Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001729.t1 | XP_024640583.1 | 98.8 | 1059 | 13 | 0 | 1 | 1059 | 1 | 1059 | 0.00E+00 | 2046.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001729.t1 | Q8WTW3 | 23.9 | 992 | 616 | 26 | 25 | 957 | 16 | 927 | 3.3e-54 | 215.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001729.t1 | A0A396JZ67 | 98.8 | 1059 | 13 | 0 | 1 | 1059 | 1 | 1059 | 0.0e+00 | 2046.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene024389 | MS.gene001729 | PPI |
MS.gene22749 | MS.gene001729 | PPI |
MS.gene050696 | MS.gene001729 | PPI |
MS.gene001729 | MS.gene001540 | PPI |
MS.gene001729 | MS.gene025857 | PPI |
MS.gene22747 | MS.gene001729 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001729.t1 | MTR_1g492710 | 98.483 | 791 | 12 | 0 | 1 | 791 | 1 | 791 | 0.0 | 1608 |
MS.gene001729.t1 | MTR_1g492710 | 95.062 | 162 | 8 | 0 | 783 | 944 | 930 | 1091 | 5.99e-92 | 318 |
MS.gene001729.t1 | MTR_1g492720 | 100.000 | 59 | 0 | 0 | 945 | 1003 | 16 | 74 | 1.41e-31 | 119 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001729.t1 | AT5G16300 | 62.500 | 1080 | 372 | 14 | 1 | 1059 | 1 | 1068 | 0.0 | 1321 |
MS.gene001729.t1 | AT5G16300 | 60.890 | 1079 | 357 | 13 | 1 | 1059 | 1 | 1034 | 0.0 | 1276 |
MS.gene001729.t1 | AT5G16300 | 60.223 | 1076 | 365 | 14 | 5 | 1059 | 2 | 1035 | 0.0 | 1252 |
MS.gene001729.t1 | AT5G16300 | 61.561 | 1025 | 367 | 13 | 1 | 1004 | 1 | 1019 | 0.0 | 1240 |
Find 265 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAGGTGTTGGACTTGTTTC+TGG | 0.129159 | 1.3:+64293675 | MS.gene001729:intron |
TTGATACGCCGGAGAATATT+TGG | 0.133282 | 1.3:+64292758 | MS.gene001729:CDS |
TACTTGGTTCTCCCAGATTT+TGG | 0.137160 | 1.3:+64294829 | MS.gene001729:CDS |
CTCTGGTGGCGATTCAAATT+TGG | 0.140474 | 1.3:+64297877 | MS.gene001729:CDS |
CAATCATTGACTTGAGATTT+AGG | 0.165545 | 1.3:+64294283 | MS.gene001729:CDS |
TCTTGTCTTAATGCCTATTT+TGG | 0.191178 | 1.3:+64294498 | MS.gene001729:CDS |
TAAACTTGCATCAAGGTTAT+TGG | 0.209158 | 1.3:+64296922 | MS.gene001729:CDS |
TTAAGGTTTGTTTGTCTTCC+TGG | 0.233821 | 1.3:-64294939 | None:intergenic |
TCTAGGTTGGAAGCAGGTTT+GGG | 0.249144 | 1.3:+64299935 | MS.gene001729:intron |
TTCTAGGTTGGAAGCAGGTT+TGG | 0.258849 | 1.3:+64299934 | MS.gene001729:intron |
TGGAAGATGATTCTGATCTT+TGG | 0.258991 | 1.3:+64294220 | MS.gene001729:CDS |
AAACAAACCTTAACTCTAAA+AGG | 0.259558 | 1.3:+64294949 | MS.gene001729:CDS |
ACTTACTTCAGGACCAAAAT+AGG | 0.266675 | 1.3:-64294511 | None:intergenic |
TAACATTTACTTTGCAGATA+TGG | 0.267231 | 1.3:-64294636 | None:intergenic |
TATTCAATTCTTCCAATTCA+TGG | 0.270315 | 1.3:-64295022 | None:intergenic |
GTGCTAGATCCCTCAGTCTT+TGG | 0.274785 | 1.3:-64294614 | None:intergenic |
ATTCCCACTGGCCCAAAATC+TGG | 0.279074 | 1.3:-64294841 | None:intergenic |
GACTGAAATTCACTTTCTTC+AGG | 0.282420 | 1.3:-64294477 | None:intergenic |
GTATATGTTTAGAATGGTTT+TGG | 0.284554 | 1.3:-64294800 | None:intergenic |
TGCTAGATCCCTCAGTCTTT+GGG | 0.291204 | 1.3:-64294613 | None:intergenic |
TTGGGAATGGAGTTTGGTTC+GGG | 0.295422 | 1.3:-64292689 | None:intergenic |
TCTGCCACAGCAGCCTTGTT+TGG | 0.296679 | 1.3:+64294981 | MS.gene001729:CDS |
GCTCATCAAGTGACAGAAAA+AGG | 0.297837 | 1.3:+64297809 | MS.gene001729:CDS |
AATCATTGACTTGAGATTTA+GGG | 0.303397 | 1.3:+64294284 | MS.gene001729:CDS |
CTGTTTACGGGTTGAGGATT+CGG | 0.308969 | 1.3:-64292497 | None:intergenic |
CTAGTGAAACATTCTCGTTT+TGG | 0.316077 | 1.3:+64294891 | MS.gene001729:CDS |
TAGGATTCGGGAACTCGTTT+TGG | 0.320530 | 1.3:+64294200 | MS.gene001729:CDS |
CAAAGCTTAACTTCCTCTTC+AGG | 0.325723 | 1.3:-64293919 | None:intergenic |
CTCTCATTCTCCCAGAGATA+TGG | 0.340747 | 1.3:-64298324 | None:intergenic |
CCTACAACTTATGGATACTA+TGG | 0.344473 | 1.3:+64295072 | MS.gene001729:CDS |
GATGGGGTGAATGTCTTCTT+TGG | 0.353422 | 1.3:-64299405 | None:intergenic |
TGATACGCCGGAGAATATTT+GGG | 0.353456 | 1.3:+64292759 | MS.gene001729:CDS |
CTAAGAGAAGACTTTGCCTT+TGG | 0.354459 | 1.3:-64297920 | None:intergenic |
AATGCGGTGGTCGTCGGCGT+GGG | 0.355766 | 1.3:-64292407 | None:intergenic |
TCGGGATTGGGAATGGAGTT+TGG | 0.356270 | 1.3:-64292695 | None:intergenic |
CCACCAGCTTCACAATTGTT+TGG | 0.359106 | 1.3:+64293883 | MS.gene001729:CDS |
TTCTGTCTTGTGTGATGTGT+TGG | 0.362077 | 1.3:+64293768 | MS.gene001729:CDS |
CAAACACCGCCTGCTGTATA+AGG | 0.362242 | 1.3:-64294399 | None:intergenic |
GTATTAGAGCCTACAACTTA+TGG | 0.363762 | 1.3:+64295063 | MS.gene001729:CDS |
GGAAGATGATTCTGATCTTT+GGG | 0.364524 | 1.3:+64294221 | MS.gene001729:CDS |
GTCGTGGATATCGCAAGTTT+TGG | 0.367262 | 1.3:+64293708 | MS.gene001729:CDS |
TCGAATCTCGGCGATGGGTT+TGG | 0.372072 | 1.3:-64292470 | None:intergenic |
AGTTGCCTTGGAGTAGGATT+CGG | 0.376951 | 1.3:+64294187 | MS.gene001729:CDS |
GCCTTAACTTTGAGCACGCC+TGG | 0.378141 | 1.3:+64295146 | MS.gene001729:CDS |
CTTATACAGCAGGCGGTGTT+TGG | 0.379413 | 1.3:+64294400 | MS.gene001729:CDS |
TCCCTGATTCGACTTACTTC+AGG | 0.380422 | 1.3:-64294522 | None:intergenic |
TTAACTTCCTCTTCAGGATT+GGG | 0.381330 | 1.3:-64293913 | None:intergenic |
CAAGAATGACTTTGTAGAAA+AGG | 0.383535 | 1.3:-64293855 | None:intergenic |
GTCCTGAAGTAAGTCGAATC+AGG | 0.384077 | 1.3:+64294520 | MS.gene001729:CDS |
ATTGGGAATGGAGTTTGGTT+CGG | 0.384204 | 1.3:-64292690 | None:intergenic |
CTTAACTTCCTCTTCAGGAT+TGG | 0.385326 | 1.3:-64293914 | None:intergenic |
AGAAGATGCAAGCCATGAAT+TGG | 0.386596 | 1.3:+64295010 | MS.gene001729:CDS |
TGGATGACAGCTCAAGTCTT+GGG | 0.386894 | 1.3:+64299499 | MS.gene001729:CDS |
GTGGCGATTCAAATTTGGTT+GGG | 0.388856 | 1.3:+64297882 | MS.gene001729:CDS |
GGGTCATCATCAATCTGATC+TGG | 0.389500 | 1.3:-64300097 | None:intergenic |
CTTCCGCGGAGAAATCAATA+AGG | 0.394324 | 1.3:+64294091 | MS.gene001729:CDS |
GTATTAGATTCTGAATTAGT+AGG | 0.398427 | 1.3:-64298429 | None:intergenic |
CTCAGTCTTTGGGAGGCCTT+CGG | 0.399852 | 1.3:-64294603 | None:intergenic |
GTTGCCTTGGAGTAGGATTC+GGG | 0.401004 | 1.3:+64294188 | MS.gene001729:CDS |
AAGAATGACTTTGTAGAAAA+GGG | 0.403222 | 1.3:-64293854 | None:intergenic |
AAATCTCTTCAAGAAGTTCA+TGG | 0.404740 | 1.3:+64299436 | MS.gene001729:CDS |
CTGAAGAGGAAGTTAAGCTT+TGG | 0.406834 | 1.3:+64293920 | MS.gene001729:CDS |
TAAGAGAAGACTTTGCCTTT+GGG | 0.409198 | 1.3:-64297919 | None:intergenic |
TTTGTCATTGATGTTCTCTC+TGG | 0.410244 | 1.3:+64297860 | MS.gene001729:CDS |
TGATGTGTTGGGAATCATTC+AGG | 0.411058 | 1.3:+64293780 | MS.gene001729:CDS |
GGAAAGTAAACAAGTTCTAC+AGG | 0.414373 | 1.3:+64294122 | MS.gene001729:CDS |
AGATAAGCTGGAATCGGTTA+TGG | 0.414553 | 1.3:+64293954 | MS.gene001729:CDS |
GCAGCGGCTATGTCCACATT+TGG | 0.416741 | 1.3:+64300024 | MS.gene001729:CDS |
CTGATTAGACCGTTCTCTAA+TGG | 0.417724 | 1.3:-64297975 | None:intergenic |
GTTCCCGCTGCCGGAGAGGA+TGG | 0.418700 | 1.3:-64292382 | None:intergenic |
TCCATTCCCAATCCCGAGCC+TGG | 0.421161 | 1.3:+64292701 | MS.gene001729:CDS |
AAGCTCCTGGCCACTGCCAA+TGG | 0.422355 | 1.3:-64294067 | None:intergenic |
CCATAGTATCCATAAGTTGT+AGG | 0.423408 | 1.3:-64295072 | None:intergenic |
TCTTTCTCAAAAGATAAATC+TGG | 0.424373 | 1.3:+64299479 | MS.gene001729:CDS |
GAAGAGATTTCATTTGAAGA+TGG | 0.424725 | 1.3:-64299423 | None:intergenic |
GTCGATCTGTTTACGGGTTG+AGG | 0.425080 | 1.3:-64292503 | None:intergenic |
TGCATCAAGGTTATTGGAAA+AGG | 0.425874 | 1.3:+64296928 | MS.gene001729:CDS |
GACCACCGCATTTCCACTTC+CGG | 0.425926 | 1.3:+64292418 | MS.gene001729:CDS |
GCCTTTCTTTCCACTGAAGT+GGG | 0.425997 | 1.3:+64297782 | MS.gene001729:CDS |
GTAAGTCCAGGCTCGGGATT+GGG | 0.427588 | 1.3:-64292707 | None:intergenic |
CATCTGAACATCATTCTGTT+TGG | 0.427866 | 1.3:-64294364 | None:intergenic |
CCCAGGCGTGCTCAAAGTTA+AGG | 0.428583 | 1.3:-64295147 | None:intergenic |
ACTGAAATTCACTTTCTTCA+GGG | 0.430090 | 1.3:-64294476 | None:intergenic |
TCTGTCTTGTGTGATGTGTT+GGG | 0.432407 | 1.3:+64293769 | MS.gene001729:CDS |
TTTGGTTCGGGATTGAGATT+CGG | 0.432821 | 1.3:-64292677 | None:intergenic |
AAAGGTATGAACCATATCTC+TGG | 0.433620 | 1.3:+64298313 | MS.gene001729:intron |
GGGAATCATTCAGGTCACTC+TGG | 0.435233 | 1.3:+64293789 | MS.gene001729:CDS |
TTTGTCGTCGATCTGTTTAC+GGG | 0.435378 | 1.3:-64292509 | None:intergenic |
CAATCCCGAGCCTGGACTTA+CGG | 0.438237 | 1.3:+64292709 | MS.gene001729:CDS |
ATCAGACTGATCTTGCTTGA+CGG | 0.443865 | 1.3:-64296771 | None:intergenic |
GCTTGCTGCTATTGTCTCTC+AGG | 0.444950 | 1.3:+64295106 | MS.gene001729:CDS |
AAACATATACCCTTGATACT+TGG | 0.448713 | 1.3:+64294813 | MS.gene001729:CDS |
TCATGGAATTCAATTACAAA+TGG | 0.449641 | 1.3:+64299453 | MS.gene001729:CDS |
CGTAAGTCCAGGCTCGGGAT+TGG | 0.451443 | 1.3:-64292708 | None:intergenic |
GGATTCGGTGTTTCGAATCT+CGG | 0.452411 | 1.3:-64292482 | None:intergenic |
GAAGAATTGAATAAGACTAT+AGG | 0.452669 | 1.3:+64295032 | MS.gene001729:CDS |
TTTGGATTCTGATGAGGGTA+AGG | 0.452923 | 1.3:+64292858 | MS.gene001729:CDS |
GTCCCATCCTCTCCGGCAGC+GGG | 0.454699 | 1.3:+64292379 | MS.gene001729:CDS |
AAGAGATTTCATTTGAAGAT+GGG | 0.456289 | 1.3:-64299422 | None:intergenic |
AGAAATTTAATTGATGCCAT+TGG | 0.456984 | 1.3:+64294051 | MS.gene001729:CDS |
TGCATCGCGGTAGCCGGAAG+TGG | 0.461378 | 1.3:-64292431 | None:intergenic |
CAGCTTCACAATTGTTTGGC+GGG | 0.462106 | 1.3:+64293887 | MS.gene001729:CDS |
TGGCTGAGATTGTCAAACTT+TGG | 0.462256 | 1.3:-64297955 | None:intergenic |
TCAAGGGTATATGTTTAGAA+TGG | 0.463200 | 1.3:-64294806 | None:intergenic |
GGTTTAAATACCTCCCCATC+AGG | 0.463246 | 1.3:+64298475 | MS.gene001729:CDS |
TGAGGGTAAGGTTAAGATCT+TGG | 0.463258 | 1.3:+64292870 | MS.gene001729:CDS |
AGAAGACCAGCTGCCTGAGC+AGG | 0.465139 | 1.3:-64300057 | None:intergenic |
CTGGATGACAGCTCAAGTCT+TGG | 0.465347 | 1.3:+64299498 | MS.gene001729:CDS |
GGCCTTTCTTTCCACTGAAG+TGG | 0.465406 | 1.3:+64297781 | MS.gene001729:CDS |
TGGAGATATTCTACCTGCTC+AGG | 0.465773 | 1.3:+64300044 | MS.gene001729:CDS |
GCGTGGGGTGTTCCCGCTGC+CGG | 0.466673 | 1.3:-64292391 | None:intergenic |
TCAGGTCACTCTGGGTCAGG+TGG | 0.469957 | 1.3:+64293798 | MS.gene001729:CDS |
GATCTGAGATTGAGTTGCCT+TGG | 0.470997 | 1.3:+64294175 | MS.gene001729:CDS |
GGTCTAATCAGTTGTTAAAC+CGG | 0.471854 | 1.3:+64297987 | MS.gene001729:CDS |
AAACCGGCTTTCTCAGAGAC+TGG | 0.473732 | 1.3:+64298003 | MS.gene001729:CDS |
TCAGATCTCGCAGCGGAGTC+GGG | 0.474276 | 1.3:+64292945 | MS.gene001729:CDS |
TGATGGGGAGGTATTTAAAC+CGG | 0.475659 | 1.3:-64298473 | None:intergenic |
TCTCCGCGGAAGCAAGCTCC+TGG | 0.476685 | 1.3:-64294080 | None:intergenic |
ACAGGTGGTTGGAATCTTTG+AGG | 0.478209 | 1.3:+64297760 | MS.gene001729:intron |
ACTTACGTAAGCCAGTCTAT+AGG | 0.479011 | 1.3:-64298028 | None:intergenic |
ATTCTACCTGCTCAGGCAGC+TGG | 0.479804 | 1.3:+64300051 | MS.gene001729:CDS |
GTCTTCTCTTAGAAGAAAGC+AGG | 0.480005 | 1.3:+64297931 | MS.gene001729:CDS |
GTGTTTCGAATCTCGGCGAT+GGG | 0.482849 | 1.3:-64292475 | None:intergenic |
CATTCAGGTCACTCTGGGTC+AGG | 0.483438 | 1.3:+64293795 | MS.gene001729:CDS |
TTAATTGATGCCATTGGCAG+TGG | 0.486951 | 1.3:+64294057 | MS.gene001729:CDS |
TTCCCACTGGCCCAAAATCT+GGG | 0.488521 | 1.3:-64294840 | None:intergenic |
ACAAACAACATTACCTTCTC+CGG | 0.489314 | 1.3:-64293048 | None:intergenic |
GGTGGCGATTCAAATTTGGT+TGG | 0.491145 | 1.3:+64297881 | MS.gene001729:CDS |
AGTCCCATCCTCTCCGGCAG+CGG | 0.494366 | 1.3:+64292378 | MS.gene001729:CDS |
GTCATTGATGTTCTCTCTGG+TGG | 0.495949 | 1.3:+64297863 | MS.gene001729:CDS |
TCTGGGAGAACCAAGTATCA+AGG | 0.496917 | 1.3:-64294823 | None:intergenic |
CCGCCAAACAATTGTGAAGC+TGG | 0.498037 | 1.3:-64293886 | None:intergenic |
TTCCCGCTGCCGGAGAGGAT+GGG | 0.498120 | 1.3:-64292381 | None:intergenic |
ATTTGGGGATGTCTTGATGA+AGG | 0.500777 | 1.3:+64292775 | MS.gene001729:CDS |
TTCGGGATTGAGATTCGGAC+TGG | 0.502450 | 1.3:-64292672 | None:intergenic |
AGACTCTGCATCGCGGTAGC+CGG | 0.505054 | 1.3:-64292437 | None:intergenic |
CCAGCTTCACAATTGTTTGG+CGG | 0.505359 | 1.3:+64293886 | MS.gene001729:CDS |
TGATGCCATTGGCAGTGGCC+AGG | 0.505848 | 1.3:+64294062 | MS.gene001729:CDS |
CGAGAATGTTTCACTAGAGA+TGG | 0.508905 | 1.3:-64294885 | None:intergenic |
TCCAGGCTCGGGATTGGGAA+TGG | 0.509168 | 1.3:-64292702 | None:intergenic |
TTCCTCTTCTTCAGCATCAG+TGG | 0.509680 | 1.3:+64292899 | MS.gene001729:CDS |
CTCAGATCTCGCAGCGGAGT+CGG | 0.511516 | 1.3:+64292944 | MS.gene001729:CDS |
TGCTCCAAACAAGGCTGCTG+TGG | 0.512339 | 1.3:-64294985 | None:intergenic |
AAATGCGGTGGTCGTCGGCG+TGG | 0.512764 | 1.3:-64292408 | None:intergenic |
TGGCCAGGAGCTTGCTTCCG+CGG | 0.514245 | 1.3:+64294077 | MS.gene001729:CDS |
ACCGCCTGCTGTATAAGGTC+TGG | 0.515915 | 1.3:-64294394 | None:intergenic |
ACCCACTTCAGTGGAAAGAA+AGG | 0.517882 | 1.3:-64297783 | None:intergenic |
TGGCGATTCAAATTTGGTTG+GGG | 0.518062 | 1.3:+64297883 | MS.gene001729:CDS |
ATCTTCTCTTGCTCCAAACA+AGG | 0.518368 | 1.3:-64294994 | None:intergenic |
AACGGTTACCGACGAGTTGA+CGG | 0.518579 | 1.3:-64292543 | None:intergenic |
TTCTACAGGGGAGTCTAGAA+TGG | 0.519002 | 1.3:+64294136 | MS.gene001729:CDS |
AGTGGAAATGCGGTGGTCGT+CGG | 0.519750 | 1.3:-64292413 | None:intergenic |
ATGCGGTGGTCGTCGGCGTG+GGG | 0.521294 | 1.3:-64292406 | None:intergenic |
CGATGAATTTCAGCCGGAGA+AGG | 0.522546 | 1.3:+64293035 | MS.gene001729:CDS |
TGCCACTGATGCTGAAGAAG+AGG | 0.523386 | 1.3:-64292901 | None:intergenic |
AACACAATTTCTGCAGCAGT+TGG | 0.526156 | 1.3:+64294333 | MS.gene001729:CDS |
GGTGTTTCGAATCTCGGCGA+TGG | 0.526162 | 1.3:-64292476 | None:intergenic |
TGAGGTGTTCTACAGTTCCC+CGG | 0.527851 | 1.3:+64298454 | MS.gene001729:CDS |
GAAGAAGTTCATCGAGTTGG+AGG | 0.528343 | 1.3:+64296872 | MS.gene001729:CDS |
GGCCCTCTAGAGGACAATGC+TGG | 0.528993 | 1.3:-64299384 | None:intergenic |
GGAATCATTCAGGTCACTCT+GGG | 0.530902 | 1.3:+64293790 | MS.gene001729:CDS |
CATGAGAGTCCCATCCTCTC+CGG | 0.531528 | 1.3:+64292372 | None:intergenic |
AGATTGAGTTGCCTTGGAGT+AGG | 0.532804 | 1.3:+64294181 | MS.gene001729:CDS |
CAATATCAAACTGACCTGAT+GGG | 0.532941 | 1.3:-64298489 | None:intergenic |
AGTGGGAATGCATCTACAGT+TGG | 0.533871 | 1.3:+64294855 | MS.gene001729:CDS |
ATGCTAACTGATGGGCAAGT+TGG | 0.535035 | 1.3:+64299982 | MS.gene001729:CDS |
ATATAGAGAGAAGGCATAGA+CGG | 0.535269 | 1.3:-64296824 | None:intergenic |
GTGGGAATGCATCTACAGTT+GGG | 0.536592 | 1.3:+64294856 | MS.gene001729:CDS |
GCACGCGATGCCGTAAGTCC+AGG | 0.537198 | 1.3:-64292719 | None:intergenic |
CGATGCCGTAAGTCCAGGCT+CGG | 0.538406 | 1.3:-64292714 | None:intergenic |
CTTTGGGATGAGATATTTGA+GGG | 0.538918 | 1.3:+64294237 | MS.gene001729:CDS |
CGGAGAGGATGGGACTCTCA+TGG | 0.540821 | 1.3:-64292371 | None:intergenic |
TTTCATGTTGACGATGGAGT+CGG | 0.541804 | 1.3:-64292587 | None:intergenic |
TGTGAAGAAGTTCATCGAGT+TGG | 0.544251 | 1.3:+64296869 | MS.gene001729:CDS |
AACTTTGAGCACGCCTGGGA+GGG | 0.546184 | 1.3:+64295151 | MS.gene001729:CDS |
AGAGATTTCATTTGAAGATG+GGG | 0.546216 | 1.3:-64299421 | None:intergenic |
CCTTAACTTTGAGCACGCCT+GGG | 0.547017 | 1.3:+64295147 | MS.gene001729:CDS |
TCTTTGGGATGAGATATTTG+AGG | 0.548135 | 1.3:+64294236 | MS.gene001729:CDS |
TATAGAGAGAAGGCATAGAC+GGG | 0.549045 | 1.3:-64296823 | None:intergenic |
CTGGGATCAATGCTAACTGA+TGG | 0.549686 | 1.3:+64299973 | MS.gene001729:CDS |
AATGAGATTATATAGAGAGA+AGG | 0.550213 | 1.3:-64296833 | None:intergenic |
GGGTGTTCCCGCTGCCGGAG+AGG | 0.553714 | 1.3:-64292386 | None:intergenic |
TTCTGGAATCGAGGAAGTCG+TGG | 0.555193 | 1.3:+64293692 | MS.gene001729:CDS |
AACTGTAGATGCATTCCCAC+TGG | 0.555315 | 1.3:-64294853 | None:intergenic |
TTTCTTTCCACTGAAGTGGG+TGG | 0.557146 | 1.3:+64297785 | MS.gene001729:CDS |
CAGGTCACTCTGGGTCAGGT+GGG | 0.557190 | 1.3:+64293799 | MS.gene001729:CDS |
GCTCCAGCATTGTCCTCTAG+AGG | 0.560921 | 1.3:+64299381 | MS.gene001729:CDS |
GAAATCAATAAGGGAGACAA+TGG | 0.561377 | 1.3:+64294101 | MS.gene001729:CDS |
TTCCGCGGAGAAATCAATAA+GGG | 0.562678 | 1.3:+64294092 | MS.gene001729:CDS |
TGTTATCGATGAATTTCAGC+CGG | 0.567099 | 1.3:+64293029 | MS.gene001729:CDS |
AAGGTATGAACCATATCTCT+GGG | 0.568167 | 1.3:+64298314 | MS.gene001729:intron |
GGTCATCATCAATCTGATCT+GGG | 0.568388 | 1.3:-64300096 | None:intergenic |
TCTGCTATCTGTGATAGTCC+AGG | 0.568587 | 1.3:+64294921 | MS.gene001729:CDS |
TCAGTCTGATGAGAACCAAT+CGG | 0.570120 | 1.3:+64296784 | MS.gene001729:CDS |
TGTCTTCTTTGGCCCTCTAG+AGG | 0.571932 | 1.3:-64299394 | None:intergenic |
AGACATCCCCAAATATTCTC+CGG | 0.572034 | 1.3:-64292766 | None:intergenic |
AAAATGTCACTTACCCTCCC+AGG | 0.572386 | 1.3:-64295164 | None:intergenic |
ATGAGCACCACCCACTTCAG+TGG | 0.574773 | 1.3:-64297792 | None:intergenic |
AGCGGAGATTGCGGTGCATG+AGG | 0.575698 | 1.3:-64292611 | None:intergenic |
AGAACGAATGCGATCGTGAA+CGG | 0.575714 | 1.3:-64292644 | None:intergenic |
CGGGATCGTTTGCTTGATCG+TGG | 0.576724 | 1.3:+64292964 | MS.gene001729:CDS |
CTGGGAGAACCAAGTATCAA+GGG | 0.578029 | 1.3:-64294822 | None:intergenic |
TCGGGATTGAGATTCGGACT+GGG | 0.587511 | 1.3:-64292671 | None:intergenic |
GTTAACCAGCACGGTTGATG+TGG | 0.588280 | 1.3:+64294308 | MS.gene001729:CDS |
CATGTTGACGATGGAGTCGG+CGG | 0.589713 | 1.3:-64292584 | None:intergenic |
TTGACCAGACCTTATACAGC+AGG | 0.590278 | 1.3:+64294390 | MS.gene001729:CDS |
GATACGCCGGAGAATATTTG+GGG | 0.591429 | 1.3:+64292760 | MS.gene001729:CDS |
GAAGAGCTCCGTCAACTCGT+CGG | 0.591523 | 1.3:+64292535 | MS.gene001729:CDS |
AGTCGATGAGGTCACGGTAA+CGG | 0.591952 | 1.3:-64292561 | None:intergenic |
TGATAGTTTATATGTCTCGA+TGG | 0.592465 | 1.3:+64294701 | MS.gene001729:CDS |
GTTCACCACATCAACCGTGC+TGG | 0.593350 | 1.3:-64294313 | None:intergenic |
AGAGACTGGATCCTATAGAC+TGG | 0.594900 | 1.3:+64298017 | MS.gene001729:CDS |
TGGGATCAATGCTAACTGAT+GGG | 0.595228 | 1.3:+64299974 | MS.gene001729:CDS |
GGATGACAGCTCAAGTCTTG+GGG | 0.597612 | 1.3:+64299500 | MS.gene001729:CDS |
GTGAACGGCGGTGATGTTAG+CGG | 0.598642 | 1.3:-64292629 | None:intergenic |
GATGCCGTAAGTCCAGGCTC+GGG | 0.598897 | 1.3:-64292713 | None:intergenic |
TTATATGTCTCGATGGAAAG+TGG | 0.599105 | 1.3:+64294708 | MS.gene001729:CDS |
CGGGATTCCCAATCCTGAAG+AGG | 0.601860 | 1.3:+64293906 | MS.gene001729:CDS |
TCTTCTCTTAGAAGAAAGCA+GGG | 0.604861 | 1.3:+64297932 | MS.gene001729:CDS |
CGGCGGAGTCGATGAGGTCA+CGG | 0.605056 | 1.3:-64292567 | None:intergenic |
GATCCAGTCTCTGAGAAAGC+CGG | 0.605086 | 1.3:-64298006 | None:intergenic |
CATATCTCTGGGAGAATGAG+AGG | 0.605460 | 1.3:+64298325 | MS.gene001729:CDS |
CGAAGGCCTCCCAAAGACTG+AGG | 0.606469 | 1.3:+64294604 | MS.gene001729:CDS |
TAACTTTGAGCACGCCTGGG+AGG | 0.607220 | 1.3:+64295150 | MS.gene001729:CDS |
CTCCAGCATTGTCCTCTAGA+GGG | 0.608602 | 1.3:+64299382 | MS.gene001729:CDS |
TCCTGAAGTAAGTCGAATCA+GGG | 0.610907 | 1.3:+64294521 | MS.gene001729:CDS |
CAAGTATCTTGTTGATACGC+CGG | 0.611300 | 1.3:+64292747 | MS.gene001729:CDS |
CCAAACAATTGTGAAGCTGG+TGG | 0.612633 | 1.3:-64293883 | None:intergenic |
AAGTTTCTTAGAATCTCCGA+AGG | 0.612765 | 1.3:+64294587 | MS.gene001729:CDS |
AATATCAAACTGACCTGATG+GGG | 0.614646 | 1.3:-64298488 | None:intergenic |
CACAAAAGAAGAATCGTCAC+CGG | 0.618519 | 1.3:-64293743 | None:intergenic |
GAAGGCCTCCCAAAGACTGA+GGG | 0.619317 | 1.3:+64294605 | MS.gene001729:CDS |
CTAGGTTGGAAGCAGGTTTG+GGG | 0.621040 | 1.3:+64299936 | MS.gene001729:intron |
GATGGGGAGGTATTTAAACC+GGG | 0.621555 | 1.3:-64298472 | None:intergenic |
ATCAAACTGACCTGATGGGG+AGG | 0.624136 | 1.3:-64298485 | None:intergenic |
TGGACTTGTTTCTGGAATCG+AGG | 0.625618 | 1.3:+64293683 | MS.gene001729:CDS |
AGCCGGAAGTGGAAATGCGG+TGG | 0.627371 | 1.3:-64292420 | None:intergenic |
AGAATGACTTTGTAGAAAAG+GGG | 0.628281 | 1.3:-64293853 | None:intergenic |
TTCTTGTCAGAGCATCCTTG+AGG | 0.630385 | 1.3:+64294557 | MS.gene001729:CDS |
GTTTACTTAACAGGGATGGG+AGG | 0.633012 | 1.3:+64296742 | MS.gene001729:intron |
TAGATCCCTCAGTCTTTGGG+AGG | 0.634391 | 1.3:-64294610 | None:intergenic |
GAAATTCACTTTCTTCAGGG+TGG | 0.634719 | 1.3:-64294473 | None:intergenic |
GGAATTATCTAATAACCCAA+AGG | 0.640432 | 1.3:+64297904 | MS.gene001729:CDS |
GAAAGTAAACAAGTTCTACA+GGG | 0.640980 | 1.3:+64294123 | MS.gene001729:CDS |
TGACAGCTCAAGTCTTGGGG+TGG | 0.641795 | 1.3:+64299503 | MS.gene001729:CDS |
ATTTAGGGAGTTAACCAGCA+CGG | 0.645100 | 1.3:+64294299 | MS.gene001729:CDS |
AGAAACTTAACAGATCCTCA+AGG | 0.648118 | 1.3:-64294572 | None:intergenic |
AGGTAGAATATCTCCAAATG+TGG | 0.648626 | 1.3:-64300037 | None:intergenic |
CAATCTCAGCCATTAGAGAA+CGG | 0.648660 | 1.3:+64297966 | MS.gene001729:CDS |
GATGGAAAGTGGTGACAAAG+AGG | 0.649981 | 1.3:+64294719 | MS.gene001729:CDS |
AGTTCCCGAATCCTACTCCA+AGG | 0.652818 | 1.3:-64294192 | None:intergenic |
TCTCGGCGATGGGTTTGGTG+CGG | 0.653566 | 1.3:-64292465 | None:intergenic |
TGGAGTCGGCGGAGTCGATG+AGG | 0.661209 | 1.3:-64292573 | None:intergenic |
TGAGGATTTCATGTTGACGA+TGG | 0.661877 | 1.3:-64292593 | None:intergenic |
GGTGATGTTAGCGGAGATTG+CGG | 0.663510 | 1.3:-64292620 | None:intergenic |
ACCAGACCTTATACAGCAGG+CGG | 0.668431 | 1.3:+64294393 | MS.gene001729:CDS |
CTCCCTTATTGATTTCTCCG+CGG | 0.673803 | 1.3:-64294094 | None:intergenic |
ATTCAGAATCTAATACTCTG+AGG | 0.683698 | 1.3:+64298436 | MS.gene001729:CDS |
TTAGAGCTCAGATCTCGCAG+CGG | 0.695588 | 1.3:+64292938 | MS.gene001729:CDS |
AAAGTAAACAAGTTCTACAG+GGG | 0.712947 | 1.3:+64294124 | MS.gene001729:CDS |
ACGAATGCGATCGTGAACGG+CGG | 0.720227 | 1.3:-64292641 | None:intergenic |
GGTAGCCGGAAGTGGAAATG+CGG | 0.722038 | 1.3:-64292423 | None:intergenic |
TATCAACAAGATACTTGACA+CGG | 0.731031 | 1.3:-64292741 | None:intergenic |
ATGGGGAGGTATTTAAACCG+GGG | 0.735896 | 1.3:-64298471 | None:intergenic |
GGAAGAGAGACTCTGCATCG+CGG | 0.773308 | 1.3:-64292444 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 64292373 | 64300110 | 64292373 | ID=MS.gene001729 |
chr1.3 | mRNA | 64292373 | 64300110 | 64292373 | ID=MS.gene001729.t1;Parent=MS.gene001729 |
chr1.3 | exon | 64292373 | 64293056 | 64292373 | ID=MS.gene001729.t1.exon1;Parent=MS.gene001729.t1 |
chr1.3 | CDS | 64292373 | 64293056 | 64292373 | ID=cds.MS.gene001729.t1;Parent=MS.gene001729.t1 |
chr1.3 | exon | 64293679 | 64295172 | 64293679 | ID=MS.gene001729.t1.exon2;Parent=MS.gene001729.t1 |
chr1.3 | CDS | 64293679 | 64295172 | 64293679 | ID=cds.MS.gene001729.t1;Parent=MS.gene001729.t1 |
chr1.3 | exon | 64296755 | 64296949 | 64296755 | ID=MS.gene001729.t1.exon3;Parent=MS.gene001729.t1 |
chr1.3 | CDS | 64296755 | 64296949 | 64296755 | ID=cds.MS.gene001729.t1;Parent=MS.gene001729.t1 |
chr1.3 | exon | 64297764 | 64298044 | 64297764 | ID=MS.gene001729.t1.exon4;Parent=MS.gene001729.t1 |
chr1.3 | CDS | 64297764 | 64298044 | 64297764 | ID=cds.MS.gene001729.t1;Parent=MS.gene001729.t1 |
chr1.3 | exon | 64298317 | 64298496 | 64298317 | ID=MS.gene001729.t1.exon5;Parent=MS.gene001729.t1 |
chr1.3 | CDS | 64298317 | 64298496 | 64298317 | ID=cds.MS.gene001729.t1;Parent=MS.gene001729.t1 |
chr1.3 | exon | 64299380 | 64299554 | 64299380 | ID=MS.gene001729.t1.exon6;Parent=MS.gene001729.t1 |
chr1.3 | CDS | 64299380 | 64299554 | 64299380 | ID=cds.MS.gene001729.t1;Parent=MS.gene001729.t1 |
chr1.3 | exon | 64299940 | 64300110 | 64299940 | ID=MS.gene001729.t1.exon7;Parent=MS.gene001729.t1 |
chr1.3 | CDS | 64299940 | 64300110 | 64299940 | ID=cds.MS.gene001729.t1;Parent=MS.gene001729.t1 |
Gene Sequence |
Protein sequence |