.4:-78308289 None:intergenic
GCATTTACAATAAAAGGGGA+AGG 0.618091 5.4:-78308353 None:intergenic
AAAGGAGACCTTAGCTACCA+AGG 0.620774 5.4:+78311162 MS.gene001629:CDS
GACAAGTCCAGAAGACTCAT+CGG 0.622144 5.4:+78308224 MS.gene001629:CDS
AACTTGGTGAAATTAGGAAG+CGG 0.626657 5.4:+78310857 MS.gene001629:CDS
TACTTGTTAATCGCAACCAG+TGG 0.633957 5.4:+78308857 MS.gene001629:CDS
TTTACTTGCAAAGTTGACAC+CGG 0.634644 5.4:-78308702 None:intergenic
TGGAGAAATATATGGATGCG+AGG 0.638775 5.4:+78311096 MS.gene001629:CDS
TTGGTGAAATTAGGAAGCGG+TGG 0.644603 5.4:+78310860 MS.gene001629:CDS
AGAAAGTAAGAAGACATGGA+AGG 0.646390 5.4:+78310993 MS.gene001629:CDS
TCTACAAAAGCTGAGGTGCA+GGG 0.657185 5.4:+78310452 MS.gene001629:CDS
GGAGGCGATGGATGAGACGA+CGG 0.693598 5.4:-78308271 None:intergenic
GCGACCCTCGTAGCATTTGG+GGG 0.700748 5.4:-78310168 None:intergenic
AGTTGGGAAAGAGAGCTCTG+AGG 0.701986 5.4:-78311132 None:intergenic
TGAAGAGAAAGACACAAATG+GGG 0.704290 5.4:-78311194 None:intergenic
ATGATGATCTACAAAAGCTG+AGG 0.712332 5.4:+78310445 MS.gene001629:CDS
CATAAGACCAACTTCCTCTG+GGG 0.724014 5.4:-78311026 None:intergenic
CTTAAATCAACAGAGAACAG+GGG 0.728232 5.4:+78308883 MS.gene001629:CDS
AAGGTGTCCACTTACCCCAG+AGG 0.746305 5.4:+78311012 MS.gene001629:CDS
TTGGGAAAGAGAGCTCTGAG+GGG 0.774845 5.4:-78311130 None:intergenic
GGAGACCTTAGCTACCAAGG+AGG 0.785211 5.4:+78311165 MS.gene001629:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAGTTATAATAATCAAA+TGG - chr5.4:78310592-78310611 None:intergenic 10.0%
!! TATATTATAAATGAAATAGA+AGG - chr5.4:78308402-78308421 None:intergenic 10.0%
!!! AAAATGTAAATTATTGTTTT+AGG - chr5.4:78310668-78310687 None:intergenic 10.0%
!! AAAAATTATAGATTGTTTGT+GGG + chr5.4:78309628-78309647 MS.gene001629:intron 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr5.4:78309215-78309234 MS.gene001629:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr5.4:78309216-78309235 None:intergenic 15.0%
!! AATCAAAAGCAATTAAATAT+AGG - chr5.4:78308775-78308794 None:intergenic 15.0%
!! CAAATATTACATACAAATTA+AGG - chr5.4:78309997-78310016 None:intergenic 15.0%
!! TTAAATGTTATACAATCATA+TGG - chr5.4:78310366-78310385 None:intergenic 15.0%
!!! ATCACATATAATATTTTCTT+TGG + chr5.4:78309945-78309964 MS.gene001629:intron 15.0%
!!! ATGAAAATAATTTTGATGAA+AGG - chr5.4:78310252-78310271 None:intergenic 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr5.4:78309342-78309361 MS.gene001629:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr5.4:78309239-78309258 MS.gene001629:intron 15.0%
!! AAAAAATACAGATTGTTTGT+GGG + chr5.4:78309782-78309801 MS.gene001629:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr5.4:78309225-78309244 None:intergenic 20.0%
!! AAAGAAAATGAAATTGAAGT+TGG - chr5.4:78310715-78310734 None:intergenic 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr5.4:78309182-78309201 MS.gene001629:intron 20.0%
!! ACAAAATGCATAAAAAAAGA+AGG - chr5.4:78308562-78308581 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr5.4:78309302-78309321 MS.gene001629:intron 20.0%
!! GAAAAATTATAGATTGTTTG+TGG + chr5.4:78309627-78309646 MS.gene001629:intron 20.0%
!!! TTGTTTTTTCTGTTTCATAT+AGG + chr5.4:78310772-78310791 MS.gene001629:CDS 20.0%
!!! TTTTTGTAACAAACAACAAT+GGG + chr5.4:78311260-78311279 MS.gene001629:CDS 20.0%
! AACATTTAATTGCATTACAC+AGG + chr5.4:78310377-78310396 MS.gene001629:intron 25.0%
! AAGGAGGATAACTTATTAAT+CGG + chr5.4:78309002-78309021 MS.gene001629:intron 25.0%
! AATCTCTACCCAATAATTAT+AGG + chr5.4:78309447-78309466 MS.gene001629:intron 25.0%
! ACAATTATCACATTGAACTT+CGG - chr5.4:78310739-78310758 None:intergenic 25.0%
! ACAATTCATGAGATGAAAAA+AGG - chr5.4:78308748-78308767 None:intergenic 25.0%
! AGAAAAGAAAGAAAAGAACT+TGG + chr5.4:78310841-78310860 MS.gene001629:CDS 25.0%
! GAAAAAATACAGATTGTTTG+TGG + chr5.4:78309781-78309800 MS.gene001629:intron 25.0%
! GAATGATATATTACGTTATG+TGG + chr5.4:78309582-78309601 MS.gene001629:intron 25.0%
! TATAACTAAATATTTGTCCC+TGG + chr5.4:78310601-78310620 MS.gene001629:intron 25.0%
! TGTAACTTTGATTGTATTTC+AGG + chr5.4:78308454-78308473 MS.gene001629:intron 25.0%
! TGTATTTCAGGAAAATGATT+TGG + chr5.4:78308466-78308485 MS.gene001629:intron 25.0%
!! GTTTTTGTAACAAACAACAA+TGG + chr5.4:78311259-78311278 MS.gene001629:CDS 25.0%
!! TGGTCATTTACAAAAAGTAT+AGG + chr5.4:78309420-78309439 MS.gene001629:intron 25.0%
!!! AAGAGCATTTACAATAAAAG+GGG - chr5.4:78308360-78308379 None:intergenic 25.0%
!!! ATACTTTTTGTAAATGACCA+CGG - chr5.4:78309420-78309439 None:intergenic 25.0%
!!! GAAGAGCATTTACAATAAAA+GGG - chr5.4:78308361-78308380 None:intergenic 25.0%
!!! TCCTAATTGTGTTTTTTTAG+CGG - chr5.4:78309520-78309539 None:intergenic 25.0%
!!! TGAAGAGCATTTACAATAAA+AGG - chr5.4:78308362-78308381 None:intergenic 25.0%
!!! TTTTGTTTCTTGGAATTTGA+AGG + chr5.4:78308607-78308626 MS.gene001629:intron 25.0%
AAAGATGTATGATCCAATTC+TGG - chr5.4:78309864-78309883 None:intergenic 30.0%
AAATTTACGGATTCGATTCA+GGG + chr5.4:78310492-78310511 MS.gene001629:CDS 30.0%
AAGAGTAGCATTCAAAAGAT+AGG - chr5.4:78309835-78309854 None:intergenic 30.0%
AAGGGATGTTATAAACCAAT+CGG - chr5.4:78310060-78310079 None:intergenic 30.0%
AATTGAAACGCATTTGTATG+TGG + chr5.4:78311069-78311088 MS.gene001629:CDS 30.0%
AATTGGATCATACATCTTTC+TGG + chr5.4:78309865-78309884 MS.gene001629:CDS 30.0%
ACAAATTTCTCTCCCATATT+TGG - chr5.4:78310113-78310132 None:intergenic 30.0%
ATTATAGGTCTGCAACAAAT+TGG + chr5.4:78309462-78309481 MS.gene001629:intron 30.0%
ATTTCACTTCTATCATATCC+AGG + chr5.4:78309911-78309930 MS.gene001629:intron 30.0%
CATAAAAAAAGAAGGTGAGA+AGG - chr5.4:78308554-78308573 None:intergenic 30.0%
CTAGATCAAATTTGATGAAG+TGG + chr5.4:78309739-78309758 MS.gene001629:intron 30.0%
GATTAATAAGTTATCCTCCT+TGG - chr5.4:78309003-78309022 None:intergenic 30.0%
GGTGGAAAAATTTACATGTA+AGG + chr5.4:78310878-78310897 MS.gene001629:intron 30.0%
GTTGCAGACCTATAATTATT+GGG - chr5.4:78309458-78309477 None:intergenic 30.0%
TCCGCTAAAAAAACACAATT+AGG + chr5.4:78309516-78309535 MS.gene001629:intron 30.0%
TCGGCTAAAATAACTCAATT+AGG + chr5.4:78309711-78309730 MS.gene001629:intron 30.0%
TGATAATTAATGTGACTGAC+AGG + chr5.4:78310958-78310977 MS.gene001629:intron 30.0%
TGCTACAATAACTAGTATGT+TGG - chr5.4:78310330-78310349 None:intergenic 30.0%
TGTTGCAGACCTATAATTAT+TGG - chr5.4:78309459-78309478 None:intergenic 30.0%
TGTTTCATATAGGTTTGAAC+CGG + chr5.4:78310782-78310801 MS.gene001629:CDS 30.0%
! ATTGGTTTATAACATCCCTT+CGG + chr5.4:78310060-78310079 MS.gene001629:CDS 30.0%
! GAAAAGAACTTGGTGAAATT+AGG + chr5.4:78310851-78310870 MS.gene001629:CDS 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr5.4:78309133-78309152 None:intergenic 30.0%
!! AGGGAGTATTATATATAGAG+TGG + chr5.4:78309391-78309410 MS.gene001629:intron 30.0%
!! CATATTTCTAACTTTTGCAG+AGG + chr5.4:78308808-78308827 MS.gene001629:intron 30.0%
!! TACTCTTGTTATTCCAGAAT+TGG + chr5.4:78309848-78309867 MS.gene001629:CDS 30.0%
!! TCGATCTTCTTTTTGTTTCT+TGG + chr5.4:78308597-78308616 MS.gene001629:intron 30.0%
!!! ATTGAGTTATTTTAGCCGAA+TGG - chr5.4:78309710-78309729 None:intergenic 30.0%
!!! ATTGTGTTTTTTTAGCGGAA+TGG - chr5.4:78309515-78309534 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr5.4:78309134-78309153 MS.gene001629:intron 30.0%
!!! TTGTGTTTTTTTAGCGGAAT+GGG - chr5.4:78309514-78309533 None:intergenic 30.0%
AACAAACAACAATGGGAACA+TGG + chr5.4:78311267-78311286 MS.gene001629:CDS 35.0%
AACAGAAAAAACAAGCAGTC+TGG - chr5.4:78310766-78310785 None:intergenic 35.0%
AACATGGCTAAAATTCTAGC+TGG + chr5.4:78311283-78311302 MS.gene001629:CDS 35.0%
AACTCTTATGTCATTCCGAA+GGG - chr5.4:78310078-78310097 None:intergenic 35.0%
AATCCGTAAATTTGAGAGCA+TGG - chr5.4:78310485-78310504 None:intergenic 35.0%
AGAAAGTAAGAAGACATGGA+AGG + chr5.4:78310993-78311012 MS.gene001629:CDS 35.0%
AGCGTGTAAGTGTCTAATTA+AGG + chr5.4:78310213-78310232 MS.gene001629:intron 35.0%
ATGATGATCTACAAAAGCTG+AGG + chr5.4:78310445-78310464 MS.gene001629:CDS 35.0%
ATGTGATTTAAGAGACATCC+TGG - chr5.4:78309932-78309951 None:intergenic 35.0%
ATTGCATTACACAGGTTGTT+CGG + chr5.4:78310385-78310404 MS.gene001629:intron 35.0%
CAAATTGATACGAAAGCTCT+AGG + chr5.4:78310689-78310708 MS.gene001629:intron 35.0%
CAAATTTACGGATTCGATTC+AGG + chr5.4:78310491-78310510 MS.gene001629:CDS 35.0%
CATGAGATGAAAAAAGGACT+GGG - chr5.4:78308742-78308761 None:intergenic 35.0%
CTACCATGCTCTCAAATTTA+CGG + chr5.4:78310479-78310498 MS.gene001629:CDS 35.0%
CTCAATTATTTGATGCCGAT+TGG + chr5.4:78310042-78310061 MS.gene001629:CDS 35.0%
CTTAAATCAACAGAGAACAG+GGG + chr5.4:78308883-78308902 MS.gene001629:CDS 35.0%
GAAAAGAAAGAGAAGGCAAA+CGG - chr5.4:78308312-78308331 None:intergenic 35.0%
GCATGATGAAAAGAAAGAGA+AGG - chr5.4:78308319-78308338 None:intergenic 35.0%
GCATTTACAATAAAAGGGGA+AGG - chr5.4:78308356-78308375 None:intergenic 35.0%
GCTTAAATCAACAGAGAACA+GGG + chr5.4:78308882-78308901 MS.gene001629:CDS 35.0%
GGATACCTAACTTACAATGT+TGG - chr5.4:78310309-78310328 None:intergenic 35.0%
GTAAAGCAGCTACCAAATAT+GGG + chr5.4:78310098-78310117 MS.gene001629:CDS 35.0%
GTCTAATTAAGGTCCCTAAT+CGG + chr5.4:78310224-78310243 MS.gene001629:intron 35.0%
GTGAAGAGAAAGACACAAAT+GGG - chr5.4:78311198-78311217 None:intergenic 35.0%
TAGAAGGTAGTTGAAGTAGA+AGG - chr5.4:78308386-78308405 None:intergenic 35.0%
TCATGAGATGAAAAAAGGAC+TGG - chr5.4:78308743-78308762 None:intergenic 35.0%
TGAAGAGAAAGACACAAATG+GGG - chr5.4:78311197-78311216 None:intergenic 35.0%
TGAAGTGGATGCAATATTTC+TGG + chr5.4:78309754-78309773 MS.gene001629:intron 35.0%
TGAGAAGGTTGTTTGATTAC+CGG - chr5.4:78308539-78308558 None:intergenic 35.0%
TGGTTCCAACATTGTAAGTT+AGG + chr5.4:78310301-78310320 MS.gene001629:intron 35.0%
TGTAAAGCAGCTACCAAATA+TGG + chr5.4:78310097-78310116 MS.gene001629:CDS 35.0%
TGTGGATGATGCAATATTTC+TGG + chr5.4:78309600-78309619 MS.gene001629:intron 35.0%
TTCTTTCTCTTCACTGATGA+TGG - chr5.4:78308188-78308207 None:intergenic 35.0%
TTGATGAAAGGTTCCGATTA+GGG - chr5.4:78310240-78310259 None:intergenic 35.0%
TTGATTACCGGAATGTGAAA+TGG - chr5.4:78308527-78308546 None:intergenic 35.0%
TTTACTTGCAAAGTTGACAC+CGG - chr5.4:78308705-78308724 None:intergenic 35.0%
TTTGATGAAAGGTTCCGATT+AGG - chr5.4:78310241-78310260 None:intergenic 35.0%
TTTGTGGGTGCAAGAATTAT+AGG + chr5.4:78309643-78309662 MS.gene001629:intron 35.0%
! AACTTGGTGAAATTAGGAAG+CGG + chr5.4:78310857-78310876 MS.gene001629:CDS 35.0%
! ATTCTCTGGTTGCTATTATG+GGG + chr5.4:78310815-78310834 MS.gene001629:CDS 35.0%
! CATTCTCTGGTTGCTATTAT+GGG + chr5.4:78310814-78310833 MS.gene001629:CDS 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr5.4:78309264-78309283 MS.gene001629:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr5.4:78309268-78309287 MS.gene001629:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr5.4:78309332-78309351 MS.gene001629:intron 35.0%
!! CAGATTTTGTATGTGCCATT+CGG + chr5.4:78309692-78309711 MS.gene001629:intron 35.0%
AGGCAAATGAAGCTACTTAC+AGG + chr5.4:78308627-78308646 MS.gene001629:intron 40.0%
CAACTCTTATGTCATTCCGA+AGG - chr5.4:78310079-78310098 None:intergenic 40.0%
CCATGTCTTCTTACTTTCTC+AGG - chr5.4:78310992-78311011 None:intergenic 40.0%
CCTGAGAAAGTAAGAAGACA+TGG + chr5.4:78310989-78311008 MS.gene001629:CDS 40.0%
CGTGAAGAGAAAGACACAAA+TGG - chr5.4:78311199-78311218 None:intergenic 40.0%
CTACAGACTTTCTAATCTGC+TGG + chr5.4:78310422-78310441 MS.gene001629:CDS 40.0%
CTACTTACAGGCATGATCTA+TGG + chr5.4:78308639-78308658 MS.gene001629:CDS 40.0%
CTTTCCCAACTTCCATTCAA+AGG + chr5.4:78311144-78311163 MS.gene001629:CDS 40.0%
GATCGAATTTGACGAATGAG+TGG + chr5.4:78309547-78309566 MS.gene001629:intron 40.0%
GCAGATAATTGATGCTGTTG+TGG + chr5.4:78309806-78309825 MS.gene001629:intron 40.0%
GCTGAAGAATGGCATATCAA+AGG - chr5.4:78310629-78310648 None:intergenic 40.0%
GGCTAATACCAAAACTCATC+CGG + chr5.4:78308829-78308848 MS.gene001629:CDS 40.0%
GGCTTAAATCAACAGAGAAC+AGG + chr5.4:78308881-78308900 MS.gene001629:CDS 40.0%
GTCTCCTTTGAATGGAAGTT+GGG - chr5.4:78311151-78311170 None:intergenic 40.0%
GTTTCATCGCGCTACATTTA+AGG + chr5.4:78310559-78310578 MS.gene001629:CDS 40.0%
TAGCTAAGGTCTCCTTTGAA+TGG - chr5.4:78311159-78311178 None:intergenic 40.0%
TCAGGGAATGGGAAATTTGT+TGG + chr5.4:78310509-78310528 MS.gene001629:CDS 40.0%
TGAATGTATAGAGCAGTCCA+AGG + chr5.4:78308983-78309002 MS.gene001629:intron 40.0%
TGGAGAAATATATGGATGCG+AGG + chr5.4:78311096-78311115 MS.gene001629:CDS 40.0%
! CATCTTTCTGGAAAGACAAC+AGG + chr5.4:78309877-78309896 MS.gene001629:CDS 40.0%
! GCATTCTCTGGTTGCTATTA+TGG + chr5.4:78310813-78310832 MS.gene001629:CDS 40.0%
! GTGGCTTCTGGAGAAATATA+TGG + chr5.4:78311088-78311107 MS.gene001629:CDS 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr5.4:78309267-78309286 MS.gene001629:intron 40.0%
! TACTTGTTAATCGCAACCAG+TGG + chr5.4:78308857-78308876 MS.gene001629:CDS 40.0%
! TTCTCTGGTTGCTATTATGG+GGG + chr5.4:78310816-78310835 MS.gene001629:CDS 40.0%
!! GCGATTAACAAGTATCGATC+CGG - chr5.4:78308851-78308870 None:intergenic 40.0%
!! TGGGAAATTTGTTGGTTGAG+CGG + chr5.4:78310517-78310536 MS.gene001629:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr5.4:78309372-78309391 MS.gene001629:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr5.4:78309391-78309372 None:intergenic 40.0%
AAAGAGAAGGCAAACGGAGA+TGG - chr5.4:78308306-78308325 None:intergenic 45.0%
AAAGGAGACCTTAGCTACCA+AGG + chr5.4:78311162-78311181 MS.gene001629:CDS 45.0%
ACGCATTTGTATGTGGCTTC+TGG + chr5.4:78311076-78311095 MS.gene001629:CDS 45.0%
ACGGATTCGATTCAGGGAAT+GGG + chr5.4:78310498-78310517 MS.gene001629:CDS 45.0%
AGCATAAGACCAACTTCCTC+TGG - chr5.4:78311031-78311050 None:intergenic 45.0%
ATCTACAAAAGCTGAGGTGC+AGG + chr5.4:78310451-78310470 MS.gene001629:CDS 45.0%
ATGTATAGAGCAGTCCAAGG+AGG + chr5.4:78308986-78309005 MS.gene001629:intron 45.0%
CATAAGACCAACTTCCTCTG+GGG - chr5.4:78311029-78311048 None:intergenic 45.0%
CATATACAGTGCGTGTTCCA+AGG + chr5.4:78310138-78310157 MS.gene001629:CDS 45.0%
CCAGAGAATGCAAGCATATC+CGG - chr5.4:78310804-78310823 None:intergenic 45.0%
CTTAGCTACCAAGGAGGAAT+TGG + chr5.4:78311171-78311190 MS.gene001629:CDS 45.0%
CTTGGAACACGCACTGTATA+TGG - chr5.4:78310140-78310159 None:intergenic 45.0%
GAAAAAAGGACTGGGAGTCT+AGG - chr5.4:78308734-78308753 None:intergenic 45.0%
GACAAGTCCAGAAGACTCAT+CGG + chr5.4:78308224-78308243 MS.gene001629:CDS 45.0%
GCAATCGCCATTTCACATTC+CGG + chr5.4:78308517-78308536 MS.gene001629:CDS 45.0%
GCATAAGACCAACTTCCTCT+GGG - chr5.4:78311030-78311049 None:intergenic 45.0%
GCTGATCACATGCTGAAGAA+TGG - chr5.4:78310640-78310659 None:intergenic 45.0%
GGTCTCCTTTGAATGGAAGT+TGG - chr5.4:78311152-78311171 None:intergenic 45.0%
TACGGATTCGATTCAGGGAA+TGG + chr5.4:78310497-78310516 MS.gene001629:CDS 45.0%
TATATATAGAGTGGCGACCG+TGG + chr5.4:78309400-78309419 MS.gene001629:intron 45.0%
TCTACAAAAGCTGAGGTGCA+GGG + chr5.4:78310452-78310471 MS.gene001629:CDS 45.0%
TGTGTCTTTCTCTTCACGCA+TGG + chr5.4:78311201-78311220 MS.gene001629:CDS 45.0%
TTCTCTGCCTGTAGTAATGC+CGG + chr5.4:78308683-78308702 MS.gene001629:CDS 45.0%
TTGGTGAAATTAGGAAGCGG+TGG + chr5.4:78310860-78310879 MS.gene001629:CDS 45.0%
TTGTTAATCGCAACCAGTGG+AGG + chr5.4:78308860-78308879 MS.gene001629:CDS 45.0%
! CAATTCCTCCTTGGTAGCTA+AGG - chr5.4:78311173-78311192 None:intergenic 45.0%
! GGTCTTATGCTTAGAGCACT+AGG + chr5.4:78311040-78311059 MS.gene001629:CDS 45.0%
! TCTCTGGTTGCTATTATGGG+GGG + chr5.4:78310817-78310836 MS.gene001629:CDS 45.0%
!! AATGGCATATCAAAGGCACC+AGG - chr5.4:78310622-78310641 None:intergenic 45.0%
!! ATGGCATATCAAAGGCACCA+GGG - chr5.4:78310621-78310640 None:intergenic 45.0%
!! CTGTTGATTTAAGCCTCCAC+TGG - chr5.4:78308876-78308895 None:intergenic 45.0%
!! GTATCGATCCGGATGAGTTT+TGG - chr5.4:78308840-78308859 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr5.4:78309371-78309390 MS.gene001629:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr5.4:78309390-78309371 None:intergenic 45.0%
!!! AATTTTATTAATAAAAATTG+TGG + chr5.4:78310281-78310300 MS.gene001629:intron 5.0%
!!! AATTTTTATTAATAAAATTG+AGG - chr5.4:78310280-78310299 None:intergenic 5.0%
!!! ATTTTTATTAATAAAATTGA+GGG - chr5.4:78310279-78310298 None:intergenic 5.0%
AAATGGGGCCAATTCCTCCT+TGG - chr5.4:78311182-78311201 None:intergenic 50.0%
AAGGAGTCCGATGAGTCTTC+TGG - chr5.4:78308234-78308253 None:intergenic 50.0%
AGTTGGGAAAGAGAGCTCTG+AGG - chr5.4:78311135-78311154 None:intergenic 50.0%
CCGGATATGCTTGCATTCTC+TGG + chr5.4:78310801-78310820 MS.gene001629:CDS 50.0%
GTTGACACCGGCATTACTAC+AGG - chr5.4:78308693-78308712 None:intergenic 50.0%
! CATTTGGGGGTGCATTTCCT+TGG - chr5.4:78310158-78310177 None:intergenic 50.0%
! CTCTGGTTGCTATTATGGGG+GGG + chr5.4:78310818-78310837 MS.gene001629:CDS 50.0%
! GTTGGGAAAGAGAGCTCTGA+GGG - chr5.4:78311134-78311153 None:intergenic 50.0%
!! AAACGGAGATGGCGGAAATG+AGG - chr5.4:78308295-78308314 None:intergenic 50.0%
!! TTGGGAAAGAGAGCTCTGAG+GGG - chr5.4:78311133-78311152 None:intergenic 50.0%
AACGCGACCCTCGTAGCATT+TGG - chr5.4:78310174-78310193 None:intergenic 55.0%
ACACGCTTCTTGACCAGCAC+TGG - chr5.4:78310200-78310219 None:intergenic 55.0%
ACGCGACCCTCGTAGCATTT+GGG - chr5.4:78310173-78310192 None:intergenic 55.0%
ATGCACCCCCAAATGCTACG+AGG + chr5.4:78310163-78310182 MS.gene001629:CDS 55.0%
CCACTTACCCCAGAGGAAGT+TGG + chr5.4:78311019-78311038 MS.gene001629:CDS 55.0%
GAGAAGGCAAACGGAGATGG+CGG - chr5.4:78308303-78308322 None:intergenic 55.0%
GGAGACCTTAGCTACCAAGG+AGG + chr5.4:78311165-78311184 MS.gene001629:CDS 55.0%
GGCGAAGGAAACTGGCAAGA+AGG - chr5.4:78308253-78308272 None:intergenic 55.0%
TGCACCCCCAAATGCTACGA+GGG + chr5.4:78310164-78310183 MS.gene001629:CDS 55.0%
! AAGGTGTCCACTTACCCCAG+AGG + chr5.4:78311012-78311031 MS.gene001629:CDS 55.0%
!! CCAACTTCCTCTGGGGTAAG+TGG - chr5.4:78311022-78311041 None:intergenic 55.0%
CGCGACCCTCGTAGCATTTG+GGG - chr5.4:78310172-78310191 None:intergenic 60.0%
GAGACGACGGCGAAGGAAAC+TGG - chr5.4:78308261-78308280 None:intergenic 60.0%
GATGGATGAGACGACGGCGA+AGG - chr5.4:78308268-78308287 None:intergenic 60.0%
GCGACCCTCGTAGCATTTGG+GGG - chr5.4:78310171-78310190 None:intergenic 60.0%
GGAGGCGATGGATGAGACGA+CGG - chr5.4:78308274-78308293 None:intergenic 60.0%
TGGCGGAAATGAGGAGGCGA+TGG - chr5.4:78308286-78308305 None:intergenic 60.0%
! GGGTCGCGTTTTACCAGTGC+TGG + chr5.4:78310184-78310203 MS.gene001629:CDS 60.0%
!! AGAGAGCTCTGAGGGGTGCT+AGG - chr5.4:78311126-78311145 None:intergenic 60.0%
!! CGGAGATGGCGGAAATGAGG+AGG - chr5.4:78308292-78308311 None:intergenic 60.0%
!! GAGAGCTCTGAGGGGTGCTA+GGG - chr5.4:78311125-78311144 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 78308176 78311311 78308176 ID=MS.gene001629
chr5.4 mRNA 78308176 78311311 78308176 ID=MS.gene001629.t1;Parent=MS.gene001629
chr5.4 exon 78308176 78308367 78308176 ID=MS.gene001629.t1.exon1;Parent=MS.gene001629.t1
chr5.4 CDS 78308176 78308367 78308176 ID=cds.MS.gene001629.t1;Parent=MS.gene001629.t1
chr5.4 exon 78308476 78308538 78308476 ID=MS.gene001629.t1.exon2;Parent=MS.gene001629.t1
chr5.4 CDS 78308476 78308538 78308476 ID=cds.MS.gene001629.t1;Parent=MS.gene001629.t1
chr5.4 exon 78308629 78308719 78308629 ID=MS.gene001629.t1.exon3;Parent=MS.gene001629.t1
chr5.4 CDS 78308629 78308719 78308629 ID=cds.MS.gene001629.t1;Parent=MS.gene001629.t1
chr5.4 exon 78308828 78308904 78308828 ID=MS.gene001629.t1.exon4;Parent=MS.gene001629.t1
chr5.4 CDS 78308828 78308904 78308828 ID=cds.MS.gene001629.t1;Parent=MS.gene001629.t1
chr5.4 exon 78309810 78309902 78309810 ID=MS.gene001629.t1.exon5;Parent=MS.gene001629.t1
chr5.4 CDS 78309810 78309902 78309810 ID=cds.MS.gene001629.t1;Parent=MS.gene001629.t1
chr5.4 exon 78310035 78310217 78310035 ID=MS.gene001629.t1.exon6;Parent=MS.gene001629.t1
chr5.4 CDS 78310035 78310217 78310035 ID=cds.MS.gene001629.t1;Parent=MS.gene001629.t1
chr5.4 exon 78310399 78310580 78310399 ID=MS.gene001629.t1.exon7;Parent=MS.gene001629.t1
chr5.4 CDS 78310399 78310580 78310399 ID=cds.MS.gene001629.t1;Parent=MS.gene001629.t1
chr5.4 exon 78310705 78310894 78310705 ID=MS.gene001629.t1.exon8;Parent=MS.gene001629.t1
chr5.4 CDS 78310705 78310894 78310705 ID=cds.MS.gene001629.t1;Parent=MS.gene001629.t1
chr5.4 exon 78310980 78311311 78310980 ID=MS.gene001629.t1.exon9;Parent=MS.gene001629.t1
chr5.4 CDS 78310980 78311311 78310980 ID=cds.MS.gene001629.t1;Parent=MS.gene001629.t1
Gene Sequence

>MS.gene001629

ATGCATACACCATCATCAGTGAAGAGAAAGAAGAATCACACACACACAGACAAGTCCAGAAGACTCATCGGACTCCTTCTTGCCAGTTTCCTTCGCCGTCGTCTCATCCATCGCCTCCTCATTTCCGCCATCTCCGTTTGCCTTCTCTTTCTTTTCATCATGCTCTCACTCTTCGCTCCTTCCCCTTTTATTGTAAATGCTCTTCATCCTTCTACTTCAACTACCTTCTATTTCATTTATAATATATGCTTTTCGTCATTGCATTGTTCTGTTCTGTGTGTAACTTTGATTGTATTTCAGGAAAATGATTTGGTTAAATCTCGTTTAGATTCTCATCAGCAGCAATCGCCATTTCACATTCCGGTAATCAAACAACCTTCTCACCTTCTTTTTTTATGCATTTTGTGTTATGTTGCTAATATCGATCTTCTTTTTGTTTCTTGGAATTTGAAGGCAAATGAAGCTACTTACAGGCATGATCTATGGAATTCGAGAAACTCACAGCTTTTCTCTGCCTGTAGTAATGCCGGTGTCAACTTTGCAAGTAAACTTCATCCTAGACTCCCAGTCCTTTTTTCATCTCATGAATTGTAATTCCTATATTTAATTGCTTTTGATTGAGCGTATTTATTCATATTTCTAACTTTTGCAGAGGCTAATACCAAAACTCATCCGGATCGATACTTGTTAATCGCAACCAGTGGAGGCTTAAATCAACAGAGAACAGGGGTAATTAAGCTAAGCTTCTTTCTTAATGAACTGTGTCTGTGCTGTTGCTTTGTTTATGCAATCTTTTTAGTCAAGTAATGAATGTATAGAGCAGTCCAAGGAGGATAACTTATTAATCGGAATATGTACTTCTTTCTACATGTAACTAATTGTTTTATTTGAGTATGAATATTTCTTTCATTTGTTCAATTAGTAAACTTAATTGCATTCAAAATACTACTCCCTCCGTTTCAAAATGAGTGTCGTTTTAGGTGTTTACACACATATTAAGAAATGTAATGATTAAAAGAAAGAGAATGGTTATTTTACCAAATTATCCTTATTAACTATTGGTTAGTTTTAAAAGTAATACTTTGGAAGTAGTGTGCAGAGTATTAATTGGAGGGTACAATTGAAAAGAAAAAGTTATTATTGCATTGGAAACTGAAAGCGACACTCATTTTGAAACAAATTTTTTTGGCTAAAGCGACACTCATTTTGAAACGGAGGGAGTATTATATATAGAGTGGCGACCGTGGTCATTTACAAAAAGTATAGGTTGAAATCTCTACCCAATAATTATAGGTCTGCAACAAATTGGTGATTTGCTATACAGATTTTGTGTGTCCCATTCCGCTAAAAAAACACAATTAGGATTTTCTTGATCGAATTTGACGAATGAGTGGTGATACGAATTTGAATGATATATTACGTTATGTGGATGATGCAATATTTCTGGTATTGAAAAATTATAGATTGTTTGTGGGTGCAAGAATTATAGGTCTGCAAAAATTAGTGATTTGATATACAGATTTTGTATGTGCCATTCGGCTAAAATAACTCAATTAGGATTTTCTAGATCAAATTTGATGAAGTGGATGCAATATTTCTGGCATTGAAAAAATACAGATTGTTTGTGGGTGCAGATAATTGATGCTGTTGTGGCTGCCTATCTTTTGAATGCTACTCTTGTTATTCCAGAATTGGATCATACATCTTTCTGGAAAGACAACAGGTCTGTGTTTACATTTCACTTCTATCATATCCAGGATGTCTCTTAAATCACATATAATATTTTCTTTGGTAGCAGAACACATTTGTCATTGTACTCCTTAATTTGTATGTAATATTTGATTATTATTTTTTTGCAGCAATTTTCTCAATTATTTGATGCCGATTGGTTTATAACATCCCTTCGGAATGACATAAGAGTTGTAAAGCAGCTACCAAATATGGGAGAGAAATTTGTGACTCCATATACAGTGCGTGTTCCAAGGAAATGCACCCCCAAATGCTACGAGGGTCGCGTTTTACCAGTGCTGGTCAAGAAGCGTGTAAGTGTCTAATTAAGGTCCCTAATCGGAACCTTTCATCAAAATTATTTTCATGTATCCCTCAATTTTATTAATAAAAATTGTGGTTCCAACATTGTAAGTTAGGTATCCAACATACTAGTTATTGTAGCAAGTTGTGTTGATGCCATATGATTGTATAACATTTAATTGCATTACACAGGTTGTTCGGCTCACGAAGTTTGACTACAGACTTTCTAATCTGCTGGATGATGATCTACAAAAGCTGAGGTGCAGGGTAAACTACCATGCTCTCAAATTTACGGATTCGATTCAGGGAATGGGAAATTTGTTGGTTGAGCGGATGAGAATGAAAAGCATGCGTTTCATCGCGCTACATTTAAGGTAAGATTCCATTTGATTATTATAACTAAATATTTGTCCCTGGTGCCTTTGATATGCCATTCTTCAGCATGTGATCAGCTAAATCCTAAAACAATAATTTACATTTTTCAAATTGATACGAAAGCTCTAGGCCAACTTCAATTTCATTTTCTTTTCCGAAGTTCAATGTGATAATTGTTGATCCAGACTGCTTGTTTTTTCTGTTTCATATAGGTTTGAACCGGATATGCTTGCATTCTCTGGTTGCTATTATGGGGGGGAGAAAAGAAAGAAAAGAACTTGGTGAAATTAGGAAGCGGTGGAAAAATTTACATGTAAGGTTCTATGACATTCAAGATATCTTATTAACTGTATGAAATTTTGCATAATCTTACTATTGATAATTAATGTGACTGACAGGCAAGCAATCCTGAGAAAGTAAGAAGACATGGAAGGTGTCCACTTACCCCAGAGGAAGTTGGTCTTATGCTTAGAGCACTAGGTTTTGAAATTGAAACGCATTTGTATGTGGCTTCTGGAGAAATATATGGATGCGAGGAAACCCTAGCACCCCTCAGAGCTCTCTTTCCCAACTTCCATTCAAAGGAGACCTTAGCTACCAAGGAGGAATTGGCCCCATTTGTGTCTTTCTCTTCACGCATGGCTGCGCTTGATTACATAGTTTGTGATGACAGCGACGTTTTTGTAACAAACAACAATGGGAACATGGCTAAAATTCTAGCTGGAAGAAG
Protein sequence

>MS.gene001629.t1

MHTPSSVKRKKNHTHTDKSRRLIGLLLASFLRRRLIHRLLISAISVCLLFLFIMLSLFAPSPFIENDLVKSRLDSHQQQSPFHIPANEATYRHDLWNSRNSQLFSACSNAGVNFAKANTKTHPDRYLLIATSGGLNQQRTGIIDAVVAAYLLNATLVIPELDHTSFWKDNRSQFSQLFDADWFITSLRNDIRVVKQLPNMGEKFVTPYTVRVPRKCTPKCYEGRVLPVLVKKRVVRLTKFDYRLSNLLDDDLQKLRCRVNYHALKFTDSIQGMGNLLVERMRMKSMRFIALHLSSRPTSISFSFPKFNVIIVDPDCLFFLFHIGLNRICLHSLVAIMGGRKERKELGEIRKRWKNLHASNPEKVRRHGRCPLTPEEVGLMLRALGFEIETHLYVASGEIYGCEETLAPLRALFPNFHSKETLATKEELAPFVSFSSRMAALDYIVCDDSDVFVTNNNGNMAKILAGR