AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002726

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002726.t1 MTR_2g019230 97.037 405 12 0 1 405 1 405 0.0 820
MS.gene002726.t1 MTR_3g108860 33.880 366 214 7 42 405 7 346 3.67e-67 217
MS.gene002726.t1 MTR_4g114110 33.566 286 175 8 44 325 73 347 3.30e-42 154
MS.gene002726.t1 MTR_8g085600 31.834 289 182 8 49 333 74 351 3.95e-38 143
MS.gene002726.t1 MTR_3g073640 27.536 345 178 12 52 330 43 381 9.75e-31 123
MS.gene002726.t1 MTR_8g030940 30.031 323 205 11 51 364 24 334 4.81e-30 119
MS.gene002726.t1 MTR_2g008440 28.205 351 171 13 52 330 43 384 1.57e-29 119
MS.gene002726.t1 MTR_8g080370 30.263 304 186 9 45 334 34 325 1.43e-28 115
MS.gene002726.t1 MTR_3g085570 27.682 289 195 7 49 334 32 309 1.27e-23 101
MS.gene002726.t1 MTR_3g094850 30.272 294 176 11 52 338 9 280 7.89e-23 99.0
MS.gene002726.t1 MTR_2g094093 26.377 345 230 9 50 386 18 346 1.18e-20 92.8
MS.gene002726.t1 MTR_8g085650 30.357 224 140 4 52 262 7 227 9.53e-19 87.0
MS.gene002726.t1 MTR_1330s0010 23.120 359 226 12 12 354 80 404 8.20e-18 85.1
MS.gene002726.t1 MTR_0345s0010 23.120 359 226 12 12 354 67 391 1.03e-17 85.1
MS.gene002726.t1 MTR_0105s0170 23.120 359 226 12 12 354 80 404 1.94e-17 84.3
MS.gene002726.t1 MTR_0105s0040 23.120 359 226 12 12 354 165 489 2.37e-17 84.3
MS.gene002726.t1 MTR_0105s0130 23.120 359 226 12 12 354 67 391 3.58e-17 83.2
MS.gene002726.t1 MTR_0105s0020 23.184 358 227 12 12 354 67 391 8.56e-17 82.0
MS.gene002726.t1 MTR_7g095220 29.954 217 135 7 52 258 4 213 2.00e-16 80.5
MS.gene002726.t1 MTR_6g023805 24.662 296 196 9 53 333 57 340 3.03e-16 80.5
MS.gene002726.t1 MTR_0496s0010 22.513 382 243 14 12 378 49 392 9.93e-16 79.0
MS.gene002726.t1 MTR_4g022260 22.312 372 237 13 12 366 49 385 6.19e-14 73.6
MS.gene002726.t1 MTR_4g108280 22.191 356 241 12 44 379 23 362 3.23e-13 70.9
MS.gene002726.t1 MTR_7g029290 23.256 301 206 9 46 333 43 331 7.15e-12 67.0
MS.gene002726.t1 MTR_7g070320 32.192 146 93 5 156 299 526 667 4.41e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002726.t1 AT1G30090 68.473 406 119 2 1 405 1 398 0.0 599
MS.gene002726.t1 AT2G24540 37.433 374 217 9 35 404 11 371 1.55e-83 260
MS.gene002726.t1 AT1G55270 32.975 279 178 7 49 326 75 345 3.01e-41 151
MS.gene002726.t1 AT1G22040 30.233 344 169 13 52 330 43 380 4.92e-34 132
MS.gene002726.t1 AT1G67480 32.069 290 186 6 42 328 29 310 1.78e-33 129
MS.gene002726.t1 AT1G67480 32.069 290 186 6 42 328 29 310 1.78e-33 129
MS.gene002726.t1 AT1G67480 32.069 290 186 6 42 328 29 310 1.78e-33 129
MS.gene002726.t1 AT1G27420 26.398 322 184 9 51 372 9 277 1.12e-25 107
MS.gene002726.t1 AT1G55270 29.464 224 150 6 104 326 3 219 7.26e-22 95.5
MS.gene002726.t1 AT5G60570 27.365 296 193 7 45 332 39 320 4.81e-21 94.4
MS.gene002726.t1 AT5G60570 27.365 296 193 7 45 332 39 320 4.81e-21 94.4
MS.gene002726.t1 AT5G60570 27.365 296 193 7 45 332 39 320 4.81e-21 94.4
MS.gene002726.t1 AT3G63220 28.472 288 173 10 52 328 4 269 7.81e-20 90.5
MS.gene002726.t1 AT3G63220 28.472 288 173 10 52 328 11 276 8.13e-20 90.5
MS.gene002726.t1 AT3G63220 28.472 288 173 10 52 328 11 276 8.13e-20 90.5
MS.gene002726.t1 AT1G16250 27.530 247 162 7 49 285 5 244 1.34e-18 87.0
MS.gene002726.t1 AT1G16250 27.530 247 162 7 49 285 5 244 1.34e-18 87.0
MS.gene002726.t1 AT3G61350 22.956 318 219 11 52 361 21 320 1.64e-18 86.7
MS.gene002726.t1 AT3G61350 22.956 318 219 11 52 361 21 320 1.64e-18 86.7
MS.gene002726.t1 AT2G21950 27.303 304 194 11 52 344 20 307 3.21e-17 83.2
MS.gene002726.t1 AT4G39580 25.874 286 184 10 56 330 26 294 1.08e-14 75.5
MS.gene002726.t1 AT3G27150 23.256 344 230 10 8 333 21 348 4.24e-14 73.9
MS.gene002726.t1 AT3G27150 23.256 344 230 10 8 333 21 348 4.24e-14 73.9
MS.gene002726.t1 AT1G26930 23.602 322 212 10 52 354 71 377 5.17e-13 70.5
MS.gene002726.t1 AT1G60570 25.342 292 189 11 49 328 17 291 1.21e-12 69.3
MS.gene002726.t1 AT1G80440 29.279 222 143 7 52 262 3 221 6.32e-11 63.9

Find 120 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCCTCACAACTTTCTTT+TGG 0.176864 2.1:+67810452 None:intergenic
ATCAGGTAAGCCCGGAATTA+AGG 0.209782 2.1:+67811405 None:intergenic
GGTTCAAGCGTGGTTGTTTA+TGG 0.236597 2.1:-67810674 MS.gene002726:CDS
TAATTGTCTTCTTCGTCTTC+CGG 0.313205 2.1:-67811371 MS.gene002726:CDS
TTGTCCTTGCAAGGCATTGC+AGG 0.324010 2.1:+67811154 None:intergenic
TGTCGTAGGCCGGAATCTTC+TGG 0.330235 2.1:-67810504 MS.gene002726:CDS
AAGAAAGTTGTGAGGGGAAA+TGG 0.336256 2.1:-67810448 MS.gene002726:CDS
TGACACTATCTCCCAAGTTT+AGG 0.343062 2.1:-67811495 MS.gene002726:CDS
AGCCATAGTTTCCCAGCTAT+TGG 0.348050 2.1:+67810721 None:intergenic
TGCCAACATGGGAACCAATA+TGG 0.351045 2.1:-67810846 MS.gene002726:CDS
CTTCCCAGGAATCGGCTTCC+TGG 0.361899 2.1:+67810600 None:intergenic
AGGCAAAGGGGAGCCATCTA+TGG 0.368132 2.1:+67810577 None:intergenic
TAGATCCGATTAGCGGGAAT+TGG 0.368843 2.1:-67810877 MS.gene002726:CDS
CCTCTAGGAGAGACATAAAA+AGG 0.369553 2.1:+67810764 None:intergenic
AGAGCTTGAAGGGGTCAAAT+TGG 0.369698 2.1:+67810379 None:intergenic
AACCAATAGCTGGGAAACTA+TGG 0.377206 2.1:-67810723 MS.gene002726:CDS
AGAGAAGAACCCTTAATTCC+GGG 0.383870 2.1:-67811415 MS.gene002726:CDS
AAGAGAAGAACCCTTAATTC+CGG 0.391873 2.1:-67811416 MS.gene002726:CDS
GTTCAGAACTGCAGCATCAT+AGG 0.399835 2.1:+67810820 None:intergenic
ATAACCAGGAAGCCGATTCC+TGG 0.405175 2.1:-67810604 MS.gene002726:CDS
GTTTCCCAGCTATTGGTTCT+CGG 0.422970 2.1:+67810728 None:intergenic
GCGCGCCAATTCCCGCTAAT+CGG 0.425020 2.1:+67810872 None:intergenic
AGCATCATAGGATGCCATAT+TGG 0.428156 2.1:+67810832 None:intergenic
TCAGGTAAGCCCGGAATTAA+GGG 0.433050 2.1:+67811406 None:intergenic
TGCATATTTGCTCAGGCAAA+GGG 0.438541 2.1:+67810564 None:intergenic
GCTCGAAAGAATGAAGCTTA+AGG 0.440805 2.1:-67810630 MS.gene002726:CDS
TCACAAGCATTCACAGCAAA+AGG 0.445454 2.1:+67810539 None:intergenic
CAACAGCAACCAGAAGATTC+CGG 0.446885 2.1:+67810495 None:intergenic
TTATGTCTCTCCTAGAGGAC+AGG 0.451993 2.1:-67810759 MS.gene002726:CDS
TTTGACCCCTTCAAGCTCTC+AGG 0.453320 2.1:-67810375 MS.gene002726:CDS
AACCACCGCTAACCTAAACT+TGG 0.453592 2.1:+67811483 None:intergenic
AAAGGTTTGCATATTTGCTC+AGG 0.456311 2.1:+67810557 None:intergenic
CGTGGATTGTCCTCTTGACT+TGG 0.459145 2.1:-67811053 MS.gene002726:CDS
TTTGCATATCATAAGTGTAC+TGG 0.463348 2.1:-67811229 MS.gene002726:CDS
AAGGACAAGGTTTGTCCTCA+TGG 0.464137 2.1:-67811139 MS.gene002726:CDS
ATGATGCTGCAGTTCTGAAC+GGG 0.464281 2.1:-67810817 MS.gene002726:CDS
AAATGGGTTTCAAAGATCCT+TGG 0.469304 2.1:-67811261 MS.gene002726:CDS
ATCTATGGCTTCCCAGGAAT+CGG 0.471739 2.1:+67810592 None:intergenic
GATTCCTGGGAAGCCATAGA+TGG 0.472750 2.1:-67810590 MS.gene002726:CDS
CCTCTTGCAGACAGCCCTAC+AGG 0.472883 2.1:+67811333 None:intergenic
GTCAAATTTATGTCGTAGGC+CGG 0.477828 2.1:-67810514 MS.gene002726:CDS
ATCTCCCAAGTTTAGGTTAG+CGG 0.477981 2.1:-67811488 MS.gene002726:CDS
TACTGGAAAGATTCAATGGC+AGG 0.482203 2.1:-67811212 MS.gene002726:CDS
TTGTAACAGAAGGATGGTTA+TGG 0.483194 2.1:-67810787 MS.gene002726:CDS
CAATTAAGAGCAACATCATC+AGG 0.483657 2.1:+67811388 None:intergenic
CGGAATCTTCTGGTTGCTGT+TGG 0.483823 2.1:-67810494 MS.gene002726:CDS
GGAGCCATCTATGGCTTCCC+AGG 0.485903 2.1:+67810586 None:intergenic
TAGTACTGATCTTTATGAGC+TGG 0.486572 2.1:-67810915 MS.gene002726:CDS
ACGATCCGAGAACCAATAGC+TGG 0.496530 2.1:-67810733 MS.gene002726:CDS
TTTACTAATAGGAAGCAAAT+GGG 0.500450 2.1:-67811277 MS.gene002726:CDS
AATAGCACCTGAGAGCTTGA+AGG 0.504117 2.1:+67810368 None:intergenic
TTGCATATTTGCTCAGGCAA+AGG 0.504929 2.1:+67810563 None:intergenic
CTTGCAAGGCATTGCAGGGA+TGG 0.507543 2.1:+67811159 None:intergenic
AGCTGGGAAACTATGGCTGT+TGG 0.507613 2.1:-67810716 MS.gene002726:CDS
GATGGGATGGTTTATGCAGC+TGG 0.507844 2.1:-67810944 MS.gene002726:CDS
CAGGATGAATGACTTTGAAC+CGG 0.508558 2.1:+67811352 None:intergenic
TGCCATATTGGTTCCCATGT+TGG 0.508940 2.1:+67810844 None:intergenic
TGCAATGCCTTGCAAGGACA+AGG 0.510866 2.1:-67811152 MS.gene002726:CDS
ATGGGATGGTTTATGCAGCT+GGG 0.512009 2.1:-67810943 MS.gene002726:CDS
AGGTATTAGATCCGATTAGC+GGG 0.521082 2.1:-67810883 MS.gene002726:CDS
TTGGGAGATAGTGTCATTTG+AGG 0.521340 2.1:+67811502 None:intergenic
AATGGAACTTCAGTGTTCAA+TGG 0.527552 2.1:-67810430 MS.gene002726:CDS
AGTGTACTGGAAAGATTCAA+TGG 0.529957 2.1:-67811216 MS.gene002726:CDS
ATAGCACCTGAGAGCTTGAA+GGG 0.534517 2.1:+67810369 None:intergenic
GCTCAGAAACAACAAATAAG+TGG 0.537113 2.1:+67810651 None:intergenic
TAACCAGGAAGCCGATTCCT+GGG 0.538113 2.1:-67810603 MS.gene002726:CDS
CTTAGAGAATGATCTAACTC+TGG 0.539641 2.1:+67811436 None:intergenic
TTTGCCAGTGGAGTAATCGA+TGG 0.542803 2.1:-67810962 MS.gene002726:CDS
CAAGCACCGGTTCACAAGCT+AGG 0.543317 2.1:-67811529 MS.gene002726:CDS
TTGCCAGTGGAGTAATCGAT+GGG 0.543911 2.1:-67810961 MS.gene002726:CDS
AAGAGGTGGCATATGTTACT+TGG 0.546808 2.1:-67811316 MS.gene002726:CDS
GGACTTAGAGAAGGGTGGAC+TGG 0.550423 2.1:-67810695 MS.gene002726:CDS
TTGGCGCGCTATTGCCAACA+TGG 0.550527 2.1:-67810858 MS.gene002726:CDS
GGATCACCTAGCTTGTGAAC+CGG 0.553072 2.1:+67811523 None:intergenic
GCAACATCATCAGGTAAGCC+CGG 0.556029 2.1:+67811397 None:intergenic
TCAAAGTCATTCATCCTGTA+GGG 0.557607 2.1:-67811347 MS.gene002726:CDS
GGATCGTAGACCTGTCCTCT+AGG 0.560032 2.1:+67810749 None:intergenic
CATCCCTGCAATGCCTTGCA+AGG 0.560526 2.1:-67811158 MS.gene002726:CDS
GATTGTCAAATTTATGTCGT+AGG 0.561359 2.1:-67810518 MS.gene002726:CDS
GAATGATCTAACTCTGGCAT+CGG 0.561877 2.1:+67811442 None:intergenic
CATCCCATCGATTACTCCAC+TGG 0.564791 2.1:+67810958 None:intergenic
TGTCCTTGCAAGGCATTGCA+GGG 0.566024 2.1:+67811155 None:intergenic
TCTTTACGTATGCGGTGGCA+TGG 0.567533 2.1:-67811083 MS.gene002726:CDS
AACCCAAAAGAAAGTTGTGA+GGG 0.567884 2.1:-67810455 MS.gene002726:CDS
TTCAAAGTCATTCATCCTGT+AGG 0.569327 2.1:-67811348 MS.gene002726:CDS
TATGATGCTGCAGTTCTGAA+CGG 0.569619 2.1:-67810818 MS.gene002726:CDS
GTAGGGCTGTCTGCAAGAGG+TGG 0.571680 2.1:-67811330 MS.gene002726:CDS
ATGGCTGTTGGACTTAGAGA+AGG 0.574595 2.1:-67810704 MS.gene002726:CDS
CCTGTAGGGCTGTCTGCAAG+AGG 0.578172 2.1:-67811333 MS.gene002726:CDS
CAGTGGAGTAATCGATGGGA+TGG 0.581579 2.1:-67810957 MS.gene002726:CDS
TGTTACTTGGTAGTAAAGAG+AGG 0.594306 2.1:-67811303 MS.gene002726:CDS
GGACAAACCTTGTCCTTGCA+AGG 0.597418 2.1:+67811145 None:intergenic
TGGGATGGTTTATGCAGCTG+GGG 0.601401 2.1:-67810942 MS.gene002726:CDS
GAAGCTTAAGGTTTATAACC+AGG 0.604476 2.1:-67810618 MS.gene002726:CDS
TCCCAAGTTTAGGTTAGCGG+TGG 0.605858 2.1:-67811485 MS.gene002726:CDS
TTATGAGCTGGATTCAGCTG+AGG 0.606127 2.1:-67810903 MS.gene002726:CDS
TATTTCAACACCAAGTCAAG+AGG 0.607388 2.1:+67811043 None:intergenic
CGGTGGCATGGTCTCTGACG+TGG 0.609464 2.1:-67811071 MS.gene002726:CDS
GAGGTATTAGATCCGATTAG+CGG 0.618113 2.1:-67810884 MS.gene002726:CDS
GGGAAACTGCTTGTAACAGA+AGG 0.619168 2.1:-67810797 MS.gene002726:CDS
CGATCCGAGAACCAATAGCT+GGG 0.621734 2.1:-67810732 MS.gene002726:CDS
TGGCTGTTGGACTTAGAGAA+GGG 0.623432 2.1:-67810703 MS.gene002726:CDS
AACTGCTTGTAACAGAAGGA+TGG 0.627353 2.1:-67810793 MS.gene002726:CDS
TGGCGCGCTATTGCCAACAT+GGG 0.632332 2.1:-67810857 MS.gene002726:CDS
TGAATCGAATGATCAGTGCT+AGG 0.644133 2.1:-67810991 MS.gene002726:CDS
CTGTTGGACTTAGAGAAGGG+TGG 0.655252 2.1:-67810700 MS.gene002726:CDS
GGTAATCTTTACGTATGCGG+TGG 0.656082 2.1:-67811088 MS.gene002726:CDS
TGTGTTTCGATGCCTCACGA+TGG 0.656289 2.1:-67811109 MS.gene002726:CDS
ACCACCGCTAACCTAAACTT+GGG 0.656767 2.1:+67811484 None:intergenic
GCATATTTGCTCAGGCAAAG+GGG 0.660049 2.1:+67810565 None:intergenic
ACGTAAAGATTACCATCGTG+AGG 0.668276 2.1:+67811097 None:intergenic
AGGGTGGACTGGTTCAAGCG+TGG 0.672213 2.1:-67810684 MS.gene002726:CDS
GGGATGGTTTATGCAGCTGG+GGG 0.673599 2.1:-67810941 MS.gene002726:CDS
GAACCCAAAAGAAAGTTGTG+AGG 0.676488 2.1:-67810456 MS.gene002726:CDS
ACTGATCATTCGATTCATCA+CGG 0.677591 2.1:+67810997 None:intergenic
GGATGGTTTATGCAGCTGGG+GGG 0.678556 2.1:-67810940 MS.gene002726:CDS
ACCCAAAAGAAAGTTGTGAG+GGG 0.696628 2.1:-67810454 MS.gene002726:CDS
TAGCACCTGAGAGCTTGAAG+GGG 0.706757 2.1:+67810370 None:intergenic
GATGGTAATCTTTACGTATG+CGG 0.716864 2.1:-67811091 MS.gene002726:CDS
GAAACACACCGAAAACCATG+AGG 0.732405 2.1:+67811124 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTTACTAATAGGAAGCAAAT+GGG - chr2.1:67810640-67810659 MS.gene002726:CDS 25.0%
!! GTCAAATTGGATAAACTTTT+AGG + chr2.1:67811528-67811547 None:intergenic 25.0%
!! TTTTACTAATAGGAAGCAAA+TGG - chr2.1:67810639-67810658 MS.gene002726:CDS 25.0%
!!! AAGAGAGGTTTTTTACTAAT+AGG - chr2.1:67810629-67810648 MS.gene002726:CDS 25.0%
GATTGTCAAATTTATGTCGT+AGG - chr2.1:67811399-67811418 MS.gene002726:CDS 30.0%
TATGCAAATACAAAAAGCCA+AGG + chr2.1:67810676-67810695 None:intergenic 30.0%
TTTGCATATCATAAGTGTAC+TGG - chr2.1:67810688-67810707 MS.gene002726:CDS 30.0%
!! TTGATCTAACTCACTTTTCT+TGG - chr2.1:67810731-67810750 MS.gene002726:CDS 30.0%
AAAGGTTTGCATATTTGCTC+AGG + chr2.1:67811363-67811382 None:intergenic 35.0%
AACCCAAAAGAAAGTTGTGA+GGG - chr2.1:67811462-67811481 MS.gene002726:CDS 35.0%
AAGAGAAGAACCCTTAATTC+CGG - chr2.1:67810501-67810520 MS.gene002726:CDS 35.0%
AATGGAACTTCAGTGTTCAA+TGG - chr2.1:67811487-67811506 MS.gene002726:CDS 35.0%
ACTGATCATTCGATTCATCA+CGG + chr2.1:67810923-67810942 None:intergenic 35.0%
AGTGTACTGGAAAGATTCAA+TGG - chr2.1:67810701-67810720 MS.gene002726:CDS 35.0%
ATGAGATCACGAAAAATCGT+TGG - chr2.1:67810896-67810915 MS.gene002726:CDS 35.0%
CAATTAAGAGCAACATCATC+AGG + chr2.1:67810532-67810551 None:intergenic 35.0%
CTTAGAGAATGATCTAACTC+TGG + chr2.1:67810484-67810503 None:intergenic 35.0%
GAAGCTTAAGGTTTATAACC+AGG - chr2.1:67811299-67811318 MS.gene002726:CDS 35.0%
GATGGTAATCTTTACGTATG+CGG - chr2.1:67810826-67810845 MS.gene002726:CDS 35.0%
GCTCAGAAACAACAAATAAG+TGG + chr2.1:67811269-67811288 None:intergenic 35.0%
TAATTGTCTTCTTCGTCTTC+CGG - chr2.1:67810546-67810565 MS.gene002726:CDS 35.0%
TATTTCAACACCAAGTCAAG+AGG + chr2.1:67810877-67810896 None:intergenic 35.0%
TCAAAGTCATTCATCCTGTA+GGG - chr2.1:67810570-67810589 MS.gene002726:CDS 35.0%
TTCAAAGTCATTCATCCTGT+AGG - chr2.1:67810569-67810588 MS.gene002726:CDS 35.0%
TTGTAACAGAAGGATGGTTA+TGG - chr2.1:67811130-67811149 MS.gene002726:CDS 35.0%
! AAATGGGTTTCAAAGATCCT+TGG - chr2.1:67810656-67810675 MS.gene002726:CDS 35.0%
! TGTTACTTGGTAGTAAAGAG+AGG - chr2.1:67810614-67810633 MS.gene002726:CDS 35.0%
!! TAGTACTGATCTTTATGAGC+TGG - chr2.1:67811002-67811021 MS.gene002726:CDS 35.0%
!!! ACTTTCTTTTGGGTTCAGTA+TGG + chr2.1:67811457-67811476 None:intergenic 35.0%
AACCAATAGCTGGGAAACTA+TGG - chr2.1:67811194-67811213 MS.gene002726:CDS 40.0%
AACTGCTTGTAACAGAAGGA+TGG - chr2.1:67811124-67811143 MS.gene002726:CDS 40.0%
AAGAAAGTTGTGAGGGGAAA+TGG - chr2.1:67811469-67811488 MS.gene002726:CDS 40.0%
AAGAGGTGGCATATGTTACT+TGG - chr2.1:67810601-67810620 MS.gene002726:CDS 40.0%
ACCCAAAAGAAAGTTGTGAG+GGG - chr2.1:67811463-67811482 MS.gene002726:CDS 40.0%
ACGTAAAGATTACCATCGTG+AGG + chr2.1:67810823-67810842 None:intergenic 40.0%
AGAGAAGAACCCTTAATTCC+GGG - chr2.1:67810502-67810521 MS.gene002726:CDS 40.0%
AGCATCATAGGATGCCATAT+TGG + chr2.1:67811088-67811107 None:intergenic 40.0%
AGGTATTAGATCCGATTAGC+GGG - chr2.1:67811034-67811053 MS.gene002726:CDS 40.0%
CAGGATGAATGACTTTGAAC+CGG + chr2.1:67810568-67810587 None:intergenic 40.0%
GAACCCAAAAGAAAGTTGTG+AGG - chr2.1:67811461-67811480 MS.gene002726:CDS 40.0%
GAATGATCTAACTCTGGCAT+CGG + chr2.1:67810478-67810497 None:intergenic 40.0%
GCTCGAAAGAATGAAGCTTA+AGG - chr2.1:67811287-67811306 MS.gene002726:CDS 40.0%
GTCAAATTTATGTCGTAGGC+CGG - chr2.1:67811403-67811422 MS.gene002726:CDS 40.0%
TACTGGAAAGATTCAATGGC+AGG - chr2.1:67810705-67810724 MS.gene002726:CDS 40.0%
TCACAAGCATTCACAGCAAA+AGG + chr2.1:67811381-67811400 None:intergenic 40.0%
TGAATCGAATGATCAGTGCT+AGG - chr2.1:67810926-67810945 MS.gene002726:CDS 40.0%
TGACACTATCTCCCAAGTTT+AGG - chr2.1:67810422-67810441 MS.gene002726:CDS 40.0%
TGCATATTTGCTCAGGCAAA+GGG + chr2.1:67811356-67811375 None:intergenic 40.0%
TTGCATATTTGCTCAGGCAA+AGG + chr2.1:67811357-67811376 None:intergenic 40.0%
! AGGTTTGTCCTCATGGTTTT+CGG - chr2.1:67810785-67810804 MS.gene002726:CDS 40.0%
! ATCTCCCAAGTTTAGGTTAG+CGG - chr2.1:67810429-67810448 MS.gene002726:CDS 40.0%
! ATTTTCGTCTCAACAAGCAC+CGG - chr2.1:67810375-67810394 MS.gene002726:CDS 40.0%
! CCTCTAGGAGAGACATAAAA+AGG + chr2.1:67811156-67811175 None:intergenic 40.0%
! CCTTTTTATGTCTCTCCTAG+AGG - chr2.1:67811153-67811172 MS.gene002726:CDS 40.0%
! GAGGTATTAGATCCGATTAG+CGG - chr2.1:67811033-67811052 MS.gene002726:CDS 40.0%
! TCCCCTCACAACTTTCTTTT+GGG + chr2.1:67811467-67811486 None:intergenic 40.0%
! TTCCCCTCACAACTTTCTTT+TGG + chr2.1:67811468-67811487 None:intergenic 40.0%
!! TATGATGCTGCAGTTCTGAA+CGG - chr2.1:67811099-67811118 MS.gene002726:CDS 40.0%
!! TTGGGAGATAGTGTCATTTG+AGG + chr2.1:67810418-67810437 None:intergenic 40.0%
AACCACCGCTAACCTAAACT+TGG + chr2.1:67810437-67810456 None:intergenic 45.0%
AAGGACAAGGTTTGTCCTCA+TGG - chr2.1:67810778-67810797 MS.gene002726:CDS 45.0%
AATAGCACCTGAGAGCTTGA+AGG + chr2.1:67811552-67811571 None:intergenic 45.0%
ACCACCGCTAACCTAAACTT+GGG + chr2.1:67810436-67810455 None:intergenic 45.0%
AGAGCTTGAAGGGGTCAAAT+TGG + chr2.1:67811541-67811560 None:intergenic 45.0%
AGCCATAGTTTCCCAGCTAT+TGG + chr2.1:67811199-67811218 None:intergenic 45.0%
ATAGCACCTGAGAGCTTGAA+GGG + chr2.1:67811551-67811570 None:intergenic 45.0%
ATCAGGTAAGCCCGGAATTA+AGG + chr2.1:67810515-67810534 None:intergenic 45.0%
ATCTATGGCTTCCCAGGAAT+CGG + chr2.1:67811328-67811347 None:intergenic 45.0%
ATGGCTGTTGGACTTAGAGA+AGG - chr2.1:67811213-67811232 MS.gene002726:CDS 45.0%
ATGGGATGGTTTATGCAGCT+GGG - chr2.1:67810974-67810993 MS.gene002726:CDS 45.0%
CAACAGCAACCAGAAGATTC+CGG + chr2.1:67811425-67811444 None:intergenic 45.0%
GAAACACACCGAAAACCATG+AGG + chr2.1:67810796-67810815 None:intergenic 45.0%
GCATATTTGCTCAGGCAAAG+GGG + chr2.1:67811355-67811374 None:intergenic 45.0%
GGGAAACTGCTTGTAACAGA+AGG - chr2.1:67811120-67811139 MS.gene002726:CDS 45.0%
GGTAATCTTTACGTATGCGG+TGG - chr2.1:67810829-67810848 MS.gene002726:CDS 45.0%
GGTTCAAGCGTGGTTGTTTA+TGG - chr2.1:67811243-67811262 MS.gene002726:CDS 45.0%
GTTCAGAACTGCAGCATCAT+AGG + chr2.1:67811100-67811119 None:intergenic 45.0%
TAGATCCGATTAGCGGGAAT+TGG - chr2.1:67811040-67811059 MS.gene002726:CDS 45.0%
TCAGGTAAGCCCGGAATTAA+GGG + chr2.1:67810514-67810533 None:intergenic 45.0%
TGCCAACATGGGAACCAATA+TGG - chr2.1:67811071-67811090 MS.gene002726:CDS 45.0%
TGGCTGTTGGACTTAGAGAA+GGG - chr2.1:67811214-67811233 MS.gene002726:CDS 45.0%
TTATGAGCTGGATTCAGCTG+AGG - chr2.1:67811014-67811033 MS.gene002726:CDS 45.0%
TTATGTCTCTCCTAGAGGAC+AGG - chr2.1:67811158-67811177 MS.gene002726:CDS 45.0%
TTGCCAGTGGAGTAATCGAT+GGG - chr2.1:67810956-67810975 MS.gene002726:CDS 45.0%
TTTGCCAGTGGAGTAATCGA+TGG - chr2.1:67810955-67810974 MS.gene002726:CDS 45.0%
!! ATGATGCTGCAGTTCTGAAC+GGG - chr2.1:67811100-67811119 MS.gene002726:CDS 45.0%
!! GTTTCCCAGCTATTGGTTCT+CGG + chr2.1:67811192-67811211 None:intergenic 45.0%
!! TGCCATATTGGTTCCCATGT+TGG + chr2.1:67811076-67811095 None:intergenic 45.0%
!!! GCTAGGTCATTTTTTGCCAG+TGG - chr2.1:67810943-67810962 MS.gene002726:CDS 45.0%
ACGATCCGAGAACCAATAGC+TGG - chr2.1:67811184-67811203 MS.gene002726:CDS 50.0%
AGCTGGGAAACTATGGCTGT+TGG - chr2.1:67811201-67811220 MS.gene002726:CDS 50.0%
CAGTGGAGTAATCGATGGGA+TGG - chr2.1:67810960-67810979 MS.gene002726:CDS 50.0%
CGATCCGAGAACCAATAGCT+GGG - chr2.1:67811185-67811204 MS.gene002726:CDS 50.0%
CTGTTGGACTTAGAGAAGGG+TGG - chr2.1:67811217-67811236 MS.gene002726:CDS 50.0%
GATGGGATGGTTTATGCAGC+TGG - chr2.1:67810973-67810992 MS.gene002726:CDS 50.0%
GATTCCTGGGAAGCCATAGA+TGG - chr2.1:67811327-67811346 MS.gene002726:CDS 50.0%
GCAACATCATCAGGTAAGCC+CGG + chr2.1:67810523-67810542 None:intergenic 50.0%
GGACAAACCTTGTCCTTGCA+AGG + chr2.1:67810775-67810794 None:intergenic 50.0%
TAGCACCTGAGAGCTTGAAG+GGG + chr2.1:67811550-67811569 None:intergenic 50.0%
TCTTTACGTATGCGGTGGCA+TGG - chr2.1:67810834-67810853 MS.gene002726:CDS 50.0%
TGCAATGCCTTGCAAGGACA+AGG - chr2.1:67810765-67810784 MS.gene002726:CDS 50.0%
TGGGATGGTTTATGCAGCTG+GGG - chr2.1:67810975-67810994 MS.gene002726:CDS 50.0%
TGTGTTTCGATGCCTCACGA+TGG - chr2.1:67810808-67810827 MS.gene002726:CDS 50.0%
TTTGACCCCTTCAAGCTCTC+AGG - chr2.1:67811542-67811561 MS.gene002726:CDS 50.0%
! ATAACCAGGAAGCCGATTCC+TGG - chr2.1:67811313-67811332 MS.gene002726:CDS 50.0%
! CATCCCATCGATTACTCCAC+TGG + chr2.1:67810962-67810981 None:intergenic 50.0%
! CGGAATCTTCTGGTTGCTGT+TGG - chr2.1:67811423-67811442 MS.gene002726:CDS 50.0%
! CGTGGATTGTCCTCTTGACT+TGG - chr2.1:67810864-67810883 MS.gene002726:CDS 50.0%
! GGATCACCTAGCTTGTGAAC+CGG + chr2.1:67810397-67810416 None:intergenic 50.0%
! TAACCAGGAAGCCGATTCCT+GGG - chr2.1:67811314-67811333 MS.gene002726:CDS 50.0%
! TCCCAAGTTTAGGTTAGCGG+TGG - chr2.1:67810432-67810451 MS.gene002726:CDS 50.0%
!! TGTCCTTGCAAGGCATTGCA+GGG + chr2.1:67810765-67810784 None:intergenic 50.0%
!! TTGTCCTTGCAAGGCATTGC+AGG + chr2.1:67810766-67810785 None:intergenic 50.0%
AGGCAAAGGGGAGCCATCTA+TGG + chr2.1:67811343-67811362 None:intergenic 55.0%
CATCCCTGCAATGCCTTGCA+AGG - chr2.1:67810759-67810778 MS.gene002726:CDS 55.0%
GGACTTAGAGAAGGGTGGAC+TGG - chr2.1:67811222-67811241 MS.gene002726:CDS 55.0%
GGATCGTAGACCTGTCCTCT+AGG + chr2.1:67811171-67811190 None:intergenic 55.0%
GGATGGTTTATGCAGCTGGG+GGG - chr2.1:67810977-67810996 MS.gene002726:CDS 55.0%
GGGATGGTTTATGCAGCTGG+GGG - chr2.1:67810976-67810995 MS.gene002726:CDS 55.0%
TGGCGCGCTATTGCCAACAT+GGG - chr2.1:67811060-67811079 MS.gene002726:CDS 55.0%
TGTCGTAGGCCGGAATCTTC+TGG - chr2.1:67811413-67811432 MS.gene002726:CDS 55.0%
TTGGCGCGCTATTGCCAACA+TGG - chr2.1:67811059-67811078 MS.gene002726:CDS 55.0%
!! CAAGCACCGGTTCACAAGCT+AGG - chr2.1:67810388-67810407 MS.gene002726:CDS 55.0%
!! CTTGCAAGGCATTGCAGGGA+TGG + chr2.1:67810761-67810780 None:intergenic 55.0%
CCTCTTGCAGACAGCCCTAC+AGG + chr2.1:67810587-67810606 None:intergenic 60.0%
CCTGTAGGGCTGTCTGCAAG+AGG - chr2.1:67810584-67810603 MS.gene002726:CDS 60.0%
GCGCGCCAATTCCCGCTAAT+CGG + chr2.1:67811048-67811067 None:intergenic 60.0%
GGAGCCATCTATGGCTTCCC+AGG + chr2.1:67811334-67811353 None:intergenic 60.0%
GTAGGGCTGTCTGCAAGAGG+TGG - chr2.1:67810587-67810606 MS.gene002726:CDS 60.0%
! CTTCCCAGGAATCGGCTTCC+TGG + chr2.1:67811320-67811339 None:intergenic 60.0%
!! AGGGTGGACTGGTTCAAGCG+TGG - chr2.1:67811233-67811252 MS.gene002726:CDS 60.0%
CGGTGGCATGGTCTCTGACG+TGG - chr2.1:67810846-67810865 MS.gene002726:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 67810361 67811578 67810361 ID=MS.gene002726
chr2.1 mRNA 67810361 67811578 67810361 ID=MS.gene002726.t1;Parent=MS.gene002726
chr2.1 exon 67810361 67811578 67810361 ID=MS.gene002726.t1.exon1;Parent=MS.gene002726.t1
chr2.1 CDS 67810361 67811578 67810361 ID=cds.MS.gene002726.t1;Parent=MS.gene002726.t1
Gene Sequence

>MS.gene002726

ATGCAGCGTGTTAGATTTTCGTCTCAACAAGCACCGGTTCACAAGCTAGGTGATCCTCAAATGACACTATCTCCCAAGTTTAGGTTAGCGGTGGTTCAATCTAACTTGATGAGTCCGATGCCAGAGTTAGATCATTCTCTAAGAGAAGAACCCTTAATTCCGGGCTTACCTGATGATGTTGCTCTTAATTGTCTTCTTCGTCTTCCGGTTCAAAGTCATTCATCCTGTAGGGCTGTCTGCAAGAGGTGGCATATGTTACTTGGTAGTAAAGAGAGGTTTTTTACTAATAGGAAGCAAATGGGTTTCAAAGATCCTTGGCTTTTTGTATTTGCATATCATAAGTGTACTGGAAAGATTCAATGGCAGGTTTTTGATCTAACTCACTTTTCTTGGCACACCATCCCTGCAATGCCTTGCAAGGACAAGGTTTGTCCTCATGGTTTTCGGTGTGTTTCGATGCCTCACGATGGTAATCTTTACGTATGCGGTGGCATGGTCTCTGACGTGGATTGTCCTCTTGACTTGGTGTTGAAATATGAGATCACGAAAAATCGTTGGACCGTGATGAATCGAATGATCAGTGCTAGGTCATTTTTTGCCAGTGGAGTAATCGATGGGATGGTTTATGCAGCTGGGGGGAATAGTACTGATCTTTATGAGCTGGATTCAGCTGAGGTATTAGATCCGATTAGCGGGAATTGGCGCGCTATTGCCAACATGGGAACCAATATGGCATCCTATGATGCTGCAGTTCTGAACGGGAAACTGCTTGTAACAGAAGGATGGTTATGGCCTTTTTATGTCTCTCCTAGAGGACAGGTCTACGATCCGAGAACCAATAGCTGGGAAACTATGGCTGTTGGACTTAGAGAAGGGTGGACTGGTTCAAGCGTGGTTGTTTATGGCCACTTATTTGTTGTTTCTGAGCTCGAAAGAATGAAGCTTAAGGTTTATAACCAGGAAGCCGATTCCTGGGAAGCCATAGATGGCTCCCCTTTGCCTGAGCAAATATGCAAACCTTTTGCTGTGAATGCTTGTGATTGTCAAATTTATGTCGTAGGCCGGAATCTTCTGGTTGCTGTTGGTCATATCTCCATACTGAACCCAAAAGAAAGTTGTGAGGGGAAATGGAACTTCAGTGTTCAATGGCAAGTAATTGACGCGCCTAAAAGTTTATCCAATTTGACCCCTTCAAGCTCTCAGGTGCTATTTGCATAG
Protein sequence

>MS.gene002726.t1

MQRVRFSSQQAPVHKLGDPQMTLSPKFRLAVVQSNLMSPMPELDHSLREEPLIPGLPDDVALNCLLRLPVQSHSSCRAVCKRWHMLLGSKERFFTNRKQMGFKDPWLFVFAYHKCTGKIQWQVFDLTHFSWHTIPAMPCKDKVCPHGFRCVSMPHDGNLYVCGGMVSDVDCPLDLVLKYEITKNRWTVMNRMISARSFFASGVIDGMVYAAGGNSTDLYELDSAEVLDPISGNWRAIANMGTNMASYDAAVLNGKLLVTEGWLWPFYVSPRGQVYDPRTNSWETMAVGLREGWTGSSVVVYGHLFVVSELERMKLKVYNQEADSWEAIDGSPLPEQICKPFAVNACDCQIYVVGRNLLVAVGHISILNPKESCEGKWNFSVQWQVIDAPKSLSNLTPSSSQVLFA