AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004413

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004413.t1 MTR_2g019230 97.037 405 12 0 1 405 1 405 0.0 820
MS.gene004413.t1 MTR_3g108860 33.880 366 214 7 42 405 7 346 1.03e-66 216
MS.gene004413.t1 MTR_4g114110 33.566 286 175 8 44 325 73 347 2.58e-42 154
MS.gene004413.t1 MTR_8g085600 31.834 289 182 8 49 333 74 351 3.32e-38 143
MS.gene004413.t1 MTR_3g073640 27.536 345 178 12 52 330 43 381 5.85e-31 124
MS.gene004413.t1 MTR_8g030940 30.031 323 205 11 51 364 24 334 5.99e-30 119
MS.gene004413.t1 MTR_2g008440 28.205 351 171 13 52 330 43 384 1.32e-29 120
MS.gene004413.t1 MTR_8g080370 30.263 304 186 9 45 334 34 325 1.53e-28 115
MS.gene004413.t1 MTR_3g085570 27.541 305 205 8 33 334 18 309 1.05e-23 101
MS.gene004413.t1 MTR_3g094850 30.272 294 176 11 52 338 9 280 8.12e-23 99.0
MS.gene004413.t1 MTR_2g094093 26.377 345 230 9 50 386 18 346 1.03e-20 93.2
MS.gene004413.t1 MTR_8g085650 30.357 224 140 4 52 262 7 227 9.53e-19 87.0
MS.gene004413.t1 MTR_1330s0010 23.120 359 226 12 12 354 80 404 4.87e-17 82.8
MS.gene004413.t1 MTR_0345s0010 23.120 359 226 12 12 354 67 391 5.32e-17 82.8
MS.gene004413.t1 MTR_0105s0170 23.120 359 226 12 12 354 80 404 1.05e-16 82.0
MS.gene004413.t1 MTR_0105s0040 23.120 359 226 12 12 354 165 489 1.19e-16 82.0
MS.gene004413.t1 MTR_0105s0130 23.120 359 226 12 12 354 67 391 1.78e-16 81.3
MS.gene004413.t1 MTR_7g095220 29.954 217 135 7 52 258 4 213 2.32e-16 80.1
MS.gene004413.t1 MTR_6g023805 24.662 296 196 9 53 333 57 340 2.87e-16 80.5
MS.gene004413.t1 MTR_0105s0020 22.563 359 228 12 12 354 67 391 4.17e-16 80.1
MS.gene004413.t1 MTR_0496s0010 21.907 388 259 13 15 378 25 392 1.27e-15 78.6
MS.gene004413.t1 MTR_4g022260 21.693 378 253 12 15 366 25 385 7.02e-14 73.2
MS.gene004413.t1 MTR_4g108280 22.191 356 241 12 44 379 23 362 2.77e-13 71.2
MS.gene004413.t1 MTR_7g029290 23.256 301 206 9 46 333 43 331 1.39e-11 66.2
MS.gene004413.t1 MTR_7g070320 32.192 146 93 5 156 299 526 667 2.48e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004413.t1 AT1G30090 68.227 406 120 2 1 405 1 398 0.0 597
MS.gene004413.t1 AT2G24540 37.433 374 217 9 35 404 11 371 3.43e-83 259
MS.gene004413.t1 AT1G55270 32.975 279 178 7 49 326 75 345 2.21e-41 151
MS.gene004413.t1 AT1G22040 30.233 344 169 13 52 330 43 380 2.96e-34 133
MS.gene004413.t1 AT1G67480 32.069 290 186 6 42 328 29 310 1.87e-33 129
MS.gene004413.t1 AT1G67480 32.069 290 186 6 42 328 29 310 1.87e-33 129
MS.gene004413.t1 AT1G67480 32.069 290 186 6 42 328 29 310 1.87e-33 129
MS.gene004413.t1 AT1G27420 26.087 322 185 9 51 372 9 277 5.22e-25 105
MS.gene004413.t1 AT1G55270 29.464 224 150 6 104 326 3 219 6.46e-22 95.9
MS.gene004413.t1 AT5G60570 27.365 296 193 7 45 332 39 320 3.98e-21 94.7
MS.gene004413.t1 AT5G60570 27.365 296 193 7 45 332 39 320 3.98e-21 94.7
MS.gene004413.t1 AT5G60570 27.365 296 193 7 45 332 39 320 3.98e-21 94.7
MS.gene004413.t1 AT3G63220 28.472 288 173 10 52 328 11 276 9.47e-20 90.1
MS.gene004413.t1 AT3G63220 28.472 288 173 10 52 328 11 276 9.47e-20 90.1
MS.gene004413.t1 AT3G63220 28.472 288 173 10 52 328 4 269 1.06e-19 90.1
MS.gene004413.t1 AT1G16250 27.530 247 162 7 49 285 5 244 1.17e-18 87.4
MS.gene004413.t1 AT1G16250 27.530 247 162 7 49 285 5 244 1.17e-18 87.4
MS.gene004413.t1 AT3G61350 22.956 318 219 11 52 361 21 320 2.70e-18 85.9
MS.gene004413.t1 AT3G61350 22.956 318 219 11 52 361 21 320 2.70e-18 85.9
MS.gene004413.t1 AT2G21950 27.303 304 194 11 52 344 20 307 2.64e-17 83.2
MS.gene004413.t1 AT4G39580 25.874 286 184 10 56 330 26 294 7.35e-15 75.9
MS.gene004413.t1 AT3G27150 24.483 290 198 7 53 333 71 348 7.71e-14 73.2
MS.gene004413.t1 AT3G27150 24.483 290 198 7 53 333 71 348 7.71e-14 73.2
MS.gene004413.t1 AT1G26930 23.602 322 212 10 52 354 71 377 5.60e-13 70.5
MS.gene004413.t1 AT1G60570 25.342 292 189 11 49 328 17 291 1.11e-12 69.3
MS.gene004413.t1 AT1G80440 29.279 222 143 7 52 262 3 221 6.26e-11 63.9

Find 120 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCCTCACAACTTTCTTT+TGG 0.176864 2.3:-67476582 None:intergenic
ATCAGGTAAGCCCGGAATTA+AGG 0.209782 2.3:-67475629 None:intergenic
GGTTCAAGCGTGGTTGTTTA+TGG 0.236597 2.3:+67476360 MS.gene004413:CDS
TAATTGTCTTCTTCGTCTTC+CGG 0.313205 2.3:+67475663 MS.gene004413:CDS
TTGTCCTTGCAAGGCATTGC+AGG 0.324010 2.3:-67475880 None:intergenic
TGTCGTAGGCCGGAATCTTC+TGG 0.330235 2.3:+67476530 MS.gene004413:CDS
AAGAAAGTTGTGAGGGGAAA+TGG 0.336256 2.3:+67476586 MS.gene004413:CDS
TGACACTATCTCCCAAGTTT+AGG 0.343062 2.3:+67475539 MS.gene004413:CDS
AGCCATAGTTTCCCAGCTAT+TGG 0.348050 2.3:-67476313 None:intergenic
TGCCAACATGGGAACCAATA+TGG 0.351045 2.3:+67476188 MS.gene004413:CDS
CTTCCCAGGAATCGGCTTCC+TGG 0.361899 2.3:-67476434 None:intergenic
AGGCAAAGGGGAGCCATCTA+TGG 0.368132 2.3:-67476457 None:intergenic
CCTCTAGGAGAGACATAAAA+AGG 0.369553 2.3:-67476270 None:intergenic
AGAGCTTGAAGGGGTCAAAT+TGG 0.369698 2.3:-67476655 None:intergenic
TAGATCCGATTAGCGGGAAT+TGG 0.370137 2.3:+67476157 MS.gene004413:CDS
AACCAATAGCTGGGAAACTA+TGG 0.377206 2.3:+67476311 MS.gene004413:CDS
GCGTGCCAATTCCCGCTAAT+CGG 0.383115 2.3:-67476162 None:intergenic
AGAGAAGAACCCTTAATTCC+GGG 0.383870 2.3:+67475619 MS.gene004413:CDS
AAGAGAAGAACCCTTAATTC+CGG 0.391873 2.3:+67475618 MS.gene004413:CDS
GTTCAGAACTGCAGCATCAT+AGG 0.399835 2.3:-67476214 None:intergenic
ATAACCAGGAAGCCGATTCC+TGG 0.405175 2.3:+67476430 MS.gene004413:CDS
GTTTCCCAGCTATTGGTTCT+CGG 0.422970 2.3:-67476306 None:intergenic
AGCATCATAGGATGCCATAT+TGG 0.428156 2.3:-67476202 None:intergenic
TCAGGTAAGCCCGGAATTAA+GGG 0.433050 2.3:-67475628 None:intergenic
TGCATATTTGCTCAGGCAAA+GGG 0.438541 2.3:-67476470 None:intergenic
GCTCGAAAGAATGAAGCTTA+AGG 0.440805 2.3:+67476404 MS.gene004413:CDS
TCACAAGCATTCACAGCAAA+AGG 0.445454 2.3:-67476495 None:intergenic
CAACAGCAACCAGAAGATTC+CGG 0.446885 2.3:-67476539 None:intergenic
TTATGTCTCTCCTAGAGGAC+AGG 0.451993 2.3:+67476275 MS.gene004413:CDS
TTTGACCCCTTCAAGCTCTC+AGG 0.453320 2.3:+67476659 MS.gene004413:CDS
AACCACCGCTAACCTAAACT+TGG 0.453592 2.3:-67475551 None:intergenic
AAAGGTTTGCATATTTGCTC+AGG 0.456311 2.3:-67476477 None:intergenic
CGTGGATTGTCCTCTTGACT+TGG 0.459145 2.3:+67475981 MS.gene004413:CDS
TTTGCATATCATAAGTGTAC+TGG 0.463348 2.3:+67475805 MS.gene004413:CDS
AAGGACAAGGTTTGTCCTCA+TGG 0.464137 2.3:+67475895 MS.gene004413:CDS
ATGATGCTGCAGTTCTGAAC+GGG 0.464281 2.3:+67476217 MS.gene004413:CDS
AAATGGGTTTCAAAGATCCT+TGG 0.469304 2.3:+67475773 MS.gene004413:CDS
ATCTATGGCTTCCCAGGAAT+CGG 0.471739 2.3:-67476442 None:intergenic
GATTCCTGGGAAGCCATAGA+TGG 0.472750 2.3:+67476444 MS.gene004413:CDS
CCTCTTGCAGACAGCCCTAC+AGG 0.472883 2.3:-67475701 None:intergenic
GTCAAATTTATGTCGTAGGC+CGG 0.477828 2.3:+67476520 MS.gene004413:CDS
ATCTCCCAAGTTTAGGTTAG+CGG 0.477981 2.3:+67475546 MS.gene004413:CDS
TACTGGAAAGATTCAATGGC+AGG 0.482203 2.3:+67475822 MS.gene004413:CDS
TTGTAACAGAAGGATGGTTA+TGG 0.483194 2.3:+67476247 MS.gene004413:CDS
CAATTAAGAGCAACATCATC+AGG 0.483657 2.3:-67475646 None:intergenic
CGGAATCTTCTGGTTGCTGT+TGG 0.483823 2.3:+67476540 MS.gene004413:CDS
GGAGCCATCTATGGCTTCCC+AGG 0.485903 2.3:-67476448 None:intergenic
TAGTACTGATCTTTATGAGC+TGG 0.486572 2.3:+67476119 MS.gene004413:CDS
ACGATCCGAGAACCAATAGC+TGG 0.496530 2.3:+67476301 MS.gene004413:CDS
TTTACTAATAGGAAGCAAAT+GGG 0.500450 2.3:+67475757 MS.gene004413:CDS
AATAGCACCTGAGAGCTTGA+AGG 0.504117 2.3:-67476666 None:intergenic
TTGCATATTTGCTCAGGCAA+AGG 0.504929 2.3:-67476471 None:intergenic
CTTGCAAGGCATTGCAGGGA+TGG 0.507543 2.3:-67475875 None:intergenic
AGCTGGGAAACTATGGCTGT+TGG 0.507613 2.3:+67476318 MS.gene004413:CDS
GATGGGATGGTTTATGCAGC+TGG 0.507844 2.3:+67476090 MS.gene004413:CDS
CAGGATGAATGACTTTGAAC+CGG 0.508558 2.3:-67475682 None:intergenic
TGCCATATTGGTTCCCATGT+TGG 0.508940 2.3:-67476190 None:intergenic
TGCAATGCCTTGCAAGGACA+AGG 0.510866 2.3:+67475882 MS.gene004413:CDS
ATGGGATGGTTTATGCAGCT+GGG 0.512009 2.3:+67476091 MS.gene004413:CDS
AGGTATTAGATCCGATTAGC+GGG 0.521082 2.3:+67476151 MS.gene004413:CDS
TTGGGAGATAGTGTCATTTG+AGG 0.521340 2.3:-67475532 None:intergenic
AATGGAACTTCAGTGTTCAA+TGG 0.527552 2.3:+67476604 MS.gene004413:CDS
AGTGTACTGGAAAGATTCAA+TGG 0.529957 2.3:+67475818 MS.gene004413:CDS
ATAGCACCTGAGAGCTTGAA+GGG 0.534517 2.3:-67476665 None:intergenic
GCTCAGAAACAACAAATAAG+TGG 0.537113 2.3:-67476383 None:intergenic
TAACCAGGAAGCCGATTCCT+GGG 0.538113 2.3:+67476431 MS.gene004413:CDS
CTTAGAGAATGATCTAACTC+TGG 0.539641 2.3:-67475598 None:intergenic
TTTGCCAGTGGAGTAATCGA+TGG 0.542803 2.3:+67476072 MS.gene004413:CDS
CAAGCACCGGTTCACAAGCT+AGG 0.543317 2.3:+67475505 MS.gene004413:CDS
TTGCCAGTGGAGTAATCGAT+GGG 0.543911 2.3:+67476073 MS.gene004413:CDS
AAGAGGTGGCATATGTTACT+TGG 0.546808 2.3:+67475718 MS.gene004413:CDS
GGACTTAGAGAAGGGTGGAC+TGG 0.550423 2.3:+67476339 MS.gene004413:CDS
GGATCACCTAGCTTGTGAAC+CGG 0.553072 2.3:-67475511 None:intergenic
TTGGCACGCTATTGCCAACA+TGG 0.553982 2.3:+67476176 MS.gene004413:CDS
GCAACATCATCAGGTAAGCC+CGG 0.556029 2.3:-67475637 None:intergenic
TCAAAGTCATTCATCCTGTA+GGG 0.557607 2.3:+67475687 MS.gene004413:CDS
GGATCGTAGACCTGTCCTCT+AGG 0.560032 2.3:-67476285 None:intergenic
CATCCCTGCAATGCCTTGCA+AGG 0.560526 2.3:+67475876 MS.gene004413:CDS
GATTGTCAAATTTATGTCGT+AGG 0.561359 2.3:+67476516 MS.gene004413:CDS
GAATGATCTAACTCTGGCAT+CGG 0.561877 2.3:-67475592 None:intergenic
CATCCCATCGATTACTCCAC+TGG 0.564791 2.3:-67476076 None:intergenic
TGTCCTTGCAAGGCATTGCA+GGG 0.566024 2.3:-67475879 None:intergenic
TCTTTACGTATGCGGTGGCA+TGG 0.567533 2.3:+67475951 MS.gene004413:CDS
AACCCAAAAGAAAGTTGTGA+GGG 0.567884 2.3:+67476579 MS.gene004413:CDS
TTCAAAGTCATTCATCCTGT+AGG 0.569327 2.3:+67475686 MS.gene004413:CDS
TATGATGCTGCAGTTCTGAA+CGG 0.569619 2.3:+67476216 MS.gene004413:CDS
GTAGGGCTGTCTGCAAGAGG+TGG 0.571680 2.3:+67475704 MS.gene004413:CDS
ATGGCTGTTGGACTTAGAGA+AGG 0.574595 2.3:+67476330 MS.gene004413:CDS
CCTGTAGGGCTGTCTGCAAG+AGG 0.578172 2.3:+67475701 MS.gene004413:CDS
CAGTGGAGTAATCGATGGGA+TGG 0.581579 2.3:+67476077 MS.gene004413:CDS
TGTTACTTGGTAGTAAAGAG+AGG 0.594306 2.3:+67475731 MS.gene004413:CDS
GGACAAACCTTGTCCTTGCA+AGG 0.597418 2.3:-67475889 None:intergenic
TGGGATGGTTTATGCAGCTG+GGG 0.601401 2.3:+67476092 MS.gene004413:CDS
GAAGCTTAAGGTTTATAACC+AGG 0.604476 2.3:+67476416 MS.gene004413:CDS
TCCCAAGTTTAGGTTAGCGG+TGG 0.605858 2.3:+67475549 MS.gene004413:CDS
TTATGAGCTGGATTCAGCTG+AGG 0.606127 2.3:+67476131 MS.gene004413:CDS
TATTTCAACACCAAGTCAAG+AGG 0.607388 2.3:-67475991 None:intergenic
CGGTGGCATGGTCTCTGACG+TGG 0.609464 2.3:+67475963 MS.gene004413:CDS
GAGGTATTAGATCCGATTAG+CGG 0.618113 2.3:+67476150 MS.gene004413:CDS
GGGAAACTGCTTGTAACAGA+AGG 0.619168 2.3:+67476237 MS.gene004413:CDS
CGATCCGAGAACCAATAGCT+GGG 0.621734 2.3:+67476302 MS.gene004413:CDS
TGGCTGTTGGACTTAGAGAA+GGG 0.623432 2.3:+67476331 MS.gene004413:CDS
AACTGCTTGTAACAGAAGGA+TGG 0.627353 2.3:+67476241 MS.gene004413:CDS
TGGCACGCTATTGCCAACAT+GGG 0.627378 2.3:+67476177 MS.gene004413:CDS
TGAATCGAATGATCAGTGCT+AGG 0.644133 2.3:+67476043 MS.gene004413:CDS
CTGTTGGACTTAGAGAAGGG+TGG 0.655252 2.3:+67476334 MS.gene004413:CDS
GGTAATCTTTACGTATGCGG+TGG 0.656082 2.3:+67475946 MS.gene004413:CDS
TGTGTTTCGATGCCTCACGA+TGG 0.656289 2.3:+67475925 MS.gene004413:CDS
ACCACCGCTAACCTAAACTT+GGG 0.656767 2.3:-67475550 None:intergenic
GCATATTTGCTCAGGCAAAG+GGG 0.660049 2.3:-67476469 None:intergenic
ACGTAAAGATTACCATCGTG+AGG 0.668276 2.3:-67475937 None:intergenic
AGGGTGGACTGGTTCAAGCG+TGG 0.672213 2.3:+67476350 MS.gene004413:CDS
GGGATGGTTTATGCAGCTGG+GGG 0.673599 2.3:+67476093 MS.gene004413:CDS
GAACCCAAAAGAAAGTTGTG+AGG 0.676488 2.3:+67476578 MS.gene004413:CDS
ACTGATCATTCGATTCATCA+CGG 0.677591 2.3:-67476037 None:intergenic
GGATGGTTTATGCAGCTGGG+GGG 0.678556 2.3:+67476094 MS.gene004413:CDS
ACCCAAAAGAAAGTTGTGAG+GGG 0.696628 2.3:+67476580 MS.gene004413:CDS
TAGCACCTGAGAGCTTGAAG+GGG 0.706757 2.3:-67476664 None:intergenic
GATGGTAATCTTTACGTATG+CGG 0.716864 2.3:+67475943 MS.gene004413:CDS
GAAACACACCGAAAACCATG+AGG 0.732405 2.3:-67475910 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTTACTAATAGGAAGCAAAT+GGG + chr2.3:67475757-67475776 MS.gene004413:CDS 25.0%
!! GTCAAATTGGATAAACTTTT+AGG - chr2.3:67476645-67476664 None:intergenic 25.0%
!! TTTTACTAATAGGAAGCAAA+TGG + chr2.3:67475756-67475775 MS.gene004413:CDS 25.0%
!!! AAGAGAGGTTTTTTACTAAT+AGG + chr2.3:67475746-67475765 MS.gene004413:CDS 25.0%
GATTGTCAAATTTATGTCGT+AGG + chr2.3:67476516-67476535 MS.gene004413:CDS 30.0%
TATGCAAATACAAAAAGCCA+AGG - chr2.3:67475793-67475812 None:intergenic 30.0%
TTTGCATATCATAAGTGTAC+TGG + chr2.3:67475805-67475824 MS.gene004413:CDS 30.0%
!! TTGATCTAACTCACTTTTCT+TGG + chr2.3:67475848-67475867 MS.gene004413:CDS 30.0%
AAAGGTTTGCATATTTGCTC+AGG - chr2.3:67476480-67476499 None:intergenic 35.0%
AACCCAAAAGAAAGTTGTGA+GGG + chr2.3:67476579-67476598 MS.gene004413:CDS 35.0%
AAGAGAAGAACCCTTAATTC+CGG + chr2.3:67475618-67475637 MS.gene004413:CDS 35.0%
AATGGAACTTCAGTGTTCAA+TGG + chr2.3:67476604-67476623 MS.gene004413:CDS 35.0%
ACTGATCATTCGATTCATCA+CGG - chr2.3:67476040-67476059 None:intergenic 35.0%
AGTGTACTGGAAAGATTCAA+TGG + chr2.3:67475818-67475837 MS.gene004413:CDS 35.0%
ATGAGATCACGAAAAATCGT+TGG + chr2.3:67476013-67476032 MS.gene004413:CDS 35.0%
CAATTAAGAGCAACATCATC+AGG - chr2.3:67475649-67475668 None:intergenic 35.0%
CTTAGAGAATGATCTAACTC+TGG - chr2.3:67475601-67475620 None:intergenic 35.0%
GAAGCTTAAGGTTTATAACC+AGG + chr2.3:67476416-67476435 MS.gene004413:CDS 35.0%
GATGGTAATCTTTACGTATG+CGG + chr2.3:67475943-67475962 MS.gene004413:CDS 35.0%
GCTCAGAAACAACAAATAAG+TGG - chr2.3:67476386-67476405 None:intergenic 35.0%
TAATTGTCTTCTTCGTCTTC+CGG + chr2.3:67475663-67475682 MS.gene004413:CDS 35.0%
TATTTCAACACCAAGTCAAG+AGG - chr2.3:67475994-67476013 None:intergenic 35.0%
TCAAAGTCATTCATCCTGTA+GGG + chr2.3:67475687-67475706 MS.gene004413:CDS 35.0%
TTCAAAGTCATTCATCCTGT+AGG + chr2.3:67475686-67475705 MS.gene004413:CDS 35.0%
TTGTAACAGAAGGATGGTTA+TGG + chr2.3:67476247-67476266 MS.gene004413:CDS 35.0%
! AAATGGGTTTCAAAGATCCT+TGG + chr2.3:67475773-67475792 MS.gene004413:CDS 35.0%
! TGTTACTTGGTAGTAAAGAG+AGG + chr2.3:67475731-67475750 MS.gene004413:CDS 35.0%
!! TAGTACTGATCTTTATGAGC+TGG + chr2.3:67476119-67476138 MS.gene004413:CDS 35.0%
!!! ACTTTCTTTTGGGTTCAGTA+TGG - chr2.3:67476574-67476593 None:intergenic 35.0%
AACCAATAGCTGGGAAACTA+TGG + chr2.3:67476311-67476330 MS.gene004413:CDS 40.0%
AACTGCTTGTAACAGAAGGA+TGG + chr2.3:67476241-67476260 MS.gene004413:CDS 40.0%
AAGAAAGTTGTGAGGGGAAA+TGG + chr2.3:67476586-67476605 MS.gene004413:CDS 40.0%
AAGAGGTGGCATATGTTACT+TGG + chr2.3:67475718-67475737 MS.gene004413:CDS 40.0%
ACCCAAAAGAAAGTTGTGAG+GGG + chr2.3:67476580-67476599 MS.gene004413:CDS 40.0%
ACGTAAAGATTACCATCGTG+AGG - chr2.3:67475940-67475959 None:intergenic 40.0%
AGAGAAGAACCCTTAATTCC+GGG + chr2.3:67475619-67475638 MS.gene004413:CDS 40.0%
AGCATCATAGGATGCCATAT+TGG - chr2.3:67476205-67476224 None:intergenic 40.0%
AGGTATTAGATCCGATTAGC+GGG + chr2.3:67476151-67476170 MS.gene004413:CDS 40.0%
CAGGATGAATGACTTTGAAC+CGG - chr2.3:67475685-67475704 None:intergenic 40.0%
GAACCCAAAAGAAAGTTGTG+AGG + chr2.3:67476578-67476597 MS.gene004413:CDS 40.0%
GAATGATCTAACTCTGGCAT+CGG - chr2.3:67475595-67475614 None:intergenic 40.0%
GCTCGAAAGAATGAAGCTTA+AGG + chr2.3:67476404-67476423 MS.gene004413:CDS 40.0%
GTCAAATTTATGTCGTAGGC+CGG + chr2.3:67476520-67476539 MS.gene004413:CDS 40.0%
TACTGGAAAGATTCAATGGC+AGG + chr2.3:67475822-67475841 MS.gene004413:CDS 40.0%
TCACAAGCATTCACAGCAAA+AGG - chr2.3:67476498-67476517 None:intergenic 40.0%
TGAATCGAATGATCAGTGCT+AGG + chr2.3:67476043-67476062 MS.gene004413:CDS 40.0%
TGACACTATCTCCCAAGTTT+AGG + chr2.3:67475539-67475558 MS.gene004413:CDS 40.0%
TGCATATTTGCTCAGGCAAA+GGG - chr2.3:67476473-67476492 None:intergenic 40.0%
TTGCATATTTGCTCAGGCAA+AGG - chr2.3:67476474-67476493 None:intergenic 40.0%
! AGGTTTGTCCTCATGGTTTT+CGG + chr2.3:67475902-67475921 MS.gene004413:CDS 40.0%
! ATCTCCCAAGTTTAGGTTAG+CGG + chr2.3:67475546-67475565 MS.gene004413:CDS 40.0%
! ATTTTCGTCTCAACAAGCAC+CGG + chr2.3:67475492-67475511 MS.gene004413:CDS 40.0%
! CCTCTAGGAGAGACATAAAA+AGG - chr2.3:67476273-67476292 None:intergenic 40.0%
! CCTTTTTATGTCTCTCCTAG+AGG + chr2.3:67476270-67476289 MS.gene004413:CDS 40.0%
! GAGGTATTAGATCCGATTAG+CGG + chr2.3:67476150-67476169 MS.gene004413:CDS 40.0%
! TCCCCTCACAACTTTCTTTT+GGG - chr2.3:67476584-67476603 None:intergenic 40.0%
! TTCCCCTCACAACTTTCTTT+TGG - chr2.3:67476585-67476604 None:intergenic 40.0%
!! TATGATGCTGCAGTTCTGAA+CGG + chr2.3:67476216-67476235 MS.gene004413:CDS 40.0%
!! TTGGGAGATAGTGTCATTTG+AGG - chr2.3:67475535-67475554 None:intergenic 40.0%
AACCACCGCTAACCTAAACT+TGG - chr2.3:67475554-67475573 None:intergenic 45.0%
AAGGACAAGGTTTGTCCTCA+TGG + chr2.3:67475895-67475914 MS.gene004413:CDS 45.0%
AATAGCACCTGAGAGCTTGA+AGG - chr2.3:67476669-67476688 None:intergenic 45.0%
ACCACCGCTAACCTAAACTT+GGG - chr2.3:67475553-67475572 None:intergenic 45.0%
AGAGCTTGAAGGGGTCAAAT+TGG - chr2.3:67476658-67476677 None:intergenic 45.0%
AGCCATAGTTTCCCAGCTAT+TGG - chr2.3:67476316-67476335 None:intergenic 45.0%
ATAGCACCTGAGAGCTTGAA+GGG - chr2.3:67476668-67476687 None:intergenic 45.0%
ATCAGGTAAGCCCGGAATTA+AGG - chr2.3:67475632-67475651 None:intergenic 45.0%
ATCTATGGCTTCCCAGGAAT+CGG - chr2.3:67476445-67476464 None:intergenic 45.0%
ATGGCTGTTGGACTTAGAGA+AGG + chr2.3:67476330-67476349 MS.gene004413:CDS 45.0%
ATGGGATGGTTTATGCAGCT+GGG + chr2.3:67476091-67476110 MS.gene004413:CDS 45.0%
CAACAGCAACCAGAAGATTC+CGG - chr2.3:67476542-67476561 None:intergenic 45.0%
GAAACACACCGAAAACCATG+AGG - chr2.3:67475913-67475932 None:intergenic 45.0%
GCATATTTGCTCAGGCAAAG+GGG - chr2.3:67476472-67476491 None:intergenic 45.0%
GGGAAACTGCTTGTAACAGA+AGG + chr2.3:67476237-67476256 MS.gene004413:CDS 45.0%
GGTAATCTTTACGTATGCGG+TGG + chr2.3:67475946-67475965 MS.gene004413:CDS 45.0%
GGTTCAAGCGTGGTTGTTTA+TGG + chr2.3:67476360-67476379 MS.gene004413:CDS 45.0%
GTTCAGAACTGCAGCATCAT+AGG - chr2.3:67476217-67476236 None:intergenic 45.0%
TAGATCCGATTAGCGGGAAT+TGG + chr2.3:67476157-67476176 MS.gene004413:CDS 45.0%
TCAGGTAAGCCCGGAATTAA+GGG - chr2.3:67475631-67475650 None:intergenic 45.0%
TGCCAACATGGGAACCAATA+TGG + chr2.3:67476188-67476207 MS.gene004413:CDS 45.0%
TGGCTGTTGGACTTAGAGAA+GGG + chr2.3:67476331-67476350 MS.gene004413:CDS 45.0%
TTATGAGCTGGATTCAGCTG+AGG + chr2.3:67476131-67476150 MS.gene004413:CDS 45.0%
TTATGTCTCTCCTAGAGGAC+AGG + chr2.3:67476275-67476294 MS.gene004413:CDS 45.0%
TTGCCAGTGGAGTAATCGAT+GGG + chr2.3:67476073-67476092 MS.gene004413:CDS 45.0%
TTTGCCAGTGGAGTAATCGA+TGG + chr2.3:67476072-67476091 MS.gene004413:CDS 45.0%
!! ATGATGCTGCAGTTCTGAAC+GGG + chr2.3:67476217-67476236 MS.gene004413:CDS 45.0%
!! GTTTCCCAGCTATTGGTTCT+CGG - chr2.3:67476309-67476328 None:intergenic 45.0%
!! TGCCATATTGGTTCCCATGT+TGG - chr2.3:67476193-67476212 None:intergenic 45.0%
!!! GCTAGGTCATTTTTTGCCAG+TGG + chr2.3:67476060-67476079 MS.gene004413:CDS 45.0%
ACGATCCGAGAACCAATAGC+TGG + chr2.3:67476301-67476320 MS.gene004413:CDS 50.0%
AGCTGGGAAACTATGGCTGT+TGG + chr2.3:67476318-67476337 MS.gene004413:CDS 50.0%
CAGTGGAGTAATCGATGGGA+TGG + chr2.3:67476077-67476096 MS.gene004413:CDS 50.0%
CGATCCGAGAACCAATAGCT+GGG + chr2.3:67476302-67476321 MS.gene004413:CDS 50.0%
CTGTTGGACTTAGAGAAGGG+TGG + chr2.3:67476334-67476353 MS.gene004413:CDS 50.0%
GATGGGATGGTTTATGCAGC+TGG + chr2.3:67476090-67476109 MS.gene004413:CDS 50.0%
GATTCCTGGGAAGCCATAGA+TGG + chr2.3:67476444-67476463 MS.gene004413:CDS 50.0%
GCAACATCATCAGGTAAGCC+CGG - chr2.3:67475640-67475659 None:intergenic 50.0%
GGACAAACCTTGTCCTTGCA+AGG - chr2.3:67475892-67475911 None:intergenic 50.0%
TAGCACCTGAGAGCTTGAAG+GGG - chr2.3:67476667-67476686 None:intergenic 50.0%
TCTTTACGTATGCGGTGGCA+TGG + chr2.3:67475951-67475970 MS.gene004413:CDS 50.0%
TGCAATGCCTTGCAAGGACA+AGG + chr2.3:67475882-67475901 MS.gene004413:CDS 50.0%
TGGCACGCTATTGCCAACAT+GGG + chr2.3:67476177-67476196 MS.gene004413:CDS 50.0%
TGGGATGGTTTATGCAGCTG+GGG + chr2.3:67476092-67476111 MS.gene004413:CDS 50.0%
TGTGTTTCGATGCCTCACGA+TGG + chr2.3:67475925-67475944 MS.gene004413:CDS 50.0%
TTGGCACGCTATTGCCAACA+TGG + chr2.3:67476176-67476195 MS.gene004413:CDS 50.0%
TTTGACCCCTTCAAGCTCTC+AGG + chr2.3:67476659-67476678 MS.gene004413:CDS 50.0%
! ATAACCAGGAAGCCGATTCC+TGG + chr2.3:67476430-67476449 MS.gene004413:CDS 50.0%
! CATCCCATCGATTACTCCAC+TGG - chr2.3:67476079-67476098 None:intergenic 50.0%
! CGGAATCTTCTGGTTGCTGT+TGG + chr2.3:67476540-67476559 MS.gene004413:CDS 50.0%
! CGTGGATTGTCCTCTTGACT+TGG + chr2.3:67475981-67476000 MS.gene004413:CDS 50.0%
! GGATCACCTAGCTTGTGAAC+CGG - chr2.3:67475514-67475533 None:intergenic 50.0%
! TAACCAGGAAGCCGATTCCT+GGG + chr2.3:67476431-67476450 MS.gene004413:CDS 50.0%
! TCCCAAGTTTAGGTTAGCGG+TGG + chr2.3:67475549-67475568 MS.gene004413:CDS 50.0%
!! TGTCCTTGCAAGGCATTGCA+GGG - chr2.3:67475882-67475901 None:intergenic 50.0%
!! TTGTCCTTGCAAGGCATTGC+AGG - chr2.3:67475883-67475902 None:intergenic 50.0%
AGGCAAAGGGGAGCCATCTA+TGG - chr2.3:67476460-67476479 None:intergenic 55.0%
CATCCCTGCAATGCCTTGCA+AGG + chr2.3:67475876-67475895 MS.gene004413:CDS 55.0%
GCGTGCCAATTCCCGCTAAT+CGG - chr2.3:67476165-67476184 None:intergenic 55.0%
GGACTTAGAGAAGGGTGGAC+TGG + chr2.3:67476339-67476358 MS.gene004413:CDS 55.0%
GGATCGTAGACCTGTCCTCT+AGG - chr2.3:67476288-67476307 None:intergenic 55.0%
GGATGGTTTATGCAGCTGGG+GGG + chr2.3:67476094-67476113 MS.gene004413:CDS 55.0%
GGGATGGTTTATGCAGCTGG+GGG + chr2.3:67476093-67476112 MS.gene004413:CDS 55.0%
TGTCGTAGGCCGGAATCTTC+TGG + chr2.3:67476530-67476549 MS.gene004413:CDS 55.0%
!! CAAGCACCGGTTCACAAGCT+AGG + chr2.3:67475505-67475524 MS.gene004413:CDS 55.0%
!! CTTGCAAGGCATTGCAGGGA+TGG - chr2.3:67475878-67475897 None:intergenic 55.0%
CCTCTTGCAGACAGCCCTAC+AGG - chr2.3:67475704-67475723 None:intergenic 60.0%
CCTGTAGGGCTGTCTGCAAG+AGG + chr2.3:67475701-67475720 MS.gene004413:CDS 60.0%
GGAGCCATCTATGGCTTCCC+AGG - chr2.3:67476451-67476470 None:intergenic 60.0%
GTAGGGCTGTCTGCAAGAGG+TGG + chr2.3:67475704-67475723 MS.gene004413:CDS 60.0%
! CTTCCCAGGAATCGGCTTCC+TGG - chr2.3:67476437-67476456 None:intergenic 60.0%
!! AGGGTGGACTGGTTCAAGCG+TGG + chr2.3:67476350-67476369 MS.gene004413:CDS 60.0%
CGGTGGCATGGTCTCTGACG+TGG + chr2.3:67475963-67475982 MS.gene004413:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 67475478 67476695 67475478 ID=MS.gene004413
chr2.3 mRNA 67475478 67476695 67475478 ID=MS.gene004413.t1;Parent=MS.gene004413
chr2.3 exon 67475478 67476695 67475478 ID=MS.gene004413.t1.exon1;Parent=MS.gene004413.t1
chr2.3 CDS 67475478 67476695 67475478 ID=cds.MS.gene004413.t1;Parent=MS.gene004413.t1
Gene Sequence

>MS.gene004413

ATGCAGCGTGTTAGATTTTCGTCTCAACAAGCACCGGTTCACAAGCTAGGTGATCCTCAAATGACACTATCTCCCAAGTTTAGGTTAGCGGTGGTTCAATCTAACTTGACGAGTCCGATGCCAGAGTTAGATCATTCTCTAAGAGAAGAACCCTTAATTCCGGGCTTACCTGATGATGTTGCTCTTAATTGTCTTCTTCGTCTTCCGGTTCAAAGTCATTCATCCTGTAGGGCTGTCTGCAAGAGGTGGCATATGTTACTTGGTAGTAAAGAGAGGTTTTTTACTAATAGGAAGCAAATGGGTTTCAAAGATCCTTGGCTTTTTGTATTTGCATATCATAAGTGTACTGGAAAGATTCAATGGCAGGTTTTTGATCTAACTCACTTTTCTTGGCACACCATCCCTGCAATGCCTTGCAAGGACAAGGTTTGTCCTCATGGTTTTCGGTGTGTTTCGATGCCTCACGATGGTAATCTTTACGTATGCGGTGGCATGGTCTCTGACGTGGATTGTCCTCTTGACTTGGTGTTGAAATATGAGATCACGAAAAATCGTTGGACCGTGATGAATCGAATGATCAGTGCTAGGTCATTTTTTGCCAGTGGAGTAATCGATGGGATGGTTTATGCAGCTGGGGGGAATAGTACTGATCTTTATGAGCTGGATTCAGCTGAGGTATTAGATCCGATTAGCGGGAATTGGCACGCTATTGCCAACATGGGAACCAATATGGCATCCTATGATGCTGCAGTTCTGAACGGGAAACTGCTTGTAACAGAAGGATGGTTATGGCCTTTTTATGTCTCTCCTAGAGGACAGGTCTACGATCCGAGAACCAATAGCTGGGAAACTATGGCTGTTGGACTTAGAGAAGGGTGGACTGGTTCAAGCGTGGTTGTTTATGGCCACTTATTTGTTGTTTCTGAGCTCGAAAGAATGAAGCTTAAGGTTTATAACCAGGAAGCCGATTCCTGGGAAGCCATAGATGGCTCCCCTTTGCCTGAGCAAATATGCAAACCTTTTGCTGTGAATGCTTGTGATTGTCAAATTTATGTCGTAGGCCGGAATCTTCTGGTTGCTGTTGGTCATATCTCCATACTGAACCCAAAAGAAAGTTGTGAGGGGAAATGGAACTTCAGTGTTCAATGGCAAGTAATTGACGCGCCTAAAAGTTTATCCAATTTGACCCCTTCAAGCTCTCAGGTGCTATTTGCATAG
Protein sequence

>MS.gene004413.t1

MQRVRFSSQQAPVHKLGDPQMTLSPKFRLAVVQSNLTSPMPELDHSLREEPLIPGLPDDVALNCLLRLPVQSHSSCRAVCKRWHMLLGSKERFFTNRKQMGFKDPWLFVFAYHKCTGKIQWQVFDLTHFSWHTIPAMPCKDKVCPHGFRCVSMPHDGNLYVCGGMVSDVDCPLDLVLKYEITKNRWTVMNRMISARSFFASGVIDGMVYAAGGNSTDLYELDSAEVLDPISGNWHAIANMGTNMASYDAAVLNGKLLVTEGWLWPFYVSPRGQVYDPRTNSWETMAVGLREGWTGSSVVVYGHLFVVSELERMKLKVYNQEADSWEAIDGSPLPEQICKPFAVNACDCQIYVVGRNLLVAVGHISILNPKESCEGKWNFSVQWQVIDAPKSLSNLTPSSSQVLFA