AlfalfaGEDB | MS.gene002505

M. sativa cultivar XinJiangDaYe / MS.gene002505

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00560.36 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002505.t1	RHN71990.1	92.7	996	48	3	1	996	1	971	5.80E-254	887.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002505.t1	Q9SGP2	72.1	412	108	2	592	996	585	996	8.9e-179	629.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002505.t1	A0A396J2D4	92.7	996	48	3	1	996	1	971	4.2e-254	887.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002505	MS.gene014603	PPI
MS.gene40247	MS.gene002505	PPI
MS.gene40699	MS.gene002505	PPI
MS.gene43254	MS.gene002505	PPI
MS.gene69071	MS.gene002505	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene002505.t1	MTR_2g014560	98.293	996	14	2	1	996	1	993	1963
MS.gene002505.t1	MTR_4g088320	74.223	997	255	2	1	996	4	999	1491
MS.gene002505.t1	MTR_2g090710	60.410	975	368	14	19	987	21	983	1104
MS.gene002505.t1	MTR_5g014720	42.095	1012	514	18	8	965	4	997	729
MS.gene002505.t1	MTR_4g097880	41.481	986	495	15	31	978	34	975	689
MS.gene002505.t1	MTR_3g110860	40.960	979	520	14	17	968	17	964	688
MS.gene002505.t1	MTR_2g010470	41.249	977	534	12	7	973	26	972	676
MS.gene002505.t1	MTR_5g014700	41.200	983	501	17	28	973	31	973	670
MS.gene002505.t1	MTR_1g069470	39.282	975	553	19	22	971	24	984	636
MS.gene002505.t1	MTR_5g090100	40.336	952	508	16	37	966	46	959	632

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene002505.t1	AT1G28440	66.565	987	321	4	17	996	12	996	1344
MS.gene002505.t1	AT4G28490	56.998	986	399	13	19	988	19	995	1041
MS.gene002505.t1	AT5G65710	44.582	969	486	13	32	965	36	988	750
MS.gene002505.t1	AT5G65700	41.397	988	501	16	36	983	41	990	681
MS.gene002505.t1	AT5G65700	41.397	988	501	16	36	983	41	990	681
MS.gene002505.t1	AT3G49670	40.234	1024	526	19	10	994	19	995	678
MS.gene002505.t1	AT5G25930	41.182	981	540	22	15	977	17	978	659
MS.gene002505.t1	AT1G09970	39.692	975	543	13	7	968	14	956	652
MS.gene002505.t1	AT1G09970	39.652	976	543	14	7	968	14	957	647
MS.gene002505.t1	AT1G72180	39.980	1003	529	23	7	982	20	976	630

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Find 265 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGACATCAACGTCCATT+TGG	0.419714	2.1:+70541729	None:intergenic
AAAGGTTTATGTGATGTCAA+AGG	0.479640	2.1:-70541886	MS.gene002505:CDS
AAATATCTAAAGGGAGTGTT+TGG	0.402290	2.1:+70543402	None:intergenic
AAATCAAGATAACGGAGGTT+AGG	0.363351	2.1:+70543299	None:intergenic
AAATCACCAAGACTACCATT+TGG	0.525024	2.1:+70541400	None:intergenic
AACAAATTAAGACTTTCAAG+TGG	0.609246	2.1:+70542792	None:intergenic
AACTAAGCCATAGAACTTCG+AGG	0.526251	2.1:+70543075	None:intergenic
AAGACTTTGTTTGGCTCTCT+GGG	0.347390	2.1:+70540507	None:intergenic
AAGAGGAGAAAGGGAAGAAG+AGG	0.465080	2.1:+70543707	None:intergenic
AAGAGTGACACATACAGTTT+TGG	0.407737	2.1:-70540779	MS.gene002505:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTTTATGTGATGTCAA+AGG	-	chr2.1:70542266-70542285	MS.gene002505:CDS	30.0%
AAGGTTTATGTGATGTCAAA+GGG	-	chr2.1:70542267-70542286	MS.gene002505:CDS	30.0%
AATGAGGAATATTACCAACA+AGG	+	chr2.1:70541110-70541129	None:intergenic	30.0%
CTATGACATTATCTTCATCA+AGG	+	chr2.1:70542487-70542506	None:intergenic	30.0%
CTTCACAAGAATAATCTTTC+TGG	-	chr2.1:70541954-70541973	MS.gene002505:CDS	30.0%
CTTGATGAAGATAATGTCAT+AGG	-	chr2.1:70542485-70542504	MS.gene002505:CDS	30.0%
GATCCATCATCATAGTAATA+AGG	+	chr2.1:70543694-70543713	None:intergenic	30.0%
GTTTATGAGTATATGCCAAA+TGG	-	chr2.1:70542737-70542756	MS.gene002505:CDS	30.0%
TAGTTACAGTTGTGTTTGTT+GGG	+	chr2.1:70540627-70540646	None:intergenic	30.0%
TCACAAGAATAATCTTTCTG+GGG	-	chr2.1:70541956-70541975	MS.gene002505:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	70540439	70543735	70540439	ID=MS.gene002505
chr2.1	mRNA	70540439	70543735	70540439	ID=MS.gene002505.t1;Parent=MS.gene002505
chr2.1	exon	70541137	70543735	70541137	ID=MS.gene002505.t1.exon1;Parent=MS.gene002505.t1
chr2.1	CDS	70541137	70543735	70541137	ID=cds.MS.gene002505.t1;Parent=MS.gene002505.t1
chr2.1	exon	70540439	70540830	70540439	ID=MS.gene002505.t1.exon2;Parent=MS.gene002505.t1
chr2.1	CDS	70540439	70540830	70540439	ID=cds.MS.gene002505.t1;Parent=MS.gene002505.t1

Gene Sequence

>MS.gene002505

ATGCTTCCTCTTCTTCCCTTTCTCCTCTTCCTCCTCCTTCAACCACTAACCATTCTCTCTCTCAACCAAGAAGGTCTCTACCTACACCAATTCAAACTCTCCTTAGACGATCCATCCTCTTCCTTATCCACATGGAACAACAACACCTCAACACCTTGTACCTCCTGGTCAGGCATAACCTGCGACCCAACAAACACAACTGTAACTAAAATCAACCTCTCCAACTTCAACCTAGCTGGTCCATTACAAACCTCAACCCTCTGCCGTCTCACAAACTTAACCACCCTTATCCTAACTAACAACTTAATAAACCAAACACTCCCTTTAGATATTTCCACTTGCACCTCCCTTACTCATTTAGACCTCTCTAACAATCTTCTCATTGGTACACTCCCTCATACACTACCACACCTCCCTAACCTCCGTTATCTTGATTTAACAGCAAATAACTTCTCAGGCTCAATCCCAACCTCATTCGGAACATTTCCCAAACTAGAAGTGCTTTCACTTGTTTACAATCTTCTAGAATCTTCTATTCCACCTTCACTCGCAAACATTACCTCTTTGAAAACACTCAATCTGTCATTTAACCCCTTTCTACCTTCTCCGATCCCTCCGGAGATCGGAAACCTAACTAACCTCGAAGTTCTATGGCTTAGTTCATGTAACCTTGTTGGTAATATTCCTCATTCGTTTGGAAAATTGAAGAAACTCAGTGTTTTTGATCTTTCTATGAATAATCTTGATGGTTCTATTCCCAGTTCGATTGTTGAAATGACAAGTTTGAAGCAGATTGAGCTTTATAACAACTCGTTTTCCGGCGAGTTACCGGTGGGAATGTCGAATCTTACTTCATTGAGGTTGATTGATATTTCTATGAACCGTATTGGTGGCGAAATTCCTGATGAGTTGTGTAGATTACCACTTGAAAGTCTTAATTTGTTTGAGAATAGGTTTACCGGTGAATTGCCGGTGAGTATTGCTGATTCGCCGAATCTTTATGAGTTAAAGGTTTTTGAGAATTTACTCACCGGTGAGTTGCCGGAGAAGCTAGGGAAGAATGGTCCATTGATTTATTTTGATGTATCGAATAATAAGTTTTCCGGTAGGATTCCGGTGAGTTTGTGTGAGCGTGGCGCGTTGGAGGAGTTATTGATGATACATAATGAATTCTTCGGTGAGATTCCGGGGAGTTTAGGGGAGTGTCGGACATTGACGCGTGTTAGGTTGGGTTTTAATAAGTTGTCTGGGGAAGTTCCGGCAGGTTTTTGGGGTCTGCCACATGTGTATCTTCTTGAGCTTGTTGATAACTTGTTTTCTGGTTCAATTGGTAAGACTATTGGTGGAGCTGGGAATTTGTCTCAGTTGACTTTGACGAATAATAATTTCTCTGGTGTGATTCCTGAAGAGATTGGATTGTTGGAAAATCTTCAGGAATTTTCAGGTGGTAATAACCGGTTCAATTCTTCATTGCCTGAGAGTATTGTGAATCTTCATCAGCTTGGGATTCTTGATCTTCACAAGAATAATCTTTCTGGGGAGCTTCCAAAAGGGATTCAATCTCTTAAGAAACTCAATGAGTTGAATTTGGCTGGTAATGAGATTGGTGGGAAAATTCCTGAAGAAATTGGAAGTATGTCTGTGCTTAACTTTCTTGATCTTTCTAATAATCGATTTTGGGGAAATGTTCCGGTGAGTTTGCAGAACTTGAAGCTCAATCAGATGAATTTGTCATACAATATGCTTTCTGGAGAGATTCCACCTCTCATGGCTAAGGATATGTATAGGGATAGTTTTATTGGTAATCCTGGTTTATGTGGCGATTTGAAAGGTTTATGTGATGTCAAAGGGGAGGGTAAGAGTAAGAATTTTGTTTGGTTGCTTAGAACTATTTTCATAGTTGCAGCTTTAGTTTTAGTGTTTGGTGTGATTTGGTTTTACTTCAAGTACATGAATATCAAGAAAGCTAGATCTATTGATAAAACCAAATGGACGTTGATGTCGTTTCATAAACTGGGTTTTGGTGAAGATGAGGTCTTGAATTGCCTTGATGAAGATAATGTCATAGGAAGCGGATCTTCCGGGAAAGTTTATAAGGTTGTGCTTCGCAATGGGGAAGCTGTTGCTGTGAAGAAGATATGGGGTGGGGTCAGAATGGAAACCGAGAGTGGAGATGTTGAAAAGAACCGATTTCAAGACGATGCTTTTGATGCAGAGGTTGAAACTTTGGGCAAGATCAGACACAAGAACATTGTCAAGCTATGGTGTTGCTGCACCACTAGGGATTGCAAGCTATTGGTTTATGAGTATATGCCAAATGGTAGTCTTGGTGATTTGCTGCATAGCAATAAAGGAGGGTTGTTGGATTGGCCAACTAGGTATAAGATAGCTCTCGCTTCTGCAGAAGGCCTCTCTTATCTGCATCATGACTGTGTTCCTCCTATTGTTCATAGAGATGTCAAATCTAATAATATCTTGTTGGATGAAGACTTTAGCGCAAGGGTTGCAGATTTTGGGGTAGCTAAGGCGGTCGAATCCAATGGGAAAGGAACTAAGTCCATGTCTGTCATAGCTGGCTCTTGTGGGTATATCGCACCAGGTTAGCTGATTTCATGATATTCTTTCCACTTTTTGATGACTATGACGTACAATTATGTGGTACTACTTGTGATTAACTCATAATCACTGCATTTGTTGATTACTTGTATTATACTGAATAAATTAAGCTTCATATGCAATTTATTATCAAATATTTTCTTTTTTTCTTTGCAGTGGTATTATTAATACATGATTTTATTAACACCTTCTGATTGTCTTTTGAAATAATTATCAGCTTCCAAGTCTTAAGAGAGTGAGAATATATTATTTTGGAGCCAAATTGACACGCAATTGTTACCTTTTGCAGAATATGCATACACACTTAGAGTGAATGAGAAGAGTGACACATACAGTTTTGGTGTTGTTATCCTCGAGTTAGTCACCGGAAGGAAGCCTATAGATCCTGAATTTGGGGAAAAAGATTTGGTTATGTGGGCATGCAACACCTTGGATCAGAAAGGTGTTGACCATGTTCTTGACTCAAGGCTTGATTCTTTTTACAAAGAAGAAATTTGCAAGGTCCTTAACATTGGCCTAATGTGCACTAGTCCTCTTCCAATTAACCGGCCTGCAATGAGAAGAGTGGTGAAGATGTTACAAGAAGTAGGCCCAGAGAGCCAAACAAAGTCTTCCCAGAAAGATGGAAAGTTGTCCCCTTATTACTATGATGATGGATCAGATCAAGGAAGTGTTGCTTAA

Protein sequence

>MS.gene002505.t1

MLPLLPFLLFLLLQPLTILSLNQEGLYLHQFKLSLDDPSSSLSTWNNNTSTPCTSWSGITCDPTNTTVTKINLSNFNLAGPLQTSTLCRLTNLTTLILTNNLINQTLPLDISTCTSLTHLDLSNNLLIGTLPHTLPHLPNLRYLDLTANNFSGSIPTSFGTFPKLEVLSLVYNLLESSIPPSLANITSLKTLNLSFNPFLPSPIPPEIGNLTNLEVLWLSSCNLVGNIPHSFGKLKKLSVFDLSMNNLDGSIPSSIVEMTSLKQIELYNNSFSGELPVGMSNLTSLRLIDISMNRIGGEIPDELCRLPLESLNLFENRFTGELPVSIADSPNLYELKVFENLLTGELPEKLGKNGPLIYFDVSNNKFSGRIPVSLCERGALEELLMIHNEFFGEIPGSLGECRTLTRVRLGFNKLSGEVPAGFWGLPHVYLLELVDNLFSGSIGKTIGGAGNLSQLTLTNNNFSGVIPEEIGLLENLQEFSGGNNRFNSSLPESIVNLHQLGILDLHKNNLSGELPKGIQSLKKLNELNLAGNEIGGKIPEEIGSMSVLNFLDLSNNRFWGNVPVSLQNLKLNQMNLSYNMLSGEIPPLMAKDMYRDSFIGNPGLCGDLKGLCDVKGEGKSKNFVWLLRTIFIVAALVLVFGVIWFYFKYMNIKKARSIDKTKWTLMSFHKLGFGEDEVLNCLDEDNVIGSGSSGKVYKVVLRNGEAVAVKKIWGGVRMETESGDVEKNRFQDDAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSNKGGLLDWPTRYKIALASAEGLSYLHHDCVPPIVHRDVKSNNILLDEDFSARVADFGVAKAVESNGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDTYSFGVVILELVTGRKPIDPEFGEKDLVMWACNTLDQKGVDHVLDSRLDSFYKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEVGPESQTKSSQKDGKLSPYYYDDGSDQGSVA