AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004409

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004409.t1 MTR_2g019230 83.210 405 33 4 1 370 1 405 0.0 657
MS.gene004409.t1 MTR_3g108860 32.872 289 166 7 84 370 84 346 5.60e-46 160
MS.gene004409.t1 MTR_3g073640 32.353 204 104 8 122 295 182 381 1.60e-21 95.9
MS.gene004409.t1 MTR_4g114110 28.626 262 165 8 40 290 97 347 1.60e-20 92.8
MS.gene004409.t1 MTR_2g008440 32.212 208 101 7 121 295 184 384 1.35e-19 90.5
MS.gene004409.t1 MTR_8g085600 26.957 230 155 6 73 298 131 351 6.24e-17 82.0
MS.gene004409.t1 MTR_8g030940 28.346 254 162 10 85 329 92 334 7.31e-15 75.5
MS.gene004409.t1 MTR_3g094850 29.947 187 111 7 124 303 107 280 7.49e-14 72.4
MS.gene004409.t1 MTR_8g080370 29.630 216 137 7 88 299 121 325 1.33e-12 68.9
MS.gene004409.t1 MTR_7g070320 32.192 146 93 5 121 264 526 667 3.41e-11 65.1
MS.gene004409.t1 MTR_2g094093 25.182 274 187 7 86 351 83 346 4.86e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004409.t1 AT1G30090 58.867 406 123 6 1 370 1 398 5.78e-166 469
MS.gene004409.t1 AT2G24540 35.922 309 175 9 65 369 82 371 4.02e-57 191
MS.gene004409.t1 AT1G22040 34.146 205 101 8 121 295 180 380 1.38e-21 96.3
MS.gene004409.t1 AT1G55270 28.910 211 143 5 82 291 141 345 2.77e-18 86.3
MS.gene004409.t1 AT1G55270 28.910 211 143 5 82 291 15 219 4.62e-18 84.3
MS.gene004409.t1 AT2G21950 28.061 196 121 7 121 309 125 307 2.56e-13 70.9
MS.gene004409.t1 AT1G67480 29.665 209 137 5 88 293 109 310 6.19e-13 69.7
MS.gene004409.t1 AT1G67480 29.665 209 137 5 88 293 109 310 6.19e-13 69.7
MS.gene004409.t1 AT1G67480 29.665 209 137 5 88 293 109 310 6.19e-13 69.7
MS.gene004409.t1 AT1G27420 24.848 165 116 3 173 337 121 277 1.15e-11 65.9
MS.gene004409.t1 AT5G60570 26.070 257 158 7 46 297 91 320 3.67e-11 64.7
MS.gene004409.t1 AT5G60570 26.070 257 158 7 46 297 91 320 3.67e-11 64.7
MS.gene004409.t1 AT5G60570 26.070 257 158 7 46 297 91 320 3.67e-11 64.7

Find 113 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCCTCACAACTTTCTTT+TGG 0.176864 2.3:+67420123 None:intergenic
GGTTCAAGCGTGGTTGTTTA+TGG 0.236597 2.3:-67420345 MS.gene004409:CDS
CATCAGGTAAGCCGGAATTA+AGG 0.248226 2.3:+67421075 None:intergenic
TAATTGTCTTCTTCGTCTTC+CGG 0.313205 2.3:-67421042 MS.gene004409:CDS
TTGTCCTTGCAAGGCATTGC+AGG 0.324010 2.3:+67420825 None:intergenic
TGTCGTAGGCCGGAATCTTC+TGG 0.330235 2.3:-67420175 MS.gene004409:CDS
AAGAAAGTTGTGAGGGGAAA+TGG 0.336256 2.3:-67420119 MS.gene004409:CDS
TGACACTATCTCCCAAGTTT+AGG 0.343062 2.3:-67421165 MS.gene004409:CDS
AGCCATAGTTTCCCAGCTAT+TGG 0.348050 2.3:+67420392 None:intergenic
TGCCAACATGGGAACCAATA+TGG 0.351045 2.3:-67420517 MS.gene004409:CDS
CTTCCCAGGAATCGGCTTCC+TGG 0.361899 2.3:+67420271 None:intergenic
AGGCAAAGGGGAGCCATCTA+TGG 0.368132 2.3:+67420248 None:intergenic
CCTCTAGGAGAGACATAAAA+AGG 0.369553 2.3:+67420435 None:intergenic
AGAGCTTGAAGGGGTCAAAT+TGG 0.369698 2.3:+67420050 None:intergenic
TAGATCCGATTAGCGGGAAT+TGG 0.370137 2.3:-67420548 MS.gene004409:CDS
AACCAATAGCTGGGAAACTA+TGG 0.377206 2.3:-67420394 MS.gene004409:CDS
GCGTGCCAATTCCCGCTAAT+CGG 0.383115 2.3:+67420543 None:intergenic
GTTCAGAACTGCAGCATCAT+AGG 0.399835 2.3:+67420491 None:intergenic
ATAACCAGGAAGCCGATTCC+TGG 0.405175 2.3:-67420275 MS.gene004409:CDS
AAGAGAAGAACCCTTAATTC+CGG 0.413005 2.3:-67421086 MS.gene004409:CDS
ATCAGGTAAGCCGGAATTAA+GGG 0.416448 2.3:+67421076 None:intergenic
GTTTCCCAGCTATTGGTTCT+CGG 0.422970 2.3:+67420399 None:intergenic
AGCATCATAGGATGCCATAT+TGG 0.428156 2.3:+67420503 None:intergenic
TGCATATTTGCTCAGGCAAA+GGG 0.438541 2.3:+67420235 None:intergenic
GCTCGAAAGAATGAAGCTTA+AGG 0.440805 2.3:-67420301 MS.gene004409:CDS
TCACAAGCATTCACAGCAAA+AGG 0.445454 2.3:+67420210 None:intergenic
CAACAGCAACCAGAAGATTC+CGG 0.446885 2.3:+67420166 None:intergenic
TTATGTCTCTCCTAGAGGAC+AGG 0.451993 2.3:-67420430 MS.gene004409:CDS
TTTGACCCCTTCAAGCTCTC+AGG 0.453320 2.3:-67420046 MS.gene004409:CDS
AACCACCGCTAACCTAAACT+TGG 0.453592 2.3:+67421153 None:intergenic
AAAGGTTTGCATATTTGCTC+AGG 0.456311 2.3:+67420228 None:intergenic
CGTGGATTGTCCTCTTGACT+TGG 0.459145 2.3:-67420724 MS.gene004409:CDS
AAGGACAAGGTTTGTCCTCA+TGG 0.464137 2.3:-67420810 MS.gene004409:CDS
ATGATGCTGCAGTTCTGAAC+GGG 0.464281 2.3:-67420488 MS.gene004409:CDS
ATCTATGGCTTCCCAGGAAT+CGG 0.471739 2.3:+67420263 None:intergenic
GATTCCTGGGAAGCCATAGA+TGG 0.472750 2.3:-67420261 MS.gene004409:CDS
CCTCTTGCAGACAGCCCTAC+AGG 0.472883 2.3:+67421004 None:intergenic
GTCAAATTTATGTCGTAGGC+CGG 0.477828 2.3:-67420185 MS.gene004409:CDS
ATCTCCCAAGTTTAGGTTAG+CGG 0.477981 2.3:-67421158 MS.gene004409:CDS
TTGTAACAGAAGGATGGTTA+TGG 0.483194 2.3:-67420458 MS.gene004409:CDS
CAATTAAGAGCAACATCATC+AGG 0.483657 2.3:+67421059 None:intergenic
CGGAATCTTCTGGTTGCTGT+TGG 0.483823 2.3:-67420165 MS.gene004409:CDS
GGAGCCATCTATGGCTTCCC+AGG 0.485903 2.3:+67420257 None:intergenic
TAGTACTGATCTTTATGAGC+TGG 0.486572 2.3:-67420586 MS.gene004409:CDS
ACGATCCGAGAACCAATAGC+TGG 0.496530 2.3:-67420404 MS.gene004409:CDS
AATAGCACCTGAGAGCTTGA+AGG 0.504117 2.3:+67420039 None:intergenic
TTGCATATTTGCTCAGGCAA+AGG 0.504929 2.3:+67420234 None:intergenic
CTTGCAAGGCATTGCAGGGA+TGG 0.507543 2.3:+67420830 None:intergenic
AGCTGGGAAACTATGGCTGT+TGG 0.507613 2.3:-67420387 MS.gene004409:CDS
GATGGGATGGTTTATGCAGC+TGG 0.507844 2.3:-67420615 MS.gene004409:CDS
CAGGATGAATGACTTTGAAC+CGG 0.508558 2.3:+67421023 None:intergenic
TGCCATATTGGTTCCCATGT+TGG 0.508940 2.3:+67420515 None:intergenic
TGCAATGCCTTGCAAGGACA+AGG 0.510866 2.3:-67420823 MS.gene004409:CDS
ATGGGATGGTTTATGCAGCT+GGG 0.512009 2.3:-67420614 MS.gene004409:CDS
AGCAACATCATCAGGTAAGC+CGG 0.518929 2.3:+67421067 None:intergenic
AGGTATTAGATCCGATTAGC+GGG 0.521082 2.3:-67420554 MS.gene004409:CDS
TTGGGAGATAGTGTCATTTG+AGG 0.521340 2.3:+67421172 None:intergenic
AATGGAACTTCAGTGTTCAA+TGG 0.527552 2.3:-67420101 MS.gene004409:CDS
ATAGCACCTGAGAGCTTGAA+GGG 0.534517 2.3:+67420040 None:intergenic
GCTCAGAAACAACAAATAAG+TGG 0.537113 2.3:+67420322 None:intergenic
TAACCAGGAAGCCGATTCCT+GGG 0.538113 2.3:-67420274 MS.gene004409:CDS
CTTAGAGAATGATCTAACTC+TGG 0.539641 2.3:+67421106 None:intergenic
TTTGCCAGTGGAGTAATCGA+TGG 0.542803 2.3:-67420633 MS.gene004409:CDS
CAAGCACCGGTTCACAAGCT+AGG 0.543317 2.3:-67421199 MS.gene004409:CDS
TTGCCAGTGGAGTAATCGAT+GGG 0.543911 2.3:-67420632 MS.gene004409:CDS
AAGAGGTGGCATATGTTACT+TGG 0.546808 2.3:-67420987 MS.gene004409:intron
GGACTTAGAGAAGGGTGGAC+TGG 0.550423 2.3:-67420366 MS.gene004409:CDS
GGATCACCTAGCTTGTGAAC+CGG 0.553072 2.3:+67421193 None:intergenic
TTGGCACGCTATTGCCAACA+TGG 0.553982 2.3:-67420529 MS.gene004409:CDS
TCAAAGTCATTCATCCTGTA+GGG 0.557607 2.3:-67421018 MS.gene004409:CDS
GGATCGTAGACCTGTCCTCT+AGG 0.560032 2.3:+67420420 None:intergenic
CATCCCTGCAATGCCTTGCA+AGG 0.560526 2.3:-67420829 MS.gene004409:CDS
GATTGTCAAATTTATGTCGT+AGG 0.561359 2.3:-67420189 MS.gene004409:CDS
GAATGATCTAACTCTGGCAT+CGG 0.561877 2.3:+67421112 None:intergenic
CATCCCATCGATTACTCCAC+TGG 0.564791 2.3:+67420629 None:intergenic
TGTCCTTGCAAGGCATTGCA+GGG 0.566024 2.3:+67420826 None:intergenic
TCTTTACGTATGCGGTGGCA+TGG 0.567533 2.3:-67420754 MS.gene004409:CDS
AACCCAAAAGAAAGTTGTGA+GGG 0.567884 2.3:-67420126 MS.gene004409:CDS
TTCAAAGTCATTCATCCTGT+AGG 0.569327 2.3:-67421019 MS.gene004409:CDS
TATGATGCTGCAGTTCTGAA+CGG 0.569619 2.3:-67420489 MS.gene004409:CDS
GTAGGGCTGTCTGCAAGAGG+TGG 0.571680 2.3:-67421001 MS.gene004409:CDS
ATGGCTGTTGGACTTAGAGA+AGG 0.574595 2.3:-67420375 MS.gene004409:CDS
CCTGTAGGGCTGTCTGCAAG+AGG 0.578172 2.3:-67421004 MS.gene004409:CDS
CAGTGGAGTAATCGATGGGA+TGG 0.581579 2.3:-67420628 MS.gene004409:CDS
GGACAAACCTTGTCCTTGCA+AGG 0.597418 2.3:+67420816 None:intergenic
TGGGATGGTTTATGCAGCTG+GGG 0.601401 2.3:-67420613 MS.gene004409:CDS
GAAGCTTAAGGTTTATAACC+AGG 0.604476 2.3:-67420289 MS.gene004409:CDS
TCCCAAGTTTAGGTTAGCGG+TGG 0.605858 2.3:-67421155 MS.gene004409:CDS
TTATGAGCTGGATTCAGCTG+AGG 0.606127 2.3:-67420574 MS.gene004409:CDS
TATTTCAACACCAAGTCAAG+AGG 0.607388 2.3:+67420714 None:intergenic
CGGTGGCATGGTCTCTGACG+TGG 0.609464 2.3:-67420742 MS.gene004409:CDS
GAGGTATTAGATCCGATTAG+CGG 0.618113 2.3:-67420555 MS.gene004409:CDS
GGGAAACTGCTTGTAACAGA+AGG 0.619168 2.3:-67420468 MS.gene004409:CDS
CGATCCGAGAACCAATAGCT+GGG 0.621734 2.3:-67420403 MS.gene004409:CDS
TGGCTGTTGGACTTAGAGAA+GGG 0.623432 2.3:-67420374 MS.gene004409:CDS
AACTGCTTGTAACAGAAGGA+TGG 0.627353 2.3:-67420464 MS.gene004409:CDS
TGGCACGCTATTGCCAACAT+GGG 0.627378 2.3:-67420528 MS.gene004409:CDS
TGAATCGAATGATCAGTGCT+AGG 0.644133 2.3:-67420662 MS.gene004409:CDS
CTGTTGGACTTAGAGAAGGG+TGG 0.655252 2.3:-67420371 MS.gene004409:CDS
GGTAATCTTTACGTATGCGG+TGG 0.656082 2.3:-67420759 MS.gene004409:CDS
TGTGTTTCGATGCCTCACGA+TGG 0.656289 2.3:-67420780 MS.gene004409:CDS
ACCACCGCTAACCTAAACTT+GGG 0.656767 2.3:+67421154 None:intergenic
GCATATTTGCTCAGGCAAAG+GGG 0.660049 2.3:+67420236 None:intergenic
ACGTAAAGATTACCATCGTG+AGG 0.668276 2.3:+67420768 None:intergenic
AGGGTGGACTGGTTCAAGCG+TGG 0.672213 2.3:-67420355 MS.gene004409:CDS
GGGATGGTTTATGCAGCTGG+GGG 0.673599 2.3:-67420612 MS.gene004409:CDS
GAACCCAAAAGAAAGTTGTG+AGG 0.676488 2.3:-67420127 MS.gene004409:CDS
ACTGATCATTCGATTCATCA+CGG 0.677591 2.3:+67420668 None:intergenic
GGATGGTTTATGCAGCTGGG+GGG 0.678556 2.3:-67420611 MS.gene004409:CDS
ACCCAAAAGAAAGTTGTGAG+GGG 0.696628 2.3:-67420125 MS.gene004409:CDS
TAGCACCTGAGAGCTTGAAG+GGG 0.706757 2.3:+67420041 None:intergenic
GATGGTAATCTTTACGTATG+CGG 0.716864 2.3:-67420762 MS.gene004409:CDS
GAAACACACCGAAAACCATG+AGG 0.732405 2.3:+67420795 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTTACTAATAGGAAGCAAAT+GGG - chr2.3:67420310-67420329 MS.gene004409:CDS 25.0%
!! GTCAAATTGGATAAACTTTT+AGG + chr2.3:67421198-67421217 None:intergenic 25.0%
!! TTTTACTAATAGGAAGCAAA+TGG - chr2.3:67420309-67420328 MS.gene004409:CDS 25.0%
!!! AAGAGAGGTTTTTTACTAAT+AGG - chr2.3:67420299-67420318 MS.gene004409:CDS 25.0%
GATTGTCAAATTTATGTCGT+AGG - chr2.3:67421069-67421088 MS.gene004409:CDS 30.0%
TATGCAAATACAAAAAGCCA+AGG + chr2.3:67420346-67420365 None:intergenic 30.0%
TTTGCATATCATAAGTGTAC+TGG - chr2.3:67420358-67420377 MS.gene004409:CDS 30.0%
!! TTGATCTAACTCACTTTTCT+TGG - chr2.3:67420401-67420420 MS.gene004409:CDS 30.0%
AAAGGTTTGCATATTTGCTC+AGG + chr2.3:67421033-67421052 None:intergenic 35.0%
AACCCAAAAGAAAGTTGTGA+GGG - chr2.3:67421132-67421151 MS.gene004409:CDS 35.0%
AAGAGAAGAACCCTTAATTC+CGG - chr2.3:67420172-67420191 MS.gene004409:CDS 35.0%
AATGGAACTTCAGTGTTCAA+TGG - chr2.3:67421157-67421176 MS.gene004409:CDS 35.0%
ACTGATCATTCGATTCATCA+CGG + chr2.3:67420593-67420612 None:intergenic 35.0%
AGTGTACTGGAAAGATTCAA+TGG - chr2.3:67420371-67420390 MS.gene004409:CDS 35.0%
ATGAGATCACGAAAAATCGT+TGG - chr2.3:67420566-67420585 MS.gene004409:CDS 35.0%
CAATTAAGAGCAACATCATC+AGG + chr2.3:67420202-67420221 None:intergenic 35.0%
CTTAGAGAATGATCTAACTC+TGG + chr2.3:67420155-67420174 None:intergenic 35.0%
GAAGCTTAAGGTTTATAACC+AGG - chr2.3:67420969-67420988 MS.gene004409:intron 35.0%
GATGGTAATCTTTACGTATG+CGG - chr2.3:67420496-67420515 MS.gene004409:CDS 35.0%
GCTCAGAAACAACAAATAAG+TGG + chr2.3:67420939-67420958 None:intergenic 35.0%
TAATTGTCTTCTTCGTCTTC+CGG - chr2.3:67420216-67420235 MS.gene004409:CDS 35.0%
TATTTCAACACCAAGTCAAG+AGG + chr2.3:67420547-67420566 None:intergenic 35.0%
TCAAAGTCATTCATCCTGTA+GGG - chr2.3:67420240-67420259 MS.gene004409:CDS 35.0%
TTCAAAGTCATTCATCCTGT+AGG - chr2.3:67420239-67420258 MS.gene004409:CDS 35.0%
TTGTAACAGAAGGATGGTTA+TGG - chr2.3:67420800-67420819 MS.gene004409:CDS 35.0%
! AAATGGGTTTCAAAGATCCT+TGG - chr2.3:67420326-67420345 MS.gene004409:CDS 35.0%
! TGTTACTTGGTAGTAAAGAG+AGG - chr2.3:67420284-67420303 MS.gene004409:CDS 35.0%
!! TAGTACTGATCTTTATGAGC+TGG - chr2.3:67420672-67420691 MS.gene004409:CDS 35.0%
!!! ACTTTCTTTTGGGTTCAGTA+TGG + chr2.3:67421127-67421146 None:intergenic 35.0%
AACCAATAGCTGGGAAACTA+TGG - chr2.3:67420864-67420883 MS.gene004409:CDS 40.0%
AACTGCTTGTAACAGAAGGA+TGG - chr2.3:67420794-67420813 MS.gene004409:CDS 40.0%
AAGAAAGTTGTGAGGGGAAA+TGG - chr2.3:67421139-67421158 MS.gene004409:CDS 40.0%
AAGAGGTGGCATATGTTACT+TGG - chr2.3:67420271-67420290 MS.gene004409:CDS 40.0%
ACCCAAAAGAAAGTTGTGAG+GGG - chr2.3:67421133-67421152 MS.gene004409:CDS 40.0%
ACGTAAAGATTACCATCGTG+AGG + chr2.3:67420493-67420512 None:intergenic 40.0%
AGCATCATAGGATGCCATAT+TGG + chr2.3:67420758-67420777 None:intergenic 40.0%
AGGTATTAGATCCGATTAGC+GGG - chr2.3:67420704-67420723 MS.gene004409:CDS 40.0%
ATCAGGTAAGCCGGAATTAA+GGG + chr2.3:67420185-67420204 None:intergenic 40.0%
CAGGATGAATGACTTTGAAC+CGG + chr2.3:67420238-67420257 None:intergenic 40.0%
GAACCCAAAAGAAAGTTGTG+AGG - chr2.3:67421131-67421150 MS.gene004409:CDS 40.0%
GAATGATCTAACTCTGGCAT+CGG + chr2.3:67420149-67420168 None:intergenic 40.0%
GCTCGAAAGAATGAAGCTTA+AGG - chr2.3:67420957-67420976 MS.gene004409:intron 40.0%
GTCAAATTTATGTCGTAGGC+CGG - chr2.3:67421073-67421092 MS.gene004409:CDS 40.0%
TACTGGAAAGATTCAATGGC+AGG - chr2.3:67420375-67420394 MS.gene004409:CDS 40.0%
TCACAAGCATTCACAGCAAA+AGG + chr2.3:67421051-67421070 None:intergenic 40.0%
TGAATCGAATGATCAGTGCT+AGG - chr2.3:67420596-67420615 MS.gene004409:CDS 40.0%
TGACACTATCTCCCAAGTTT+AGG - chr2.3:67420093-67420112 MS.gene004409:CDS 40.0%
TGCATATTTGCTCAGGCAAA+GGG + chr2.3:67421026-67421045 None:intergenic 40.0%
TTGCATATTTGCTCAGGCAA+AGG + chr2.3:67421027-67421046 None:intergenic 40.0%
! AGGTTTGTCCTCATGGTTTT+CGG - chr2.3:67420455-67420474 MS.gene004409:CDS 40.0%
! ATCTCCCAAGTTTAGGTTAG+CGG - chr2.3:67420100-67420119 MS.gene004409:CDS 40.0%
! ATTTTCGTCTCAACAAGCAC+CGG - chr2.3:67420046-67420065 MS.gene004409:CDS 40.0%
! CCTCTAGGAGAGACATAAAA+AGG + chr2.3:67420826-67420845 None:intergenic 40.0%
! CCTTTTTATGTCTCTCCTAG+AGG - chr2.3:67420823-67420842 MS.gene004409:CDS 40.0%
! GAGGTATTAGATCCGATTAG+CGG - chr2.3:67420703-67420722 MS.gene004409:CDS 40.0%
! TCCCCTCACAACTTTCTTTT+GGG + chr2.3:67421137-67421156 None:intergenic 40.0%
! TTCCCCTCACAACTTTCTTT+TGG + chr2.3:67421138-67421157 None:intergenic 40.0%
!! TATGATGCTGCAGTTCTGAA+CGG - chr2.3:67420769-67420788 MS.gene004409:CDS 40.0%
!! TTGGGAGATAGTGTCATTTG+AGG + chr2.3:67420089-67420108 None:intergenic 40.0%
AACCACCGCTAACCTAAACT+TGG + chr2.3:67420108-67420127 None:intergenic 45.0%
AAGGACAAGGTTTGTCCTCA+TGG - chr2.3:67420448-67420467 MS.gene004409:CDS 45.0%
AATAGCACCTGAGAGCTTGA+AGG + chr2.3:67421222-67421241 None:intergenic 45.0%
ACCACCGCTAACCTAAACTT+GGG + chr2.3:67420107-67420126 None:intergenic 45.0%
AGAGCTTGAAGGGGTCAAAT+TGG + chr2.3:67421211-67421230 None:intergenic 45.0%
AGCAACATCATCAGGTAAGC+CGG + chr2.3:67420194-67420213 None:intergenic 45.0%
AGCCATAGTTTCCCAGCTAT+TGG + chr2.3:67420869-67420888 None:intergenic 45.0%
ATAGCACCTGAGAGCTTGAA+GGG + chr2.3:67421221-67421240 None:intergenic 45.0%
ATCTATGGCTTCCCAGGAAT+CGG + chr2.3:67420998-67421017 None:intergenic 45.0%
ATGGCTGTTGGACTTAGAGA+AGG - chr2.3:67420883-67420902 MS.gene004409:intron 45.0%
ATGGGATGGTTTATGCAGCT+GGG - chr2.3:67420644-67420663 MS.gene004409:CDS 45.0%
CAACAGCAACCAGAAGATTC+CGG + chr2.3:67421095-67421114 None:intergenic 45.0%
CATCAGGTAAGCCGGAATTA+AGG + chr2.3:67420186-67420205 None:intergenic 45.0%
GAAACACACCGAAAACCATG+AGG + chr2.3:67420466-67420485 None:intergenic 45.0%
GCATATTTGCTCAGGCAAAG+GGG + chr2.3:67421025-67421044 None:intergenic 45.0%
GGGAAACTGCTTGTAACAGA+AGG - chr2.3:67420790-67420809 MS.gene004409:CDS 45.0%
GGTAATCTTTACGTATGCGG+TGG - chr2.3:67420499-67420518 MS.gene004409:CDS 45.0%
GGTTCAAGCGTGGTTGTTTA+TGG - chr2.3:67420913-67420932 MS.gene004409:intron 45.0%
GTTCAGAACTGCAGCATCAT+AGG + chr2.3:67420770-67420789 None:intergenic 45.0%
TAGATCCGATTAGCGGGAAT+TGG - chr2.3:67420710-67420729 MS.gene004409:CDS 45.0%
TGCCAACATGGGAACCAATA+TGG - chr2.3:67420741-67420760 MS.gene004409:CDS 45.0%
TGGCTGTTGGACTTAGAGAA+GGG - chr2.3:67420884-67420903 MS.gene004409:intron 45.0%
TTATGAGCTGGATTCAGCTG+AGG - chr2.3:67420684-67420703 MS.gene004409:CDS 45.0%
TTATGTCTCTCCTAGAGGAC+AGG - chr2.3:67420828-67420847 MS.gene004409:CDS 45.0%
TTGCCAGTGGAGTAATCGAT+GGG - chr2.3:67420626-67420645 MS.gene004409:CDS 45.0%
TTTGCCAGTGGAGTAATCGA+TGG - chr2.3:67420625-67420644 MS.gene004409:CDS 45.0%
!! ATGATGCTGCAGTTCTGAAC+GGG - chr2.3:67420770-67420789 MS.gene004409:CDS 45.0%
!! GTTTCCCAGCTATTGGTTCT+CGG + chr2.3:67420862-67420881 None:intergenic 45.0%
!! TGCCATATTGGTTCCCATGT+TGG + chr2.3:67420746-67420765 None:intergenic 45.0%
!!! GCTAGGTCATTTTTTGCCAG+TGG - chr2.3:67420613-67420632 MS.gene004409:CDS 45.0%
ACGATCCGAGAACCAATAGC+TGG - chr2.3:67420854-67420873 MS.gene004409:CDS 50.0%
AGCTGGGAAACTATGGCTGT+TGG - chr2.3:67420871-67420890 MS.gene004409:intron 50.0%
CAGTGGAGTAATCGATGGGA+TGG - chr2.3:67420630-67420649 MS.gene004409:CDS 50.0%
CGATCCGAGAACCAATAGCT+GGG - chr2.3:67420855-67420874 MS.gene004409:CDS 50.0%
CTGTTGGACTTAGAGAAGGG+TGG - chr2.3:67420887-67420906 MS.gene004409:intron 50.0%
GATGGGATGGTTTATGCAGC+TGG - chr2.3:67420643-67420662 MS.gene004409:CDS 50.0%
GATTCCTGGGAAGCCATAGA+TGG - chr2.3:67420997-67421016 MS.gene004409:CDS 50.0%
GGACAAACCTTGTCCTTGCA+AGG + chr2.3:67420445-67420464 None:intergenic 50.0%
TAGCACCTGAGAGCTTGAAG+GGG + chr2.3:67421220-67421239 None:intergenic 50.0%
TCTTTACGTATGCGGTGGCA+TGG - chr2.3:67420504-67420523 MS.gene004409:CDS 50.0%
TGCAATGCCTTGCAAGGACA+AGG - chr2.3:67420435-67420454 MS.gene004409:CDS 50.0%
TGGCACGCTATTGCCAACAT+GGG - chr2.3:67420730-67420749 MS.gene004409:CDS 50.0%
TGGGATGGTTTATGCAGCTG+GGG - chr2.3:67420645-67420664 MS.gene004409:CDS 50.0%
TGTGTTTCGATGCCTCACGA+TGG - chr2.3:67420478-67420497 MS.gene004409:CDS 50.0%
TTGGCACGCTATTGCCAACA+TGG - chr2.3:67420729-67420748 MS.gene004409:CDS 50.0%
TTTGACCCCTTCAAGCTCTC+AGG - chr2.3:67421212-67421231 MS.gene004409:CDS 50.0%
! ATAACCAGGAAGCCGATTCC+TGG - chr2.3:67420983-67421002 MS.gene004409:intron 50.0%
! CATCCCATCGATTACTCCAC+TGG + chr2.3:67420632-67420651 None:intergenic 50.0%
! CGGAATCTTCTGGTTGCTGT+TGG - chr2.3:67421093-67421112 MS.gene004409:CDS 50.0%
! CGTGGATTGTCCTCTTGACT+TGG - chr2.3:67420534-67420553 MS.gene004409:CDS 50.0%
! GGATCACCTAGCTTGTGAAC+CGG + chr2.3:67420068-67420087 None:intergenic 50.0%
! TAACCAGGAAGCCGATTCCT+GGG - chr2.3:67420984-67421003 MS.gene004409:intron 50.0%
! TCCCAAGTTTAGGTTAGCGG+TGG - chr2.3:67420103-67420122 MS.gene004409:CDS 50.0%
!! TGTCCTTGCAAGGCATTGCA+GGG + chr2.3:67420435-67420454 None:intergenic 50.0%
!! TTGTCCTTGCAAGGCATTGC+AGG + chr2.3:67420436-67420455 None:intergenic 50.0%
AGGCAAAGGGGAGCCATCTA+TGG + chr2.3:67421013-67421032 None:intergenic 55.0%
CATCCCTGCAATGCCTTGCA+AGG - chr2.3:67420429-67420448 MS.gene004409:CDS 55.0%
GCGTGCCAATTCCCGCTAAT+CGG + chr2.3:67420718-67420737 None:intergenic 55.0%
GGACTTAGAGAAGGGTGGAC+TGG - chr2.3:67420892-67420911 MS.gene004409:intron 55.0%
GGATCGTAGACCTGTCCTCT+AGG + chr2.3:67420841-67420860 None:intergenic 55.0%
GGATGGTTTATGCAGCTGGG+GGG - chr2.3:67420647-67420666 MS.gene004409:CDS 55.0%
GGGATGGTTTATGCAGCTGG+GGG - chr2.3:67420646-67420665 MS.gene004409:CDS 55.0%
TGTCGTAGGCCGGAATCTTC+TGG - chr2.3:67421083-67421102 MS.gene004409:CDS 55.0%
!! CAAGCACCGGTTCACAAGCT+AGG - chr2.3:67420059-67420078 MS.gene004409:CDS 55.0%
!! CTTGCAAGGCATTGCAGGGA+TGG + chr2.3:67420431-67420450 None:intergenic 55.0%
CCTCTTGCAGACAGCCCTAC+AGG + chr2.3:67420257-67420276 None:intergenic 60.0%
CCTGTAGGGCTGTCTGCAAG+AGG - chr2.3:67420254-67420273 MS.gene004409:CDS 60.0%
GGAGCCATCTATGGCTTCCC+AGG + chr2.3:67421004-67421023 None:intergenic 60.0%
GTAGGGCTGTCTGCAAGAGG+TGG - chr2.3:67420257-67420276 MS.gene004409:CDS 60.0%
! CTTCCCAGGAATCGGCTTCC+TGG + chr2.3:67420990-67421009 None:intergenic 60.0%
!! AGGGTGGACTGGTTCAAGCG+TGG - chr2.3:67420903-67420922 MS.gene004409:intron 60.0%
CGGTGGCATGGTCTCTGACG+TGG - chr2.3:67420516-67420535 MS.gene004409:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 67420032 67421248 67420032 ID=MS.gene004409
chr2.3 mRNA 67420032 67421248 67420032 ID=MS.gene004409.t1;Parent=MS.gene004409
chr2.3 exon 67420988 67421248 67420988 ID=MS.gene004409.t1.exon1;Parent=MS.gene004409.t1
chr2.3 CDS 67420988 67421248 67420988 ID=cds.MS.gene004409.t1;Parent=MS.gene004409.t1
chr2.3 exon 67420032 67420883 67420032 ID=MS.gene004409.t1.exon2;Parent=MS.gene004409.t1
chr2.3 CDS 67420032 67420883 67420032 ID=cds.MS.gene004409.t1;Parent=MS.gene004409.t1
Gene Sequence

>MS.gene004409

ATGCAGCGTGTTAGATTTTCGTCTCAACAAGCACCGGTTCACAAGCTAGGTGATCCTCAAATGACACTATCTCCCAAGTTTAGGTTAGCGGTGGTTCAATCTAACTTGACGAGTCCGATGCCAGAGTTAGATCATTCTCTAAGAGAAGAACCCTTAATTCCGGCTTACCTGATGATGTTGCTCTTAATTGTCTTCTTCGTCTTCCGGTTCAAAGTCATTCATCCTGTAGGGCTGTCTGCAAGAGGTGGCATATGTTACTTGGTAGTAAAGAGAGGTTTTTTACTAATAGGAAGCAAATGGGTTTCAAAGATCCTTGGCTTTTTGTATTTGCATATCATAAGTGTACTGGAAAGATTCAATGGCAGGTTTTTGATCTAACTCACTTTTCTTGGCACACCATCCCTGCAATGCCTTGCAAGGACAAGGTTTGTCCTCATGGTTTTCGGTGTGTTTCGATGCCTCACGATGGTAATCTTTACGTATGCGGTGGCATGGTCTCTGACGTGGATTGTCCTCTTGACTTGGTGTTGAAATATGAGATCACGAAAAATCGTTGGACCGTGATGAATCGAATGATCAGTGCTAGGTCATTTTTTGCCAGTGGAGTAATCGATGGGATGGTTTATGCAGCTGGGGGGAATAGTACTGATCTTTATGAGCTGGATTCAGCTGAGGTATTAGATCCGATTAGCGGGAATTGGCACGCTATTGCCAACATGGGAACCAATATGGCATCCTATGATGCTGCAGTTCTGAACGGGAAACTGCTTGTAACAGAAGGATGGTTATGGCCTTTTTATGTCTCTCCTAGAGGACAGGTCTACGATCCGAGAACCAATAGCTGGGAAACTATGGCTGTTGGACTTAGAGAAGGGTGGACTGGTTCAAGCGTGGTTGTTTATGGCCACTTATTTGTTGTTTCTGAGCTCGAAAGAATGAAGCTTAAGGTTTATAACCAGGAAGCCGATTCCTGGGAAGCCATAGATGGCTCCCCTTTGCCTGAGCAAATATGCAAACCTTTTGCTGTGAATGCTTGTGATTGTCAAATTTATGTCGTAGGCCGGAATCTTCTGGTTGCTGTTGGTCATATCTCCATACTGAACCCAAAAGAAAGTTGTGAGGGGAAATGGAACTTCAGTGTTCAATGGCAAGTAATTGACGCGCCTAAAAGTTTATCCAATTTGACCCCTTCAAGCTCTCAGGTGCTATTTGCATAG
Protein sequence

>MS.gene004409.t1

MQRVRFSSQQAPVHKLGDPQMTLSPKFRLAVVQSNLTSPMPELDHSLREEPLIPAYLMMLLLIVFFVFRFKVIHPVGLSARGGICYLVFDLTHFSWHTIPAMPCKDKVCPHGFRCVSMPHDGNLYVCGGMVSDVDCPLDLVLKYEITKNRWTVMNRMISARSFFASGVIDGMVYAAGGNSTDLYELDSAEVLDPISGNWHAIANMGTNMASYDAAVLNGKLLVTEGWLWPFYVSPRGQVYDPRTNSWETMAVGLREGWTGSSVVVYGHLFVVSELERMKLKVYNQEADSWEAIDGSPLPEQICKPFAVNACDCQIYVVGRNLLVAVGHISILNPKESCEGKWNFSVQWQVIDAPKSLSNLTPSSSQVLFA