AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003041

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003041.t1 MTR_2g025480 99.057 106 1 0 1 106 1 106 7.24e-76 219
MS.gene003041.t1 MTR_2g025470 69.811 106 32 0 1 106 1 106 5.71e-55 166
MS.gene003041.t1 MTR_2g025470 72.340 94 26 0 1 94 1 94 8.20e-50 153
MS.gene003041.t1 MTR_2g025470 73.913 69 18 0 1 69 1 69 2.08e-35 116
MS.gene003041.t1 MTR_1g112340 36.634 101 64 0 6 106 4 104 1.70e-18 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003041.t1 AT4G22310 86.000 100 14 0 1 100 1 100 1.76e-64 190
MS.gene003041.t1 AT4G14695 78.704 108 21 1 1 106 1 108 1.01e-60 181
MS.gene003041.t1 AT4G14695 78.704 108 21 1 1 106 1 108 1.01e-60 181
MS.gene003041.t1 AT4G05590 80.000 100 20 0 1 100 1 100 5.79e-60 179
MS.gene003041.t1 AT4G05590 57.971 138 20 1 1 100 1 138 8.64e-53 162
MS.gene003041.t1 AT4G05590 88.406 69 8 0 1 69 1 69 1.21e-42 134
MS.gene003041.t1 AT4G14695 62.037 108 21 2 1 106 1 90 2.36e-41 131
MS.gene003041.t1 AT5G20090 41.121 107 62 1 1 106 1 107 1.88e-22 84.7
MS.gene003041.t1 AT5G20090 41.121 107 62 1 1 106 1 107 1.88e-22 84.7
MS.gene003041.t1 AT5G20090 41.121 107 62 1 1 106 1 107 1.88e-22 84.7
MS.gene003041.t1 AT5G20090 41.489 94 55 0 1 94 1 94 6.29e-21 80.1

Find 21 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAGTAACTCACTGGTTT+TGG 0.211024 2.2:+61309724 None:intergenic
CTTCAAAGCTTCAAGCATTC+TGG 0.222791 2.2:-61309763 MS.gene003041:CDS
CTTTCCTATCCTCAACAAAT+AGG 0.357519 2.2:-61308199 MS.gene003041:intron
TTGCAACGTTCACAGCAAAA+AGG 0.357937 2.2:+61307184 None:intergenic
TGAGGATAGGAAAGCTTCTC+TGG 0.382144 2.2:+61308208 None:intergenic
ATTTGCGTGACAGTTGGTAT+AGG 0.405723 2.2:+61307148 None:intergenic
GACACAGCTGTTACAGCTAC+TGG 0.418439 2.2:-61307966 MS.gene003041:intron
TTACAGCTACTGGACTTATC+TGG 0.420347 2.2:-61307956 MS.gene003041:CDS
AACGTTGCAATGGCAGGAAC+TGG 0.478710 2.2:-61307171 MS.gene003041:CDS
CTGATACCCCACTTAAATGT+AGG 0.491087 2.2:+61308262 None:intergenic
TTTGGGCACCTACATTTAAG+TGG 0.501597 2.2:-61308270 MS.gene003041:CDS
CATACCTATTTGTTGAGGAT+AGG 0.535886 2.2:+61308195 None:intergenic
TTGGGCACCTACATTTAAGT+GGG 0.548150 2.2:-61308269 MS.gene003041:CDS
GCTGTGAACGTTGCAATGGC+AGG 0.549298 2.2:-61307177 MS.gene003041:CDS
ACCGCAATTTGCGTGACAGT+TGG 0.577855 2.2:+61307142 None:intergenic
GCATTCTGGAATCATCCAGC+TGG 0.579572 2.2:-61309749 MS.gene003041:CDS
ACCAACTGTCACGCAAATTG+CGG 0.595594 2.2:-61307143 MS.gene003041:intron
ATGCGCATACCTATTTGTTG+AGG 0.604492 2.2:+61308190 None:intergenic
GCAAGATTATTCGTCAGAGA+AGG 0.608255 2.2:-61306718 MS.gene003041:CDS
GGATAGGAAAGCTTCTCTGG+TGG 0.644326 2.2:+61308211 None:intergenic
TGGGCACCTACATTTAAGTG+GGG 0.659300 2.2:-61308268 MS.gene003041:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGTCAAATTAAGTTAAT+CGG + chr2.2:61306928-61306947 None:intergenic 15.0%
!! AAATCATATATACAAAGTTA+TGG - chr2.2:61307270-61307289 MS.gene003041:intron 15.0%
!!! TAACTTTGTATATATGATTT+TGG - chr2.2:61307671-61307690 MS.gene003041:intron 15.0%
!!! TAACTTTGTATATATGATTT+TGG + chr2.2:61307690-61307671 None:intergenic 15.0%
!! AAGGATTTAATTGATAAAAG+TGG + chr2.2:61307761-61307780 None:intergenic 20.0%
!! AAGGTTAAACTACAAAATAA+AGG + chr2.2:61309628-61309647 None:intergenic 20.0%
!! ACTTATTATTATCAAAGATC+TGG - chr2.2:61307059-61307078 MS.gene003041:intron 20.0%
!! AGTATATATTCTCATGTATT+GGG - chr2.2:61308442-61308461 MS.gene003041:intron 20.0%
!! ATATTTCATGAACAAGTTAA+AGG + chr2.2:61308600-61308619 None:intergenic 20.0%
!! ATGAAATATAGAAATACTAG+TGG - chr2.2:61308611-61308630 MS.gene003041:intron 20.0%
!! CCAAATTCAATAGAAATATT+AGG + chr2.2:61307846-61307865 None:intergenic 20.0%
!! GATAAAAGTGGTTAAATATA+GGG + chr2.2:61307749-61307768 None:intergenic 20.0%
!! GTTAAGATTACATATAAGTA+AGG + chr2.2:61309715-61309734 None:intergenic 20.0%
!! TAGTATATATTCTCATGTAT+TGG - chr2.2:61308441-61308460 MS.gene003041:intron 20.0%
!! TGATAAAAGTGGTTAAATAT+AGG + chr2.2:61307750-61307769 None:intergenic 20.0%
!! TTCATAAATAAAAACACGAA+TGG + chr2.2:61306792-61306811 None:intergenic 20.0%
!! TTGATTGCTTTGTAAAAATT+GGG - chr2.2:61306946-61306965 MS.gene003041:intron 20.0%
!! TTTGATTGCTTTGTAAAAAT+TGG - chr2.2:61306945-61306964 MS.gene003041:intron 20.0%
!!! AAGTTTTGTTGTTTTTTCAA+AGG - chr2.2:61308567-61308586 MS.gene003041:intron 20.0%
!!! AGAAATACACATTTTCAAAA+GGG + chr2.2:61308346-61308365 None:intergenic 20.0%
!!! ATCTAGTTTATTTTCTTTAG+TGG - chr2.2:61309505-61309524 MS.gene003041:intron 20.0%
!!! CCTAATATTTCTATTGAATT+TGG - chr2.2:61307843-61307862 MS.gene003041:intron 20.0%
!!! GTTTTAAGGTTTTTATTTCT+TGG + chr2.2:61308979-61308998 None:intergenic 20.0%
!!! TAAAAATTGGGTCATTTTTA+GGG - chr2.2:61306958-61306977 MS.gene003041:intron 20.0%
!!! TCTAGTTTATTTTCTTTAGT+GGG - chr2.2:61309506-61309525 MS.gene003041:intron 20.0%
! AAAGTAGAGGACTAATTTAT+TGG + chr2.2:61307170-61307189 None:intergenic 25.0%
! ACAATTAACTAAATGAACTC+TGG - chr2.2:61309086-61309105 MS.gene003041:intron 25.0%
! ATTCCATAATTCATTCACTT+GGG + chr2.2:61308394-61308413 None:intergenic 25.0%
! CAAATCCAATAACTGTTATA+CGG + chr2.2:61306844-61306863 None:intergenic 25.0%
! GAAAAAACAACAAAACTTAC+TGG + chr2.2:61308565-61308584 None:intergenic 25.0%
! GGAATTATAAACGAAATTGT+TGG - chr2.2:61307080-61307099 MS.gene003041:intron 25.0%
! TAACTAAGCAACAAAAAAAC+AGG + chr2.2:61308853-61308872 None:intergenic 25.0%
! TTACTATGTTGCAGAAAAAT+TGG - chr2.2:61309262-61309281 MS.gene003041:intron 25.0%
! TTGAATCATAATGTAGCAAA+TGG + chr2.2:61309398-61309417 None:intergenic 25.0%
!! CAGAAATACACATTTTCAAA+AGG + chr2.2:61308347-61308366 None:intergenic 25.0%
!! GTATTTCTGAATTCTTTGAA+AGG - chr2.2:61308358-61308377 MS.gene003041:intron 25.0%
!! TATATACTGACTATCCAATT+AGG - chr2.2:61307490-61307509 MS.gene003041:intron 25.0%
!!! GTAAAAATTGGGTCATTTTT+AGG - chr2.2:61306957-61306976 MS.gene003041:intron 25.0%
!!! TCGTTGTTTTTCATTTGATA+AGG - chr2.2:61306813-61306832 MS.gene003041:intron 25.0%
!!! TTGTTGATGATATGTTAGTT+TGG - chr2.2:61309439-61309458 MS.gene003041:intron 25.0%
AAATGTTGCTGTGTTAATTG+AGG + chr2.2:61309046-61309065 None:intergenic 30.0%
AAATTAGTCCTCTACTTTGT+AGG - chr2.2:61307172-61307191 MS.gene003041:CDS 30.0%
AACCTTAAAACCTTATGCTA+TGG - chr2.2:61308988-61309007 MS.gene003041:intron 30.0%
AACTAACATGTCAAGGATTA+TGG + chr2.2:61309234-61309253 None:intergenic 30.0%
ACATTATGATTCAATGTGCA+TGG - chr2.2:61309404-61309423 MS.gene003041:intron 30.0%
ATATAAACTTCTCTCTCTAC+TGG + chr2.2:61307473-61307492 None:intergenic 30.0%
ATTCTATTAAACTGCCAAGT+TGG - chr2.2:61307722-61307741 MS.gene003041:intron 30.0%
CATGAAAGACAAACAAACTA+GGG - chr2.2:61307354-61307373 MS.gene003041:intron 30.0%
CATTCCATAATTCATTCACT+TGG + chr2.2:61308395-61308414 None:intergenic 30.0%
CGTATAACAGTTATTGGATT+TGG - chr2.2:61306842-61306861 MS.gene003041:intron 30.0%
GAAAATTGAGAACTACTACA+TGG - chr2.2:61309145-61309164 MS.gene003041:intron 30.0%
GGTGAAAAATGCAATCTATT+TGG + chr2.2:61308061-61308080 None:intergenic 30.0%
TAACAAGTGGGTAAAACATA+AGG + chr2.2:61307780-61307799 None:intergenic 30.0%
TACTTCCGTATAACAGTTAT+TGG - chr2.2:61306836-61306855 MS.gene003041:intron 30.0%
TTAGCCACAAACTTTCAATT+TGG - chr2.2:61307818-61307837 MS.gene003041:intron 30.0%
TTTCAAAATGCTTCTGATGT+TGG - chr2.2:61307226-61307245 MS.gene003041:intron 30.0%
! AATCGTATAAAGCATCAAGA+AGG + chr2.2:61307397-61307416 None:intergenic 30.0%
! ATCATCAACAACGTACTTTT+GGG + chr2.2:61309430-61309449 None:intergenic 30.0%
! ATCGTATAAAGCATCAAGAA+GGG + chr2.2:61307396-61307415 None:intergenic 30.0%
! GTGATAGGCATGATATATTT+TGG - chr2.2:61309650-61309669 MS.gene003041:intron 30.0%
! TATCATCAACAACGTACTTT+TGG + chr2.2:61309431-61309450 None:intergenic 30.0%
! TATTTTGTGCAGTTCACTTT+TGG - chr2.2:61308183-61308202 MS.gene003041:intron 30.0%
! TGTATATTGACTATCCCATT+AGG + chr2.2:61307444-61307463 None:intergenic 30.0%
! TTTTGATGCTTCATGAAACT+TGG - chr2.2:61307036-61307055 MS.gene003041:intron 30.0%
! TTTTGCAAAATCAGCAACAT+TGG + chr2.2:61308240-61308259 None:intergenic 30.0%
!! ATTTTGTGCAGTTCACTTTT+GGG - chr2.2:61308184-61308203 MS.gene003041:intron 30.0%
!! TGTTTGAGTTTCCCATTTTT+GGG + chr2.2:61309476-61309495 None:intergenic 30.0%
!!! TTTCCTACTCTTATTTTCTC+CGG + chr2.2:61309129-61309148 None:intergenic 30.0%
AAAGACAAACAAACTAGGGT+TGG - chr2.2:61307358-61307377 MS.gene003041:intron 35.0%
AAGACAAACAAACTAGGGTT+GGG - chr2.2:61307359-61307378 MS.gene003041:intron 35.0%
AAGAGACAACAGTTTGAATC+AGG + chr2.2:61308082-61308101 None:intergenic 35.0%
AAGTGTGTATGAGTGTATTC+TGG - chr2.2:61307418-61307437 MS.gene003041:intron 35.0%
ACAGCTGTGTCAAAAAGAAA+AGG + chr2.2:61308496-61308515 None:intergenic 35.0%
AGACCAAATTGCTAACAAGT+GGG + chr2.2:61307792-61307811 None:intergenic 35.0%
AGTGAACTGCACAAAATAAG+TGG + chr2.2:61308181-61308200 None:intergenic 35.0%
ATGCCCAAGTGAATGAATTA+TGG - chr2.2:61308388-61308407 MS.gene003041:intron 35.0%
ATGTGATGTGTGCATAATTC+AGG - chr2.2:61308707-61308726 MS.gene003041:intron 35.0%
CACATCACATATAGTGATGA+AGG + chr2.2:61308697-61308716 None:intergenic 35.0%
CCATGAAAGACAAACAAACT+AGG - chr2.2:61307353-61307372 MS.gene003041:intron 35.0%
CTTAAAACCTTATGCTATGG+TGG - chr2.2:61308991-61309010 MS.gene003041:intron 35.0%
CTTTCCTATCCTCAACAAAT+AGG - chr2.2:61308272-61308291 MS.gene003041:CDS 35.0%
GAAAATTCGAAGTAACTCAC+TGG + chr2.2:61306756-61306775 None:intergenic 35.0%
GGAACCAAATTGAAAGTTTG+TGG + chr2.2:61307825-61307844 None:intergenic 35.0%
GTAGTTTAACCTTGTGTGAT+AGG - chr2.2:61309635-61309654 MS.gene003041:intron 35.0%
GTTAAATATAGGGACCAACT+TGG + chr2.2:61307739-61307758 None:intergenic 35.0%
TAATCTCGAGAACCTATTTG+AGG - chr2.2:61307931-61307950 MS.gene003041:CDS 35.0%
TAGTTGCAACTAACATGTCA+AGG + chr2.2:61309241-61309260 None:intergenic 35.0%
TATATACTGAGAGAGCTGAT+TGG + chr2.2:61308946-61308965 None:intergenic 35.0%
TATATCATGCCTATCACACA+AGG + chr2.2:61309647-61309666 None:intergenic 35.0%
TGAGTGTATTCTGACCTAAT+TGG + chr2.2:61307507-61307526 None:intergenic 35.0%
TTTAACACCACCATAGCATA+AGG + chr2.2:61309001-61309020 None:intergenic 35.0%
! CACCATAGCATAAGGTTTTA+AGG + chr2.2:61308993-61309012 None:intergenic 35.0%
! CATACCTATTTGTTGAGGAT+AGG + chr2.2:61308279-61308298 None:intergenic 35.0%
! CTCTGGTTCACTTATCATAA+TGG - chr2.2:61309103-61309122 MS.gene003041:intron 35.0%
! TTACCCACTTGTTAGCAATT+TGG - chr2.2:61307786-61307805 MS.gene003041:intron 35.0%
! TTGACAACAACATTGATGAC+TGG + chr2.2:61308113-61308132 None:intergenic 35.0%
!! CCTAGTTTGTTTGTCTTTCA+TGG + chr2.2:61307356-61307375 None:intergenic 35.0%
!! GTGTTTGAGTTTCCCATTTT+TGG + chr2.2:61309477-61309496 None:intergenic 35.0%
AAACATGTACCTTGTATGCG+AGG - chr2.2:61307307-61307326 MS.gene003041:intron 40.0%
AAGCCATGAGAGACAAACTA+GGG + chr2.2:61307572-61307591 None:intergenic 40.0%
AATGATCCATCGATCAGACA+AGG - chr2.2:61307617-61307636 MS.gene003041:intron 40.0%
AGATCACGCAAACAACAGTA+GGG + chr2.2:61308907-61308926 None:intergenic 40.0%
AGTGGTCTGAAGATCATTTG+TGG - chr2.2:61308629-61308648 MS.gene003041:intron 40.0%
ATGAGTGTATTCTGGCCTAA+TGG - chr2.2:61307426-61307445 MS.gene003041:intron 40.0%
CTGATACCCCACTTAAATGT+AGG + chr2.2:61308212-61308231 None:intergenic 40.0%
CTTCAAAGCTTCAAGCATTC+TGG - chr2.2:61306708-61306727 MS.gene003041:CDS 40.0%
GAATTTGGATCCTGACTCTA+AGG - chr2.2:61307858-61307877 MS.gene003041:intron 40.0%
GAGACCAAATTGCTAACAAG+TGG + chr2.2:61307793-61307812 None:intergenic 40.0%
GAGTCAAATTTGACAGAGAC+TGG - chr2.2:61307889-61307908 MS.gene003041:intron 40.0%
GCAAGATTATTCGTCAGAGA+AGG - chr2.2:61309753-61309772 MS.gene003041:CDS 40.0%
GGTTCACTTATCATAATGGC+CGG - chr2.2:61309107-61309126 MS.gene003041:intron 40.0%
GTGTGAAGTAGCATAATGTG+AGG - chr2.2:61307112-61307131 MS.gene003041:intron 40.0%
TAACTCGTTATCTACTTCCC+AGG - chr2.2:61309731-61309750 MS.gene003041:intron 40.0%
TCATACTAGTCCTTAGAGTC+AGG + chr2.2:61307871-61307890 None:intergenic 40.0%
TCTGACGAATAATCTTGCCT+GGG + chr2.2:61309751-61309770 None:intergenic 40.0%
TCTGATCGATGGATCATTCA+GGG + chr2.2:61307615-61307634 None:intergenic 40.0%
TGAGTGTATTCTGGCCTAAT+GGG - chr2.2:61307427-61307446 MS.gene003041:intron 40.0%
TTACAGCTACTGGACTTATC+TGG - chr2.2:61308515-61308534 MS.gene003041:intron 40.0%
TTGCAACGTTCACAGCAAAA+AGG + chr2.2:61309290-61309309 None:intergenic 40.0%
TTGGGCACCTACATTTAAGT+GGG - chr2.2:61308202-61308221 MS.gene003041:CDS 40.0%
TTTGGGCACCTACATTTAAG+TGG - chr2.2:61308201-61308220 MS.gene003041:CDS 40.0%
! ATGCGCATACCTATTTGTTG+AGG + chr2.2:61308284-61308303 None:intergenic 40.0%
! ATTTGCGTGACAGTTGGTAT+AGG + chr2.2:61309326-61309345 None:intergenic 40.0%
! CTGAATTCTTTGAAAGGAGC+AGG - chr2.2:61308364-61308383 MS.gene003041:intron 40.0%
!! ATCCTGAAGAGCATTGTAGA+AGG - chr2.2:61309574-61309593 MS.gene003041:intron 40.0%
!! TTTTGCTGTGAACGTTGCAA+TGG - chr2.2:61309290-61309309 MS.gene003041:intron 40.0%
!!! CGAAGTAACTCACTGGTTTT+GGG + chr2.2:61306749-61306768 None:intergenic 40.0%
!!! TCGAAGTAACTCACTGGTTT+TGG + chr2.2:61306750-61306769 None:intergenic 40.0%
AAATTCATCCCCAACTCTGC+AGG + chr2.2:61307961-61307980 None:intergenic 45.0%
ACCAACTGTCACGCAAATTG+CGG - chr2.2:61309328-61309347 MS.gene003041:intron 45.0%
AGAGTTGGGGATGAATTTGG+TGG - chr2.2:61307963-61307982 MS.gene003041:intron 45.0%
CACACACTTTGATCGTACAG+AGG - chr2.2:61307525-61307544 MS.gene003041:intron 45.0%
CAGATCACGCAAACAACAGT+AGG + chr2.2:61308908-61308927 None:intergenic 45.0%
CGATTGAGCTATCATGAGAG+AGG - chr2.2:61307330-61307349 MS.gene003041:intron 45.0%
CTCTGACGAATAATCTTGCC+TGG + chr2.2:61309752-61309771 None:intergenic 45.0%
GAAGCCATGAGAGACAAACT+AGG + chr2.2:61307573-61307592 None:intergenic 45.0%
GTCCTTCTACAATGCTCTTC+AGG + chr2.2:61309579-61309598 None:intergenic 45.0%
GTCTGATCGATGGATCATTC+AGG + chr2.2:61307616-61307635 None:intergenic 45.0%
TCTGCAGGACATCCTCAAAT+AGG + chr2.2:61307946-61307965 None:intergenic 45.0%
TGAGGATAGGAAAGCTTCTC+TGG + chr2.2:61308266-61308285 None:intergenic 45.0%
TGCAGAGTTGGGGATGAATT+TGG - chr2.2:61307960-61307979 MS.gene003041:CDS 45.0%
TGGCCGGAGAAAATAAGAGT+AGG - chr2.2:61309123-61309142 MS.gene003041:intron 45.0%
TGGGCACCTACATTTAAGTG+GGG - chr2.2:61308203-61308222 MS.gene003041:CDS 45.0%
TGTGTACCTTGTCTGATCGA+TGG + chr2.2:61307626-61307645 None:intergenic 45.0%
TTACGCTTTGCTTGCACTGA+AGG + chr2.2:61308656-61308675 None:intergenic 45.0%
! CAACCCTAGTTTGTCTCTCA+TGG - chr2.2:61307566-61307585 MS.gene003041:intron 45.0%
! TATGTTAGTTTGGCCCTTCC+CGG - chr2.2:61309449-61309468 MS.gene003041:intron 45.0%
!! GAGAGTGTCCTACAAAGTAG+AGG + chr2.2:61307183-61307202 None:intergenic 45.0%
AACGTTGCAATGGCAGGAAC+TGG - chr2.2:61309300-61309319 MS.gene003041:intron 50.0%
ACCGCAATTTGCGTGACAGT+TGG + chr2.2:61309332-61309351 None:intergenic 50.0%
GACACAGCTGTTACAGCTAC+TGG - chr2.2:61308505-61308524 MS.gene003041:intron 50.0%
GGATAGGAAAGCTTCTCTGG+TGG + chr2.2:61308263-61308282 None:intergenic 50.0%
TGAGGATGTCCTGCAGAGTT+GGG - chr2.2:61307949-61307968 MS.gene003041:CDS 50.0%
TTGAGGATGTCCTGCAGAGT+TGG - chr2.2:61307948-61307967 MS.gene003041:CDS 50.0%
! ATGTTAGTTTGGCCCTTCCC+GGG - chr2.2:61309450-61309469 MS.gene003041:intron 50.0%
!! AGTTTCCCATTTTTGGGCCC+GGG + chr2.2:61309470-61309489 None:intergenic 50.0%
!! GAGTTTCCCATTTTTGGGCC+CGG + chr2.2:61309471-61309490 None:intergenic 50.0%
!! GCATTCTGGAATCATCCAGC+TGG - chr2.2:61306722-61306741 MS.gene003041:intron 50.0%
GAGGATGTCCTGCAGAGTTG+GGG - chr2.2:61307950-61307969 MS.gene003041:CDS 55.0%
GCTCAATCGCCTCGCATACA+AGG + chr2.2:61307319-61307338 None:intergenic 55.0%
GCTGTGAACGTTGCAATGGC+AGG - chr2.2:61309294-61309313 MS.gene003041:intron 55.0%
!!! TCACTGGTTTTGGGACCAGC+TGG + chr2.2:61306740-61306759 None:intergenic 55.0%
CCCTTCCCGGGCCCAAAAAT+GGG - chr2.2:61309462-61309481 MS.gene003041:intron 60.0%
!! CCCATTTTTGGGCCCGGGAA+GGG + chr2.2:61309465-61309484 None:intergenic 60.0%
!! TCCCATTTTTGGGCCCGGGA+AGG + chr2.2:61309466-61309485 None:intergenic 60.0%
GCCCTTCCCGGGCCCAAAAA+TGG - chr2.2:61309461-61309480 MS.gene003041:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 61306701 61309792 61306701 ID=MS.gene003041
chr2.2 mRNA 61306701 61309792 61306701 ID=MS.gene003041.t1;Parent=MS.gene003041
chr2.2 exon 61309738 61309792 61309738 ID=MS.gene003041.t1.exon1;Parent=MS.gene003041.t1
chr2.2 CDS 61309738 61309792 61309738 ID=cds.MS.gene003041.t1;Parent=MS.gene003041.t1
chr2.2 exon 61308200 61308298 61308200 ID=MS.gene003041.t1.exon2;Parent=MS.gene003041.t1
chr2.2 CDS 61308200 61308298 61308200 ID=cds.MS.gene003041.t1;Parent=MS.gene003041.t1
chr2.2 exon 61307929 61307981 61307929 ID=MS.gene003041.t1.exon3;Parent=MS.gene003041.t1
chr2.2 CDS 61307929 61307981 61307929 ID=cds.MS.gene003041.t1;Parent=MS.gene003041.t1
chr2.2 exon 61307144 61307217 61307144 ID=MS.gene003041.t1.exon4;Parent=MS.gene003041.t1
chr2.2 CDS 61307144 61307217 61307144 ID=cds.MS.gene003041.t1;Parent=MS.gene003041.t1
chr2.2 exon 61306701 61306740 61306701 ID=MS.gene003041.t1.exon5;Parent=MS.gene003041.t1
chr2.2 CDS 61306701 61306740 61306701 ID=cds.MS.gene003041.t1;Parent=MS.gene003041.t1
Gene Sequence

>MS.gene003041

ATGGCGACTTCAAAGCTTCAAGCATTCTGGAATCATCCAGCTGGTCCCAAAACCAGTGAGTTACTTCGAATTTTCGTTCTTTTCGTATCCATTCGTGTTTTTATTTATGAATTCGTTGTTTTTCATTTGATAAGGTACTTCCGTATAACAGTTATTGGATTTGGATGTCTCATTATTGATTTATTATAAGTCAATGTTTACTTCGTAAGCTAAGTTTTTTTTTTCCGATTAACTTAATTTGACTTTTGATTGCTTTGTAAAAATTGGGTCATTTTTAGGGTATGAGTCATTATTCATTTTAATTTTTTATTTTGCTTGTTATGTTTATTGTGATATTTTGATGCTTCATGAAACTTGGACTTATTATTATCAAAGATCTGGAATTATAAACGAAATTGTTGGAAGTTTGATGTGTGAAGTAGCATAATGTGAGGCTTTTTAGAGATTAAAAAAAGTTAATAATAAACCAATAAATTAGTCCTCTACTTTGTAGGACACTCTCAAAGAGTGCTAAGATTATGAATATTTCAAAATGCTTCTGATGTTGGAGTATTAAACAGAGATAGCCAAAATCATATATACAAAGTTATGGCATATTATAGAAATAAACATGTACCTTGTATGCGAGGCGATTGAGCTATCATGAGAGAGGCCATGAAAGACAAACAAACTAGGGTTGGGAGCTCTTCTCTCCCTTCTTGATGCTTTATACGATTAAAGTGTGTATGAGTGTATTCTGGCCTAATGGGATAGTCAATATACACAAGCGCCAGTAGAGAGAGAAGTTTATATATACTGACTATCCAATTAGGTCAGAATACACTCACACACTTTGATCGTACAGAGGAAGAGTGAGATGATCTCTCAACCCTAGTTTGTCTCTCATGGCTTCTCTCATGATAGCTCAATCGCCCTGAATGATCCATCGATCAGACAAGGTACACATTTACTGTATTTCTATAATATATCATAACTTTGTATATATGATTTTGGTCATCTCAGTTTAATATTTCAACAGCTGATTCTATTAAACTGCCAAGTTGGTCCCTATATTTAACCACTTTTATCAATTAAATCCTTATGTTTTACCCACTTGTTAGCAATTTGGTCTCTAAATTTAGCCACAAACTTTCAATTTGGTTCCTAATATTTCTATTGAATTTGGATCCTGACTCTAAGGACTAGTATGAGTCAAATTTGACAGAGACTGGTACATTTTTTAAATAATCATAATCTCGAGAACCTATTTGAGGATGTCCTGCAGAGTTGGGGATGAATTTGGTGGTTTATTCAAAAAGTTGATGAAGATTTATATATGTTCTTCACACACATATACACATTACTTTAAGTACTAGTACCAAATAGATTGCATTTTTCACCTGATTCAAACTGTTGTCTCTTATTTGTTTCCAGTCATCAATGTTGTTGTCAAGTGTTGATGTTGACATTGTGAAGCTGTAATGAATGCATAAATTGACCACTTATTTTGTGCAGTTCACTTTTGGGCACCTACATTTAAGTGGGGTATCAGCATTGCCAATGTTGCTGATTTTGCAAAACCACCAGAGAAGCTTTCCTATCCTCAACAAATAGGTATGCGCATGCATATAGAACTGCATGTACTGATTTCGCTCATCATTCACCCTTTTGAAAATGTGTATTTCTGAATTCTTTGAAAGGAGCAGGCATGCCCAAGTGAATGAATTATGGAATGCTGAGCATTCAAGTTGCAAACAGTTTTAGTATATATTCTCATGTATTGGGTTTTATTTACATATATGCATTGCTGATTCCTTTTCTTTTTGACACAGCTGTTACAGCTACTGGACTTATCTGGTCACGTTACAGCACAGTAATCACTCCAGTAAGTTTTGTTGTTTTTTCAAAGGCAGATTACCTTTAACTTGTTCATGAAATATAGAAATACTAGTGGTCTGAAGATCATTTGTGGACCTTCAGTGCAAGCAAAGCGTAATATAGTTTCACTTTATTACCTTCATCACTATATGTGATGTGTGCATAATTCAGGATTATAGTTGCATTATCTCTCTTGCAAGAGTATCACATACTCAACTTGTAAGATTCTGTAACATCAATTAGACTATAACAATGTACATGTAATATGCAATGCTGAATCAAAACTTGAATTCCTGTTTTTTTGTTGCTTAGTTAAGTCATGTGATAAATAATAGTTTTCTTTAATCCCTACTGTTGTTTGCGTGATCTGATTTTTTATCGTATACCAATCAGCTCTCTCAGTATATATGTGTGTCTGCCAAGAAATAAAAACCTTAAAACCTTATGCTATGGTGGTGTTAAAATAGAGTATACAAGAATTTTAACCTCAATTAACACAGCAACATTTAGTTACTACTTTGTTACAAGACAATTAACTAAATGAACTCTGGTTCACTTATCATAATGGCCGGAGAAAATAAGAGTAGGAAAATTGAGAACTACTACATGGATTACTTTCTGCATATTATTGAAAGTGTAATTTTCTTTTAGTTTCTGTCTGCTATACAATTTTCCATAATCCTTGACATGTTAGTTGCAACTACTTACTATGTTGCAGAAAAATTGGAACCTTTTTGCTGTGAACGTTGCAATGGCAGGAACTGGCCTATACCAACTGTCACGCAAATTGCGGTAAGTGATATTTATCAATATTTTTGTGAAGTCTTTGTGAGATTGCCATTTGCTACATTATGATTCAATGTGCATGGCCCAAAAGTACGTTGTTGATGATATGTTAGTTTGGCCCTTCCCGGGCCCAAAAATGGGAAACTCAAACACTATTTTTAATCTAGTTTATTTTCTTTAGTGGGTTTGATTGAATTTATCATAAAATCAAATTGACATTTTTCTTGAAAATCCTGAAGAGCATTGTAGAAGGACAAAATACACAATTACGTGAAAAACTTCCTTTATTTTGTAGTTTAACCTTGTGTGATAGGCATGATATATTTTGGTGATGTTGCAAAGATTGATTTTGACACTATTTTGTATCTCCTTACTTATATGTAATCTTAACTCGTTATCTACTTCCCAGGCAAGATTATTCGTCAGAGAAGGCTGTAGAAAAAGAATGA
Protein sequence

>MS.gene003041.t1

MATSKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKLSYPQQIAVTATGLIWSRYSTVITPKNWNLFAVNVAMAGTGLYQLSRKLRQDYSSEKAVEKE