Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00305.t1 | XP_013463250.1 | 97.9 | 948 | 20 | 0 | 22 | 969 | 133 | 1080 | 0.00E+00 | 1906.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00305.t1 | Q8RXK8 | 76.6 | 949 | 217 | 4 | 22 | 969 | 146 | 1090 | 0.0e+00 | 1536.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00305.t1 | A0A072V611 | 97.9 | 948 | 20 | 0 | 22 | 969 | 133 | 1080 | 0.0e+00 | 1906.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene00305 | MS.gene26744 | PPI |
MS.gene030204 | MS.gene00305 | PPI |
MS.gene00305 | MS.gene063765 | PPI |
MS.gene00305 | MS.gene063767 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00305.t1 | MTR_2g436760 | 97.890 | 948 | 20 | 0 | 22 | 969 | 133 | 1080 | 0.0 | 1940 |
MS.gene00305.t1 | MTR_4g076850 | 26.578 | 824 | 506 | 23 | 17 | 784 | 35 | 815 | 1.41e-74 | 268 |
MS.gene00305.t1 | MTR_6g027620 | 26.811 | 787 | 452 | 19 | 24 | 785 | 105 | 792 | 4.36e-68 | 246 |
MS.gene00305.t1 | MTR_1g101620 | 23.063 | 555 | 364 | 15 | 304 | 811 | 358 | 896 | 5.56e-27 | 119 |
MS.gene00305.t1 | MTR_1g101620 | 27.160 | 162 | 115 | 1 | 20 | 178 | 128 | 289 | 3.74e-13 | 74.3 |
MS.gene00305.t1 | MTR_4g132500 | 29.677 | 155 | 94 | 2 | 21 | 174 | 111 | 251 | 5.96e-13 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00305.t1 | AT5G49030 | 76.712 | 949 | 216 | 4 | 22 | 969 | 332 | 1276 | 0.0 | 1518 |
MS.gene00305.t1 | AT5G49030 | 76.712 | 949 | 216 | 4 | 22 | 969 | 146 | 1090 | 0.0 | 1512 |
MS.gene00305.t1 | AT5G49030 | 79.950 | 808 | 159 | 2 | 22 | 828 | 146 | 951 | 0.0 | 1337 |
MS.gene00305.t1 | AT4G10320 | 27.004 | 811 | 506 | 21 | 24 | 784 | 42 | 816 | 1.01e-78 | 280 |
MS.gene00305.t1 | AT5G16715 | 26.582 | 553 | 343 | 14 | 310 | 842 | 318 | 827 | 1.15e-43 | 172 |
MS.gene00305.t1 | AT5G16715 | 32.227 | 211 | 126 | 5 | 24 | 231 | 102 | 298 | 1.01e-19 | 95.9 |
MS.gene00305.t1 | AT1G14610 | 23.538 | 684 | 426 | 24 | 304 | 930 | 396 | 1039 | 6.94e-30 | 128 |
MS.gene00305.t1 | AT1G14610 | 28.931 | 159 | 110 | 1 | 21 | 176 | 167 | 325 | 6.56e-15 | 80.1 |
MS.gene00305.t1 | AT4G04350 | 29.677 | 155 | 94 | 3 | 21 | 174 | 114 | 254 | 2.86e-11 | 68.2 |
Find 230 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGAGACTCCCTTGGCTTTC+CGG | 0.179744 | 2.1:-56488898 | MS.gene00305:CDS |
CAAATGGCCAAACACAAATT+TGG | 0.180556 | 2.1:+56492461 | None:intergenic |
CAAATTTGTGTTTGGCCATT+TGG | 0.194064 | 2.1:-56492460 | MS.gene00305:CDS |
CTTTACTGTTACCCTGAATT+AGG | 0.221861 | 2.1:+56484378 | None:intergenic |
GGCCTACCAATTGAATTAAA+AGG | 0.233183 | 2.1:-56494704 | MS.gene00305:intron |
TTTCAATATACAACCGAATA+TGG | 0.247537 | 2.1:-56486075 | MS.gene00305:CDS |
ATGCTATTGGCCGTGTAAAA+TGG | 0.247792 | 2.1:-56489955 | MS.gene00305:CDS |
ACATCCATCCAGTAGATAAT+AGG | 0.247871 | 2.1:-56490446 | MS.gene00305:CDS |
ACCATGCATCACTACCCTTT+TGG | 0.253122 | 2.1:+56489374 | None:intergenic |
ATCATCTACTGGAGATAGTA+TGG | 0.254048 | 2.1:+56490305 | None:intergenic |
TGCCAACGTTAGAGGCAAAA+TGG | 0.262283 | 2.1:-56490685 | MS.gene00305:CDS |
AGCTGATGTCCTGCGGCTTT+GGG | 0.271747 | 2.1:-56487147 | MS.gene00305:CDS |
CACTGCTGTTGTGAAATATT+TGG | 0.280637 | 2.1:-56490220 | MS.gene00305:CDS |
GAGCTGATGTCCTGCGGCTT+TGG | 0.284206 | 2.1:-56487148 | MS.gene00305:CDS |
GTCTGCAGCGCTTTGGAGTA+TGG | 0.294011 | 2.1:-56493920 | MS.gene00305:intron |
AGAACTTGTGCCAACGTTAG+AGG | 0.303488 | 2.1:-56490693 | MS.gene00305:CDS |
AAGGCTGTTGGGCTCTGATT+TGG | 0.316359 | 2.1:-56490639 | MS.gene00305:CDS |
TAGTGGTGAATGCCTAATTC+AGG | 0.321767 | 2.1:-56484390 | MS.gene00305:CDS |
GCCTTCTTCCCGGCCATAAC+AGG | 0.325622 | 2.1:+56495389 | None:intergenic |
CGAAATTTACCGGAAGTTAC+GGG | 0.332880 | 2.1:-56487063 | MS.gene00305:CDS |
TTCAGCAGAGGAACCATATT+CGG | 0.335158 | 2.1:+56486062 | None:intergenic |
TGACCTCCGGCCGCTCTGAT+TGG | 0.340062 | 2.1:-56489776 | MS.gene00305:CDS |
ATGCCAACATCTTTCACATT+TGG | 0.342388 | 2.1:+56484325 | None:intergenic |
AGCACTTGCAACTCTGAAAA+TGG | 0.346766 | 2.1:+56492517 | None:intergenic |
ATGGATGTGTGGTTTGATTC+AGG | 0.348908 | 2.1:-56489274 | MS.gene00305:intron |
TGAGTTAAAACAGAAGAATA+TGG | 0.349534 | 2.1:+56487370 | None:intergenic |
TTTAGTGGACTTGATGTTCT+TGG | 0.350017 | 2.1:-56490252 | MS.gene00305:CDS |
AGAATTCCCAAATTTGTGTT+TGG | 0.351444 | 2.1:-56492468 | MS.gene00305:CDS |
TCTGTTGCTCTAAATATTGT+TGG | 0.359250 | 2.1:+56490022 | None:intergenic |
TCTTGCTGAAGCCGAGTTAG+AGG | 0.363187 | 2.1:-56493469 | MS.gene00305:intron |
ACCTTCTGCAGCCTTCTTCC+CGG | 0.363368 | 2.1:+56495379 | None:intergenic |
GGGAATGTCCGGTCGTAGTT+GGG | 0.365307 | 2.1:-56490425 | MS.gene00305:CDS |
TCAGCTAAGTGGGGCAATAT+TGG | 0.367888 | 2.1:+56486120 | None:intergenic |
ACCTGGGCAGCTTCATATTC+CGG | 0.369013 | 2.1:+56493864 | None:intergenic |
GGATATTATAAATCGTTATA+AGG | 0.371113 | 2.1:-56494926 | MS.gene00305:intron |
CCCAACATATAATCGATCTT+TGG | 0.380587 | 2.1:+56486400 | None:intergenic |
GTCAAATATTCGAAATTTAC+CGG | 0.383879 | 2.1:-56487073 | MS.gene00305:CDS |
GTGAACCTTTGCATCTAAAC+TGG | 0.388723 | 2.1:+56484960 | None:intergenic |
ATTAGGCATTCACCACTATA+TGG | 0.390707 | 2.1:+56484395 | None:intergenic |
TATTCGGTTGTATATTGAAA+TGG | 0.391154 | 2.1:+56486078 | None:intergenic |
TGTAAAATGGGTTCCACCTC+AGG | 0.393018 | 2.1:-56489942 | MS.gene00305:intron |
TCGAAATTTACCGGAAGTTA+CGG | 0.395502 | 2.1:-56487064 | MS.gene00305:CDS |
CACAGTTCAATTTCTTCAGC+AGG | 0.397454 | 2.1:+56485988 | None:intergenic |
GAAGAAGCTGGGCAGTTTAG+TGG | 0.398281 | 2.1:-56490267 | MS.gene00305:CDS |
CATCCATCCAGTAGATAATA+GGG | 0.398599 | 2.1:-56490445 | MS.gene00305:CDS |
AAATGGCCAAACACAAATTT+GGG | 0.402978 | 2.1:+56492462 | None:intergenic |
AATTTGTATTCGAATCTAGA+TGG | 0.406223 | 2.1:-56486041 | MS.gene00305:CDS |
GCCTGTTATGGCCGGGAAGA+AGG | 0.408025 | 2.1:-56495390 | MS.gene00305:CDS |
GTCAGCTATTATAGCCCAAA+AGG | 0.408308 | 2.1:-56489389 | MS.gene00305:intron |
CTATCTCCAGTAGATGATAA+TGG | 0.408603 | 2.1:-56490300 | MS.gene00305:CDS |
TTTAACTCATGGATTTGTAT+TGG | 0.409298 | 2.1:-56487356 | MS.gene00305:CDS |
AGTAGGTCACTCGGCATTAG+AGG | 0.409404 | 2.1:+56492494 | None:intergenic |
CCAAAGATCGATTATATGTT+GGG | 0.412929 | 2.1:-56486400 | MS.gene00305:intron |
GATTATATTACAACAGAAAC+AGG | 0.417354 | 2.1:-56490399 | MS.gene00305:CDS |
TTCCGGATCTAGAGTAAGAT+AGG | 0.419289 | 2.1:+56493881 | None:intergenic |
GGAATATTCACTGAAGAAGC+TGG | 0.421962 | 2.1:-56490279 | MS.gene00305:CDS |
ACAACATCGTATTCAAGCTT+GGG | 0.421971 | 2.1:+56490824 | None:intergenic |
GCCAACGTTAGAGGCAAAAT+GGG | 0.423649 | 2.1:-56490684 | MS.gene00305:CDS |
ACGAACTTCCAAGGATTGAT+AGG | 0.428721 | 2.1:-56486840 | MS.gene00305:CDS |
GACGTGACAGGCAGATTATA+CGG | 0.429072 | 2.1:-56486872 | MS.gene00305:intron |
GGCTGAGATTCTTCCTTCAC+TGG | 0.431602 | 2.1:-56484441 | MS.gene00305:CDS |
AGGGAATGTCCGGTCGTAGT+TGG | 0.431863 | 2.1:-56490426 | MS.gene00305:CDS |
AACAACATCGTATTCAAGCT+TGG | 0.433057 | 2.1:+56490823 | None:intergenic |
GCCTTTGCTCTCAACTTCAA+TGG | 0.435628 | 2.1:+56494169 | None:intergenic |
CCGGCAGACCTGTATCTTGA+AGG | 0.438778 | 2.1:-56488879 | MS.gene00305:CDS |
AATGAACATGTCTCTTCATC+TGG | 0.439686 | 2.1:-56490785 | MS.gene00305:CDS |
AATATTCCATTATCATCTAC+TGG | 0.440234 | 2.1:+56490294 | None:intergenic |
TTAAAGTTCCCCGTAACTTC+CGG | 0.441014 | 2.1:+56487054 | None:intergenic |
TAAAGCTGCTGAATATGAAA+AGG | 0.444367 | 2.1:-56489308 | MS.gene00305:CDS |
GACGAGGGACTCCAGTGAAC+AGG | 0.448070 | 2.1:+56493501 | None:intergenic |
AATTTGGGAATTCTTGTAGT+AGG | 0.448385 | 2.1:+56492477 | None:intergenic |
AGTAAGCCATCTTTCATTCA+AGG | 0.449007 | 2.1:+56486014 | None:intergenic |
CAATGGTTTGCATCGGTTGA+GGG | 0.450860 | 2.1:-56489998 | MS.gene00305:CDS |
GCTTTATCACGATAATTAGC+TGG | 0.451049 | 2.1:+56489325 | None:intergenic |
ATTGTCTCTTCATTCATAAG+AGG | 0.454350 | 2.1:+56489687 | None:intergenic |
TATAGCCTTTCAAGGCCATC+TGG | 0.456459 | 2.1:+56493541 | None:intergenic |
TGCTATTGGCCGTGTAAAAT+GGG | 0.460785 | 2.1:-56489954 | MS.gene00305:CDS |
AATATTTGACGAAGAATTTG+AGG | 0.464565 | 2.1:+56487086 | None:intergenic |
GTTGCTGTTCAGATGCCCTC+TGG | 0.466928 | 2.1:-56484239 | MS.gene00305:CDS |
GCAATGGTTTGCATCGGTTG+AGG | 0.467108 | 2.1:-56489999 | MS.gene00305:CDS |
TCTCAGGAAGCACCTGCATA+TGG | 0.467513 | 2.1:-56487170 | MS.gene00305:intron |
AACACAAGTATCCGTATGAT+TGG | 0.471345 | 2.1:-56490057 | MS.gene00305:CDS |
GCCAAAGATCGATTATATGT+TGG | 0.471553 | 2.1:-56486401 | MS.gene00305:CDS |
TGTACATAGTTCAGATAGCT+TGG | 0.472440 | 2.1:+56484909 | None:intergenic |
GGACATTCCCTATTATCTAC+TGG | 0.473554 | 2.1:+56490438 | None:intergenic |
TTCTTCAAAGCGAAGATCGC+GGG | 0.473909 | 2.1:-56495414 | MS.gene00305:CDS |
AGAGGTGAATAGAGTGTTGG+AGG | 0.474272 | 2.1:-56485010 | MS.gene00305:CDS |
TCCCTATCTTACTCTAGATC+CGG | 0.475644 | 2.1:-56493883 | MS.gene00305:CDS |
GTTTCTAGTGTAGATTATAC+CGG | 0.476051 | 2.1:-56487125 | MS.gene00305:CDS |
TAAGTTATTCATAACATCTC+AGG | 0.479698 | 2.1:-56484860 | MS.gene00305:intron |
GGATTTGTATTGGATGAGAA+AGG | 0.479759 | 2.1:-56487346 | MS.gene00305:CDS |
TATGTGACTGGTCAGAAGTA+CGG | 0.480115 | 2.1:-56490333 | MS.gene00305:CDS |
TGAAAAGGGAACTGATACAA+TGG | 0.487025 | 2.1:-56489293 | MS.gene00305:CDS |
GATTGAAGTATTTGGCCAGA+TGG | 0.493116 | 2.1:-56493556 | MS.gene00305:CDS |
TAGCATCCATAGCAGCTTCA+CGG | 0.493818 | 2.1:+56489972 | None:intergenic |
TGAAGATCACCATTTGCATA+TGG | 0.494098 | 2.1:+56494979 | None:intergenic |
GCTCTGATTTGGAAAACTAC+AGG | 0.498287 | 2.1:-56490628 | MS.gene00305:intron |
TGAGAATTTGTCACTCATCA+TGG | 0.499519 | 2.1:-56490196 | MS.gene00305:CDS |
GACGGTCCTCCATATGCAAA+TGG | 0.502560 | 2.1:-56494988 | MS.gene00305:CDS |
AACAGAGGTGAATAGAGTGT+TGG | 0.504672 | 2.1:-56485013 | MS.gene00305:CDS |
TCGGTAGATATAGCCTTTCA+AGG | 0.504963 | 2.1:+56493533 | None:intergenic |
CCATGGAGTAGTAGTCCAAA+TGG | 0.506841 | 2.1:+56492445 | None:intergenic |
AATGCATGCCTATCAATCCT+TGG | 0.507505 | 2.1:+56486832 | None:intergenic |
GAAGCTGCTATGGATGCTAT+TGG | 0.507518 | 2.1:-56489968 | MS.gene00305:CDS |
GATCTGTTCCTTCAAGATAC+AGG | 0.508608 | 2.1:+56488871 | None:intergenic |
GTTGCAAATATACCATATAG+TGG | 0.509587 | 2.1:-56484407 | MS.gene00305:CDS |
CTAACTAGTATAGCTACAAC+AGG | 0.514075 | 2.1:-56488819 | MS.gene00305:intron |
TCTGCAGCGCTTTGGAGTAT+GGG | 0.514714 | 2.1:-56493919 | MS.gene00305:intron |
AGTAGATAATAGGGAATGTC+CGG | 0.514933 | 2.1:-56490436 | MS.gene00305:CDS |
ATTACAACAGAAACAGGAAC+AGG | 0.515186 | 2.1:-56490393 | MS.gene00305:CDS |
CTATTACTCTTACAATAGAA+AGG | 0.517052 | 2.1:+56486145 | None:intergenic |
GGGAACTTTAAGATACCTCT+TGG | 0.520121 | 2.1:-56487042 | MS.gene00305:CDS |
AGATAGCTTGGATGCCATGA+TGG | 0.521438 | 2.1:+56484921 | None:intergenic |
TGGACTATTCCTGCCAATGC+AGG | 0.522305 | 2.1:-56492425 | MS.gene00305:intron |
AATGAATGTCTGCAGCGCTT+TGG | 0.522628 | 2.1:-56493927 | MS.gene00305:intron |
GTGCCTGGATGGGATTGTCA+TGG | 0.522664 | 2.1:-56494725 | MS.gene00305:CDS |
TGCTGAAGAAATTGAACTGT+GGG | 0.524557 | 2.1:-56485986 | MS.gene00305:CDS |
CCACACATCCTCAGCTAAGT+GGG | 0.524734 | 2.1:+56486110 | None:intergenic |
ATGTGACTGGTCAGAAGTAC+GGG | 0.524951 | 2.1:-56490332 | MS.gene00305:CDS |
GGAATGTCCGGTCGTAGTTG+GGG | 0.525634 | 2.1:-56490424 | MS.gene00305:CDS |
TATACCGGGGATGTGATGAT+TGG | 0.527253 | 2.1:-56487110 | MS.gene00305:CDS |
GAGACAATTGAGCATATCAA+TGG | 0.528661 | 2.1:-56489672 | MS.gene00305:intron |
ATATTTGACGAAGAATTTGA+GGG | 0.529870 | 2.1:+56487087 | None:intergenic |
GAGGCAGAAAACCTGTTCAC+TGG | 0.532226 | 2.1:-56493512 | MS.gene00305:CDS |
GCTTTGGAGTATGGGCTGAC+TGG | 0.532411 | 2.1:-56493911 | MS.gene00305:CDS |
AGCCATCTTTCATTCAAGGT+TGG | 0.533962 | 2.1:+56486018 | None:intergenic |
GGGATTCCGTGAAGCTGCTA+TGG | 0.534844 | 2.1:-56489978 | MS.gene00305:CDS |
TAGCAGCGGCTGCAAAGAGT+AGG | 0.535679 | 2.1:+56484269 | None:intergenic |
AGGACATCAGCTCCATATGC+AGG | 0.535831 | 2.1:+56487158 | None:intergenic |
CCATTTGGACTACTACTCCA+TGG | 0.539779 | 2.1:-56492445 | MS.gene00305:CDS |
GGACTGGTTCATACAGCTCC+TGG | 0.539890 | 2.1:-56490372 | MS.gene00305:CDS |
CCTTCAAGATACAGGTCTGC+CGG | 0.540965 | 2.1:+56488879 | None:intergenic |
TTCAATACGACGAACTTCCA+AGG | 0.541025 | 2.1:-56486849 | MS.gene00305:CDS |
TGGTGCCAGTTTAGATGCAA+AGG | 0.543237 | 2.1:-56484965 | MS.gene00305:CDS |
AAAGCTGCTGAATATGAAAA+GGG | 0.545145 | 2.1:-56489307 | MS.gene00305:CDS |
AGTGGTGAATGCCTAATTCA+GGG | 0.548812 | 2.1:-56484389 | MS.gene00305:CDS |
GGTCAAGAAGATTATGTGAC+TGG | 0.551567 | 2.1:-56490345 | MS.gene00305:CDS |
TCTTGGCAAATCTTCACGAC+TGG | 0.553274 | 2.1:-56487025 | MS.gene00305:CDS |
AAATCAATTTACCTCTAACT+CGG | 0.558727 | 2.1:+56493458 | None:intergenic |
AACAGAGCAATGGTTTGCAT+CGG | 0.561582 | 2.1:-56490005 | MS.gene00305:CDS |
CACTAGAAACCCAAAGCCGC+AGG | 0.562466 | 2.1:+56487138 | None:intergenic |
GTTTCTATGTAGTATCCTGA+AGG | 0.562715 | 2.1:-56492563 | MS.gene00305:intron |
GGTAACAGTAAAGTGTGGAT+TGG | 0.562975 | 2.1:-56484368 | MS.gene00305:CDS |
TTTCTAGTGTAGATTATACC+GGG | 0.565743 | 2.1:-56487124 | MS.gene00305:CDS |
TTATACATCTGATTCCATCA+TGG | 0.566475 | 2.1:-56484935 | MS.gene00305:CDS |
TTTGGCCAGATGGCCTTGAA+AGG | 0.566596 | 2.1:-56493546 | MS.gene00305:CDS |
TTTAAATGCAATACCTGAGG+TGG | 0.568883 | 2.1:+56489929 | None:intergenic |
GGCCAACCTTGAATGAAAGA+TGG | 0.569286 | 2.1:-56486020 | MS.gene00305:CDS |
ACAGGTCTGCCGGAAAGCCA+AGG | 0.571077 | 2.1:+56488889 | None:intergenic |
CTTAAAGATGAGCAAGTCTG+TGG | 0.571334 | 2.1:-56487323 | MS.gene00305:CDS |
GCCACACATCCTCAGCTAAG+TGG | 0.571682 | 2.1:+56486109 | None:intergenic |
CTTTATCACGATAATTAGCT+GGG | 0.571752 | 2.1:+56489326 | None:intergenic |
TTCACTGGAGTCCCTCGTCA+CGG | 0.576013 | 2.1:-56493497 | MS.gene00305:CDS |
TCCGGAATATGAAGCTGCCC+AGG | 0.576526 | 2.1:-56493865 | MS.gene00305:intron |
TAATCTTCTTGACCATGTCC+AGG | 0.578269 | 2.1:+56490354 | None:intergenic |
AGGCCATGACAATCCCATCC+AGG | 0.579821 | 2.1:+56494722 | None:intergenic |
ATTCCCTATTATCTACTGGA+TGG | 0.580281 | 2.1:+56490442 | None:intergenic |
AGAATCTCAGCAATGACCTC+CGG | 0.580296 | 2.1:-56489789 | MS.gene00305:CDS |
AAGGAACAGATCAGCATCGA+GGG | 0.580658 | 2.1:-56488860 | MS.gene00305:CDS |
GCAAGAGCTGTCCGTGACGA+GGG | 0.580885 | 2.1:+56493486 | None:intergenic |
CATCAAAATAGAAACTTGAA+AGG | 0.581840 | 2.1:+56486426 | None:intergenic |
TCAGCTATTATAGCCCAAAA+GGG | 0.581918 | 2.1:-56489388 | MS.gene00305:intron |
GTATATCACGACAAAGGACA+TGG | 0.585385 | 2.1:-56489752 | MS.gene00305:CDS |
TATACACCAATCAGAGCGGC+CGG | 0.585448 | 2.1:+56489770 | None:intergenic |
GGACTTGATGTTCTTGGTGA+AGG | 0.585850 | 2.1:-56490246 | MS.gene00305:CDS |
ACCATTGAAGTTGAGAGCAA+AGG | 0.586214 | 2.1:-56494170 | MS.gene00305:CDS |
TATTTAGAGCAACAGAGCAA+TGG | 0.586768 | 2.1:-56490015 | MS.gene00305:CDS |
AACAGAAACAGGAACAGGAC+TGG | 0.587200 | 2.1:-56490388 | MS.gene00305:CDS |
AGCAGCTACTTCAGAGCCAG+AGG | 0.588709 | 2.1:+56484223 | None:intergenic |
AGCAAGAGCTGTCCGTGACG+AGG | 0.588968 | 2.1:+56493485 | None:intergenic |
AGCAGCGGCTGCAAAGAGTA+GGG | 0.590710 | 2.1:+56484270 | None:intergenic |
GTTCCAAATGTGAAAGATGT+TGG | 0.592042 | 2.1:-56484328 | MS.gene00305:CDS |
GAATATTCACTGAAGAAGCT+GGG | 0.592672 | 2.1:-56490278 | MS.gene00305:CDS |
TGGCATTATTCACACCAAGT+TGG | 0.594634 | 2.1:-56484308 | MS.gene00305:CDS |
ACATGTTCATCTTCCAGTGA+AGG | 0.594763 | 2.1:+56484428 | None:intergenic |
CCCACTTAGCTGAGGATGTG+TGG | 0.596456 | 2.1:-56486110 | MS.gene00305:CDS |
AGGGCCAATCATCACATCCC+CGG | 0.596642 | 2.1:+56487106 | None:intergenic |
ACAAGTATCCGTATGATTGG+CGG | 0.597232 | 2.1:-56490054 | MS.gene00305:CDS |
TCCGGATCTAGAGTAAGATA+GGG | 0.598551 | 2.1:+56493882 | None:intergenic |
GGTGAATAGAGTGTTGGAGG+TGG | 0.600036 | 2.1:-56485007 | MS.gene00305:CDS |
CCCAAAAGGGTAGTGATGCA+TGG | 0.600068 | 2.1:-56489375 | MS.gene00305:CDS |
TCATCTACTGGAGATAGTAT+GGG | 0.601319 | 2.1:+56490306 | None:intergenic |
GCATTGGCAGGAATAGTCCA+TGG | 0.603212 | 2.1:+56492428 | None:intergenic |
GTTCATACAGCTCCTGGACA+TGG | 0.604752 | 2.1:-56490366 | MS.gene00305:CDS |
GAAATTTACCGGAAGTTACG+GGG | 0.606021 | 2.1:-56487062 | MS.gene00305:CDS |
GCCGGGAAGAAGGCTGCAGA+AGG | 0.608859 | 2.1:-56495380 | MS.gene00305:intron |
CCTCCTTCAATCACACTACG+TGG | 0.612807 | 2.1:+56487286 | None:intergenic |
TCTTCAAAGCGAAGATCGCG+GGG | 0.612808 | 2.1:-56495413 | MS.gene00305:CDS |
TTTCTATGTAGTATCCTGAA+GGG | 0.615586 | 2.1:-56492562 | MS.gene00305:intron |
ATTGGTATATCTCGTGCTAG+TGG | 0.618281 | 2.1:-56484350 | MS.gene00305:CDS |
GCAAATGGTGATCTTCACAT+TGG | 0.619204 | 2.1:-56494973 | MS.gene00305:CDS |
TTTGCAGTCACTGGATAAGG+AGG | 0.625162 | 2.1:-56494209 | MS.gene00305:CDS |
GATCCACGTAGTGTGATTGA+AGG | 0.626229 | 2.1:-56487289 | MS.gene00305:CDS |
GAATGTCCGGTCGTAGTTGG+GGG | 0.628149 | 2.1:-56490423 | MS.gene00305:CDS |
GTGGATCGACTAGTTATACA+AGG | 0.629327 | 2.1:-56486200 | MS.gene00305:CDS |
CCACGTAGTGTGATTGAAGG+AGG | 0.629567 | 2.1:-56487286 | MS.gene00305:CDS |
TTCAGGGTAACAGTAAAGTG+TGG | 0.630750 | 2.1:-56484373 | MS.gene00305:CDS |
AATTCTTGTAGTAGGTCACT+CGG | 0.632605 | 2.1:+56492485 | None:intergenic |
CAGGTCTGCCGGAAAGCCAA+GGG | 0.632939 | 2.1:+56488890 | None:intergenic |
TCTCAAGACTGCAGCCCAGG+AGG | 0.637498 | 2.1:+56488923 | None:intergenic |
CTGCTGAAGAAATTGAACTG+TGG | 0.638800 | 2.1:-56485987 | MS.gene00305:CDS |
GGAAACTTCATTCTTCATGA+CGG | 0.638803 | 2.1:-56495006 | MS.gene00305:CDS |
TTCGAATACAAATTCAGCAG+AGG | 0.642488 | 2.1:+56486050 | None:intergenic |
AGTCGTGAAGATTTGCCAAG+AGG | 0.643848 | 2.1:+56487027 | None:intergenic |
TATATCACGACAAAGGACAT+GGG | 0.643904 | 2.1:-56489751 | MS.gene00305:CDS |
GTTCTTCAAAGCGAAGATCG+CGG | 0.647075 | 2.1:-56495415 | MS.gene00305:CDS |
CAAGTCTGTGGGTAATGTTG+TGG | 0.647942 | 2.1:-56487311 | MS.gene00305:CDS |
TTAAAGATGAGCAAGTCTGT+GGG | 0.652621 | 2.1:-56487322 | MS.gene00305:CDS |
AGATCACCATTTGCATATGG+AGG | 0.654345 | 2.1:+56494982 | None:intergenic |
GAACAGATCAGCATCGAGGG+TGG | 0.677211 | 2.1:-56488857 | MS.gene00305:CDS |
CAGCAACAACATCATAGCAG+CGG | 0.678013 | 2.1:+56484255 | None:intergenic |
ACACCAATCAGAGCGGCCGG+AGG | 0.682455 | 2.1:+56489773 | None:intergenic |
TTCTAGTGTAGATTATACCG+GGG | 0.683189 | 2.1:-56487123 | MS.gene00305:CDS |
ATTGGTGTATATCACGACAA+AGG | 0.684504 | 2.1:-56489758 | MS.gene00305:CDS |
TTGAAAGGCTATATCTACCG+AGG | 0.685038 | 2.1:-56493531 | MS.gene00305:CDS |
AATATTGCCCCACTTAGCTG+AGG | 0.685385 | 2.1:-56486118 | MS.gene00305:CDS |
CATATGGAGCTGATGTCCTG+CGG | 0.691014 | 2.1:-56487154 | MS.gene00305:CDS |
GCAGCTACTTCAGAGCCAGA+GGG | 0.691101 | 2.1:+56484224 | None:intergenic |
CACACATCCTCAGCTAAGTG+GGG | 0.691417 | 2.1:+56486111 | None:intergenic |
AGCGGCTGCAAAGAGTAGGG+TGG | 0.701928 | 2.1:+56484273 | None:intergenic |
TATCACGATAATTAGCTGGG+AGG | 0.702391 | 2.1:+56489329 | None:intergenic |
GAAGGAACAGATCAGCATCG+AGG | 0.705965 | 2.1:-56488861 | MS.gene00305:CDS |
CCAACGTTAGAGGCAAAATG+GGG | 0.706136 | 2.1:-56490683 | MS.gene00305:CDS |
GGTCTGAAAATGAACCAACT+TGG | 0.706446 | 2.1:+56484294 | None:intergenic |
GAACTGATACAATGGATGTG+TGG | 0.725989 | 2.1:-56489285 | MS.gene00305:CDS |
ATATCACGACAAAGGACATG+GGG | 0.726009 | 2.1:-56489750 | MS.gene00305:CDS |
AAAAGGGTAGTGATGCATGG+TGG | 0.733413 | 2.1:-56489372 | MS.gene00305:CDS |
GTGATATACACCAATCAGAG+CGG | 0.764588 | 2.1:+56489766 | None:intergenic |
CTTCAAAGCGAAGATCGCGG+GGG | 0.791322 | 2.1:-56495412 | MS.gene00305:CDS |
ACTGTGGGAAAAGATTCTCG+AGG | 0.794104 | 2.1:-56485971 | MS.gene00305:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 56484214 | 56495443 | 56484214 | ID=MS.gene00305 |
chr2.1 | mRNA | 56484214 | 56495443 | 56484214 | ID=MS.gene00305.t1;Parent=MS.gene00305 |
chr2.1 | exon | 56495381 | 56495443 | 56495381 | ID=MS.gene00305.t1.exon1;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56495381 | 56495443 | 56495381 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56494927 | 56495028 | 56494927 | ID=MS.gene00305.t1.exon2;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56494927 | 56495028 | 56494927 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56494705 | 56494774 | 56494705 | ID=MS.gene00305.t1.exon3;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56494705 | 56494774 | 56494705 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56494120 | 56494232 | 56494120 | ID=MS.gene00305.t1.exon4;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56494120 | 56494232 | 56494120 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56493866 | 56493934 | 56493866 | ID=MS.gene00305.t1.exon5;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56493866 | 56493934 | 56493866 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56493470 | 56493577 | 56493470 | ID=MS.gene00305.t1.exon6;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56493470 | 56493577 | 56493470 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56492426 | 56492573 | 56492426 | ID=MS.gene00305.t1.exon7;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56492426 | 56492573 | 56492426 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56490629 | 56490860 | 56490629 | ID=MS.gene00305.t1.exon8;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56490629 | 56490860 | 56490629 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56490184 | 56490470 | 56490184 | ID=MS.gene00305.t1.exon9;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56490184 | 56490470 | 56490184 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56489943 | 56490079 | 56489943 | ID=MS.gene00305.t1.exon10;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56489943 | 56490079 | 56489943 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56489673 | 56489820 | 56489673 | ID=MS.gene00305.t1.exon11;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56489673 | 56489820 | 56489673 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56489275 | 56489406 | 56489275 | ID=MS.gene00305.t1.exon12;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56489275 | 56489406 | 56489275 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56488820 | 56488948 | 56488820 | ID=MS.gene00305.t1.exon13;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56488820 | 56488948 | 56488820 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56487273 | 56487400 | 56487273 | ID=MS.gene00305.t1.exon14;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56487273 | 56487400 | 56487273 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56487022 | 56487186 | 56487022 | ID=MS.gene00305.t1.exon15;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56487022 | 56487186 | 56487022 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56486759 | 56486884 | 56486759 | ID=MS.gene00305.t1.exon16;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56486759 | 56486884 | 56486759 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56486401 | 56486474 | 56486401 | ID=MS.gene00305.t1.exon17;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56486401 | 56486474 | 56486401 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56485972 | 56486221 | 56485972 | ID=MS.gene00305.t1.exon18;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56485972 | 56486221 | 56485972 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56484861 | 56485040 | 56484861 | ID=MS.gene00305.t1.exon19;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56484861 | 56485040 | 56484861 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
chr2.1 | exon | 56484214 | 56484462 | 56484214 | ID=MS.gene00305.t1.exon20;Parent=MS.gene00305.t1 |
chr2.1 | CDS | 56484214 | 56484462 | 56484214 | ID=cds.MS.gene00305.t1;Parent=MS.gene00305.t1 |
Gene Sequence |
Protein sequence |