AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003838

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003838.t1 MTR_4g068457 97.206 501 9 3 9 507 1 498 0.0 999
MS.gene003838.t1 MTR_1g021590 58.559 444 152 8 23 464 20 433 6.68e-176 503
MS.gene003838.t1 MTR_5g018520 50.858 466 184 8 2 467 4 424 3.06e-160 463
MS.gene003838.t1 MTR_3g078380 39.181 342 187 10 140 462 70 409 5.23e-74 240
MS.gene003838.t1 MTR_4g106480 37.901 343 191 6 137 462 59 396 1.80e-72 236
MS.gene003838.t1 MTR_5g035980 38.606 373 178 9 138 462 74 443 3.47e-72 236
MS.gene003838.t1 MTR_5g035980 22.400 375 215 14 35 364 99 442 4.51e-11 65.5
MS.gene003838.t1 MTR_3g110185 40.936 342 182 8 128 462 81 409 3.54e-72 245
MS.gene003838.t1 MTR_8g089650 37.500 360 204 8 115 463 80 429 2.84e-71 234
MS.gene003838.t1 MTR_2g060070 37.830 341 196 7 128 465 57 384 2.54e-70 230
MS.gene003838.t1 MTR_4g104410 39.640 333 186 8 137 462 39 363 7.98e-70 228
MS.gene003838.t1 MTR_2g101410 36.000 350 200 10 130 468 79 415 1.20e-62 211
MS.gene003838.t1 MTR_8g028700 25.723 311 195 13 120 407 214 511 3.09e-14 75.5
MS.gene003838.t1 MTR_8g032850 25.490 306 200 12 120 407 601 896 2.77e-13 73.2
MS.gene003838.t1 MTR_4g119620 25.877 228 133 9 244 460 119 321 1.87e-12 68.9
MS.gene003838.t1 MTR_8g104010 29.018 224 133 10 237 460 543 740 4.95e-12 68.9
MS.gene003838.t1 MTR_8g104010 29.018 224 133 10 237 460 906 1103 5.19e-12 69.3
MS.gene003838.t1 MTR_8g104010 29.018 224 133 10 237 460 626 823 5.66e-12 68.9
MS.gene003838.t1 MTR_6g465150 27.027 222 133 8 244 464 149 342 2.05e-11 66.2
MS.gene003838.t1 MTR_7g086360 25.877 228 135 9 244 460 97 301 7.88e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003838.t1 AT1G49450 53.347 493 172 10 9 466 1 470 2.44e-176 504
MS.gene003838.t1 AT3G18950 54.583 480 184 10 9 466 1 468 1.37e-175 503
MS.gene003838.t1 AT2G26490 57.978 445 156 9 21 464 6 420 5.85e-173 496
MS.gene003838.t1 AT4G34380 53.693 501 168 12 1 472 1 466 3.67e-168 484
MS.gene003838.t1 AT3G50390 57.035 398 159 7 78 469 40 431 2.70e-156 453
MS.gene003838.t1 AT1G47610 62.356 348 122 6 121 465 10 351 3.26e-145 421
MS.gene003838.t1 AT1G24130 42.340 359 177 8 128 463 62 413 1.76e-81 259
MS.gene003838.t1 AT5G50120 37.047 386 214 10 104 462 1 384 1.21e-77 249
MS.gene003838.t1 AT3G51930 39.489 352 191 9 128 465 54 397 2.41e-73 238
MS.gene003838.t1 AT1G24530 39.466 337 185 7 138 468 86 409 4.55e-73 238
MS.gene003838.t1 AT3G49660 26.522 230 131 9 242 460 110 312 1.90e-14 74.7

Find 127 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAGAAAAGCACCAAATTT+TGG 0.233924 4.2:-38128178 None:intergenic
CTGATGGATTGGTAAACTTC+TGG 0.236679 4.2:+38129169 MS.gene003838:CDS
TTTATTGGTGCTATTATTAT+TGG 0.250187 4.2:-38128146 None:intergenic
CTGTCGCCGAAATATGTTCT+AGG 0.279505 4.2:-38128277 None:intergenic
TTGCTGACATTGATTGTTCC+TGG 0.283768 4.2:-38129573 None:intergenic
GAAGAAAACGAAGCATGTTT+TGG 0.284274 4.2:+38129065 MS.gene003838:CDS
GATAGTTTATACTGGTAGTT+TGG 0.292066 4.2:+38129440 MS.gene003838:CDS
ATCTACTCCTTAGCCGTTTC+CGG 0.295728 4.2:+38128514 MS.gene003838:CDS
GACAGCTATTTCCCGGAAAA+TGG 0.300025 4.2:+38128457 MS.gene003838:CDS
AAAATACATAGACCAAAATT+TGG 0.308587 4.2:+38128166 MS.gene003838:CDS
CGGACTTCTACGTAGTTCTT+TGG 0.319774 4.2:-38128781 None:intergenic
GGCGGTGGCTGTGGTGGTAT+TGG 0.328170 4.2:-38128417 None:intergenic
CATGGAGATAACATGTAATT+AGG 0.330276 4.2:-38128322 None:intergenic
AATTCTCCAATTGCACCTAT+TGG 0.339564 4.2:+38129528 MS.gene003838:CDS
TGAGAGGAGAAGAAGTTTCT+TGG 0.355008 4.2:-38128348 None:intergenic
GGGATAAAACTCTCAAAGTT+TGG 0.381674 4.2:+38128896 MS.gene003838:CDS
CACTGTTCCATCGGCTGAGC+CGG 0.383779 4.2:-38129010 None:intergenic
TGCTGTTTCGAGTCTGAGTT+TGG 0.386320 4.2:+38128840 MS.gene003838:CDS
TAATTCAATCCTTTGCCAAT+AGG 0.387828 4.2:-38129543 None:intergenic
GTCCTATGTCTCGCTGCGGC+AGG 0.400293 4.2:+38129252 MS.gene003838:CDS
TGATGGATTGGTAAACTTCT+GGG 0.400345 4.2:+38129170 MS.gene003838:CDS
TCTCAAAGTTTGGCGCGTTA+CGG 0.407654 4.2:+38128906 MS.gene003838:CDS
ACCACTGCTTGATTTAAAAC+CGG 0.411447 4.2:-38128602 None:intergenic
CCTTTGCCAATAGGTGCAAT+TGG 0.413227 4.2:-38129534 None:intergenic
CGTTACGGATTTCAAGTGTA+TGG 0.422165 4.2:+38128921 MS.gene003838:CDS
TCTAGAAATCATAAGCGTAT+TGG 0.424001 4.2:+38128715 MS.gene003838:CDS
CTGAACATGCGCCAGAGTTA+AGG 0.425735 4.2:+38129490 MS.gene003838:CDS
TCAGCAACAATAGTAATAGA+AGG 0.431187 4.2:+38129589 MS.gene003838:CDS
GGAGAGACATCGACGGAAAA+GGG 0.432076 4.2:+38129043 MS.gene003838:CDS
GCCTTGATCATCGTCATTGT+TGG 0.434698 4.2:-38128227 None:intergenic
GCGAGTCCTAGAACATATTT+CGG 0.439823 4.2:+38128271 MS.gene003838:CDS
TAGTTTGGATAAGTCTGTTA+AGG 0.440081 4.2:+38129455 MS.gene003838:CDS
TTATAACGACAGCTATTTCC+CGG 0.443220 4.2:+38128450 MS.gene003838:CDS
GTATAACATGTCACCGGAAA+CGG 0.443548 4.2:-38128527 None:intergenic
CCACACGCAAACATTCTTAT+CGG 0.444510 4.2:-38129298 None:intergenic
TTGACATAGTCTTTGAAAGT+TGG 0.447390 4.2:-38128745 None:intergenic
CATTGAATGACAAACACAAA+AGG 0.448171 4.2:+38128097 None:intergenic
TGCTGACATTGATTGTTCCT+GGG 0.450251 4.2:-38129572 None:intergenic
ATTTATTGCGGTTCTTCTGA+TGG 0.451965 4.2:+38129153 MS.gene003838:CDS
TTGCGGTTCTTCTGATGGAT+TGG 0.452181 4.2:+38129158 MS.gene003838:CDS
TTCCCGGAAAATGGCCTCAT+CGG 0.452524 4.2:+38128466 MS.gene003838:CDS
ACCGGTGAAGATGTTTCCTT+CGG 0.460672 4.2:-38128647 None:intergenic
AGGAGAGACATCGACGGAAA+AGG 0.464125 4.2:+38129042 MS.gene003838:CDS
CGGCCGAGGCGTTGCTGATA+CGG 0.468033 4.2:-38128249 None:intergenic
CAACGGTGGATAGTTTATAC+TGG 0.469758 4.2:+38129432 MS.gene003838:CDS
GAAGAAGTTTCTTGGTTCCA+TGG 0.473762 4.2:-38128340 None:intergenic
TTCAACGGCAATGCATTTGA+CGG 0.476271 4.2:-38129379 None:intergenic
AATCGTTGATGAATGGTTAA+CGG 0.476756 4.2:-38129130 None:intergenic
TCCCGGAAAATGGCCTCATC+GGG 0.480547 4.2:+38128467 MS.gene003838:CDS
AATAAATAATCGTTGATGAA+TGG 0.482054 4.2:-38129137 None:intergenic
TCAACGGCAATGCATTTGAC+GGG 0.487757 4.2:-38129378 None:intergenic
TGGATAAGTCTGTTAAGGTC+TGG 0.488240 4.2:+38129460 MS.gene003838:CDS
TGTGGAGGCGCGACGAGAGA+GGG 0.489403 4.2:+38129316 MS.gene003838:CDS
TGTTGTCGTGGCGGTGGCTG+TGG 0.492689 4.2:-38128426 None:intergenic
AGGTTGATTGCTTCTGATGA+TGG 0.495947 4.2:-38128391 None:intergenic
GGTTGTTGTACTCAGGTTCG+TGG 0.503075 4.2:+38128875 MS.gene003838:CDS
ACCAGTGTGTCCCGTCAAAA+CGG 0.506792 4.2:-38129355 None:intergenic
TATAATTGTTGTCGTGGCGG+TGG 0.508719 4.2:-38128432 None:intergenic
GGCTGTGGTGGTATTGGAAG+AGG 0.508925 4.2:-38128411 None:intergenic
AAAGAACTTAAAGATTATAC+CGG 0.508943 4.2:+38128583 MS.gene003838:CDS
CCAATTGCACCTATTGGCAA+AGG 0.511651 4.2:+38129534 MS.gene003838:CDS
ATCTTCACCGGTCACCAAGA+TGG 0.520474 4.2:+38128658 MS.gene003838:CDS
GGTGTGAAATAACGAGGGTT+CGG 0.520624 4.2:-38128203 None:intergenic
CCACATCTTCACTGTTCCAT+CGG 0.523320 4.2:-38129019 None:intergenic
AACCATGGTGATTTGTTGAG+AGG 0.523351 4.2:-38128364 None:intergenic
TGTTCTAGGACTCGCGGCCG+AGG 0.526893 4.2:-38128263 None:intergenic
GGTGTTTCTCTCTACTAACA+TGG 0.528485 4.2:-38128125 None:intergenic
CTCCTCCTCGTGTTCTTCAA+CGG 0.530483 4.2:-38129394 None:intergenic
GGATTGAATTATTCTTCCCC+AGG 0.531004 4.2:+38129555 MS.gene003838:CDS
CAAAGAACTACGTAGAAGTC+CGG 0.531424 4.2:+38128782 MS.gene003838:CDS
AGGATGATCGCGATGATCAA+CGG 0.538331 4.2:+38129415 MS.gene003838:CDS
CGTTGAAGAACACGAGGAGG+AGG 0.539002 4.2:+38129395 MS.gene003838:CDS
CTAATTACATGTTATCTCCA+TGG 0.539785 4.2:+38128323 MS.gene003838:CDS
AGTTAAGGTTGATGCAAGGT+TGG 0.541351 4.2:+38129505 MS.gene003838:CDS
GGGTCACTAGCTCGCGAAGA+AGG 0.547475 4.2:+38128487 MS.gene003838:CDS
GTGTGGAGGCGCGACGAGAG+AGG 0.551170 4.2:+38129315 MS.gene003838:CDS
CATGTCACCGGAAACGGCTA+AGG 0.551651 4.2:-38128521 None:intergenic
GAAGGAGGGTTGTTGTACTC+AGG 0.553403 4.2:+38128868 MS.gene003838:CDS
TCCTATGTCTCGCTGCGGCA+GGG 0.558041 4.2:+38129253 MS.gene003838:CDS
TCACCGTGTTTCTACGTCGC+CGG 0.558845 4.2:-38128801 None:intergenic
AAAACCATTGTTATCTCCGA+AGG 0.559695 4.2:+38128631 MS.gene003838:CDS
TTGATCATCGTCATTGTTGG+TGG 0.562709 4.2:-38128224 None:intergenic
ACCAACAATGACGATGATCA+AGG 0.573039 4.2:+38128226 MS.gene003838:CDS
TCCCTGCCGCAGCGAGACAT+AGG 0.573219 4.2:-38129254 None:intergenic
ATAAGAATGTTTGCGTGTGG+AGG 0.574109 4.2:+38129301 MS.gene003838:CDS
CTGAGTTTGGATCAAGAAGG+AGG 0.576458 4.2:+38128853 MS.gene003838:CDS
TCCGAAGGAAACATCTTCAC+CGG 0.578285 4.2:+38128646 MS.gene003838:CDS
CCTTGCATCAACCTTAACTC+TGG 0.578888 4.2:-38129501 None:intergenic
AGGCCGTATCAGCAACGCCT+CGG 0.581907 4.2:+38128246 MS.gene003838:CDS
GTTGTTGTACTCAGGTTCGT+GGG 0.586838 4.2:+38128876 MS.gene003838:CDS
GGTTTGAAATGCTGCAACCA+CGG 0.587053 4.2:-38128977 None:intergenic
TGAATGACAAACACAAAAGG+TGG 0.588072 4.2:+38128100 None:intergenic
TGTCGTTATAATTGTTGTCG+TGG 0.588164 4.2:-38128438 None:intergenic
TCATCAACGATTATTTATTG+CGG 0.596640 4.2:+38129141 MS.gene003838:CDS
CCGATGGAACAGTGAAGATG+TGG 0.598551 4.2:+38129019 MS.gene003838:CDS
GCTGACATTGATTGTTCCTG+GGG 0.599863 4.2:-38129571 None:intergenic
GAAACAAGAAAACGCTGTGA+CGG 0.601740 4.2:+38129101 MS.gene003838:CDS
TGTCGTGGCGGTGGCTGTGG+TGG 0.601834 4.2:-38128423 None:intergenic
CCGATAAGAATGTTTGCGTG+TGG 0.609682 4.2:+38129298 MS.gene003838:CDS
TTAAAACACCGCCGTGAGTG+AGG 0.611554 4.2:-38129212 None:intergenic
GTGGAGGCGCGACGAGAGAG+GGG 0.620789 4.2:+38129317 MS.gene003838:CDS
TGAGTTTGGATCAAGAAGGA+GGG 0.624574 4.2:+38128854 MS.gene003838:CDS
ACCGGTGTATAACATGTCAC+CGG 0.625134 4.2:-38128533 None:intergenic
ATGGAACAGTGAAGATGTGG+AGG 0.633593 4.2:+38129022 MS.gene003838:CDS
GTTTCCTTCGGAGATAACAA+TGG 0.634476 4.2:-38128635 None:intergenic
TCCGGTGACATGTTATACAC+CGG 0.639848 4.2:+38128532 MS.gene003838:CDS
CAGAAGAATAACCTCACTCA+CGG 0.641267 4.2:+38129201 MS.gene003838:CDS
CCAGAGTTAAGGTTGATGCA+AGG 0.650036 4.2:+38129501 MS.gene003838:CDS
CGCAGTCCTATGTCTCGCTG+CGG 0.655777 4.2:+38129248 MS.gene003838:CDS
AGTCTGAGTTTGGATCAAGA+AGG 0.656181 4.2:+38128850 MS.gene003838:CDS
GCGACGTAGAAACACGGTGA+AGG 0.656210 4.2:+38128804 MS.gene003838:CDS
CGCGAGCTAGTGACCCGATG+AGG 0.657515 4.2:-38128480 None:intergenic
CACGCAAACATTCTTATCGG+CGG 0.663813 4.2:-38129295 None:intergenic
CATTGCCGTTGAAGAACACG+AGG 0.665220 4.2:+38129389 MS.gene003838:CDS
TGCCGTTGAAGAACACGAGG+AGG 0.667001 4.2:+38129392 MS.gene003838:CDS
GAAATATGTTCTAGGACTCG+CGG 0.670435 4.2:-38128269 None:intergenic
ATGTGGAGGAGAGACATCGA+CGG 0.680232 4.2:+38129036 MS.gene003838:CDS
CTCCTCTCAACAAATCACCA+TGG 0.687284 4.2:+38128362 MS.gene003838:CDS
CGTTATAATTGTTGTCGTGG+CGG 0.693088 4.2:-38128435 None:intergenic
TCTGATGATGGCATTAACCA+TGG 0.701204 4.2:-38128379 None:intergenic
AGTCCGGCGACGTAGAAACA+CGG 0.702669 4.2:+38128798 MS.gene003838:CDS
ATGATCGCGATGATCAACGG+TGG 0.708309 4.2:+38129418 MS.gene003838:CDS
GTTGGTGGTGTGAAATAACG+AGG 0.715945 4.2:-38128209 None:intergenic
GGCTGAGCCGGTGAAAACGT+AGG 0.729585 4.2:-38128998 None:intergenic
TGATGACGCAGTGAACGCCG+TGG 0.743023 4.2:+38128960 MS.gene003838:CDS
AAGAATAACCTCACTCACGG+CGG 0.746398 4.2:+38129204 MS.gene003838:CDS
TTGGTGGTGTGAAATAACGA+GGG 0.751644 4.2:-38128208 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATACATAGACCAAAATT+TGG + chr4.2:38128166-38128185 MS.gene003838:CDS 20.0%
!! AAAGAACTTAAAGATTATAC+CGG + chr4.2:38128583-38128602 MS.gene003838:CDS 20.0%
!!! AATAAATAATCGTTGATGAA+TGG - chr4.2:38129140-38129159 None:intergenic 20.0%
!!! TTTATTGGTGCTATTATTAT+TGG - chr4.2:38128149-38128168 None:intergenic 20.0%
!!! TTTTGGTCTATGTATTTTAT+TGG - chr4.2:38128164-38128183 None:intergenic 20.0%
! TACCGATAGCAAAAATATAA+GGG + chr4.2:38128555-38128574 MS.gene003838:CDS 25.0%
! TCATCAACGATTATTTATTG+CGG + chr4.2:38129141-38129160 MS.gene003838:CDS 25.0%
!! TTGAAGAAATTTTCCAAACT+CGG - chr4.2:38128690-38128709 None:intergenic 25.0%
ATAGCAAAAATATAAGGGTG+TGG + chr4.2:38128560-38128579 MS.gene003838:CDS 30.0%
CATGGAGATAACATGTAATT+AGG - chr4.2:38128325-38128344 None:intergenic 30.0%
CTAATTACATGTTATCTCCA+TGG + chr4.2:38128323-38128342 MS.gene003838:CDS 30.0%
GATAGTTTATACTGGTAGTT+TGG + chr4.2:38129440-38129459 MS.gene003838:CDS 30.0%
TAATTCAATCCTTTGCCAAT+AGG - chr4.2:38129546-38129565 None:intergenic 30.0%
TAGTTTGGATAAGTCTGTTA+AGG + chr4.2:38129455-38129474 MS.gene003838:CDS 30.0%
TCAGCAACAATAGTAATAGA+AGG + chr4.2:38129589-38129608 MS.gene003838:CDS 30.0%
TCTAGAAATCATAAGCGTAT+TGG + chr4.2:38128715-38128734 MS.gene003838:CDS 30.0%
! AATCGTTGATGAATGGTTAA+CGG - chr4.2:38129133-38129152 None:intergenic 30.0%
! GTACCGATAGCAAAAATATA+AGG + chr4.2:38128554-38128573 MS.gene003838:CDS 30.0%
! TTGACATAGTCTTTGAAAGT+TGG - chr4.2:38128748-38128767 None:intergenic 30.0%
! TTTTAAATCAAGCAGTGGTT+TGG + chr4.2:38128606-38128625 MS.gene003838:CDS 30.0%
!! CACCCTTATATTTTTGCTAT+CGG - chr4.2:38128560-38128579 None:intergenic 30.0%
!! TATATTTTTGCTATCGGTAC+CGG - chr4.2:38128554-38128573 None:intergenic 30.0%
!!! TGTAGAAAAGCACCAAATTT+TGG - chr4.2:38128181-38128200 None:intergenic 30.0%
AAAACCATTGTTATCTCCGA+AGG + chr4.2:38128631-38128650 MS.gene003838:CDS 35.0%
AAGATGGAAAAATCCGAGTT+TGG + chr4.2:38128674-38128693 MS.gene003838:CDS 35.0%
AATTCTCCAATTGCACCTAT+TGG + chr4.2:38129528-38129547 MS.gene003838:CDS 35.0%
ATTTATTGCGGTTCTTCTGA+TGG + chr4.2:38129153-38129172 MS.gene003838:CDS 35.0%
GGGATAAAACTCTCAAAGTT+TGG + chr4.2:38128896-38128915 MS.gene003838:CDS 35.0%
TGTCGTTATAATTGTTGTCG+TGG - chr4.2:38128441-38128460 None:intergenic 35.0%
! AAACTCGGATTTTTCCATCT+TGG - chr4.2:38128675-38128694 None:intergenic 35.0%
! ACCACTGCTTGATTTAAAAC+CGG - chr4.2:38128605-38128624 None:intergenic 35.0%
! CATTTGTCTTTCCGTTTTGA+CGG + chr4.2:38129344-38129363 MS.gene003838:CDS 35.0%
! GAAGAAAACGAAGCATGTTT+TGG + chr4.2:38129065-38129084 MS.gene003838:CDS 35.0%
! TTATAACGACAGCTATTTCC+CGG + chr4.2:38128450-38128469 MS.gene003838:CDS 35.0%
! TTTCAAACCTACGTTTTCAC+CGG + chr4.2:38128991-38129010 MS.gene003838:CDS 35.0%
!! AAACGAAGCATGTTTTGGAT+AGG + chr4.2:38129070-38129089 MS.gene003838:CDS 35.0%
!! ATTTGTCTTTCCGTTTTGAC+GGG + chr4.2:38129345-38129364 MS.gene003838:CDS 35.0%
!! TGATGGATTGGTAAACTTCT+GGG + chr4.2:38129170-38129189 MS.gene003838:CDS 35.0%
ACCAACAATGACGATGATCA+AGG + chr4.2:38128226-38128245 MS.gene003838:CDS 40.0%
AGTCTGAGTTTGGATCAAGA+AGG + chr4.2:38128850-38128869 MS.gene003838:CDS 40.0%
ATAAGAATGTTTGCGTGTGG+AGG + chr4.2:38129301-38129320 MS.gene003838:CDS 40.0%
CAAAGAACTACGTAGAAGTC+CGG + chr4.2:38128782-38128801 MS.gene003838:CDS 40.0%
CAACGGTGGATAGTTTATAC+TGG + chr4.2:38129432-38129451 MS.gene003838:CDS 40.0%
CAGAAGAATAACCTCACTCA+CGG + chr4.2:38129201-38129220 MS.gene003838:CDS 40.0%
CCACACGCAAACATTCTTAT+CGG - chr4.2:38129301-38129320 None:intergenic 40.0%
CGTTATAATTGTTGTCGTGG+CGG - chr4.2:38128438-38128457 None:intergenic 40.0%
GAAACAAGAAAACGCTGTGA+CGG + chr4.2:38129101-38129120 MS.gene003838:CDS 40.0%
GAAGAAGTTTCTTGGTTCCA+TGG - chr4.2:38128343-38128362 None:intergenic 40.0%
GCGAGTCCTAGAACATATTT+CGG + chr4.2:38128271-38128290 MS.gene003838:CDS 40.0%
GGATTGAATTATTCTTCCCC+AGG + chr4.2:38129555-38129574 MS.gene003838:CDS 40.0%
GGTGTTTCTCTCTACTAACA+TGG - chr4.2:38128128-38128147 None:intergenic 40.0%
GTATAACATGTCACCGGAAA+CGG - chr4.2:38128530-38128549 None:intergenic 40.0%
GTTTCCTTCGGAGATAACAA+TGG - chr4.2:38128638-38128657 None:intergenic 40.0%
TGAGAGGAGAAGAAGTTTCT+TGG - chr4.2:38128351-38128370 None:intergenic 40.0%
TGAGTTTGGATCAAGAAGGA+GGG + chr4.2:38128854-38128873 MS.gene003838:CDS 40.0%
TGGATAAGTCTGTTAAGGTC+TGG + chr4.2:38129460-38129479 MS.gene003838:CDS 40.0%
TTCAACGGCAATGCATTTGA+CGG - chr4.2:38129382-38129401 None:intergenic 40.0%
TTGATCATCGTCATTGTTGG+TGG - chr4.2:38128227-38128246 None:intergenic 40.0%
! AGGTTGATTGCTTCTGATGA+TGG - chr4.2:38128394-38128413 None:intergenic 40.0%
! CGTTACGGATTTCAAGTGTA+TGG + chr4.2:38128921-38128940 MS.gene003838:CDS 40.0%
! TGCTGACATTGATTGTTCCT+GGG - chr4.2:38129575-38129594 None:intergenic 40.0%
! TTGCTGACATTGATTGTTCC+TGG - chr4.2:38129576-38129595 None:intergenic 40.0%
!! AACCATGGTGATTTGTTGAG+AGG - chr4.2:38128367-38128386 None:intergenic 40.0%
!! AGTTAAGGTTGATGCAAGGT+TGG + chr4.2:38129505-38129524 MS.gene003838:CDS 40.0%
!! CTGATGGATTGGTAAACTTC+TGG + chr4.2:38129169-38129188 MS.gene003838:CDS 40.0%
!! GAAATATGTTCTAGGACTCG+CGG - chr4.2:38128272-38128291 None:intergenic 40.0%
!! GATTTTTCCATCTTGGTGAC+CGG - chr4.2:38128668-38128687 None:intergenic 40.0%
!! TCTGATGATGGCATTAACCA+TGG - chr4.2:38128382-38128401 None:intergenic 40.0%
!! TTGGTGGTGTGAAATAACGA+GGG - chr4.2:38128211-38128230 None:intergenic 40.0%
!!! ACCGGTTTTAAATCAAGCAG+TGG + chr4.2:38128601-38128620 MS.gene003838:CDS 40.0%
AAGAATAACCTCACTCACGG+CGG + chr4.2:38129204-38129223 MS.gene003838:CDS 45.0%
ACCGGTGAAGATGTTTCCTT+CGG - chr4.2:38128650-38128669 None:intergenic 45.0%
ACCGGTGTATAACATGTCAC+CGG - chr4.2:38128536-38128555 None:intergenic 45.0%
AGGATGATCGCGATGATCAA+CGG + chr4.2:38129415-38129434 MS.gene003838:CDS 45.0%
ATCTACTCCTTAGCCGTTTC+CGG + chr4.2:38128514-38128533 MS.gene003838:CDS 45.0%
ATGGAACAGTGAAGATGTGG+AGG + chr4.2:38129022-38129041 MS.gene003838:CDS 45.0%
CACGCAAACATTCTTATCGG+CGG - chr4.2:38129298-38129317 None:intergenic 45.0%
CCAATTGCACCTATTGGCAA+AGG + chr4.2:38129534-38129553 MS.gene003838:CDS 45.0%
CCACATCTTCACTGTTCCAT+CGG - chr4.2:38129022-38129041 None:intergenic 45.0%
CCGATAAGAATGTTTGCGTG+TGG + chr4.2:38129298-38129317 MS.gene003838:CDS 45.0%
CCTTGCATCAACCTTAACTC+TGG - chr4.2:38129504-38129523 None:intergenic 45.0%
CCTTTGCCAATAGGTGCAAT+TGG - chr4.2:38129537-38129556 None:intergenic 45.0%
CGGACTTCTACGTAGTTCTT+TGG - chr4.2:38128784-38128803 None:intergenic 45.0%
CTCCTCTCAACAAATCACCA+TGG + chr4.2:38128362-38128381 MS.gene003838:CDS 45.0%
CTGAGTTTGGATCAAGAAGG+AGG + chr4.2:38128853-38128872 MS.gene003838:CDS 45.0%
CTGTCGCCGAAATATGTTCT+AGG - chr4.2:38128280-38128299 None:intergenic 45.0%
GCCTTGATCATCGTCATTGT+TGG - chr4.2:38128230-38128249 None:intergenic 45.0%
GGTGTGAAATAACGAGGGTT+CGG - chr4.2:38128206-38128225 None:intergenic 45.0%
GTTGTTGTACTCAGGTTCGT+GGG + chr4.2:38128876-38128895 MS.gene003838:CDS 45.0%
TATAATTGTTGTCGTGGCGG+TGG - chr4.2:38128435-38128454 None:intergenic 45.0%
TCAACGGCAATGCATTTGAC+GGG - chr4.2:38129381-38129400 None:intergenic 45.0%
TCCGAAGGAAACATCTTCAC+CGG + chr4.2:38128646-38128665 MS.gene003838:CDS 45.0%
TCCGGTGACATGTTATACAC+CGG + chr4.2:38128532-38128551 MS.gene003838:CDS 45.0%
TCTCAAAGTTTGGCGCGTTA+CGG + chr4.2:38128906-38128925 MS.gene003838:CDS 45.0%
! GACAGCTATTTCCCGGAAAA+TGG + chr4.2:38128457-38128476 MS.gene003838:CDS 45.0%
! GCTGACATTGATTGTTCCTG+GGG - chr4.2:38129574-38129593 None:intergenic 45.0%
! GGTTTGAAATGCTGCAACCA+CGG - chr4.2:38128980-38128999 None:intergenic 45.0%
! TTGCGGTTCTTCTGATGGAT+TGG + chr4.2:38129158-38129177 MS.gene003838:CDS 45.0%
!! ACTCACGGCGGTGTTTTAAA+GGG + chr4.2:38129216-38129235 MS.gene003838:CDS 45.0%
!! CCAGAGTTAAGGTTGATGCA+AGG + chr4.2:38129501-38129520 MS.gene003838:CDS 45.0%
!! GTTGGTGGTGTGAAATAACG+AGG - chr4.2:38128212-38128231 None:intergenic 45.0%
!! TGCTGTTTCGAGTCTGAGTT+TGG + chr4.2:38128840-38128859 MS.gene003838:CDS 45.0%
!!! GCAGGGAATCTTGTTTTCAG+TGG + chr4.2:38129270-38129289 MS.gene003838:CDS 45.0%
ACCAGTGTGTCCCGTCAAAA+CGG - chr4.2:38129358-38129377 None:intergenic 50.0%
AGGAGAGACATCGACGGAAA+AGG + chr4.2:38129042-38129061 MS.gene003838:CDS 50.0%
ATCTTCACCGGTCACCAAGA+TGG + chr4.2:38128658-38128677 MS.gene003838:CDS 50.0%
ATGATCGCGATGATCAACGG+TGG + chr4.2:38129418-38129437 MS.gene003838:CDS 50.0%
ATGTGGAGGAGAGACATCGA+CGG + chr4.2:38129036-38129055 MS.gene003838:CDS 50.0%
CATTGCCGTTGAAGAACACG+AGG + chr4.2:38129389-38129408 MS.gene003838:CDS 50.0%
CCGATGGAACAGTGAAGATG+TGG + chr4.2:38129019-38129038 MS.gene003838:CDS 50.0%
CTCCTCCTCGTGTTCTTCAA+CGG - chr4.2:38129397-38129416 None:intergenic 50.0%
CTGAACATGCGCCAGAGTTA+AGG + chr4.2:38129490-38129509 MS.gene003838:CDS 50.0%
GAAGGAGGGTTGTTGTACTC+AGG + chr4.2:38128868-38128887 MS.gene003838:CDS 50.0%
GGAGAGACATCGACGGAAAA+GGG + chr4.2:38129043-38129062 MS.gene003838:CDS 50.0%
GGTTGTTGTACTCAGGTTCG+TGG + chr4.2:38128875-38128894 MS.gene003838:CDS 50.0%
TTAAAACACCGCCGTGAGTG+AGG - chr4.2:38129215-38129234 None:intergenic 50.0%
TTCCCGGAAAATGGCCTCAT+CGG + chr4.2:38128466-38128485 MS.gene003838:CDS 50.0%
!! CACTCACGGCGGTGTTTTAA+AGG + chr4.2:38129215-38129234 MS.gene003838:CDS 50.0%
AGTCCGGCGACGTAGAAACA+CGG + chr4.2:38128798-38128817 MS.gene003838:CDS 55.0%
CATGTCACCGGAAACGGCTA+AGG - chr4.2:38128524-38128543 None:intergenic 55.0%
CGTTGAAGAACACGAGGAGG+AGG + chr4.2:38129395-38129414 MS.gene003838:CDS 55.0%
GCGACGTAGAAACACGGTGA+AGG + chr4.2:38128804-38128823 MS.gene003838:CDS 55.0%
TCCCGGAAAATGGCCTCATC+GGG + chr4.2:38128467-38128486 MS.gene003838:CDS 55.0%
TGCCGTTGAAGAACACGAGG+AGG + chr4.2:38129392-38129411 MS.gene003838:CDS 55.0%
! GGCTGTGGTGGTATTGGAAG+AGG - chr4.2:38128414-38128433 None:intergenic 55.0%
! TCACCGTGTTTCTACGTCGC+CGG - chr4.2:38128804-38128823 None:intergenic 55.0%
!! ACCCGATGAGGCCATTTTCC+GGG - chr4.2:38128471-38128490 None:intergenic 55.0%
!! GACCCGATGAGGCCATTTTC+CGG - chr4.2:38128472-38128491 None:intergenic 55.0%
!! TCCGTTTTGACGGGACACAC+TGG + chr4.2:38129354-38129373 MS.gene003838:CDS 55.0%
AGGCCGTATCAGCAACGCCT+CGG + chr4.2:38128246-38128265 MS.gene003838:CDS 60.0%
CGCAGTCCTATGTCTCGCTG+CGG + chr4.2:38129248-38129267 MS.gene003838:CDS 60.0%
GGCTGAGCCGGTGAAAACGT+AGG - chr4.2:38129001-38129020 None:intergenic 60.0%
GGGTCACTAGCTCGCGAAGA+AGG + chr4.2:38128487-38128506 MS.gene003838:CDS 60.0%
TCCTATGTCTCGCTGCGGCA+GGG + chr4.2:38129253-38129272 MS.gene003838:CDS 60.0%
! CACTGTTCCATCGGCTGAGC+CGG - chr4.2:38129013-38129032 None:intergenic 60.0%
! TGATGACGCAGTGAACGCCG+TGG + chr4.2:38128960-38128979 MS.gene003838:CDS 60.0%
!!! GTTTTCACCGGCTCAGCCGA+TGG + chr4.2:38129003-38129022 MS.gene003838:CDS 60.0%
CGCGAGCTAGTGACCCGATG+AGG - chr4.2:38128483-38128502 None:intergenic 65.0%
GGCGGTGGCTGTGGTGGTAT+TGG - chr4.2:38128420-38128439 None:intergenic 65.0%
GTCCTATGTCTCGCTGCGGC+AGG + chr4.2:38129252-38129271 MS.gene003838:CDS 65.0%
TCCCTGCCGCAGCGAGACAT+AGG - chr4.2:38129257-38129276 None:intergenic 65.0%
TGTTGTCGTGGCGGTGGCTG+TGG - chr4.2:38128429-38128448 None:intergenic 65.0%
! TGTGGAGGCGCGACGAGAGA+GGG + chr4.2:38129316-38129335 MS.gene003838:CDS 65.0%
!! CGGCCGAGGCGTTGCTGATA+CGG - chr4.2:38128252-38128271 None:intergenic 65.0%
!! TGTTCTAGGACTCGCGGCCG+AGG - chr4.2:38128266-38128285 None:intergenic 65.0%
TGTCGTGGCGGTGGCTGTGG+TGG - chr4.2:38128426-38128445 None:intergenic 70.0%
! GTGGAGGCGCGACGAGAGAG+GGG + chr4.2:38129317-38129336 MS.gene003838:CDS 70.0%
! GTGTGGAGGCGCGACGAGAG+AGG + chr4.2:38129315-38129334 MS.gene003838:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 38128103 38129626 38128103 ID=MS.gene003838
chr4.2 mRNA 38128103 38129626 38128103 ID=MS.gene003838.t1;Parent=MS.gene003838
chr4.2 exon 38128103 38129626 38128103 ID=MS.gene003838.t1.exon1;Parent=MS.gene003838.t1
chr4.2 CDS 38128103 38129626 38128103 ID=cds.MS.gene003838.t1;Parent=MS.gene003838.t1
Gene Sequence

>MS.gene003838

ATGACAAACACAAAAGGTGGAACCATGTTAGTAGAGAGAAACACCAATAATAATAGCACCAATAAAATACATAGACCAAAATTTGGTGCTTTTCTACACTCCGAACCCTCGTTATTTCACACCACCAACAATGACGATGATCAAGGCCGTATCAGCAACGCCTCGGCCGCGAGTCCTAGAACATATTTCGGCGACAGCAGCAGCAGTAATAATGCTTCTCCTAATTACATGTTATCTCCATGGAACCAAGAAACTTCTTCTCCTCTCAACAAATCACCATGGTTAATGCCATCATCAGAAGCAATCAACCTCTTCCAATACCACCACAGCCACCGCCACGACAACAATTATAACGACAGCTATTTCCCGGAAAATGGCCTCATCGGGTCACTAGCTCGCGAAGAAGGTCACATCTACTCCTTAGCCGTTTCCGGTGACATGTTATACACCGGTACCGATAGCAAAAATATAAGGGTGTGGAAAGAACTTAAAGATTATACCGGTTTTAAATCAAGCAGTGGTTTGGTCAAAACCATTGTTATCTCCGAAGGAAACATCTTCACCGGTCACCAAGATGGAAAAATCCGAGTTTGGAAAATTTCTTCAAAAAATTCTAGAAATCATAAGCGTATTGGAAGCTTACCAACTTTCAAAGACTATGTCAAAAGTTCGATGAATCCAAAGAACTACGTAGAAGTCCGGCGACGTAGAAACACGGTGAAGGTGAAGCATTTTGATGCTGTTTCGAGTCTGAGTTTGGATCAAGAAGGAGGGTTGTTGTACTCAGGTTCGTGGGATAAAACTCTCAAAGTTTGGCGCGTTACGGATTTCAAGTGTATGGAATCGATTATAGCTCATGATGACGCAGTGAACGCCGTGGTTGCAGCATTTCAAACCTACGTTTTCACCGGCTCAGCCGATGGAACAGTGAAGATGTGGAGGAGAGACATCGACGGAAAAGGGAAGAAAACGAAGCATGTTTTGGATAGGATTTTGTTGAAACAAGAAAACGCTGTGACGGCTTTGACCGTTAACCATTCATCAACGATTATTTATTGCGGTTCTTCTGATGGATTGGTAAACTTCTGGGAGCGTCAGCAGAAGAATAACCTCACTCACGGCGGTGTTTTAAAGGGACACAAACTCGCAGTCCTATGTCTCGCTGCGGCAGGGAATCTTGTTTTCAGTGGTTCCGCCGATAAGAATGTTTGCGTGTGGAGGCGCGACGAGAGAGGGGCTCACATTTGTCTTTCCGTTTTGACGGGACACACTGGTCCCGTCAAATGCATTGCCGTTGAAGAACACGAGGAGGAGGATGATCGCGATGATCAACGGTGGATAGTTTATACTGGTAGTTTGGATAAGTCTGTTAAGGTCTGGCGCGTGTCTGAACATGCGCCAGAGTTAAGGTTGATGCAAGGTTGGAATTCTCCAATTGCACCTATTGGCAAAGGATTGAATTATTCTTCCCCAGGAACAATCAATGTCAGCAACAATAGTAATAGAAGGCAGTTGCAAAAATAA
Protein sequence

>MS.gene003838.t1

MTNTKGGTMLVERNTNNNSTNKIHRPKFGAFLHSEPSLFHTTNNDDDQGRISNASAASPRTYFGDSSSSNNASPNYMLSPWNQETSSPLNKSPWLMPSSEAINLFQYHHSHRHDNNYNDSYFPENGLIGSLAREEGHIYSLAVSGDMLYTGTDSKNIRVWKELKDYTGFKSSSGLVKTIVISEGNIFTGHQDGKIRVWKISSKNSRNHKRIGSLPTFKDYVKSSMNPKNYVEVRRRRNTVKVKHFDAVSSLSLDQEGGLLYSGSWDKTLKVWRVTDFKCMESIIAHDDAVNAVVAAFQTYVFTGSADGTVKMWRRDIDGKGKKTKHVLDRILLKQENAVTALTVNHSSTIIYCGSSDGLVNFWERQQKNNLTHGGVLKGHKLAVLCLAAAGNLVFSGSADKNVCVWRRDERGAHICLSVLTGHTGPVKCIAVEEHEEEDDRDDQRWIVYTGSLDKSVKVWRVSEHAPELRLMQGWNSPIAPIGKGLNYSSPGTINVSNNSNRRQLQK