AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003108

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003108.t1 MTR_2g026310 97.096 551 15 1 1 551 1 550 0.0 1110
MS.gene003108.t1 MTR_2g026380 68.539 534 110 4 19 551 18 494 0.0 728
MS.gene003108.t1 MTR_7g063290 70.522 536 88 6 19 551 18 486 0.0 700
MS.gene003108.t1 MTR_3g082790 52.518 556 226 8 18 549 20 561 0.0 544
MS.gene003108.t1 MTR_3g082790 52.642 530 215 6 42 549 6 521 0.0 530
MS.gene003108.t1 MTR_3g081360 51.789 531 231 7 19 549 5 510 0.0 525
MS.gene003108.t1 MTR_3g081420 72.115 208 57 1 344 551 2 208 6.34e-100 301
MS.gene003108.t1 MTR_3g081380 60.494 162 62 1 19 178 16 177 8.41e-67 215
MS.gene003108.t1 MTR_7g062030 82.500 80 14 0 17 96 30 109 2.29e-36 132
MS.gene003108.t1 MTR_3g081390 65.556 90 31 0 90 179 36 125 2.24e-32 121
MS.gene003108.t1 MTR_3g081410 61.607 112 38 2 377 483 1 112 8.90e-31 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003108.t1 AT4G16420 58.919 555 151 10 1 551 1 482 0.0 631
MS.gene003108.t1 AT4G16420 58.676 559 150 11 1 551 1 486 0.0 628
MS.gene003108.t1 AT4G16420 58.676 559 149 11 1 551 1 485 0.0 627
MS.gene003108.t1 AT3G07740 46.181 576 257 11 1 552 1 547 2.75e-159 466
MS.gene003108.t1 AT3G07740 47.222 540 234 9 35 552 16 526 5.42e-157 459
MS.gene003108.t1 AT3G07740 45.626 583 257 12 1 552 1 554 1.16e-156 459
MS.gene003108.t1 AT3G07740 47.024 504 217 8 70 552 2 476 1.86e-142 420

Find 134 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCATTTCTTGAGGAATT+TGG 0.167298 2.2:+60523271 None:intergenic
TCTCCAATGGACAGAGATTT+TGG 0.183129 2.2:-60523304 MS.gene003108:CDS
TATATTGTAGGGTCAGATTC+TGG 0.192149 2.2:-60523544 MS.gene003108:intron
ACTCGCCGAAATGGAGTTTA+AGG 0.210601 2.2:-60523167 MS.gene003108:CDS
AAATGTATGGCATGGGAAAC+TGG 0.255134 2.2:-60524455 MS.gene003108:CDS
TTGACTTCTAATATGAATTC+AGG 0.263830 2.2:-60523645 MS.gene003108:intron
AACGTTTGTGCTGCGATTTA+AGG 0.269280 2.2:-60522298 MS.gene003108:CDS
AAATCCTTCTCAAATGGATT+TGG 0.279560 2.2:+60522901 None:intergenic
TCAATACATAAGTCAAAATC+TGG 0.298397 2.2:+60525230 None:intergenic
GCATGAACATGTCATATTTC+CGG 0.301157 2.2:+60522854 None:intergenic
TCAGCATCATTATCATATTC+AGG 0.301408 2.2:+60523196 None:intergenic
GAAAAGAATTCAAGAGCTTA+AGG 0.302238 2.2:-60522767 MS.gene003108:intron
AACCAAAAGGCATCCAATAA+AGG 0.306706 2.2:-60523487 MS.gene003108:CDS
TGCTGCGCATTTATTCAAAA+AGG 0.307711 2.2:-60523105 MS.gene003108:intron
AAGAAATGAAGGCCCTTCTT+TGG 0.309899 2.2:-60523260 MS.gene003108:CDS
GCCCTTTATTGGATGCCTTT+TGG 0.311044 2.2:+60523485 None:intergenic
ACAAAAGCAATCATTCTTAC+AGG 0.313342 2.2:-60525175 MS.gene003108:CDS
TGGTCCTGGAATTGTTAAAA+TGG 0.329731 2.2:-60523452 MS.gene003108:CDS
TTTGGAACCCCGTGATTGTT+CGG 0.334438 2.2:+60522525 None:intergenic
CTCCCCGTTCTTCCCTCTTC+CGG 0.336302 2.2:-60524358 MS.gene003108:intron
TCCCTCTCATTTGCCCAGAC+TGG 0.349166 2.2:-60524650 MS.gene003108:CDS
TCTGGAGACATTAATGCATT+TGG 0.356050 2.2:+60522507 None:intergenic
TCATCATCTGCATTCCAGTC+TGG 0.356882 2.2:+60524636 None:intergenic
TTGGAACCCCGTGATTGTTC+GGG 0.365263 2.2:+60522526 None:intergenic
ATGCTCATTAAGAAGGGAAT+TGG 0.386721 2.2:-60522140 MS.gene003108:CDS
CAGCCTTACTTGACTCTAGA+TGG 0.387712 2.2:+60523775 None:intergenic
ATGGATGCAACTGGATACTA+TGG 0.389391 2.2:-60522441 MS.gene003108:CDS
CTCTTGCATCTTCAGATAAA+CGG 0.389633 2.2:+60522265 None:intergenic
GTCAAGTTCTGTCAATGAAA+TGG 0.399893 2.2:-60522460 MS.gene003108:CDS
GGTGTTAAATCCTTCTCAAA+TGG 0.404781 2.2:+60522895 None:intergenic
AGTGGAGATAATTCAGAATC+TGG 0.407331 2.2:-60526297 MS.gene003108:CDS
TACTGTAATAAAGATATTAC+AGG 0.419202 2.2:-60525281 MS.gene003108:CDS
TAGGACATGTCTCATGTTGT+TGG 0.423324 2.2:-60524248 MS.gene003108:CDS
ATACCGGAAGAGGGAAGAAC+GGG 0.423481 2.2:+60524355 None:intergenic
ATGGAAGATTCCAACAAATC+TGG 0.423508 2.2:-60523681 MS.gene003108:CDS
AATTCAGAATCTGGAGTTGC+AGG 0.426709 2.2:-60526288 MS.gene003108:intron
GCCAGTGGAACCAGATTTGT+TGG 0.430345 2.2:+60523671 None:intergenic
AGAACTTGACCCTGCAGGTC+TGG 0.440690 2.2:+60522473 None:intergenic
ATATTGTAGGGTCAGATTCT+GGG 0.444203 2.2:-60523543 MS.gene003108:intron
CTTGACTCTAGATGGAGAAA+AGG 0.444237 2.2:+60523783 None:intergenic
AAGCATGCATAGAACACTAT+AGG 0.446368 2.2:-60524395 MS.gene003108:CDS
GTCAATGAAATGGATGCAAC+TGG 0.450262 2.2:-60522450 MS.gene003108:CDS
CATCATCTGCATTCCAGTCT+GGG 0.453025 2.2:+60524637 None:intergenic
GGTCTGGTACCAGCAGAGTC+TGG 0.454618 2.2:+60522489 None:intergenic
GTTCATGCGCTTTCATACTA+AGG 0.455273 2.2:-60522839 MS.gene003108:CDS
CATGGGAGATCTTAGCATAA+AGG 0.456713 2.2:-60523815 MS.gene003108:CDS
CTATCTGTACAAATGATTGC+TGG 0.459385 2.2:-60522239 MS.gene003108:CDS
AGTGTCCTTAAACTCCATTT+CGG 0.467485 2.2:+60523162 None:intergenic
ACCAAAAGGCATCCAATAAA+GGG 0.468979 2.2:-60523486 MS.gene003108:CDS
TCTTGCCATGGCGAAAGGGC+AGG 0.472164 2.2:-60524207 MS.gene003108:CDS
ATGTGGTCCCGAACAATCAC+GGG 0.473554 2.2:-60522533 MS.gene003108:CDS
CCTCCAAAATCTCTGTCCAT+TGG 0.475110 2.2:+60523301 None:intergenic
CAGCAATCATTTGTACAGAT+AGG 0.483057 2.2:+60522240 None:intergenic
TGGATACCATCAAAATTGAC+AGG 0.484436 2.2:-60522172 MS.gene003108:CDS
TGTGAGTCAGGTCAAGGAGC+AGG 0.487841 2.2:-60525335 MS.gene003108:intron
AGGACATGTCTCATGTTGTT+GGG 0.493324 2.2:-60524247 MS.gene003108:CDS
TGCAGCTAGTGCTAACCAAA+AGG 0.494192 2.2:-60523500 MS.gene003108:CDS
AAGGAGCAGGTGAAGCGAAA+AGG 0.494331 2.2:-60525322 MS.gene003108:CDS
TCGCAGGAAGCTCGTGCTGC+TGG 0.496946 2.2:-60522648 MS.gene003108:intron
AACTTCTTGCCATGGCGAAA+GGG 0.496960 2.2:-60524211 MS.gene003108:CDS
GTATGATATGCTCATTAAGA+AGG 0.500449 2.2:-60522147 MS.gene003108:CDS
AGTTGAAGCAGATAGATATC+TGG 0.502448 2.2:-60522613 MS.gene003108:CDS
TGGTTATAACGCGAAAAGAC+AGG 0.504452 2.2:-60523227 MS.gene003108:CDS
GGCACATGGCACACTTGATA+CGG 0.505024 2.2:+60525252 None:intergenic
CCACTGATTTCAACCAAAGA+AGG 0.505240 2.2:+60523247 None:intergenic
TGAGCAATTACTCGCCGAAA+TGG 0.506718 2.2:-60523176 MS.gene003108:CDS
CCAAATTCCTCAAGAAATGA+AGG 0.508733 2.2:-60523271 MS.gene003108:CDS
AAAGCCTGACATACCGGAAG+AGG 0.510365 2.2:+60524345 None:intergenic
AGGAGCAGGTGAAGCGAAAA+GGG 0.511931 2.2:-60525321 MS.gene003108:CDS
TTGACTCTAGATGGAGAAAA+GGG 0.511968 2.2:+60523784 None:intergenic
TCCAACAAATCTGGTTCCAC+TGG 0.512061 2.2:-60523672 MS.gene003108:CDS
AAAGGCATCCAATAAAGGGC+GGG 0.512200 2.2:-60523482 MS.gene003108:CDS
GAACTTCTTGCCATGGCGAA+AGG 0.516288 2.2:-60524212 MS.gene003108:CDS
ATCTTCAGATAAACGGTTGG+AGG 0.520579 2.2:+60522272 None:intergenic
GGGAATAGAAATGTATGGCA+TGG 0.523916 2.2:-60524463 MS.gene003108:CDS
AGTCCTATGTTCAGAGATAA+CGG 0.524266 2.2:+60522792 None:intergenic
CTCACCCTGCCCTTTCGCCA+TGG 0.527521 2.2:+60524202 None:intergenic
TTGACAGAACTTGACCCTGC+AGG 0.529299 2.2:+60522468 None:intergenic
CTTTATGCTAAGATCTCCCA+TGG 0.535543 2.2:+60523816 None:intergenic
CTTGCCATGGCGAAAGGGCA+GGG 0.537534 2.2:-60524206 MS.gene003108:CDS
AGAAGGGCCTTCATTTCTTG+AGG 0.537872 2.2:+60523264 None:intergenic
TCTGCTGGTACCAGACCTGC+AGG 0.542235 2.2:-60522483 MS.gene003108:CDS
AATTCATATTAGAAGTCAAA+CGG 0.543584 2.2:+60523649 None:intergenic
GGAATAGAAATGTATGGCAT+GGG 0.547477 2.2:-60524462 MS.gene003108:CDS
TGCATCTTCAGATAAACGGT+TGG 0.547701 2.2:+60522269 None:intergenic
CCTTCTTTGGTTGAAATCAG+TGG 0.553653 2.2:-60523247 MS.gene003108:CDS
TTAATGTCTCCAGACTCTGC+TGG 0.560448 2.2:-60522498 MS.gene003108:CDS
AATGTATGGCATGGGAAACT+GGG 0.562064 2.2:-60524454 MS.gene003108:CDS
TTATCCAAATCCATTTGAGA+AGG 0.565094 2.2:-60522905 MS.gene003108:CDS
CATGTGGTCCCGAACAATCA+CGG 0.569260 2.2:-60522534 MS.gene003108:CDS
TCATCAAATGTTCAAGAATG+TGG 0.572296 2.2:-60522192 MS.gene003108:CDS
GCAGCATGTGTGTTGACTGA+GGG 0.575476 2.2:+60523520 None:intergenic
CAATCATTCTTACAGGGTCA+TGG 0.577318 2.2:-60525168 MS.gene003108:intron
CATGGCGAAAGGGCAGGGTG+AGG 0.578638 2.2:-60524201 MS.gene003108:CDS
TCCAGTCTGGGCAAATGAGA+GGG 0.584062 2.2:+60524649 None:intergenic
AAGGCATCCAATAAAGGGCG+GGG 0.585408 2.2:-60523481 MS.gene003108:CDS
GTCATTGACAGATTCTCCAA+TGG 0.586027 2.2:-60523317 MS.gene003108:intron
AGAAAGAAGAATGCTGCAAG+TGG 0.586362 2.2:-60526315 MS.gene003108:CDS
CATACCGGAAGAGGGAAGAA+CGG 0.589060 2.2:+60524354 None:intergenic
TTCCAGTCTGGGCAAATGAG+AGG 0.590859 2.2:+60524648 None:intergenic
TATGATATGCTCATTAAGAA+GGG 0.593230 2.2:-60522146 MS.gene003108:CDS
AGGCATCCAATAAAGGGCGG+GGG 0.596003 2.2:-60523480 MS.gene003108:CDS
CCGAGGAAAAGTCAATATGC+CGG 0.597275 2.2:-60522873 MS.gene003108:CDS
GATTGTAACAGGACTTCCCA+TGG 0.597457 2.2:-60523833 MS.gene003108:intron
CACTGATTTCAACCAAAGAA+GGG 0.597471 2.2:+60523248 None:intergenic
CAGAAAAGAACTTCTTGCCA+TGG 0.598444 2.2:-60524219 MS.gene003108:CDS
CAATACATAAGTCAAAATCT+GGG 0.604695 2.2:+60525231 None:intergenic
GGGCAGGGTGAGGACAAGAA+AGG 0.604928 2.2:-60524191 MS.gene003108:intron
TCTGGCGCATAAGAGAAGAA+AGG 0.605068 2.2:-60522595 MS.gene003108:CDS
GCAGAAGTTGCTGAGCATGT+TGG 0.605076 2.2:-60524432 MS.gene003108:CDS
GAACCGTTATCTCTGAACAT+AGG 0.607443 2.2:-60522795 MS.gene003108:CDS
TGCAGCATGTGTGTTGACTG+AGG 0.608763 2.2:+60523519 None:intergenic
CCTGGAATTGTTAAAATGGA+AGG 0.609692 2.2:-60523448 MS.gene003108:intron
AATTCAATGGGTCGTTCTCG+TGG 0.613358 2.2:-60526532 None:intergenic
ATTAGAAGTCAAACGGCCAG+TGG 0.615296 2.2:+60523656 None:intergenic
AGCGAGAGAAAGTGCTCATG+TGG 0.619340 2.2:-60522550 MS.gene003108:CDS
TAAGTCAAAATCTGGGCACA+TGG 0.621677 2.2:+60525238 None:intergenic
AAGCCTGACATACCGGAAGA+GGG 0.625173 2.2:+60524346 None:intergenic
CAAAAGCAATCATTCTTACA+GGG 0.631809 2.2:-60525174 MS.gene003108:CDS
TGAGAAGGATTTAACACCCG+AGG 0.635433 2.2:-60522890 MS.gene003108:CDS
CGTTTATCTGAAGATGCAAG+AGG 0.641805 2.2:-60522264 MS.gene003108:CDS
AAAAGGCATCCAATAAAGGG+CGG 0.652819 2.2:-60523483 MS.gene003108:CDS
GTTTAAGGACACTGACACTG+AGG 0.653964 2.2:-60523152 MS.gene003108:CDS
ATTGTAACAGGACTTCCCAT+GGG 0.663000 2.2:-60523832 MS.gene003108:intron
TAAGGACACTGACACTGAGG+AGG 0.663510 2.2:-60523149 MS.gene003108:CDS
TGATGAAAGAAAGCGCAGGA+AGG 0.670308 2.2:-60522953 MS.gene003108:CDS
ACGATGATGATCCAAGCCAA+AGG 0.670643 2.2:-60526495 MS.gene003108:intron
TTTATGCTAAGATCTCCCAT+GGG 0.680782 2.2:+60523817 None:intergenic
GGCTTGATGAAAGAAAGCGC+AGG 0.689974 2.2:-60522957 MS.gene003108:CDS
CTGCTGGTACCAGACCTGCA+GGG 0.707483 2.2:-60522482 MS.gene003108:CDS
GGATACCATCAAAATTGACA+GGG 0.710009 2.2:-60522171 MS.gene003108:CDS
TATCTGCTTCAACTGAACTG+CGG 0.712712 2.2:+60522622 None:intergenic
TACCGGAAGAGGGAAGAACG+GGG 0.721077 2.2:+60524356 None:intergenic
TGTGGTCCCGAACAATCACG+GGG 0.753110 2.2:-60522532 MS.gene003108:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAAATAATATTTAAAGA+TGG + chr2.2:60522626-60522645 None:intergenic 10.0%
!! TATATTGTTTATATATTGTA+GGG - chr2.2:60525101-60525120 MS.gene003108:intron 10.0%
!! ATTGAAAGGAAATTATAATT+GGG + chr2.2:60525078-60525097 None:intergenic 15.0%
!! CTATATTGTTTATATATTGT+AGG - chr2.2:60525100-60525119 MS.gene003108:intron 15.0%
!! GAAAAATATAAACTTTAACT+TGG + chr2.2:60522604-60522623 None:intergenic 15.0%
!! TATCATATTCGTTTATATAA+AGG - chr2.2:60524356-60524375 MS.gene003108:intron 15.0%
!! TATTATAATCTATGATTCTA+TGG - chr2.2:60524703-60524722 MS.gene003108:intron 15.0%
!!! ATATGATAAAGCATTATATT+TGG - chr2.2:60524110-60524129 MS.gene003108:intron 15.0%
!!! CTTTTCTTATTATTGTAATT+GGG - chr2.2:60522200-60522219 MS.gene003108:CDS 15.0%
!!! GATATTAAGAATTTTGTATT+CGG + chr2.2:60523092-60523111 None:intergenic 15.0%
!!! TCTATATCAGTTTTTTAATA+CGG - chr2.2:60523956-60523975 MS.gene003108:intron 15.0%
!!! TCTTTTCTTATTATTGTAAT+TGG - chr2.2:60522199-60522218 MS.gene003108:CDS 15.0%
!! AATTCATATTAGAAGTCAAA+CGG + chr2.2:60525010-60525029 None:intergenic 20.0%
!! ACATTCTTCTTTATAAATAC+TGG - chr2.2:60524792-60524811 MS.gene003108:intron 20.0%
!! ACTAAAGTTAAAGACTTATA+TGG + chr2.2:60522752-60522771 None:intergenic 20.0%
!! AGAAACCTATAAAACTAAAA+TGG + chr2.2:60525584-60525603 None:intergenic 20.0%
!! AGGCATTATTATTTATTGTT+TGG + chr2.2:60524636-60524655 None:intergenic 20.0%
!! ATAACTGCTAAAATATGTTT+CGG - chr2.2:60524670-60524689 MS.gene003108:intron 20.0%
!! ATGAATAAAAATCAAACCTT+TGG + chr2.2:60522180-60522199 None:intergenic 20.0%
!! CTCAAAATCATAAACAATAA+TGG - chr2.2:60525622-60525641 MS.gene003108:intron 20.0%
!! GATTGAAAGGAAATTATAAT+TGG + chr2.2:60525079-60525098 None:intergenic 20.0%
!! TAAACAATATAGAGATTGAA+AGG + chr2.2:60525092-60525111 None:intergenic 20.0%
!! TACTGTAATAAAGATATTAC+AGG - chr2.2:60523375-60523394 MS.gene003108:intron 20.0%
!! TAGATGACAATGTAATTTAA+GGG + chr2.2:60523069-60523088 None:intergenic 20.0%
!! TATCTATAAGAGAAACTATT+TGG - chr2.2:60523802-60523821 MS.gene003108:CDS 20.0%
!! TATGTTTAATAAGACATCAA+AGG + chr2.2:60523541-60523560 None:intergenic 20.0%
!!! AACAACCATTTTAGTTTTAT+AGG - chr2.2:60525576-60525595 MS.gene003108:intron 20.0%
!!! AATATAAACTTTAACTTGGA+TGG + chr2.2:60522600-60522619 None:intergenic 20.0%
!!! ACGTTTTTCAATTTAAAGAT+AGG + chr2.2:60525675-60525694 None:intergenic 20.0%
!!! ATGTTTGATAATAATTTTCC+TGG - chr2.2:60523293-60523312 MS.gene003108:CDS 20.0%
! AACTATTTGGAAAGATTTAG+AGG - chr2.2:60523815-60523834 MS.gene003108:CDS 25.0%
! AATGTAATTTAAGGGATGTT+TGG + chr2.2:60523061-60523080 None:intergenic 25.0%
! AGGAAAACATTTGAAAGTAA+TGG + chr2.2:60523521-60523540 None:intergenic 25.0%
! ATACAATTAACCAAGTACAA+TGG + chr2.2:60522415-60522434 None:intergenic 25.0%
! ATAGCATACTGTTATAAATC+AGG - chr2.2:60524557-60524576 MS.gene003108:intron 25.0%
! CAATACATAAGTCAAAATCT+GGG + chr2.2:60523428-60523447 None:intergenic 25.0%
! CATCAACTTATTCAGTTATA+CGG + chr2.2:60523118-60523137 None:intergenic 25.0%
! GAATGTCGATAAGAATTTAA+TGG + chr2.2:60525930-60525949 None:intergenic 25.0%
! GTAGATGACAATGTAATTTA+AGG + chr2.2:60523070-60523089 None:intergenic 25.0%
! GTTCTATCATAAACCATATT+TGG + chr2.2:60523855-60523874 None:intergenic 25.0%
! TATGATATGCTCATTAAGAA+GGG - chr2.2:60526510-60526529 MS.gene003108:CDS 25.0%
! TCAATACATAAGTCAAAATC+TGG + chr2.2:60523429-60523448 None:intergenic 25.0%
! TGGTTTATGATAGAACATTA+TGG - chr2.2:60523859-60523878 MS.gene003108:intron 25.0%
! TTCCAAGTAGAGAAAAAAAA+AGG + chr2.2:60525952-60525971 None:intergenic 25.0%
! TTGACTTCTAATATGAATTC+AGG - chr2.2:60525011-60525030 MS.gene003108:intron 25.0%
! TTGGTTTAAATTAATTGCCT+AGG - chr2.2:60524063-60524082 MS.gene003108:intron 25.0%
! TTTAAATTGAAAAACGTTGC+AGG - chr2.2:60525678-60525697 MS.gene003108:intron 25.0%
! TTTCATTCTTTAGCGAAAAA+TGG + chr2.2:60523195-60523214 None:intergenic 25.0%
!! TAATGCAATTTTCATAACAG+CGG + chr2.2:60523738-60523757 None:intergenic 25.0%
!!! AGCAACAAATTTTTGGTTTT+AGG - chr2.2:60524172-60524191 MS.gene003108:intron 25.0%
!!! ATTAGTTTCTGTAGTTTTTG+GGG - chr2.2:60524515-60524534 MS.gene003108:intron 25.0%
!!! ATTGTTTATGATTTTGAGTG+TGG + chr2.2:60525620-60525639 None:intergenic 25.0%
!!! ATTTTGTTTTCTGAAACCAT+CGG - chr2.2:60526315-60526334 MS.gene003108:CDS 25.0%
!!! CATTAGTTTCTGTAGTTTTT+GGG - chr2.2:60524514-60524533 MS.gene003108:intron 25.0%
!!! CTTTTCTAGCAACAAATTTT+TGG - chr2.2:60524165-60524184 MS.gene003108:intron 25.0%
!!! GCAACAAATTTTTGGTTTTA+GGG - chr2.2:60524173-60524192 MS.gene003108:intron 25.0%
!!! TCATTAGTTTCTGTAGTTTT+TGG - chr2.2:60524513-60524532 MS.gene003108:intron 25.0%
!!! TTCCTTTTTTTTTCTCTACT+TGG - chr2.2:60525947-60525966 MS.gene003108:intron 25.0%
!!! TTCTAAATGTTGATTCAGAA+TGG - chr2.2:60524956-60524975 MS.gene003108:intron 25.0%
!!! TTTTAGGGAATAGAAATGTA+TGG - chr2.2:60524188-60524207 MS.gene003108:intron 25.0%
ACAAAAGCAATCATTCTTAC+AGG - chr2.2:60523481-60523500 MS.gene003108:CDS 30.0%
AGCAATGATAACAACAATGT+CGG + chr2.2:60523773-60523792 None:intergenic 30.0%
AGCATTGTGTAATGTCAATT+GGG + chr2.2:60525260-60525279 None:intergenic 30.0%
AGTTATCAGCAACATAAATG+AGG + chr2.2:60524656-60524675 None:intergenic 30.0%
ATAGATACAGTAAAATGCTG+TGG - chr2.2:60522274-60522293 MS.gene003108:CDS 30.0%
ATCACTCTGAGTTTAATTAC+AGG - chr2.2:60523616-60523635 MS.gene003108:intron 30.0%
ATGCTTTCAACTATATGTGT+AGG - chr2.2:60522312-60522331 MS.gene003108:intron 30.0%
CAAAAGCAATCATTCTTACA+GGG - chr2.2:60523482-60523501 MS.gene003108:CDS 30.0%
CATGTCCTAGTAAATAAGAA+TGG + chr2.2:60524397-60524416 None:intergenic 30.0%
CATTTAGAAGTCAATCAACA+TGG + chr2.2:60524945-60524964 None:intergenic 30.0%
GAAAAGAATTCAAGAGCTTA+AGG - chr2.2:60525889-60525908 MS.gene003108:intron 30.0%
GATTTCTAAGCTACAAATTG+TGG + chr2.2:60522818-60522837 None:intergenic 30.0%
GTATGATATGCTCATTAAGA+AGG - chr2.2:60526509-60526528 MS.gene003108:CDS 30.0%
TAAAAATCAAACCTTTGGCT+TGG + chr2.2:60522175-60522194 None:intergenic 30.0%
TAACCTTTCGATTGATCAAA+AGG + chr2.2:60523565-60523584 None:intergenic 30.0%
TCAGCATCATTATCATATTC+AGG + chr2.2:60525463-60525482 None:intergenic 30.0%
TCATCAAATGTTCAAGAATG+TGG - chr2.2:60526464-60526483 MS.gene003108:intron 30.0%
TTATCCAAATCCATTTGAGA+AGG - chr2.2:60525751-60525770 MS.gene003108:intron 30.0%
! AAATCCTTCTCAAATGGATT+TGG + chr2.2:60525758-60525777 None:intergenic 30.0%
! AATCAACATGGTATTGAACA+TGG + chr2.2:60524933-60524952 None:intergenic 30.0%
! GTCTCATTTATCACTTCTTT+TGG - chr2.2:60524583-60524602 MS.gene003108:intron 30.0%
! TAACCTTTTGATCAATCGAA+AGG - chr2.2:60523559-60523578 MS.gene003108:intron 30.0%
! TGATGAAATTTTGCTTCTAG+AGG - chr2.2:60524037-60524056 MS.gene003108:intron 30.0%
!! GAAGGTGTGCATTTTATATT+TGG - chr2.2:60525226-60525245 MS.gene003108:CDS 30.0%
!! GTAAGAATGATTGCTTTTGT+GGG + chr2.2:60523481-60523500 None:intergenic 30.0%
!! TAAGAATGATTGCTTTTGTG+GGG + chr2.2:60523480-60523499 None:intergenic 30.0%
!! TGTAAGAATGATTGCTTTTG+TGG + chr2.2:60523482-60523501 None:intergenic 30.0%
!!! ACAGTTTTAGAATGCAAACT+TGG + chr2.2:60526283-60526302 None:intergenic 30.0%
!!! TGATTGGTTGGTTTTTGTTT+TGG - chr2.2:60524741-60524760 MS.gene003108:intron 30.0%
AAAATCGATGAATGCAAAGG+TGG + chr2.2:60522673-60522692 None:intergenic 35.0%
AAGCATGCATAGAACACTAT+AGG - chr2.2:60524261-60524280 MS.gene003108:intron 35.0%
AATTAATTGCCTAGGAGTAG+CGG - chr2.2:60524071-60524090 MS.gene003108:intron 35.0%
AGAAACTGTAACCGTATGTT+TGG - chr2.2:60523008-60523027 MS.gene003108:intron 35.0%
AGATTTAGAGGTTAACGAGT+TGG - chr2.2:60523827-60523846 MS.gene003108:intron 35.0%
AGTCCTATGTTCAGAGATAA+CGG + chr2.2:60525867-60525886 None:intergenic 35.0%
AGTGGAGATAATTCAGAATC+TGG - chr2.2:60522359-60522378 MS.gene003108:intron 35.0%
AGTGTCCTTAAACTCCATTT+CGG + chr2.2:60525497-60525516 None:intergenic 35.0%
AGTTGAAGCAGATAGATATC+TGG - chr2.2:60526043-60526062 MS.gene003108:intron 35.0%
ATATTGTAGGGTCAGATTCT+GGG - chr2.2:60525113-60525132 MS.gene003108:intron 35.0%
ATCGAAGTGTAGGTTTGAAA+CGG - chr2.2:60523031-60523050 MS.gene003108:intron 35.0%
ATGCTCATTAAGAAGGGAAT+TGG - chr2.2:60526516-60526535 MS.gene003108:CDS 35.0%
ATGGAAGATTCCAACAAATC+TGG - chr2.2:60524975-60524994 MS.gene003108:intron 35.0%
CACAAAATCGATGAATGCAA+AGG + chr2.2:60522676-60522695 None:intergenic 35.0%
CAGCAATCATTTGTACAGAT+AGG + chr2.2:60526419-60526438 None:intergenic 35.0%
CAGCATTGTGTAATGTCAAT+TGG + chr2.2:60525261-60525280 None:intergenic 35.0%
CCAAATTCCTCAAGAAATGA+AGG - chr2.2:60525385-60525404 MS.gene003108:intron 35.0%
CCTGGAATTGTTAAAATGGA+AGG - chr2.2:60525208-60525227 MS.gene003108:CDS 35.0%
CCTTCATTTCTTGAGGAATT+TGG + chr2.2:60525388-60525407 None:intergenic 35.0%
CTATCATGTACCATTGTACT+TGG - chr2.2:60522402-60522421 MS.gene003108:intron 35.0%
CTATCTGTACAAATGATTGC+TGG - chr2.2:60526417-60526436 MS.gene003108:intron 35.0%
CTCTTGCATCTTCAGATAAA+CGG + chr2.2:60526394-60526413 None:intergenic 35.0%
CTGTCAATGACAAAAGAACT+AGG + chr2.2:60525330-60525349 None:intergenic 35.0%
GACAAATTATCCTGACAACA+AGG + chr2.2:60523984-60524003 None:intergenic 35.0%
GCATGAACATGTCATATTTC+CGG + chr2.2:60525805-60525824 None:intergenic 35.0%
GGAATAGAAATGTATGGCAT+GGG - chr2.2:60524194-60524213 MS.gene003108:CDS 35.0%
GGATACCATCAAAATTGACA+GGG - chr2.2:60526485-60526504 MS.gene003108:intron 35.0%
GGTGTTAAATCCTTCTCAAA+TGG + chr2.2:60525764-60525783 None:intergenic 35.0%
GTCAAGTTCTGTCAATGAAA+TGG - chr2.2:60526196-60526215 MS.gene003108:intron 35.0%
GTTGATGTTGACAGTTGTAA+TGG - chr2.2:60523131-60523150 MS.gene003108:CDS 35.0%
TACACTTCGATCCAAACATA+CGG + chr2.2:60523022-60523041 None:intergenic 35.0%
TATATTGTAGGGTCAGATTC+TGG - chr2.2:60525112-60525131 MS.gene003108:intron 35.0%
TATTCAAACAAACACTCCAC+AGG + chr2.2:60523161-60523180 None:intergenic 35.0%
TCAACTATATGTGTAGGTCA+AGG - chr2.2:60522318-60522337 MS.gene003108:intron 35.0%
TCTGGAGACATTAATGCATT+TGG + chr2.2:60526152-60526171 None:intergenic 35.0%
TGCTGCGCATTTATTCAAAA+AGG - chr2.2:60525551-60525570 MS.gene003108:intron 35.0%
TGGATACCATCAAAATTGAC+AGG - chr2.2:60526484-60526503 MS.gene003108:intron 35.0%
TGGTCCTGGAATTGTTAAAA+TGG - chr2.2:60525204-60525223 MS.gene003108:CDS 35.0%
TGGTTACTTGTGATTGTAAC+AGG - chr2.2:60524812-60524831 MS.gene003108:intron 35.0%
TTGACTCTAGATGGAGAAAA+GGG + chr2.2:60524875-60524894 None:intergenic 35.0%
TTTATGCTAAGATCTCCCAT+GGG + chr2.2:60524842-60524861 None:intergenic 35.0%
! ATACACCCTGTCAATTTTGA+TGG + chr2.2:60526493-60526512 None:intergenic 35.0%
! CAATTTTCATAACAGCGGTT+TGG + chr2.2:60523733-60523752 None:intergenic 35.0%
! GCTGACCATTCTTATTTACT+AGG - chr2.2:60524389-60524408 MS.gene003108:CDS 35.0%
! GTATTGAGTGCTTTTCTGTT+GGG - chr2.2:60523442-60523461 MS.gene003108:intron 35.0%
! TAACGAGTTGGATCCAAATA+TGG - chr2.2:60523839-60523858 MS.gene003108:intron 35.0%
! TATTGAGTGCTTTTCTGTTG+GGG - chr2.2:60523443-60523462 MS.gene003108:intron 35.0%
! TGTATTGAGTGCTTTTCTGT+TGG - chr2.2:60523441-60523460 MS.gene003108:intron 35.0%
!! AACCAAAAGGCATCCAATAA+AGG - chr2.2:60525169-60525188 MS.gene003108:CDS 35.0%
!! ACCAAAAGGCATCCAATAAA+GGG - chr2.2:60525170-60525189 MS.gene003108:CDS 35.0%
!! CACTGATTTCAACCAAAGAA+GGG + chr2.2:60525411-60525430 None:intergenic 35.0%
!! CCTTCCATTTTAACAATTCC+AGG + chr2.2:60525211-60525230 None:intergenic 35.0%
!! TACACAATGCTGATTCTTTG+AGG - chr2.2:60525269-60525288 MS.gene003108:CDS 35.0%
!!! ATTTTGCTTCTAGAGGTACT+TGG - chr2.2:60524044-60524063 MS.gene003108:intron 35.0%
AAATGTATGGCATGGGAAAC+TGG - chr2.2:60524201-60524220 MS.gene003108:CDS 40.0%
AACGTTTGTGCTGCGATTTA+AGG - chr2.2:60526358-60526377 MS.gene003108:intron 40.0%
AAGAAATGAAGGCCCTTCTT+TGG - chr2.2:60525396-60525415 MS.gene003108:intron 40.0%
AATGTATGGCATGGGAAACT+GGG - chr2.2:60524202-60524221 MS.gene003108:CDS 40.0%
AATTGTGGACAATTCCAACG+TGG + chr2.2:60522803-60522822 None:intergenic 40.0%
ACTAAGTGGAGTTAGCTACA+TGG + chr2.2:60523896-60523915 None:intergenic 40.0%
AGAAAGAAGAATGCTGCAAG+TGG - chr2.2:60522341-60522360 MS.gene003108:intron 40.0%
AGCTTCGAAATTATCACCGT+GGG - chr2.2:60522970-60522989 MS.gene003108:intron 40.0%
AGGACATGTCTCATGTTGTT+GGG - chr2.2:60524409-60524428 MS.gene003108:CDS 40.0%
ATCTTCAGATAAACGGTTGG+AGG + chr2.2:60526387-60526406 None:intergenic 40.0%
ATGGATGCAACTGGATACTA+TGG - chr2.2:60526215-60526234 MS.gene003108:intron 40.0%
ATGTAGCTAACTCCACTTAG+TGG - chr2.2:60523895-60523914 MS.gene003108:intron 40.0%
ATGTTGACAGTTGTAATGGC+AGG - chr2.2:60523135-60523154 MS.gene003108:CDS 40.0%
ATTGTAACAGGACTTCCCAT+GGG - chr2.2:60524824-60524843 MS.gene003108:intron 40.0%
CAATCATTCTTACAGGGTCA+TGG - chr2.2:60523488-60523507 MS.gene003108:CDS 40.0%
CAGAAAAGAACTTCTTGCCA+TGG - chr2.2:60524437-60524456 MS.gene003108:CDS 40.0%
CATGGGAGATCTTAGCATAA+AGG - chr2.2:60524841-60524860 MS.gene003108:intron 40.0%
CCTTCTTTGGTTGAAATCAG+TGG - chr2.2:60525409-60525428 MS.gene003108:intron 40.0%
CGTTTATCTGAAGATGCAAG+AGG - chr2.2:60526392-60526411 MS.gene003108:intron 40.0%
CTTCATGTGTACATGTTCAG+TGG - chr2.2:60522900-60522919 MS.gene003108:CDS 40.0%
CTTGACTCTAGATGGAGAAA+AGG + chr2.2:60524876-60524895 None:intergenic 40.0%
CTTTATGCTAAGATCTCCCA+TGG + chr2.2:60524843-60524862 None:intergenic 40.0%
GAACCGTTATCTCTGAACAT+AGG - chr2.2:60525861-60525880 MS.gene003108:intron 40.0%
GGGAATAGAAATGTATGGCA+TGG - chr2.2:60524193-60524212 MS.gene003108:CDS 40.0%
GTATGTTTGGATCGAAGTGT+AGG - chr2.2:60523021-60523040 MS.gene003108:intron 40.0%
GTCAATGAAATGGATGCAAC+TGG - chr2.2:60526206-60526225 MS.gene003108:intron 40.0%
GTCATTGACAGATTCTCCAA+TGG - chr2.2:60525339-60525358 MS.gene003108:intron 40.0%
GTTCATGCGCTTTCATACTA+AGG - chr2.2:60525817-60525836 MS.gene003108:intron 40.0%
TAACTCCACTTAGTGGGATA+AGG - chr2.2:60523902-60523921 MS.gene003108:intron 40.0%
TAAGTCAAAATCTGGGCACA+TGG + chr2.2:60523421-60523440 None:intergenic 40.0%
TAATTATCCTGCTAGACTGC+AGG - chr2.2:60523590-60523609 MS.gene003108:intron 40.0%
TAGCTTAGAAATCATCACCG+TGG - chr2.2:60522825-60522844 MS.gene003108:CDS 40.0%
TAGCTTCGAAATTATCACCG+TGG - chr2.2:60522969-60522988 MS.gene003108:intron 40.0%
TAGGACATGTCTCATGTTGT+TGG - chr2.2:60524408-60524427 MS.gene003108:CDS 40.0%
TATCTGCTTCAACTGAACTG+CGG + chr2.2:60526037-60526056 None:intergenic 40.0%
TATTTCGAATGCGAAACACG+TGG - chr2.2:60522558-60522577 MS.gene003108:CDS 40.0%
TCATTCAAAGCCTGACATAC+CGG + chr2.2:60524320-60524339 None:intergenic 40.0%
TGCATCTTCAGATAAACGGT+TGG + chr2.2:60526390-60526409 None:intergenic 40.0%
TGGTTATAACGCGAAAAGAC+AGG - chr2.2:60525429-60525448 MS.gene003108:intron 40.0%
TGTACTGTGTAACTGCACTA+TGG - chr2.2:60522450-60522469 MS.gene003108:CDS 40.0%
TGTAGCTAACTCCACTTAGT+GGG - chr2.2:60523896-60523915 MS.gene003108:intron 40.0%
TTAAATTCACCGCTACTCCT+AGG + chr2.2:60524083-60524102 None:intergenic 40.0%
! AATTCAGAATCTGGAGTTGC+AGG - chr2.2:60522368-60522387 MS.gene003108:intron 40.0%
! AGAGCTTAAGGTTTGAGACA+TGG - chr2.2:60525901-60525920 MS.gene003108:intron 40.0%
! CATTTGTTGAACATGATCGC+AGG - chr2.2:60525992-60526011 MS.gene003108:intron 40.0%
! GCTTCTGATTTTTCGCTGAT+TGG - chr2.2:60524725-60524744 MS.gene003108:intron 40.0%
! TAATACGGTTCCTTGTTGTC+AGG - chr2.2:60523971-60523990 MS.gene003108:intron 40.0%
! TCTCCAATGGACAGAGATTT+TGG - chr2.2:60525352-60525371 MS.gene003108:intron 40.0%
! TCTCCATCTAGAGTCAAGTA+AGG - chr2.2:60524878-60524897 MS.gene003108:intron 40.0%
!! AAAAGGCATCCAATAAAGGG+CGG - chr2.2:60525173-60525192 MS.gene003108:CDS 40.0%
!! ATTTTGAGTGTGGATGACTC+AGG + chr2.2:60525610-60525629 None:intergenic 40.0%
!! CCACTGATTTCAACCAAAGA+AGG + chr2.2:60525412-60525431 None:intergenic 40.0%
!! CTGATTTTTCGCTGATTGGT+TGG - chr2.2:60524729-60524748 MS.gene003108:intron 40.0%
!!! GTTTTTTGTGAGTCAGGTCA+AGG - chr2.2:60523315-60523334 MS.gene003108:intron 40.0%
!!! TTCCTGGTTTTTTGTGAGTC+AGG - chr2.2:60523309-60523328 MS.gene003108:CDS 40.0%
AACAATGTCGGCGAAACTAG+TGG + chr2.2:60523761-60523780 None:intergenic 45.0%
AACTTCTTGCCATGGCGAAA+GGG - chr2.2:60524445-60524464 MS.gene003108:CDS 45.0%
ACGATGATGATCCAAGCCAA+AGG - chr2.2:60522161-60522180 MS.gene003108:CDS 45.0%
ACTCGCCGAAATGGAGTTTA+AGG - chr2.2:60525489-60525508 MS.gene003108:intron 45.0%
AGAAGGGCCTTCATTTCTTG+AGG + chr2.2:60525395-60525414 None:intergenic 45.0%
ATTAGAAGTCAAACGGCCAG+TGG + chr2.2:60525003-60525022 None:intergenic 45.0%
CAGCCTTACTTGACTCTAGA+TGG + chr2.2:60524884-60524903 None:intergenic 45.0%
CATCATCTGCATTCCAGTCT+GGG + chr2.2:60524022-60524041 None:intergenic 45.0%
CCGAGGAAAAGTCAATATGC+CGG - chr2.2:60525783-60525802 MS.gene003108:intron 45.0%
CCTCCAAAATCTCTGTCCAT+TGG + chr2.2:60525358-60525377 None:intergenic 45.0%
GACCTGACTCACAAAAAACC+AGG + chr2.2:60523314-60523333 None:intergenic 45.0%
GATTGTAACAGGACTTCCCA+TGG - chr2.2:60524823-60524842 MS.gene003108:intron 45.0%
GTTTAAGGACACTGACACTG+AGG - chr2.2:60525504-60525523 MS.gene003108:intron 45.0%
TCATCATCTGCATTCCAGTC+TGG + chr2.2:60524023-60524042 None:intergenic 45.0%
TCCAACGTGGAAACAAACAC+AGG + chr2.2:60522790-60522809 None:intergenic 45.0%
TCTGGCGCATAAGAGAAGAA+AGG - chr2.2:60526061-60526080 MS.gene003108:intron 45.0%
TGAGAAGGATTTAACACCCG+AGG - chr2.2:60525766-60525785 MS.gene003108:intron 45.0%
TGAGCAATTACTCGCCGAAA+TGG - chr2.2:60525480-60525499 MS.gene003108:intron 45.0%
TGCAGCTAGTGCTAACCAAA+AGG - chr2.2:60525156-60525175 MS.gene003108:intron 45.0%
TGGATGGAAATCACCGTGTT+CGG + chr2.2:60522584-60522603 None:intergenic 45.0%
TTAATGTCTCCAGACTCTGC+TGG - chr2.2:60526158-60526177 MS.gene003108:intron 45.0%
! ATTATCACCGTGGGAAGTGT+CGG - chr2.2:60522979-60522998 MS.gene003108:intron 45.0%
! CCAATGGACAGAGATTTTGG+AGG - chr2.2:60525355-60525374 MS.gene003108:intron 45.0%
! GCAACAATTTTCTCGCATCC+TGG + chr2.2:60522859-60522878 None:intergenic 45.0%
! GCCCTTTATTGGATGCCTTT+TGG + chr2.2:60525174-60525193 None:intergenic 45.0%
! GTACACATGAAGTGCTTGTC+TGG + chr2.2:60522892-60522911 None:intergenic 45.0%
! TCCAACAAATCTGGTTCCAC+TGG - chr2.2:60524984-60525003 MS.gene003108:intron 45.0%
! TGATGAAAGAAAGCGCAGGA+AGG - chr2.2:60525703-60525722 MS.gene003108:intron 45.0%
! TTTGGAACCCCGTGATTGTT+CGG + chr2.2:60526134-60526153 None:intergenic 45.0%
!! AAAGGCATCCAATAAAGGGC+GGG - chr2.2:60525174-60525193 MS.gene003108:CDS 45.0%
!! TGTGTTGCTTGCTCTTCGTA+AGG - chr2.2:60522692-60522711 MS.gene003108:intron 45.0%
!!! CCGGCATATTGACTTTTCCT+CGG + chr2.2:60525786-60525805 None:intergenic 45.0%
!!! CGGCATATTGACTTTTCCTC+GGG + chr2.2:60525785-60525804 None:intergenic 45.0%
!!! CATTTTTATTTTATAAATAT+TGG - chr2.2:60524767-60524786 MS.gene003108:intron 5.0%
AAAGCCTGACATACCGGAAG+AGG + chr2.2:60524314-60524333 None:intergenic 50.0%
AAGCCTGACATACCGGAAGA+GGG + chr2.2:60524313-60524332 None:intergenic 50.0%
AAGGAGCAGGTGAAGCGAAA+AGG - chr2.2:60523334-60523353 MS.gene003108:intron 50.0%
AGGAGCAGGTGAAGCGAAAA+GGG - chr2.2:60523335-60523354 MS.gene003108:intron 50.0%
ATACCGGAAGAGGGAAGAAC+GGG + chr2.2:60524304-60524323 None:intergenic 50.0%
CAAAGGTGGCGACATGCAAT+TGG + chr2.2:60522659-60522678 None:intergenic 50.0%
CATACCGGAAGAGGGAAGAA+CGG + chr2.2:60524305-60524324 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr2.2:60523907-60523926 MS.gene003108:intron 50.0%
CTGGCAGAATTTACAGCCGA+TGG + chr2.2:60526334-60526353 None:intergenic 50.0%
GAACTTCTTGCCATGGCGAA+AGG - chr2.2:60524444-60524463 MS.gene003108:CDS 50.0%
GCAGAAGTTGCTGAGCATGT+TGG - chr2.2:60524224-60524243 MS.gene003108:CDS 50.0%
GCCAGTGGAACCAGATTTGT+TGG + chr2.2:60524988-60525007 None:intergenic 50.0%
GCCTGTGTTTGTTTCCACGT+TGG - chr2.2:60522786-60522805 MS.gene003108:CDS 50.0%
GGCACATGGCACACTTGATA+CGG + chr2.2:60523407-60523426 None:intergenic 50.0%
TAAGGACACTGACACTGAGG+AGG - chr2.2:60525507-60525526 MS.gene003108:intron 50.0%
TCCAGTCTGGGCAAATGAGA+GGG + chr2.2:60524010-60524029 None:intergenic 50.0%
TGATCAACCTGCAGTCTAGC+AGG + chr2.2:60523600-60523619 None:intergenic 50.0%
TTCCAGTCTGGGCAAATGAG+AGG + chr2.2:60524011-60524030 None:intergenic 50.0%
TTGACAGAACTTGACCCTGC+AGG + chr2.2:60526191-60526210 None:intergenic 50.0%
TTGGAACCCCGTGATTGTTC+GGG + chr2.2:60526133-60526152 None:intergenic 50.0%
! AAGGCATCCAATAAAGGGCG+GGG - chr2.2:60525175-60525194 MS.gene003108:CDS 50.0%
! CATCGGCTGTAAATTCTGCC+AGG - chr2.2:60526332-60526351 MS.gene003108:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr2.2:60523910-60523929 None:intergenic 50.0%
! GGCTTGATGAAAGAAAGCGC+AGG - chr2.2:60525699-60525718 MS.gene003108:intron 50.0%
!! AGCGAGAGAAAGTGCTCATG+TGG - chr2.2:60526106-60526125 MS.gene003108:intron 50.0%
!! GCAGCATGTGTGTTGACTGA+GGG + chr2.2:60525139-60525158 None:intergenic 50.0%
!! TGCAGCATGTGTGTTGACTG+AGG + chr2.2:60525140-60525159 None:intergenic 50.0%
!! TTATCACCGTGGGAAGTGTC+GGG - chr2.2:60522980-60522999 MS.gene003108:intron 50.0%
AATAAAGGGCGGGGGAAAGG+TGG - chr2.2:60525184-60525203 MS.gene003108:CDS 55.0%
ACCTTTCCCCCGCCCTTTAT+TGG + chr2.2:60525185-60525204 None:intergenic 55.0%
AGAACTTGACCCTGCAGGTC+TGG + chr2.2:60526186-60526205 None:intergenic 55.0%
AGGCATCCAATAAAGGGCGG+GGG - chr2.2:60525176-60525195 MS.gene003108:CDS 55.0%
ATCACCGTGGAATGTGTGCC+AGG - chr2.2:60522838-60522857 MS.gene003108:CDS 55.0%
CAGTTGTAATGGCAGGCCTG+TGG - chr2.2:60523142-60523161 MS.gene003108:CDS 55.0%
CGCAGCACAAACGTTTCTCC+TGG + chr2.2:60526353-60526372 None:intergenic 55.0%
CTTCCCTCTTCCGGTATGTC+AGG - chr2.2:60524307-60524326 MS.gene003108:intron 55.0%
GCATCCTGGCACACATTCCA+CGG + chr2.2:60522845-60522864 None:intergenic 55.0%
TACCGGAAGAGGGAAGAACG+GGG + chr2.2:60524303-60524322 None:intergenic 55.0%
TCCAATAAAGGGCGGGGGAA+AGG - chr2.2:60525181-60525200 MS.gene003108:CDS 55.0%
TCCCTCTCATTTGCCCAGAC+TGG - chr2.2:60524006-60524025 MS.gene003108:intron 55.0%
TGTGAGTCAGGTCAAGGAGC+AGG - chr2.2:60523321-60523340 MS.gene003108:intron 55.0%
! GTGCTTTTCTGTTGGGGCTG+AGG - chr2.2:60523449-60523468 MS.gene003108:CDS 55.0%
CTCCCCGTTCTTCCCTCTTC+CGG - chr2.2:60524298-60524317 MS.gene003108:intron 60.0%
CTGCTGGTACCAGACCTGCA+GGG - chr2.2:60526174-60526193 MS.gene003108:intron 60.0%
CTTGCCATGGCGAAAGGGCA+GGG - chr2.2:60524450-60524469 MS.gene003108:CDS 60.0%
GCGAAACACGTGGCCGAACA+CGG - chr2.2:60522568-60522587 MS.gene003108:CDS 60.0%
GGGCAGGGTGAGGACAAGAA+AGG - chr2.2:60524465-60524484 MS.gene003108:CDS 60.0%
GGTCTGGTACCAGCAGAGTC+TGG + chr2.2:60526170-60526189 None:intergenic 60.0%
TCGCATCCCGACACTTCCCA+CGG + chr2.2:60522989-60523008 None:intergenic 60.0%
TCTGCTGGTACCAGACCTGC+AGG - chr2.2:60526173-60526192 MS.gene003108:intron 60.0%
TCTTGCCATGGCGAAAGGGC+AGG - chr2.2:60524449-60524468 MS.gene003108:CDS 60.0%
CATGGCGAAAGGGCAGGGTG+AGG - chr2.2:60524455-60524474 MS.gene003108:CDS 65.0%
CTCACCCTGCCCTTTCGCCA+TGG + chr2.2:60524457-60524476 None:intergenic 65.0%
TCGCAGGAAGCTCGTGCTGC+TGG - chr2.2:60526008-60526027 MS.gene003108:intron 65.0%
GGGCGGGGGAAAGGTGGTCC+TGG - chr2.2:60525190-60525209 MS.gene003108:CDS 75.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 60522130 60526548 60522130 ID=MS.gene003108
chr2.2 mRNA 60522130 60526548 60522130 ID=MS.gene003108.t1;Parent=MS.gene003108
chr2.2 exon 60526496 60526548 60526496 ID=MS.gene003108.t1.exon1;Parent=MS.gene003108.t1
chr2.2 CDS 60526496 60526548 60526496 ID=cds.MS.gene003108.t1;Parent=MS.gene003108.t1
chr2.2 exon 60526289 60526344 60526289 ID=MS.gene003108.t1.exon2;Parent=MS.gene003108.t1
chr2.2 CDS 60526289 60526344 60526289 ID=cds.MS.gene003108.t1;Parent=MS.gene003108.t1
chr2.2 exon 60525169 60525347 60525169 ID=MS.gene003108.t1.exon3;Parent=MS.gene003108.t1
chr2.2 CDS 60525169 60525347 60525169 ID=cds.MS.gene003108.t1;Parent=MS.gene003108.t1
chr2.2 exon 60524620 60524685 60524620 ID=MS.gene003108.t1.exon4;Parent=MS.gene003108.t1
chr2.2 CDS 60524620 60524685 60524620 ID=cds.MS.gene003108.t1;Parent=MS.gene003108.t1
chr2.2 exon 60524359 60524484 60524359 ID=MS.gene003108.t1.exon5;Parent=MS.gene003108.t1
chr2.2 CDS 60524359 60524484 60524359 ID=cds.MS.gene003108.t1;Parent=MS.gene003108.t1
chr2.2 exon 60524192 60524267 60524192 ID=MS.gene003108.t1.exon6;Parent=MS.gene003108.t1
chr2.2 CDS 60524192 60524267 60524192 ID=cds.MS.gene003108.t1;Parent=MS.gene003108.t1
chr2.2 exon 60523784 60523844 60523784 ID=MS.gene003108.t1.exon7;Parent=MS.gene003108.t1
chr2.2 CDS 60523784 60523844 60523784 ID=cds.MS.gene003108.t1;Parent=MS.gene003108.t1
chr2.2 exon 60523646 60523704 60523646 ID=MS.gene003108.t1.exon8;Parent=MS.gene003108.t1
chr2.2 CDS 60523646 60523704 60523646 ID=cds.MS.gene003108.t1;Parent=MS.gene003108.t1
chr2.2 exon 60523449 60523556 60523449 ID=MS.gene003108.t1.exon9;Parent=MS.gene003108.t1
chr2.2 CDS 60523449 60523556 60523449 ID=cds.MS.gene003108.t1;Parent=MS.gene003108.t1
chr2.2 exon 60523106 60523328 60523106 ID=MS.gene003108.t1.exon10;Parent=MS.gene003108.t1
chr2.2 CDS 60523106 60523328 60523106 ID=cds.MS.gene003108.t1;Parent=MS.gene003108.t1
chr2.2 exon 60522768 60522978 60522768 ID=MS.gene003108.t1.exon11;Parent=MS.gene003108.t1
chr2.2 CDS 60522768 60522978 60522768 ID=cds.MS.gene003108.t1;Parent=MS.gene003108.t1
chr2.2 exon 60522419 60522664 60522419 ID=MS.gene003108.t1.exon12;Parent=MS.gene003108.t1
chr2.2 CDS 60522419 60522664 60522419 ID=cds.MS.gene003108.t1;Parent=MS.gene003108.t1
chr2.2 exon 60522130 60522324 60522130 ID=MS.gene003108.t1.exon13;Parent=MS.gene003108.t1
chr2.2 CDS 60522130 60522324 60522130 ID=cds.MS.gene003108.t1;Parent=MS.gene003108.t1
Gene Sequence

>MS.gene003108

ATGGGTCGTTCTCGTGGTAATTTTCATCATAACGATGATGATCCAAGCCAAAGGTTTGATTTTTATTCATCTTTTCTTATTATTGTAATTGGGTCATAATGTAATTGAATTTTGCACAATTTGTTTATCTAAATTTGATTGATCATAGATACAGTAAAATGCTGTGGTAATTTTGCTAAATGATGCTTTCAACTATATGTGTAGGTCAAGGAGAAAGAAGAATGCTGCAAGTGGAGATAATTCAGAATCTGGAGTTGCAGGTACTTTTTCAACTATCATGTACCATTGTACTTGGTTAATTGTATAATGCACTATGAAATTGTACTGTGTAACTGCACTATGGAGATATTGTTTCTAAAATTTAAATTTACTATGTTTACAAATCAAATAAAAAGTGAATAGATATAAGTATAATGAGAAATGTTGTATATTTCGAATGCGAAACACGTGGCCGAACACGGTGATTTCCATCCAAGTTAAAGTTTATATTTTTCCATCTTTAAATATTATTTATGTTGTTTAAAAACCAATTGCATGTCGCCACCTTTGCATTCATCGATTTTGTGTTGCTTGCTCTTCGTAAGGAGTAGCATAGCTCTTAGTATAATATATATTCGTACCATATAAGTCTTTAACTTTAGTGTATTATAAAATTAGCCTGTGTTTGTTTCCACGTTGGAATTGTCCACAATTTGTAGCTTAGAAATCATCACCGTGGAATGTGTGCCAGGATGCGAGAAAATTGTTGCTGACACGTTACCAGACAAGCACTTCATGTGTACATGTTCAGTGGAGTATATGTTTGTAGATGTTGTTTTACGCTTCACTTTGACAATTTGTAGCTTCGAAATTATCACCGTGGGAAGTGTCGGGATGCGAGAAACTGTAACCGTATGTTTGGATCGAAGTGTAGGTTTGAAACGGAAATCCAAACATCCCTTAAATTACATTGTCATCTACCGAATACAAAATTCTTAATATCTTTCCGTATAACTGAATAAGTTGATGTTGACAGTTGTAATGGCAGGCCTGTGGAGTGTTTGTTTGAATAAAGATAGTGAACCATTTTTCGCTAAAGAATGAAATATACTATAACAGTGATTGTTATTTAGAGCTTCAATTGTCTATTTATTGATTTATTTAAGATTCATTGATATTGTTGAATGTTTGATAATAATTTTCCTGGTTTTTTGTGAGTCAGGTCAAGGAGCAGGTGAAGCGAAAAGGGCTTTGTATCATTGCAATTACTGTAATAAAGATATTACAGGAAAAATCCGTATCAAGTGTGCCATGTGCCCAGATTTTGACTTATGTATTGAGTGCTTTTCTGTTGGGGCTGAGGTGACACCCCACAAAAGCAATCATTCTTACAGGGTCATGGTGAGTAACCATTACTTTCAAATGTTTTCCTTTGATGTCTTATTAAACATAACCTTTTGATCAATCGAAAGGTTATACAGTAATTATCCTGCTAGACTGCAGGTTGATCACTCTGAGTTTAATTACAGGATTAATCATTTAAGTTAGATTCGAAATTATCTGATACTGTTTTTTTTATCACGTTGAGTATAAATCATATTTAAAATAATTTATGTATCTGCCAAACCGCTGTTATGAAAATTGCATTACCACTAGTTTCGCCGACATTGTTGTTATCATTGCTTTGTTTCTCTATCTATAAGAGAAACTATTTGGAAAGATTTAGAGGTTAACGAGTTGGATCCAAATATGGTTTATGATAGAACATTATGGCGTAATTTGATCCATGTAGCTAACTCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTTGTATTGCTTTGTTTCTCTATATCAGTTTTTTAATACGGTTCCTTGTTGTCAGGATAATTTGTCTTTCCCTCTCATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGTACTTGGTTTAAATTAATTGCCTAGGAGTAGCGGTGAATTTAATATGATAATATGATAAAGCATTATATTTGGTGTTGAAGAAGAAATCTACTATTAATATCTGACTTTTCTAGCAACAAATTTTTGGTTTTAGGGAATAGAAATGTATGGCATGGGAAACTGGGCAGAAGTTGCTGAGCATGTTGGAACAAAGAACAAAGAAGCATGCATAGAACACTATAGGAATGTGTACTTAAACTCCCCGTTCTTCCCTCTTCCGGTATGTCAGGCTTTGAATGAAGCTGCAATCAGTGCTTATCATATTCGTTTATATAAAGGTATTTTAAATGCTGACCATTCTTATTTACTAGGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCGAAAGGGCAGGGTGAGGACAAGAAAGGTTTGTCTCAATACACAACATCACATTCATTAGTTTCTGTAGTTTTTGGGGAAAAAATGATTTCACTTACATAGCATACTGTTATAAATCAGGAATGTCTCATTTATCACTTCTTTTGGATAGATTTATATTGATATACTGTATCTCCAAACAATAAATAATAATGCCTCATTTATGTTGCTGATAACTGCTAAAATATGTTTCGGAGAATAAATTTATTATAATCTATGATTCTATGGCTTCTGATTTTTCGCTGATTGGTTGGTTTTTGTTTTGGTCACATTTTTATTTTATAAATATTGGTCACATTCTTCTTTATAAATACTGGTTACTTGTGATTGTAACAGGACTTCCCATGGGAGATCTTAGCATAAAGGAAGAATCACCCTTTTCTCCATCTAGAGTCAAGTAAGGCTGTCTTTTATTGTACGCATTAACTCTTTCCATGTTCAATACCATGTTGATTGACTTCTAAATGTTGATTCAGAATGGAAGATTCCAACAAATCTGGTTCCACTGGCCGTTTGACTTCTAATATGAATTCAGGTAAGCTAAATAAGTCAATAGCTAAGATGTATACAACAATTTCCCAATTATAATTTCCTTTCAATCTCTATATTGTTTATATATTGTAGGGTCAGATTCTGGGCCCTCAGTCAACACACATGCTGCAGCTAGTGCTAACCAAAAGGCATCCAATAAAGGGCGGGGGAAAGGTGGTCCTGGAATTGTTAAAATGGAAGGTGTGCATTTTATATTTGGTCATAAATCCCAATTGACATTACACAATGCTGATTCTTTGAGGAAATTCATCTCATGACTTTACATTCTGTATTTTATCCTAGTTCTTTTGTCATTGACAGATTCTCCAATGGACAGAGATTTTGGAGGAAATAAGCCAAATTCCTCAAGAAATGAAGGCCCTTCTTTGGTTGAAATCAGTGGTTATAACGCGAAAAGACAGGAATTCGATCCTGAATATGATAATGATGCTGAGCAATTACTCGCCGAAATGGAGTTTAAGGACACTGACACTGAGGAGGAGCGAGAGATCAAACTTCGTGTGCTGCGCATTTATTCAAAAAGGTAAACAACCATTTTAGTTTTATAGGTTTCTTTTCCTGAGTCATCCACACTCAAAATCATAAACAATAATGGTATTTGTTGCATAGTATTGCTCACGTTCCTATCTTTAAATTGAAAAACGTTGCAGGCTTGATGAAAGAAAGCGCAGGAAGGAATTCATACTTGAAAGAAATTTGCTTTATCCAAATCCATTTGAGAAGGATTTAACACCCGAGGAAAAGTCAATATGCCGGAAATATGACATGTTCATGCGCTTTCATACTAAGGAAGAGCACGATGAATTACTCAGAACCGTTATCTCTGAACATAGGACTCTGAAAAGAATTCAAGAGCTTAAGGTTTGAGACATGGATGCCATTAAATTCTTATCGACATTCCTTTTTTTTTCTCTACTTGGAAAATTGAACAGTCATCTCTGACATTTGTTGAACATGATCGCAGGAAGCTCGTGCTGCTGGTTGCCGCAGTTCAGTTGAAGCAGATAGATATCTGGCGCATAAGAGAAGAAAGGAATCTGAAGAAAGTGCTTGTAGAGCGAGAGAAAGTGCTCATGTGGTCCCGAACAATCACGGGGTTCCAAATGCATTAATGTCTCCAGACTCTGCTGGTACCAGACCTGCAGGGTCAAGTTCTGTCAATGAAATGGATGCAACTGGATACTATGGAGCAGATTTACTTTCTGAAGCTGTAAGAATAATTTTCTTCTGCCAAGTTTGCATTCTAAAACTGTACATTGCTTCTTATTTTGTTTTCTGAAACCATCGGCTGTAAATTCTGCCAGGAGAAACGTTTGTGCTGCGATTTAAGGTTGCCTCCAACCGTTTATCTGAAGATGCAAGAGGACCTATCTGTACAAATGATTGCTGGCAACGTCTCTTCAAAATCTGATGCTCATCAAATGTTCAAGAATGTGGATACCATCAAAATTGACAGGGTGTATGATATGCTCATTAAGAAGGGAATTGGTTCATCCTGA
Protein sequence

>MS.gene003108.t1

MGRSRGNFHHNDDDPSQRSRRKKNAASGDNSESGVAGQGAGEAKRALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHSYRVMDNLSFPLICPDWNADDEILLLEGIEMYGMGNWAEVAEHVGTKNKEACIEHYRNVYLNSPFFPLPDMSHVVGKNRKELLAMAKGQGEDKKGLPMGDLSIKEESPFSPSRVKMEDSNKSGSTGRLTSNMNSGSDSGPSVNTHAAASANQKASNKGRGKGGPGIVKMEDSPMDRDFGGNKPNSSRNEGPSLVEISGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDTEEEREIKLRVLRIYSKRLDERKRRKEFILERNLLYPNPFEKDLTPEEKSICRKYDMFMRFHTKEEHDELLRTVISEHRTLKRIQELKEARAAGCRSSVEADRYLAHKRRKESEESACRARESAHVVPNNHGVPNALMSPDSAGTRPAGSSSVNEMDATGYYGADLLSEAEKRLCCDLRLPPTVYLKMQEDLSVQMIAGNVSSKSDAHQMFKNVDTIKIDRVYDMLIKKGIGSS