AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003858

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003858.t1 MTR_4g068180 97.143 455 10 1 1 452 1 455 0.0 917
MS.gene003858.t1 MTR_2g099380 79.864 442 87 1 11 452 9 448 0.0 743
MS.gene003858.t1 MTR_2g099380 77.301 326 72 1 11 336 9 332 0.0 522
MS.gene003858.t1 MTR_3g083840 26.957 345 183 9 138 426 88 419 1.20e-26 111
MS.gene003858.t1 MTR_4g114580 28.024 339 175 8 138 420 116 441 2.42e-25 108
MS.gene003858.t1 MTR_8g085300 26.216 370 204 8 113 426 74 430 8.07e-25 106
MS.gene003858.t1 MTR_1g069705 27.397 292 147 12 120 376 46 307 1.23e-17 85.1
MS.gene003858.t1 MTR_6g016590 26.642 274 146 8 155 420 87 313 4.09e-17 83.2
MS.gene003858.t1 MTR_4g115090 24.351 308 192 10 140 436 350 627 2.15e-15 79.0
MS.gene003858.t1 MTR_5g098140 25.523 239 134 6 148 382 106 304 1.39e-14 75.5
MS.gene003858.t1 MTR_2g099185 27.219 169 99 2 213 380 372 517 2.69e-14 75.5
MS.gene003858.t1 MTR_2g099185 27.219 169 99 2 213 380 367 512 3.24e-14 75.1
MS.gene003858.t1 MTR_2g099185 27.219 169 99 2 213 380 367 512 5.12e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003858.t1 AT2G30710 74.134 433 107 3 20 452 13 440 0.0 679
MS.gene003858.t1 AT1G04830 27.160 405 224 10 80 426 43 434 1.08e-30 123
MS.gene003858.t1 AT1G04830 27.160 405 224 10 80 426 43 434 1.39e-30 123
MS.gene003858.t1 AT4G13730 25.507 345 199 6 127 426 96 427 7.92e-25 106
MS.gene003858.t1 AT4G13730 25.000 356 198 7 127 426 96 438 7.70e-23 100
MS.gene003858.t1 AT1G04830 25.676 370 231 9 80 426 43 391 2.17e-20 93.2
MS.gene003858.t1 AT4G13730 25.159 314 166 7 127 384 96 396 1.08e-18 88.2
MS.gene003858.t1 AT3G02460 26.277 274 147 8 155 420 88 314 1.44e-18 87.4
MS.gene003858.t1 AT3G02460 26.277 274 147 8 155 420 88 314 2.09e-18 86.7
MS.gene003858.t1 AT5G15930 25.275 273 151 8 155 420 85 311 4.81e-17 82.8
MS.gene003858.t1 AT3G02460 26.383 235 123 6 155 382 88 279 6.89e-17 81.6
MS.gene003858.t1 AT3G02460 26.068 234 123 6 155 381 88 278 2.62e-16 79.7
MS.gene003858.t1 AT3G02460 25.301 249 136 6 155 396 88 293 3.20e-16 80.1
MS.gene003858.t1 AT3G07890 26.360 239 132 5 148 382 109 307 3.85e-16 80.5
MS.gene003858.t1 AT3G07890 26.360 239 132 5 148 382 109 307 3.85e-16 80.5
MS.gene003858.t1 AT3G07890 26.360 239 132 5 148 382 109 307 3.85e-16 80.5
MS.gene003858.t1 AT3G07890 26.360 239 132 5 148 382 109 307 3.85e-16 80.5
MS.gene003858.t1 AT3G07890 26.360 239 132 5 148 382 109 307 3.85e-16 80.5
MS.gene003858.t1 AT2G43490 27.811 169 98 2 213 380 355 500 6.06e-14 74.7
MS.gene003858.t1 AT2G43490 27.811 169 98 2 213 380 355 500 6.06e-14 74.7
MS.gene003858.t1 AT2G43490 27.811 169 98 2 213 380 359 504 6.33e-14 74.7
MS.gene003858.t1 AT2G43490 27.811 169 98 2 213 380 359 504 6.35e-14 74.7
MS.gene003858.t1 AT2G43490 27.811 169 98 2 213 380 359 504 7.13e-14 74.3
MS.gene003858.t1 AT2G43490 27.811 169 98 2 213 380 359 504 7.13e-14 74.3
MS.gene003858.t1 AT2G43490 27.811 169 98 2 213 380 359 504 7.13e-14 74.3
MS.gene003858.t1 AT2G43490 27.811 169 98 2 213 380 359 504 7.13e-14 74.3
MS.gene003858.t1 AT3G59570 27.219 169 99 2 213 380 363 508 4.80e-13 71.6
MS.gene003858.t1 AT5G52580 24.232 293 181 10 140 419 358 622 5.28e-13 71.6
MS.gene003858.t1 AT3G59570 27.219 169 99 2 213 380 363 508 5.90e-13 71.6
MS.gene003858.t1 AT3G59570 27.219 169 99 2 213 380 363 508 5.91e-13 71.6
MS.gene003858.t1 AT5G52580 24.232 293 181 10 140 419 375 639 6.02e-13 71.6
MS.gene003858.t1 AT5G52580 24.232 293 181 10 140 419 364 628 6.06e-13 71.2
MS.gene003858.t1 AT2G37290 24.896 241 140 6 146 383 308 510 6.52e-13 71.6
MS.gene003858.t1 AT2G37290 24.896 241 140 6 146 383 308 510 7.05e-13 71.2
MS.gene003858.t1 AT4G28550 27.326 172 98 5 212 380 166 313 9.16e-13 69.7
MS.gene003858.t1 AT4G28550 27.907 172 97 5 212 380 166 313 1.86e-12 69.3
MS.gene003858.t1 AT2G20440 27.485 171 97 5 213 380 51 197 2.78e-12 67.8
MS.gene003858.t1 AT4G28550 27.811 169 95 5 212 377 166 310 6.22e-12 67.0
MS.gene003858.t1 AT2G20440 24.364 275 142 10 148 380 63 313 1.05e-11 67.0
MS.gene003858.t1 AT2G20440 24.364 275 142 10 148 380 63 313 1.05e-11 67.0
MS.gene003858.t1 AT2G20440 26.984 189 103 7 213 398 167 323 3.47e-11 65.1

Find 105 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCTTCAATTTGCTTTC+CGG 0.153454 4.2:-38363531 MS.gene003858:CDS
AAGTTCAATAAGGTGCTTTC+TGG 0.158641 4.2:-38366164 MS.gene003858:CDS
CCCTCCTTTCTATCTGAATT+AGG 0.240906 4.2:+38365082 None:intergenic
TCTGGAACAGTGGTTATATT+AGG 0.280287 4.2:-38366146 MS.gene003858:intron
ACCTCGAGATGGTGCTTTCC+CGG 0.286815 4.2:-38362390 MS.gene003858:CDS
TCGTCTGAACGTTCTGAATC+TGG 0.317488 4.2:+38365001 None:intergenic
AAGAGGAGTCTCCACACTTT+AGG 0.321748 4.2:+38365501 None:intergenic
AAAACAAGCCTCTGAATTCC+AGG 0.327397 4.2:+38364036 None:intergenic
TTTATATCAGAACACTTAGA+AGG 0.337221 4.2:-38364183 MS.gene003858:CDS
ACTCAAGAGCTTGGAATTCC+AGG 0.337608 4.2:-38362464 MS.gene003858:CDS
AGATAGAAAGGAGGGAGTTC+TGG 0.339166 4.2:-38365074 MS.gene003858:CDS
AACACCTTCCAACTCAAAAC+TGG 0.341112 4.2:-38362423 MS.gene003858:CDS
TTGATCTCATCACACGCCTT+TGG 0.368239 4.2:-38363056 MS.gene003858:CDS
TCCTCTATATGTTGTGAAAC+AGG 0.369650 4.2:+38363565 None:intergenic
TCCTGCTAGTGGATATGTTC+AGG 0.373064 4.2:-38364241 MS.gene003858:CDS
TGATCTCATCACACGCCTTT+GGG 0.373855 4.2:-38363055 MS.gene003858:CDS
TCTGCTCATCAATACTTTAC+CGG 0.374779 4.2:+38366538 None:intergenic
ACTTCTGAACTTGCTGTTGT+TGG 0.386909 4.2:+38364826 None:intergenic
GGTATACTTGCGGGTGTCTT+CGG 0.387375 4.2:+38366223 None:intergenic
AATATATACACAAGGAAGTC+TGG 0.401217 4.2:+38363003 None:intergenic
AGAGGAGTCTCCACACTTTA+GGG 0.401637 4.2:+38365502 None:intergenic
TCGTAGAGTCTGGCTGAATC+TGG 0.401808 4.2:+38367378 None:intergenic
ACTTTAGGGCGCATATAATC+TGG 0.407268 4.2:+38365516 None:intergenic
GAATTGGTCAGGAGGATAGA+TGG 0.417574 4.2:-38364003 MS.gene003858:intron
GTAACGTCAGGTACAGTTCT+TGG 0.418419 4.2:+38364855 None:intergenic
TTAAATTGAAGGAATTGGTC+AGG 0.419755 4.2:-38364014 MS.gene003858:CDS
AAGAGTTACAAAGTTCAATA+AGG 0.425239 4.2:-38366174 MS.gene003858:CDS
GATAGAAAGGAGGGAGTTCT+GGG 0.432601 4.2:-38365073 MS.gene003858:CDS
TTCACAACATATAGAGGATC+AGG 0.434173 4.2:-38363560 MS.gene003858:CDS
AGCGCCAATGGTATACTTGC+GGG 0.444539 4.2:+38366214 None:intergenic
CTTGAACGTTTCGTAGAGTC+TGG 0.447323 4.2:+38367368 None:intergenic
TTTGAGTTGGAAGGTGTTGA+AGG 0.458159 4.2:+38362428 None:intergenic
GCTCACCGTGAGAAGGAAAC+TGG 0.462813 4.2:+38362978 None:intergenic
TGCTGTGCCACATAAATGCC+CGG 0.464703 4.2:+38362371 None:intergenic
TGGCGCTAGAGCTACGGATT+CGG 0.472648 4.2:-38366198 MS.gene003858:CDS
TGCTTTCCCGGGCATTTATG+TGG 0.472854 4.2:-38362378 MS.gene003858:CDS
TATCCTCAACATTCTACAAA+AGG 0.477199 4.2:-38366481 MS.gene003858:CDS
TGCCAACTCAGCTAGCGAAA+TGG 0.482845 4.2:+38362329 None:intergenic
ACAAATTGCGTGAATTAGCT+TGG 0.484787 4.2:-38365548 MS.gene003858:CDS
GCCTGTTTCACAACATATAG+AGG 0.486010 4.2:-38363566 MS.gene003858:CDS
GAGCTTGGAATTCCAGGAGT+TGG 0.490575 4.2:-38362458 MS.gene003858:CDS
CAGACTCTACGAAACGTTCA+AGG 0.491397 4.2:-38367367 MS.gene003858:CDS
GGCACAAGTGATCAGATATC+TGG 0.493498 4.2:-38366437 MS.gene003858:CDS
GTCAGACAAACTCAAGAGCT+TGG 0.494238 4.2:-38362473 MS.gene003858:CDS
CCTCGAGATGGTGCTTTCCC+GGG 0.496826 4.2:-38362389 MS.gene003858:CDS
CTGCTCATCAATACTTTACC+GGG 0.500375 4.2:+38366539 None:intergenic
CATTACACATTTGCTCAACC+TGG 0.502850 4.2:-38364054 MS.gene003858:CDS
CCTGCTAGTGGATATGTTCA+GGG 0.504127 4.2:-38364240 MS.gene003858:CDS
ACCACCTAATTCAGATAGAA+AGG 0.505337 4.2:-38365086 MS.gene003858:CDS
ATGTAGAGGCTGATTGCTAC+TGG 0.506715 4.2:-38364110 MS.gene003858:CDS
TACCATTGGCGCTAGAGCTA+CGG 0.513971 4.2:-38366204 MS.gene003858:CDS
TAAGGTGCTTTCTGGAACAG+TGG 0.515552 4.2:-38366156 MS.gene003858:CDS
ACAGCAAGTTCAGAAGTCAT+TGG 0.516400 4.2:-38364820 MS.gene003858:CDS
ATCCGTAGCTCTAGCGCCAA+TGG 0.518827 4.2:+38366202 None:intergenic
AAAGCACCATCTCGAGGTCC+TGG 0.520492 4.2:+38362395 None:intergenic
CTCAAAGGTCGTAGCATGCC+CGG 0.521571 4.2:-38366557 MS.gene003858:CDS
AGGCGTGTGATGAGATCAAA+TGG 0.521736 4.2:+38363060 None:intergenic
GAAGGAACATTACCAACTCC+TGG 0.524180 4.2:+38362446 None:intergenic
ACTCAGCTAGCGAAATGGCT+TGG 0.527389 4.2:+38362334 None:intergenic
CCCTGAACATATCCACTAGC+AGG 0.534785 4.2:+38364240 None:intergenic
GAAAGGAGGGAGTTCTGGGA+AGG 0.535564 4.2:-38365069 MS.gene003858:CDS
TTATATCAGAACACTTAGAA+GGG 0.537210 4.2:-38364182 MS.gene003858:CDS
ATTTGCCAGTTTCCTTCTCA+CGG 0.538122 4.2:-38362983 MS.gene003858:intron
TCCTTTCTATCTGAATTAGG+TGG 0.539605 4.2:+38365085 None:intergenic
TTTGAGTTCAAGTTATCAGA+AGG 0.541216 4.2:+38366506 None:intergenic
TGAGGTCAACATGCTTCGCC+AGG 0.546292 4.2:-38364978 MS.gene003858:intron
AACTCAAAACTGGACTCACC+AGG 0.550768 4.2:-38362413 MS.gene003858:CDS
TAAAGTGTGGAGACTCCTCT+TGG 0.555773 4.2:-38365499 MS.gene003858:intron
TTCTTCAATTTGCTTTCCGG+TGG 0.556488 4.2:-38363528 MS.gene003858:CDS
CAGGTTGAGCAAATGTGTAA+TGG 0.558220 4.2:+38364055 None:intergenic
TAGCGCCAATGGTATACTTG+CGG 0.569347 4.2:+38366213 None:intergenic
TCAGATATCTGGTGCAGTAG+AGG 0.573878 4.2:-38366426 MS.gene003858:intron
GGAGTTCTGGGAAGGAAGCG+CGG 0.577143 4.2:-38365061 MS.gene003858:CDS
AGTTTCTCACACAATGATGC+TGG 0.578928 4.2:-38366458 MS.gene003858:CDS
TTTAAATCAAGGTTGCTCAA+AGG 0.582230 4.2:-38366572 MS.gene003858:intron
TGTTGGAAGAATGTAACGTC+AGG 0.582459 4.2:+38364843 None:intergenic
TACAGTTCTTGGACAATCAA+CGG 0.584447 4.2:+38364866 None:intergenic
GACACCCGCAAGTATACCAT+TGG 0.585744 4.2:-38366218 MS.gene003858:CDS
TGGAACGTATTCTTTATGCA+TGG 0.587229 4.2:-38364800 MS.gene003858:intron
TTCTGATAACTTGAACTCAA+AGG 0.587378 4.2:-38366504 MS.gene003858:CDS
GCAATTCGACATCCTGCTAG+TGG 0.588975 4.2:-38364252 MS.gene003858:CDS
TTGCTCAACCTGGAATTCAG+AGG 0.589516 4.2:-38364044 MS.gene003858:CDS
CCTAATTCAGATAGAAAGGA+GGG 0.596459 4.2:-38365082 MS.gene003858:CDS
TCAAAAGACAGTTGAACCAC+CGG 0.600802 4.2:+38363512 None:intergenic
GTAAAGTATTGATGAGCAGA+AGG 0.604241 4.2:-38366535 MS.gene003858:CDS
TAAGCTAGCTCACCGTGAGA+AGG 0.605423 4.2:+38362971 None:intergenic
GACTCACCAGGACCTCGAGA+TGG 0.605820 4.2:-38362401 MS.gene003858:CDS
ATTATATGCGCCCTAAAGTG+TGG 0.607591 4.2:-38365512 MS.gene003858:CDS
AATTGAAGGAATTGGTCAGG+AGG 0.609370 4.2:-38364011 MS.gene003858:CDS
AGACAAAATCTCTAATGTAG+AGG 0.611644 4.2:-38364124 MS.gene003858:CDS
TGGGACACATATCTAGCTGA+AGG 0.612669 4.2:-38363036 MS.gene003858:CDS
ACCTAATTCAGATAGAAAGG+AGG 0.625011 4.2:-38365083 MS.gene003858:CDS
TATATCAGAACACTTAGAAG+GGG 0.625153 4.2:-38364181 MS.gene003858:CDS
CAGCTAGATATGTGTCCCAA+AGG 0.627022 4.2:+38363040 None:intergenic
GCTGTGCCACATAAATGCCC+GGG 0.632407 4.2:+38362372 None:intergenic
ATATCAGAACACTTAGAAGG+GGG 0.643161 4.2:-38364180 MS.gene003858:CDS
CCCGGGAAAGCACCATCTCG+AGG 0.648223 4.2:+38362389 None:intergenic
TCACAACATATAGAGGATCA+GGG 0.651098 4.2:-38363559 MS.gene003858:CDS
TGTTTGTCGAAGTTGCTCGA+CGG 0.654377 4.2:-38364087 MS.gene003858:CDS
TTCAGAACGTTCAGACGATG+AGG 0.654756 4.2:-38364996 MS.gene003858:CDS
ATACACAAGGAAGTCTGGCA+AGG 0.657164 4.2:+38363008 None:intergenic
CTGCTAGTGGATATGTTCAG+GGG 0.660606 4.2:-38364239 MS.gene003858:CDS
AGACTCTACGAAACGTTCAA+GGG 0.665190 4.2:-38367366 MS.gene003858:intron
AACTGGCAAATATATACACA+AGG 0.671598 4.2:+38362995 None:intergenic
TTGCGTGAATTAGCTTGGAG+TGG 0.688224 4.2:-38365543 MS.gene003858:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATATTATTTTAGTGAAA+AGG + chr4.2:38366836-38366855 None:intergenic 10.0%
!!! ATTTATTTCTTTATTTAATC+TGG - chr4.2:38363837-38363856 MS.gene003858:intron 10.0%
!! AAGATATAGGAATAATAATA+TGG + chr4.2:38366136-38366155 None:intergenic 15.0%
!! AGATTATATTTCAAAGATAT+AGG + chr4.2:38366149-38366168 None:intergenic 15.0%
!! ATAACTAATTTCAACTTATA+TGG + chr4.2:38366438-38366457 None:intergenic 15.0%
!! GATATAAAAACAACTAAAAA+CGG + chr4.2:38365580-38365599 None:intergenic 15.0%
!!! AACATATACAAGATTAATTT+TGG - chr4.2:38366501-38366520 MS.gene003858:CDS 15.0%
!!! AATTTTTCAATTTTTTGTCA+GGG - chr4.2:38365501-38365520 MS.gene003858:CDS 15.0%
!!! TAATTTTTCAATTTTTTGTC+AGG - chr4.2:38365500-38365519 MS.gene003858:CDS 15.0%
!!! TATATATATTTTTCCTTTAG+TGG - chr4.2:38367280-38367299 MS.gene003858:intron 15.0%
!! AAGGTAAAATGATTAATGTT+TGG - chr4.2:38362921-38362940 MS.gene003858:intron 20.0%
!! AATGAATGAATCTAATAAAG+AGG + chr4.2:38362574-38362593 None:intergenic 20.0%
!! ACAGTTAAAATAGATAAAAG+AGG + chr4.2:38363965-38363984 None:intergenic 20.0%
!! ATGAATGAATCTAATAAAGA+GGG + chr4.2:38362573-38362592 None:intergenic 20.0%
!! CAGTTAAAATAGATAAAAGA+GGG + chr4.2:38363964-38363983 None:intergenic 20.0%
!! CAGTTTATCTTTAAATTTCA+AGG + chr4.2:38364654-38364673 None:intergenic 20.0%
!! GAATTGAATTATAAGAATGA+TGG + chr4.2:38362480-38362499 None:intergenic 20.0%
!! GTTATATAGAAAATCCTTAA+GGG - chr4.2:38364576-38364595 MS.gene003858:intron 20.0%
!! TAAATTGTGATTGTTATGAT+GGG + chr4.2:38363920-38363939 None:intergenic 20.0%
!! TATAAAGGAAAAAATTGTCA+GGG + chr4.2:38366302-38366321 None:intergenic 20.0%
!! TCAAATTAACCTACTTATAA+AGG + chr4.2:38366317-38366336 None:intergenic 20.0%
!! TCTCAATTAAAATAAGTGTA+TGG + chr4.2:38366537-38366556 None:intergenic 20.0%
!! TGTTATATAGAAAATCCTTA+AGG - chr4.2:38364575-38364594 MS.gene003858:intron 20.0%
!! TTAAATTGTGATTGTTATGA+TGG + chr4.2:38363921-38363940 None:intergenic 20.0%
!! TTATAAAGGAAAAAATTGTC+AGG + chr4.2:38366303-38366322 None:intergenic 20.0%
!! TTATATAGAAAATCCTTAAG+GGG - chr4.2:38364577-38364596 MS.gene003858:intron 20.0%
!! TTTATGTTCTCTTTAAATCA+AGG - chr4.2:38363192-38363211 MS.gene003858:intron 20.0%
!!! AGTATCTCAAATTATTTCTA+AGG - chr4.2:38363784-38363803 MS.gene003858:intron 20.0%
!!! ATATACAAGATTAATTTTGG+AGG - chr4.2:38366504-38366523 MS.gene003858:CDS 20.0%
!!! ATATTTTTTTGCCCATTTAT+TGG - chr4.2:38365002-38365021 MS.gene003858:CDS 20.0%
!!! CAATTTTTTCCTTTATAAGT+AGG - chr4.2:38366305-38366324 MS.gene003858:CDS 20.0%
!!! CTTTTGCTATTTAAGATAAA+TGG - chr4.2:38367006-38367025 MS.gene003858:intron 20.0%
!!! TCTAGTTTAAAATGAGTTTA+AGG - chr4.2:38362902-38362921 MS.gene003858:intron 20.0%
!!! TGAAGACTTAGAAATTATTT+TGG + chr4.2:38363050-38363069 None:intergenic 20.0%
!!! TGTTTTTAAATTGAAGGAAT+TGG - chr4.2:38365756-38365775 MS.gene003858:intron 20.0%
!!! TTCAATTTTCCTATGTATTT+GGG - chr4.2:38363668-38363687 MS.gene003858:intron 20.0%
!!! TTCTTTATTTAATCTGGATT+TGG - chr4.2:38363843-38363862 MS.gene003858:intron 20.0%
!!! TTTAAGTTTTTAAGAGAAGT+AGG - chr4.2:38364399-38364418 MS.gene003858:intron 20.0%
! AAATTGTGATTGTTATGATG+GGG + chr4.2:38363919-38363938 None:intergenic 25.0%
! AACACTAGACTAAGAATATT+GGG + chr4.2:38365029-38365048 None:intergenic 25.0%
! AAGAGTTACAAAGTTCAATA+AGG - chr4.2:38363601-38363620 MS.gene003858:intron 25.0%
! AATATCATAAATTGTGAGCA+AGG + chr4.2:38364096-38364115 None:intergenic 25.0%
! AATTGTGTATCTTTAACCAA+TGG + chr4.2:38366073-38366092 None:intergenic 25.0%
! ACAAAATGTTGTCTATAAGA+AGG + chr4.2:38364628-38364647 None:intergenic 25.0%
! ACAACTACAATAATCAGATA+TGG + chr4.2:38363726-38363745 None:intergenic 25.0%
! ACAGTATTTAAAAAGCAAGT+AGG + chr4.2:38365273-38365292 None:intergenic 25.0%
! ATAATCAGATATGGTCATTT+AGG + chr4.2:38363717-38363736 None:intergenic 25.0%
! ATGGTATGAAATCCATATAT+AGG + chr4.2:38365870-38365889 None:intergenic 25.0%
! ATTCTTATCTTGATTGTTTG+TGG - chr4.2:38364838-38364857 MS.gene003858:CDS 25.0%
! CAAAAAATATCAATAGGCTA+AGG + chr4.2:38364036-38364055 None:intergenic 25.0%
! TACAAATCCTAACTTTAAGT+TGG - chr4.2:38362974-38362993 MS.gene003858:intron 25.0%
! TCATATGAAGCATGATAATA+AGG - chr4.2:38364362-38364381 MS.gene003858:intron 25.0%
! TGAAAACTTGAGAATAGAAA+TGG + chr4.2:38365889-38365908 None:intergenic 25.0%
! TTAAAGATAAACTGACAACA+GGG - chr4.2:38364660-38364679 MS.gene003858:intron 25.0%
! TTATATCAGAACACTTAGAA+GGG - chr4.2:38365593-38365612 MS.gene003858:intron 25.0%
! TTTAAAGATAAACTGACAAC+AGG - chr4.2:38364659-38364678 MS.gene003858:intron 25.0%
! TTTATATCAGAACACTTAGA+AGG - chr4.2:38365592-38365611 MS.gene003858:intron 25.0%
!! AAATCAAACCATTTCTAGAA+AGG + chr4.2:38365472-38365491 None:intergenic 25.0%
!! AAGAGATTTTCTTTTGTATC+GGG - chr4.2:38367035-38367054 MS.gene003858:intron 25.0%
!! AAGGATGAAATATTTTACAC+TGG + chr4.2:38364183-38364202 None:intergenic 25.0%
!! AATTTCTTCAATTTGCTTTC+CGG - chr4.2:38366244-38366263 MS.gene003858:CDS 25.0%
!! ACAAATCCTAACTTTAAGTT+GGG - chr4.2:38362975-38362994 MS.gene003858:intron 25.0%
!! ATGAAATATTTTACACTGGT+AGG + chr4.2:38364179-38364198 None:intergenic 25.0%
!! ATGTTTCTATAAGTTTGATG+TGG - chr4.2:38363406-38363425 MS.gene003858:intron 25.0%
!! ATTGATTTATGCTCTTACTA+AGG - chr4.2:38366666-38366685 MS.gene003858:intron 25.0%
!! CTTCAATTTTCCTATGTATT+TGG - chr4.2:38363667-38363686 MS.gene003858:intron 25.0%
!! GAAGAGATTTTCTTTTGTAT+CGG - chr4.2:38367034-38367053 MS.gene003858:intron 25.0%
!! GAATTATAAGAATGATGGAA+TGG + chr4.2:38362475-38362494 None:intergenic 25.0%
!! TAAGGCAAAATCTCAATTTT+GGG + chr4.2:38362750-38362769 None:intergenic 25.0%
!! TCATCATCTTATTTATCCAT+TGG - chr4.2:38366054-38366073 MS.gene003858:intron 25.0%
!! TTAAGGCAAAATCTCAATTT+TGG + chr4.2:38362751-38362770 None:intergenic 25.0%
!!! AAATTATTTTGGTATGTCTG+CGG + chr4.2:38363039-38363058 None:intergenic 25.0%
!!! ATTCAGTTTCTAGTTTCTAT+GGG + chr4.2:38367259-38367278 None:intergenic 25.0%
!!! CATAAAAGTTTTGTTCATTG+AGG - chr4.2:38364449-38364468 MS.gene003858:intron 25.0%
!!! CTTAGCCTATTGATATTTTT+TGG - chr4.2:38364034-38364053 MS.gene003858:CDS 25.0%
!!! TCAAATTGATTCGCATAATT+AGG - chr4.2:38362536-38362555 MS.gene003858:intron 25.0%
AACTGGCAAATATATACACA+AGG + chr4.2:38366783-38366802 None:intergenic 30.0%
AAGTTGTTCTTGAGAAAGAT+AGG + chr4.2:38366591-38366610 None:intergenic 30.0%
AATATATACACAAGGAAGTC+TGG + chr4.2:38366775-38366794 None:intergenic 30.0%
AATCATTGTCATACCAGTAA+TGG + chr4.2:38365194-38365213 None:intergenic 30.0%
AATTCATATGTACCAGTTCA+CGG + chr4.2:38365380-38365399 None:intergenic 30.0%
ACACTAGACTAAGAATATTG+GGG + chr4.2:38365028-38365047 None:intergenic 30.0%
ACTTCTATTCTTAATACAGG+AGG - chr4.2:38363448-38363467 MS.gene003858:intron 30.0%
AGACAAAATCTCTAATGTAG+AGG - chr4.2:38365651-38365670 MS.gene003858:intron 30.0%
AGTTGTTCTTGAGAAAGATA+GGG + chr4.2:38366590-38366609 None:intergenic 30.0%
ATACTAACAAACCCTAATAC+TGG + chr4.2:38365129-38365148 None:intergenic 30.0%
ATTCAATTGTCAACTGTGTA+TGG - chr4.2:38365397-38365416 MS.gene003858:intron 30.0%
CTATGCATCATATGTTATAC+CGG - chr4.2:38365222-38365241 MS.gene003858:intron 30.0%
CTTGTAAGAGAATAATTCCA+TGG + chr4.2:38364480-38364499 None:intergenic 30.0%
CTTGTTGCAAAACATTTATG+TGG + chr4.2:38364518-38364537 None:intergenic 30.0%
GAAATTATAGCAATGCTTGA+AGG + chr4.2:38365826-38365845 None:intergenic 30.0%
GAACACTAGACTAAGAATAT+TGG + chr4.2:38365030-38365049 None:intergenic 30.0%
GAAGCTAGATAGATTTCTTA+AGG + chr4.2:38362768-38362787 None:intergenic 30.0%
GAATCAATTTGAATAAGCAG+CGG + chr4.2:38362528-38362547 None:intergenic 30.0%
GAATGCAATTCTAGCATTTA+TGG - chr4.2:38367092-38367111 MS.gene003858:intron 30.0%
GAGACTTCTATTCTTAATAC+AGG - chr4.2:38363445-38363464 MS.gene003858:intron 30.0%
GCAATCTAACAAACATACAA+TGG + chr4.2:38364890-38364909 None:intergenic 30.0%
GTATGAAATCCATATATAGG+TGG + chr4.2:38365867-38365886 None:intergenic 30.0%
TAAGAATAGAAGTCTCTTCT+AGG + chr4.2:38363441-38363460 None:intergenic 30.0%
TACTAACAAACCCTAATACT+GGG + chr4.2:38365128-38365147 None:intergenic 30.0%
TACTAAGATGTTAAGCCTTA+TGG - chr4.2:38364140-38364159 MS.gene003858:CDS 30.0%
TACTGTACTTAATCTAGTAC+TGG - chr4.2:38365287-38365306 MS.gene003858:intron 30.0%
TATATCAGAACACTTAGAAG+GGG - chr4.2:38365594-38365613 MS.gene003858:intron 30.0%
TATCCTCAACATTCTACAAA+AGG - chr4.2:38363294-38363313 MS.gene003858:intron 30.0%
TGCTGCCAAAAAATATCAAT+AGG + chr4.2:38364042-38364061 None:intergenic 30.0%
TTAAATTGAAGGAATTGGTC+AGG - chr4.2:38365761-38365780 MS.gene003858:intron 30.0%
TTAATTAGTTAGACCCCTTA+AGG + chr4.2:38364593-38364612 None:intergenic 30.0%
TTCTGATAACTTGAACTCAA+AGG - chr4.2:38363271-38363290 MS.gene003858:intron 30.0%
TTTAAATCAAGGTTGCTCAA+AGG - chr4.2:38363203-38363222 MS.gene003858:intron 30.0%
TTTACCTTTCCAGTACATAT+TGG - chr4.2:38366925-38366944 MS.gene003858:intron 30.0%
! CTGTCATGGATAATTTTCTT+AGG - chr4.2:38365051-38365070 MS.gene003858:CDS 30.0%
! GTTTTGCAACAAGATTATGA+GGG - chr4.2:38364525-38364544 MS.gene003858:intron 30.0%
! TGTCTATAAGAAGGTATGAT+GGG + chr4.2:38364619-38364638 None:intergenic 30.0%
! TGTTTTGCAACAAGATTATG+AGG - chr4.2:38364524-38364543 MS.gene003858:intron 30.0%
! TTGTCTATAAGAAGGTATGA+TGG + chr4.2:38364620-38364639 None:intergenic 30.0%
! TTTGAGTTCAAGTTATCAGA+AGG + chr4.2:38363272-38363291 None:intergenic 30.0%
!! CATTCAGTTTCTAGTTTCTA+TGG + chr4.2:38367260-38367279 None:intergenic 30.0%
!! TGTTTTATTGCGAACAAAAC+TGG + chr4.2:38366973-38366992 None:intergenic 30.0%
!!! ATTGATATTTTTTGGCAGCA+AGG - chr4.2:38364042-38364061 MS.gene003858:CDS 30.0%
!!! GAGGCTTGTTTTTAAATTGA+AGG - chr4.2:38365750-38365769 MS.gene003858:intron 30.0%
!!! TTATACCGGTTTTAGAAGAT+GGG - chr4.2:38365236-38365255 MS.gene003858:intron 30.0%
AAATCCATATATAGGTGGTG+AGG + chr4.2:38365862-38365881 None:intergenic 35.0%
AAGTTAGGATTTGTAGTCTG+TGG + chr4.2:38362969-38362988 None:intergenic 35.0%
ACAAATTGCGTGAATTAGCT+TGG - chr4.2:38364227-38364246 MS.gene003858:CDS 35.0%
ACCACCTAATTCAGATAGAA+AGG - chr4.2:38364689-38364708 MS.gene003858:intron 35.0%
ACCTAATTCAGATAGAAAGG+AGG - chr4.2:38364692-38364711 MS.gene003858:intron 35.0%
ACCTGATATGTATCCATTAC+TGG - chr4.2:38365178-38365197 MS.gene003858:intron 35.0%
ACTAACAAACCCTAATACTG+GGG + chr4.2:38365127-38365146 None:intergenic 35.0%
ACTGATCCCAACTTAAAGTT+AGG + chr4.2:38362984-38363003 None:intergenic 35.0%
AGAATATTGGGGCCAATAAA+TGG + chr4.2:38365017-38365036 None:intergenic 35.0%
ATATCAGAACACTTAGAAGG+GGG - chr4.2:38365595-38365614 MS.gene003858:intron 35.0%
ATATGGATGTCAAACTGTCA+AGG + chr4.2:38364202-38364221 None:intergenic 35.0%
ATGGTCATTTAGGAGTAACA+AGG + chr4.2:38363707-38363726 None:intergenic 35.0%
CAACCATACAAAATACAGCA+GGG + chr4.2:38367193-38367212 None:intergenic 35.0%
CACGCAATTTGTCTACAATA+TGG + chr4.2:38364219-38364238 None:intergenic 35.0%
CATTATCAGCCAATATGTAC+TGG + chr4.2:38366937-38366956 None:intergenic 35.0%
CCTAATTCAGATAGAAAGGA+GGG - chr4.2:38364693-38364712 MS.gene003858:intron 35.0%
GAATATTGGGGCCAATAAAT+GGG + chr4.2:38365016-38365035 None:intergenic 35.0%
GGAAAAAAGAAATTCTCGAC+AGG + chr4.2:38367172-38367191 None:intergenic 35.0%
GGCAAAAATAGGTTTCCATA+AGG + chr4.2:38364158-38364177 None:intergenic 35.0%
TAAAAATCTCAACCTCCCTT+GGG - chr4.2:38363519-38363538 MS.gene003858:CDS 35.0%
TAATGAGCAATAACACTGTC+TGG + chr4.2:38365327-38365346 None:intergenic 35.0%
TACAGTTCTTGGACAATCAA+CGG + chr4.2:38364912-38364931 None:intergenic 35.0%
TACTGGTATGACAATGATTC+AGG - chr4.2:38365195-38365214 MS.gene003858:intron 35.0%
TCACAACATATAGAGGATCA+GGG - chr4.2:38366216-38366235 MS.gene003858:CDS 35.0%
TCCTCTATATGTTGTGAAAC+AGG + chr4.2:38366213-38366232 None:intergenic 35.0%
TCCTTTCTATCTGAATTAGG+TGG + chr4.2:38364693-38364712 None:intergenic 35.0%
TCTATTCTTAATACAGGAGG+AGG - chr4.2:38363451-38363470 MS.gene003858:intron 35.0%
TCTGCTCATCAATACTTTAC+CGG + chr4.2:38363240-38363259 None:intergenic 35.0%
TGGAACGTATTCTTTATGCA+TGG - chr4.2:38364975-38364994 MS.gene003858:intron 35.0%
TTAAAAATCTCAACCTCCCT+TGG - chr4.2:38363518-38363537 MS.gene003858:CDS 35.0%
TTAAACTCAGTGAGTGTGTT+TGG - chr4.2:38362844-38362863 MS.gene003858:intron 35.0%
TTACACTGGTAGGCAAAAAT+AGG + chr4.2:38364169-38364188 None:intergenic 35.0%
TTCACAACATATAGAGGATC+AGG - chr4.2:38366215-38366234 MS.gene003858:CDS 35.0%
TTCTTGAGAAAGATAGGGTT+TGG + chr4.2:38366585-38366604 None:intergenic 35.0%
! AAGTTCAATAAGGTGCTTTC+TGG - chr4.2:38363611-38363630 MS.gene003858:intron 35.0%
! ACTCCTTTTGTAGAATGTTG+AGG + chr4.2:38363300-38363319 None:intergenic 35.0%
! ATGGTACTGAATGATACTCT+TGG - chr4.2:38365416-38365435 MS.gene003858:intron 35.0%
! CACGTATTCCTTTCTAGAAA+TGG - chr4.2:38365461-38365480 MS.gene003858:intron 35.0%
! TAGGTTAATTTGAGTCAGCT+TGG - chr4.2:38366324-38366343 MS.gene003858:intron 35.0%
! TCTGGAACAGTGGTTATATT+AGG - chr4.2:38363629-38363648 MS.gene003858:intron 35.0%
! TTACGTTCATGATTTTCTCG+TGG + chr4.2:38362351-38362370 None:intergenic 35.0%
! TTTCCCTGCTGTATTTTGTA+TGG - chr4.2:38367187-38367206 MS.gene003858:intron 35.0%
!! ACCAGTAATGGATACATATC+AGG + chr4.2:38365182-38365201 None:intergenic 35.0%
!! ATATTAGAGCTCTGAATACC+TGG + chr4.2:38364818-38364837 None:intergenic 35.0%
!! GTAAAGTATTGATGAGCAGA+AGG - chr4.2:38363240-38363259 MS.gene003858:intron 35.0%
!!! GTTATACCGGTTTTAGAAGA+TGG - chr4.2:38365235-38365254 MS.gene003858:intron 35.0%
AAAAATCTCAACCTCCCTTG+GGG - chr4.2:38363520-38363539 MS.gene003858:CDS 40.0%
AAAACAAGCCTCTGAATTCC+AGG + chr4.2:38365742-38365761 None:intergenic 40.0%
AAAGATGACTCTTAGCTGCT+TGG - chr4.2:38365076-38365095 MS.gene003858:CDS 40.0%
AACACCTTCCAACTCAAAAC+TGG - chr4.2:38367352-38367371 MS.gene003858:intron 40.0%
AAGTCTTCAGAATCACTTCG+AGG - chr4.2:38363061-38363080 MS.gene003858:CDS 40.0%
AATGCCTCACCACCTATATA+TGG - chr4.2:38365855-38365874 MS.gene003858:intron 40.0%
AATTGAAGGAATTGGTCAGG+AGG - chr4.2:38365764-38365783 MS.gene003858:intron 40.0%
ACAGCAAGTTCAGAAGTCAT+TGG - chr4.2:38364955-38364974 MS.gene003858:intron 40.0%
AGACTCTACGAAACGTTCAA+GGG - chr4.2:38362409-38362428 MS.gene003858:CDS 40.0%
AGGCTAAGGCAACAATAATG+CGG + chr4.2:38364022-38364041 None:intergenic 40.0%
AGTGCGAGCAAAATAGAAGA+AGG + chr4.2:38364315-38364334 None:intergenic 40.0%
AGTTTCTCACACAATGATGC+TGG - chr4.2:38363317-38363336 MS.gene003858:intron 40.0%
ATATGTACCAGTTCACGGAA+AGG + chr4.2:38365375-38365394 None:intergenic 40.0%
ATATGTTGTGAAACAGGCTC+TGG + chr4.2:38366207-38366226 None:intergenic 40.0%
ATTATATGCGCCCTAAAGTG+TGG - chr4.2:38364263-38364282 MS.gene003858:intron 40.0%
ATTTGCCAGTTTCCTTCTCA+CGG - chr4.2:38366792-38366811 MS.gene003858:intron 40.0%
CATTACACATTTGCTCAACC+TGG - chr4.2:38365721-38365740 MS.gene003858:intron 40.0%
CCCTCCTTTCTATCTGAATT+AGG + chr4.2:38364696-38364715 None:intergenic 40.0%
CGCAGTTCAAAAGTTTCAAC+AGG + chr4.2:38366184-38366203 None:intergenic 40.0%
CTCTTGGTGAATCTTAGAAG+AGG - chr4.2:38365432-38365451 MS.gene003858:intron 40.0%
CTGCTCATCAATACTTTACC+GGG + chr4.2:38363239-38363258 None:intergenic 40.0%
GCAACCATACAAAATACAGC+AGG + chr4.2:38367194-38367213 None:intergenic 40.0%
GCCTGTTTCACAACATATAG+AGG - chr4.2:38366209-38366228 MS.gene003858:CDS 40.0%
TAGTCTAGTGTTCTCTGTCA+TGG - chr4.2:38365037-38365056 MS.gene003858:CDS 40.0%
TATATCTCCTTTCCGTGAAC+TGG - chr4.2:38365365-38365384 MS.gene003858:intron 40.0%
TATCAGGTACCAGTATCTAG+CGG + chr4.2:38365166-38365185 None:intergenic 40.0%
TCAAAAGACAGTTGAACCAC+CGG + chr4.2:38366266-38366285 None:intergenic 40.0%
TCAGCCAATATGTACTGGAA+AGG + chr4.2:38366932-38366951 None:intergenic 40.0%
TCAGCTACGACTTGAATCTT+GGG - chr4.2:38362654-38362673 MS.gene003858:intron 40.0%
TGAGTTTGTCTGACCACTAA+AGG + chr4.2:38367296-38367315 None:intergenic 40.0%
TGCGAACAAAACTGGAAATC+AGG + chr4.2:38366965-38366984 None:intergenic 40.0%
TGTTCAGGAATGGTACTTGT+TGG - chr4.2:38366884-38366903 MS.gene003858:intron 40.0%
TGTTGGAAGAATGTAACGTC+AGG + chr4.2:38364935-38364954 None:intergenic 40.0%
TTCAGCTACGACTTGAATCT+TGG - chr4.2:38362653-38362672 MS.gene003858:intron 40.0%
! CAGGTTGAGCAAATGTGTAA+TGG + chr4.2:38365723-38365742 None:intergenic 40.0%
! CTATAAGAAGGTATGATGGG+AGG + chr4.2:38364616-38364635 None:intergenic 40.0%
! TAGAAGGGGGTATAGATGAT+TGG - chr4.2:38365608-38365627 MS.gene003858:intron 40.0%
! TTCGGATAAGTTTTCCCCAA+GGG + chr4.2:38363537-38363556 None:intergenic 40.0%
! TTCTTCAATTTGCTTTCCGG+TGG - chr4.2:38366247-38366266 MS.gene003858:CDS 40.0%
! TTGTGATTGTTATGATGGGG+CGG + chr4.2:38363916-38363935 None:intergenic 40.0%
!! AAAGTTTCCAGAAGCACTTG+TGG - chr4.2:38366349-38366368 MS.gene003858:intron 40.0%
!! ACTTCTGAACTTGCTGTTGT+TGG + chr4.2:38364952-38364971 None:intergenic 40.0%
!! ACTTTAGGGCGCATATAATC+TGG + chr4.2:38364262-38364281 None:intergenic 40.0%
!! GAAGTCCCATCTTCTAAAAC+CGG + chr4.2:38365244-38365263 None:intergenic 40.0%
!! TTTGAGTTGGAAGGTGTTGA+AGG + chr4.2:38367350-38367369 None:intergenic 40.0%
!!! AGATGGTACGCTTTTTTCTC+AGG - chr4.2:38365789-38365808 MS.gene003858:intron 40.0%
AACTCAAAACTGGACTCACC+AGG - chr4.2:38367362-38367381 MS.gene003858:intron 45.0%
AAGAGGAGTCTCCACACTTT+AGG + chr4.2:38364277-38364296 None:intergenic 45.0%
ACTCAAGAGCTTGGAATTCC+AGG - chr4.2:38367311-38367330 MS.gene003858:intron 45.0%
ACTCCTCTTGGTAAGCTCTA+TGG - chr4.2:38364288-38364307 MS.gene003858:intron 45.0%
AGAGGAGTCTCCACACTTTA+GGG + chr4.2:38364276-38364295 None:intergenic 45.0%
AGATAGAAAGGAGGGAGTTC+TGG - chr4.2:38364701-38364720 MS.gene003858:intron 45.0%
AGCACAACTTCCCCAGTATT+AGG - chr4.2:38365114-38365133 MS.gene003858:intron 45.0%
AGGCGTGTGATGAGATCAAA+TGG + chr4.2:38366718-38366737 None:intergenic 45.0%
ATACACAAGGAAGTCTGGCA+AGG + chr4.2:38366770-38366789 None:intergenic 45.0%
ATCAGGTACCAGTATCTAGC+GGG + chr4.2:38365165-38365184 None:intergenic 45.0%
ATGTAGAGGCTGATTGCTAC+TGG - chr4.2:38365665-38365684 MS.gene003858:intron 45.0%
ATTGTGTACCCGCTAGATAC+TGG - chr4.2:38365154-38365173 MS.gene003858:intron 45.0%
CAGACTCTACGAAACGTTCA+AGG - chr4.2:38362408-38362427 MS.gene003858:CDS 45.0%
CAGCTAGATATGTGTCCCAA+AGG + chr4.2:38366738-38366757 None:intergenic 45.0%
CATTCCTGAACAGCAAGACT+AGG + chr4.2:38366876-38366895 None:intergenic 45.0%
CATTTATGTGGCCAGCATCA+AGG + chr4.2:38364506-38364525 None:intergenic 45.0%
CTTACAAGAGACCTTGATGC+TGG - chr4.2:38364492-38364511 MS.gene003858:intron 45.0%
CTTGAACGTTTCGTAGAGTC+TGG + chr4.2:38362410-38362429 None:intergenic 45.0%
GAACTGGGCGTAGACAATTA+AGG + chr4.2:38367131-38367150 None:intergenic 45.0%
GAAGGAACATTACCAACTCC+TGG + chr4.2:38367332-38367351 None:intergenic 45.0%
GAATTGGTCAGGAGGATAGA+TGG - chr4.2:38365772-38365791 MS.gene003858:intron 45.0%
GACGATCAGCCCAAATACAT+AGG + chr4.2:38363680-38363699 None:intergenic 45.0%
GAGAACTAGACACACACACT+CGG - chr4.2:38363151-38363170 MS.gene003858:intron 45.0%
GATAGAAAGGAGGGAGTTCT+GGG - chr4.2:38364702-38364721 MS.gene003858:intron 45.0%
GCACAACTTCCCCAGTATTA+GGG - chr4.2:38365115-38365134 MS.gene003858:intron 45.0%
GGCACAAGTGATCAGATATC+TGG - chr4.2:38363338-38363357 MS.gene003858:intron 45.0%
GGCTAAGGCAACAATAATGC+GGG + chr4.2:38364021-38364040 None:intergenic 45.0%
GTAACGTCAGGTACAGTTCT+TGG + chr4.2:38364923-38364942 None:intergenic 45.0%
GTCAGACAAACTCAAGAGCT+TGG - chr4.2:38367302-38367321 MS.gene003858:intron 45.0%
TAAAGTGTGGAGACTCCTCT+TGG - chr4.2:38364276-38364295 MS.gene003858:intron 45.0%
TAGCGCCAATGGTATACTTG+CGG + chr4.2:38363565-38363584 None:intergenic 45.0%
TCAGATATCTGGTGCAGTAG+AGG - chr4.2:38363349-38363368 MS.gene003858:intron 45.0%
TGATCTCATCACACGCCTTT+GGG - chr4.2:38366720-38366739 MS.gene003858:intron 45.0%
TGGGACACATATCTAGCTGA+AGG - chr4.2:38366739-38366758 MS.gene003858:intron 45.0%
TGTTTGTCGAAGTTGCTCGA+CGG - chr4.2:38365688-38365707 MS.gene003858:intron 45.0%
TTCAGAACGTTCAGACGATG+AGG - chr4.2:38364779-38364798 MS.gene003858:intron 45.0%
TTGATCTCATCACACGCCTT+TGG - chr4.2:38366719-38366738 MS.gene003858:intron 45.0%
TTGCTCAACCTGGAATTCAG+AGG - chr4.2:38365731-38365750 MS.gene003858:intron 45.0%
! AGTATCTAGCGGGTACACAA+TGG + chr4.2:38365155-38365174 None:intergenic 45.0%
! CCTGCTAGTGGATATGTTCA+GGG - chr4.2:38365535-38365554 MS.gene003858:CDS 45.0%
! CGTTCATGATTTTCTCGTGG+AGG + chr4.2:38362348-38362367 None:intergenic 45.0%
! CTGCTAGTGGATATGTTCAG+GGG - chr4.2:38365536-38365555 MS.gene003858:CDS 45.0%
! CTTCGGATAAGTTTTCCCCA+AGG + chr4.2:38363538-38363557 None:intergenic 45.0%
! TCCTGCTAGTGGATATGTTC+AGG - chr4.2:38365534-38365553 MS.gene003858:CDS 45.0%
! TCGTCTGAACGTTCTGAATC+TGG + chr4.2:38364777-38364796 None:intergenic 45.0%
! TCGTTTTCCACAAGTGCTTC+TGG + chr4.2:38366359-38366378 None:intergenic 45.0%
! TGTAGTCTGTGGCTCTACTT+TGG + chr4.2:38362958-38362977 None:intergenic 45.0%
! TTGCGTGAATTAGCTTGGAG+TGG - chr4.2:38364232-38364251 MS.gene003858:CDS 45.0%
!! ATCTCCTAGTCTTGCTGTTC+AGG - chr4.2:38366869-38366888 MS.gene003858:intron 45.0%
!! CTAGTCTTGCTGTTCAGGAA+TGG - chr4.2:38366874-38366893 MS.gene003858:intron 45.0%
!! TAAGGTGCTTTCTGGAACAG+TGG - chr4.2:38363619-38363638 MS.gene003858:intron 45.0%
!!! GAGTCCAGTTTTGAGTTGGA+AGG + chr4.2:38367359-38367378 None:intergenic 45.0%
!!! TGGTGAGTCCAGTTTTGAGT+TGG + chr4.2:38367363-38367382 None:intergenic 45.0%
AATTGTCAGGGCAAACCTCG+CGG + chr4.2:38366290-38366309 None:intergenic 50.0%
AATTGTCTACGCCCAGTTCG+AGG - chr4.2:38367132-38367151 MS.gene003858:intron 50.0%
AGCGCCAATGGTATACTTGC+GGG + chr4.2:38363564-38363583 None:intergenic 50.0%
ATGTGCATGCACCTCGAACT+GGG + chr4.2:38367146-38367165 None:intergenic 50.0%
CCCTGAACATATCCACTAGC+AGG + chr4.2:38365538-38365557 None:intergenic 50.0%
GACACCCGCAAGTATACCAT+TGG - chr4.2:38363557-38363576 MS.gene003858:CDS 50.0%
GAGCTTGGAATTCCAGGAGT+TGG - chr4.2:38367317-38367336 MS.gene003858:intron 50.0%
GCAATTCGACATCCTGCTAG+TGG - chr4.2:38365523-38365542 MS.gene003858:CDS 50.0%
GGTATACTTGCGGGTGTCTT+CGG + chr4.2:38363555-38363574 None:intergenic 50.0%
GGTCCATAGAGCTTACCAAG+AGG + chr4.2:38364294-38364313 None:intergenic 50.0%
TAAGCTAGCTCACCGTGAGA+AGG + chr4.2:38366807-38366826 None:intergenic 50.0%
TACCATTGGCGCTAGAGCTA+CGG - chr4.2:38363571-38363590 MS.gene003858:intron 50.0%
TATGTGCATGCACCTCGAAC+TGG + chr4.2:38367147-38367166 None:intergenic 50.0%
TCGTAGAGTCTGGCTGAATC+TGG + chr4.2:38362400-38362419 None:intergenic 50.0%
TGCTGTGCCACATAAATGCC+CGG + chr4.2:38367407-38367426 None:intergenic 50.0%
TGCTTTCCCGGGCATTTATG+TGG - chr4.2:38367397-38367416 MS.gene003858:CDS 50.0%
TGTTCATTGAGGCTGAGCCA+TGG - chr4.2:38364460-38364479 MS.gene003858:intron 50.0%
! CAACTGTCTTTTGATCCGCG+AGG - chr4.2:38366272-38366291 MS.gene003858:CDS 50.0%
! CACGGTGAGCTAGCTTACTT+TGG - chr4.2:38366810-38366829 MS.gene003858:intron 50.0%
! GGATAAGTTTTCCCCAAGGG+AGG + chr4.2:38363534-38363553 None:intergenic 50.0%
! GTTATGATGGGGCGGTGATA+TGG + chr4.2:38363908-38363927 None:intergenic 50.0%
!! TGAGTGTGTTTGGCTCTGTG+CGG - chr4.2:38362854-38362873 MS.gene003858:intron 50.0%
ACCTCGAGATGGTGCTTTCC+CGG - chr4.2:38367385-38367404 MS.gene003858:CDS 55.0%
CTCAAAGGTCGTAGCATGCC+CGG - chr4.2:38363218-38363237 MS.gene003858:intron 55.0%
GCTCACCGTGAGAAGGAAAC+TGG + chr4.2:38366800-38366819 None:intergenic 55.0%
GCTGTGCCACATAAATGCCC+GGG + chr4.2:38367406-38367425 None:intergenic 55.0%
GGCGGTGATATGGAAGACTG+CGG + chr4.2:38363898-38363917 None:intergenic 55.0%
TGAGGTCAACATGCTTCGCC+AGG - chr4.2:38364797-38364816 MS.gene003858:intron 55.0%
TGGCGCTAGAGCTACGGATT+CGG - chr4.2:38363577-38363596 MS.gene003858:intron 55.0%
! AAAGCACCATCTCGAGGTCC+TGG + chr4.2:38367383-38367402 None:intergenic 55.0%
!! ATCCGTAGCTCTAGCGCCAA+TGG + chr4.2:38363576-38363595 None:intergenic 55.0%
!! GAAAGGAGGGAGTTCTGGGA+AGG - chr4.2:38364706-38364725 MS.gene003858:intron 55.0%
CCTCGAGATGGTGCTTTCCC+GGG - chr4.2:38367386-38367405 MS.gene003858:CDS 60.0%
GACTCACCAGGACCTCGAGA+TGG - chr4.2:38367374-38367393 MS.gene003858:CDS 60.0%
!! GGAGTTCTGGGAAGGAAGCG+CGG - chr4.2:38364714-38364733 MS.gene003858:intron 60.0%
!! CCCGGGAAAGCACCATCTCG+AGG + chr4.2:38367389-38367408 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 38362336 38367461 38362336 ID=MS.gene003858
chr4.2 mRNA 38362336 38367461 38362336 ID=MS.gene003858.t1;Parent=MS.gene003858
chr4.2 exon 38367367 38367461 38367367 ID=MS.gene003858.t1.exon1;Parent=MS.gene003858.t1
chr4.2 CDS 38367367 38367461 38367367 ID=cds.MS.gene003858.t1;Parent=MS.gene003858.t1
chr4.2 exon 38366427 38366583 38366427 ID=MS.gene003858.t1.exon2;Parent=MS.gene003858.t1
chr4.2 CDS 38366427 38366583 38366427 ID=cds.MS.gene003858.t1;Parent=MS.gene003858.t1
chr4.2 exon 38366147 38366330 38366147 ID=MS.gene003858.t1.exon3;Parent=MS.gene003858.t1
chr4.2 CDS 38366147 38366330 38366147 ID=cds.MS.gene003858.t1;Parent=MS.gene003858.t1
chr4.2 exon 38365500 38365570 38365500 ID=MS.gene003858.t1.exon4;Parent=MS.gene003858.t1
chr4.2 CDS 38365500 38365570 38365500 ID=cds.MS.gene003858.t1;Parent=MS.gene003858.t1
chr4.2 exon 38364979 38365116 38364979 ID=MS.gene003858.t1.exon5;Parent=MS.gene003858.t1
chr4.2 CDS 38364979 38365116 38364979 ID=cds.MS.gene003858.t1;Parent=MS.gene003858.t1
chr4.2 exon 38364801 38364892 38364801 ID=MS.gene003858.t1.exon6;Parent=MS.gene003858.t1
chr4.2 CDS 38364801 38364892 38364801 ID=cds.MS.gene003858.t1;Parent=MS.gene003858.t1
chr4.2 exon 38364004 38364275 38364004 ID=MS.gene003858.t1.exon7;Parent=MS.gene003858.t1
chr4.2 CDS 38364004 38364275 38364004 ID=cds.MS.gene003858.t1;Parent=MS.gene003858.t1
chr4.2 exon 38363504 38363589 38363504 ID=MS.gene003858.t1.exon8;Parent=MS.gene003858.t1
chr4.2 CDS 38363504 38363589 38363504 ID=cds.MS.gene003858.t1;Parent=MS.gene003858.t1
chr4.2 exon 38362984 38363085 38362984 ID=MS.gene003858.t1.exon9;Parent=MS.gene003858.t1
chr4.2 CDS 38362984 38363085 38362984 ID=cds.MS.gene003858.t1;Parent=MS.gene003858.t1
chr4.2 exon 38362336 38362497 38362336 ID=MS.gene003858.t1.exon10;Parent=MS.gene003858.t1
chr4.2 CDS 38362336 38362497 38362336 ID=cds.MS.gene003858.t1;Parent=MS.gene003858.t1
Gene Sequence

>MS.gene003858

ATGAACAAGCCTCCACGAGAAAATCATGAACGTAACAACAACACTGTTGCTGCTCTTGATTCCAGATTCAGCCAGACTCTACGAAACGTTCAAGGGTAATCATTTCTCATTCTCATATTCATTCACACAGATCTCGCCATTCCATCATTCTTATAATTCAATTCAATTAATTGCTCAATTCATTATGATCCGCTGCTTATTCAAATTGATTCGCATAATTAGGATATCATGTCTCCCTCTTTATTAGATTCATTCATTCATTTATTGAAATTATGTTACTTTTTTCTTTTATTCATTTTTATATATATTAATTTAGTTTCAGCTACGACTTGAATCTTGGGATTCATTTTTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAAAAGTGATGTTAGAATCCCAAAATTGAGATTTTGCCTTAAGAAATCTATCTAGCTTCAAAAATGATATTTTGAGCTATTGAATCAAACATTATTATTTAGCTTCAGCTTACTGTTAAACTCAGTGAGTGTGTTTGGCTCTGTGCGGCGAAAATTGACTTTGTAAAACTGATTCTAGTTTAAAATGAGTTTAAGGTAAAATGATTAATGTTTGGATACGTTCACGCCAAAGTAGAGCCACAGACTACAAATCCTAACTTTAAGTTGGGATCAGTTATAAAGACAAAAAAACAATTCTAATTGAGAACCGCAGACATACCAAAATAATTTCTAAGTCTTCAGAATCACTTCGAGGAACACATGCACTTATTTTTATATAAATTTATCAAAATATGAGACACTTTAGTCTCTTTTTGTCATCAGAGAACTAGACACACACACTCGGTTTAGTTATTGATATCAATTTATGTTCTCTTTAAATCAAGGTTGCTCAAAGGTCGTAGCATGCCCGGTAAAGTATTGATGAGCAGAAGGTCAGAACCTTCTGATAACTTGAACTCAAAGGTATCCTCAACATTCTACAAAAGGAGTTTCTCACACAATGATGCTGGCACAAGTGATCAGATATCTGGTGCAGTAGAGGTCATCTTCGTATTCTTAATAATAACATTTCTTATATGTTTCTATAAGTTTGATGTGGATTAGTTCACCTAGAAGAGACTTCTATTCTTAATACAGGAGGAGGTTCAGAGTACAAGTAAATCAGCTAGTGCTTCTAATGTTAGTAAGTTAAAAATCTCAACCTCCCTTGGGGAAAACTTATCCGAAGACACCCGCAAGTATACCATTGGCGCTAGAGCTACGGATTCGGCAAGAGTTACAAAGTTCAATAAGGTGCTTTCTGGAACAGTGGTTATATTAGGTATTTTACTTTCATACTTCAATTTTCCTATGTATTTGGGCTGATCGTCTTTTCCTTGTTACTCCTAAATGACCATATCTGATTATTGTAGTTGTCAGACAATATGAATAATAATATCTTGATTTTATCTTAGAGTATCTCAAATTATTTCTAAGGATTAATTTTCAAATTTGTTTATATTTTATGATTTATTTCTTTATTTAATCTGGATTTGGAGTTAATATTATCTTAAATAAAGATCGATCCGCAGTCTTCCATATCACCGCCCCATCATAACAATCACAATTTAACGTCTTTATTTCTTTCTCTTCCCTCTTTTATCTATTTTAACTGTATTGCATGTAAAGATGTGTGCTCTGATTAACTGCCCGCATTATTGTTGCCTTAGCCTATTGATATTTTTTGGCAGCAAGGTTCAAAATAATTTGCAACAGAAATCGAGCCTTGCTCACAATTTATGATATTGCTTAAATTTTATCAGTTTCGTATTACTAAGATGTTAAGCCTTATGGAAACCTATTTTTGCCTACCAGTGTAAAATATTTCATCCTTGACAGTTTGACATCCATATTGTAGACAAATTGCGTGAATTAGCTTGGAGTGGTGTTCCAGATTATATGCGCCCTAAAGTGTGGAGACTCCTCTTGGTAAGCTCTATGGACCTTCTTCTATTTTGCTCGCACTAGCTTATGCTCTTAGCACAGCGCTCAGTCATATGAAGCATGATAATAAGGAACTGTTGAGCTCATTTAAGTTTTTAAGAGAAGTAGGTTCTTATTTTATTTATTGATGTCTTAACATAAAAGTTTTGTTCATTGAGGCTGAGCCATGGAATTATTCTCTTACAAGAGACCTTGATGCTGGCCACATAAATGTTTTGCAACAAGATTATGAGGGAGATTTTAGAAAAGAAGATAGTGTATTTGTTATATAGAAAATCCTTAAGGGGTCTAACTAATTAACCTCCCATCATACCTTCTTATAGACAACATTTTGTCTTCCTTGAAATTTAAAGATAAACTGACAACAGGGATATGAACCACCTAATTCAGATAGAAAGGAGGGAGTTCTGGGAAGGAAGCGCGGAGAGTATCTTGACTGTATTTCTCAGTATTATGATATTCCAGATTCAGAACGTTCAGACGATGAGGTCAACATGCTTCGCCAGGTATTCAGAGCTCTAATATATTCTTATCTTGATTGTTTGTGGAAACAGAATTATTCTTTTAACAGCTGCCATTGTATGTTTGTTAGATTGCCGTTGATTGTCCAAGAACTGTACCTGACGTTACATTCTTCCAACAACAGCAAGTTCAGAAGTCATTGGAACGTATTCTTTATGCATGGTAAAATATTTTTTTGCCCATTTATTGGCCCCAATATTCTTAGTCTAGTGTTCTCTGTCATGGATAATTTTCTTAGGTGAAAGATGACTCTTAGCTGCTTGGCTAAGAAAGTCACACAGCACAACTTCCCCAGTATTAGGGTTTGTTAGTATGTACCATTGTGTACCCGCTAGATACTGGTACCTGATATGTATCCATTACTGGTATGACAATGATTCAGGAGCGCTATGCATCATATGTTATACCGGTTTTAGAAGATGGGACTTCTACGAACCTACTTGCTTTTTAAATACTGTACTTAATCTAGTACTGGTACAAAAAAAGTTACCAGACAGTGTTATTGCTCATTATTAGAATTTGTTTGTTGCTATATCTCCTTTCCGTGAACTGGTACATATGAATTCAATTGTCAACTGTGTATGGTACTGAATGATACTCTTGGTGAATCTTAGAAGAGGCATAGTCACGTATTCCTTTCTAGAAATGGTTTGATTTTACTTATATAATTTTTCAATTTTTTGTCAGGGCAATTCGACATCCTGCTAGTGGATATGTTCAGGGGATAAATGATCTCGTTACACCGTTTTTAGTTGTTTTTATATCAGAACACTTAGAAGGGGGTATAGATGATTGGTCGATGTCTGATTTATCTTCAGACAAAATCTCTAATGTAGAGGCTGATTGCTACTGGTGTTTGTCGAAGTTGCTCGACGGTATGCAAGACCATTACACATTTGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAATTGAAGGAATTGGTCAGGAGGATAGATGGTACGCTTTTTTCTCAGGACTTTTGTTTTCCTTCAAGCATTGCTATAATTTCATGAACTTAAATGCCTCACCACCTATATATGGATTTCATACCATTTCTATTCTCAAGTTTTCATTTTTTATTTTCAAATAGTGTTCTTAATTCTAAATTCTAGTAATATTAATAATTAGTTTACGTTTTTAGAGTAAAAATACTCATATTAATAATTAGTTTAAGTTTTTAGAGTAAAGTACTCTCAAATAGTGTCGAAAGTTGATCATCATCATCTTATTTATCCATTGGTTAAAGATACACAATTCATTGATATGCATTAACAAACTTGATCATTATTTTTGTTGCCATATTATTATTCCTATATCTTTGAAATATAATCTGATCTGATGTGTCCTGTTGAAACTTTTGAACTGCGCCAGAGCCTGTTTCACAACATATAGAGGATCAGGGACTTGAATTTCTTCAATTTGCTTTCCGGTGGTTCAACTGTCTTTTGATCCGCGAGGTTTGCCCTGACAATTTTTTCCTTTATAAGTAGGTTAATTTGAGTCAGCTTGGATAAAGTTTCCAGAAGCACTTGTGGAAAACGAAATGTTATGAACATCTTATAATTACTGAGTTTTTTAAATAATAGTTTCTTGTATAACCATATAAGTTGAAATTAGTTATGCAGTTAAATATCTTCACATGATTTTCTTGTAATTTGTCAATAAACATATACAAGATTAATTTTGGAGGTGAAGAACCATACACTTATTTTAATTGAGAAGCTTTTGTTAAGTTAAAAACTAATCCAAACCCTATCTTTCTCAAGAACAACTTCACATGTGTCAATGATAAAGTGTCTGAATGGTAAAATGGACTATGACAAACATGAATTGATTTATGCTCTTACTAAGGCTGATATCTGATTTGATAACTAGATACCATTTGATCTCATCACACGCCTTTGGGACACATATCTAGCTGAAGGAGACGCCTTGCCAGACTTCCTTGTGTATATATTTGCCAGTTTCCTTCTCACGGTGAGCTAGCTTACTTTGGCCTTTTCACTAAAATAATATATTTGAATTAAATTTCATCTCCTAGTCTTGCTGTTCAGGAATGGTACTTGTTGGTCTTGTTGATGTGTAGTTTTTACCTTTCCAGTACATATTGGCTGATAATGCTGAGCCTGATTTCCAGTTTTGTTCGCAATAAAACAAACTTGTCGTTTGCTTTTGCTATTTAAGATAAATGGCTTTCGAAGAGATTTTCTTTTGTATCGGGATGTTTTCAATGTGCATTGAAGTTGCATAATGAAGAATGCAATTCTAGCATTTATGGATGTACTTGTATTCCTTAATTGTCTACGCCCAGTTCGAGGTGCATGCACATACACCTGTCGAGAATTTCTTTTTTCCCTGCTGTATTTTGTATGGTTGCTTAGATTATTTACACTCTCTTCTTACTCTTATCAATGATTAACCCATAGAAACTAGAAACTGAATGTATATATATTTTTCCTTTAGTGGTCAGACAAACTCAAGAGCTTGGAATTCCAGGAGTTGGTAATGTTCCTTCAACACCTTCCAACTCAAAACTGGACTCACCAGGACCTCGAGATGGTGCTTTCCCGGGCATTTATGTGGCACAGCATGTTCAACAACTCTCCAAGCCATTTCGCTAGCTGA
Protein sequence

>MS.gene003858.t1

MNKPPRENHERNNNTVAALDSRFSQTLRNVQGLLKGRSMPGKVLMSRRSEPSDNLNSKVSSTFYKRSFSHNDAGTSDQISGAVEEEVQSTSKSASASNVSKLKISTSLGENLSEDTRKYTIGARATDSARVTKFNKVLSGTVVILDKLRELAWSGVPDYMRPKVWRLLLGYEPPNSDRKEGVLGRKRGEYLDCISQYYDIPDSERSDDEVNMLRQIAVDCPRTVPDVTFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFISEHLEGGIDDWSMSDLSSDKISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSQHIEDQGLEFLQFAFRWFNCLLIREIPFDLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLKSLEFQELVMFLQHLPTQNWTHQDLEMVLSRAFMWHSMFNNSPSHFAS