Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004566.t1 | XP_013463250.1 | 98 | 953 | 14 | 1 | 8 | 960 | 133 | 1080 | 0.00E+00 | 1908.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004566.t1 | Q8RXK8 | 76.4 | 954 | 215 | 5 | 8 | 960 | 146 | 1090 | 0.0e+00 | 1536.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004566.t1 | A0A072V611 | 98.0 | 953 | 14 | 1 | 8 | 960 | 133 | 1080 | 0.0e+00 | 1908.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene26744 | MS.gene004566 | PPI |
MS.gene063765 | MS.gene004566 | PPI |
MS.gene063767 | MS.gene004566 | PPI |
MS.gene030204 | MS.gene004566 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004566.t1 | MTR_2g436760 | 98.006 | 953 | 14 | 1 | 8 | 960 | 133 | 1080 | 0.0 | 1944 |
MS.gene004566.t1 | MTR_4g076850 | 26.691 | 828 | 499 | 24 | 6 | 775 | 38 | 815 | 4.45e-74 | 266 |
MS.gene004566.t1 | MTR_6g027620 | 26.000 | 800 | 461 | 18 | 4 | 776 | 97 | 792 | 7.36e-66 | 240 |
MS.gene004566.t1 | MTR_1g101620 | 23.886 | 561 | 357 | 18 | 290 | 802 | 358 | 896 | 2.23e-29 | 127 |
MS.gene004566.t1 | MTR_1g101620 | 27.848 | 158 | 111 | 1 | 10 | 164 | 132 | 289 | 2.12e-13 | 75.1 |
MS.gene004566.t1 | MTR_4g132500 | 30.263 | 152 | 91 | 2 | 10 | 160 | 114 | 251 | 4.63e-13 | 73.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004566.t1 | AT5G49030 | 76.520 | 954 | 214 | 5 | 8 | 960 | 332 | 1276 | 0.0 | 1521 |
MS.gene004566.t1 | AT5G49030 | 76.520 | 954 | 214 | 5 | 8 | 960 | 146 | 1090 | 0.0 | 1514 |
MS.gene004566.t1 | AT5G49030 | 79.705 | 813 | 157 | 3 | 8 | 819 | 146 | 951 | 0.0 | 1340 |
MS.gene004566.t1 | AT4G10320 | 27.027 | 814 | 507 | 20 | 10 | 775 | 42 | 816 | 1.77e-78 | 279 |
MS.gene004566.t1 | AT5G16715 | 26.165 | 558 | 344 | 14 | 296 | 833 | 318 | 827 | 4.72e-43 | 170 |
MS.gene004566.t1 | AT5G16715 | 31.797 | 217 | 129 | 6 | 4 | 215 | 94 | 296 | 1.22e-19 | 95.5 |
MS.gene004566.t1 | AT1G14610 | 24.119 | 539 | 346 | 14 | 290 | 782 | 396 | 917 | 5.49e-32 | 135 |
MS.gene004566.t1 | AT1G14610 | 29.487 | 156 | 107 | 1 | 10 | 162 | 170 | 325 | 2.27e-15 | 81.6 |
MS.gene004566.t1 | AT4G04350 | 30.263 | 152 | 91 | 3 | 10 | 160 | 117 | 254 | 2.03e-11 | 68.6 |
Find 223 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGAGACTCCCTTGGCTTTC+CGG | 0.179744 | 2.2:-52422234 | MS.gene004566:CDS |
CAAATGGCCAAACACAAATT+TGG | 0.180556 | 2.2:+52425808 | None:intergenic |
CAAATTTGTGTTTGGCCATT+TGG | 0.194064 | 2.2:-52425807 | MS.gene004566:CDS |
CTTTACTGTTACCCTGAATT+AGG | 0.221861 | 2.2:+52417730 | None:intergenic |
GGCCTACCAATTGAATTAAA+AGG | 0.233183 | 2.2:-52428225 | MS.gene004566:intron |
TTTCAATATACAACCGAATA+TGG | 0.247537 | 2.2:-52419437 | MS.gene004566:CDS |
ACATCCATCCAGTAGATAAT+AGG | 0.247871 | 2.2:-52423785 | MS.gene004566:CDS |
ACCATGCATCACTACCCTTT+TGG | 0.253122 | 2.2:+52422711 | None:intergenic |
ATCATCTACTGGAGATAGTA+TGG | 0.254048 | 2.2:+52423644 | None:intergenic |
ATGCTATTGGCGGTGTAAAA+TGG | 0.260951 | 2.2:-52423294 | MS.gene004566:CDS |
TGCCAACGTTAGAGGCAAAA+TGG | 0.262283 | 2.2:-52424021 | MS.gene004566:CDS |
AGCTGATGTCCTGCGGCTTT+GGG | 0.271747 | 2.2:-52420486 | MS.gene004566:CDS |
CACTGCTGTTGTGAAATATT+TGG | 0.280637 | 2.2:-52423559 | MS.gene004566:CDS |
GAGCTGATGTCCTGCGGCTT+TGG | 0.284206 | 2.2:-52420487 | MS.gene004566:CDS |
GTCAAATATCGGAAGTTTAC+CGG | 0.286320 | 2.2:-52420412 | MS.gene004566:CDS |
GTCTGCAGCGCTTTGGAGTA+TGG | 0.294011 | 2.2:-52427314 | MS.gene004566:intron |
AGAACTTGTGCCAACGTTAG+AGG | 0.303488 | 2.2:-52424029 | MS.gene004566:CDS |
AAGGCTGTTGGGCTCTGATT+TGG | 0.316359 | 2.2:-52423975 | MS.gene004566:CDS |
TTCAGCAAAGGAACCATATT+CGG | 0.317688 | 2.2:+52419424 | None:intergenic |
TAGTGGTGAATGCCTAATTC+AGG | 0.321767 | 2.2:-52417742 | MS.gene004566:CDS |
GGGATTCCGTGAAGCTTCTA+TGG | 0.322574 | 2.2:-52423317 | MS.gene004566:CDS |
ATGCCAACATCTTTCACATT+TGG | 0.342388 | 2.2:+52417677 | None:intergenic |
AGCACTTGCAATTCTGAAAA+TGG | 0.348750 | 2.2:+52425864 | None:intergenic |
TGAGTTAAAACAGAAGAATA+TGG | 0.349534 | 2.2:+52420709 | None:intergenic |
TTTAGTGGACTTGATGTTCT+TGG | 0.350017 | 2.2:-52423591 | MS.gene004566:CDS |
ATGGATGTGTGGTTTGATTC+AGG | 0.350370 | 2.2:-52422611 | MS.gene004566:intron |
AGAATTCCCAAATTTGTGTT+TGG | 0.351444 | 2.2:-52425815 | MS.gene004566:CDS |
TCTGTTGCTCTAAATATTGT+TGG | 0.359250 | 2.2:+52423361 | None:intergenic |
TCTTGCTGAAGCCGAGTTAG+AGG | 0.363187 | 2.2:-52426861 | MS.gene004566:intron |
GGGAATGTCCGGTCGTAGTT+GGG | 0.365307 | 2.2:-52423764 | MS.gene004566:CDS |
TCAGCTAAGTGGGGCAATAT+TGG | 0.367888 | 2.2:+52419482 | None:intergenic |
ACCTGGGCAGCTTCATATTC+CGG | 0.369013 | 2.2:+52427258 | None:intergenic |
GGATATTATAAATCGTTATA+AGG | 0.371113 | 2.2:-52428443 | MS.gene004566:intron |
ACGAACTTCCGAGGATTGAT+AGG | 0.373909 | 2.2:-52420183 | MS.gene004566:CDS |
GGAAGTTTACCGGAAGTTAC+GGG | 0.374435 | 2.2:-52420402 | MS.gene004566:CDS |
TTTAACTCATGGATTTGTAT+TGG | 0.376110 | 2.2:-52420695 | MS.gene004566:CDS |
CCGGCAGACTTGTATCTTGA+AGG | 0.377749 | 2.2:-52422215 | MS.gene004566:CDS |
CCCAACATATAATCGATCTT+TGG | 0.380587 | 2.2:+52419760 | None:intergenic |
TCAAATTCTTCGTCAAATAT+CGG | 0.386996 | 2.2:-52420423 | MS.gene004566:CDS |
GTGAACCTTTGCATCTAAAC+TGG | 0.388723 | 2.2:+52418312 | None:intergenic |
ATTAGGCATTCACCACTATA+TGG | 0.390707 | 2.2:+52417747 | None:intergenic |
TATTCGGTTGTATATTGAAA+TGG | 0.391154 | 2.2:+52419440 | None:intergenic |
TGTAAAATGGGTTCCACCTC+AGG | 0.393018 | 2.2:-52423281 | MS.gene004566:intron |
CACAGTTCAATTTCTTCAGC+AGG | 0.397454 | 2.2:+52419350 | None:intergenic |
GAAGAAGCTGGGCAGTTTAG+TGG | 0.398281 | 2.2:-52423606 | MS.gene004566:CDS |
CATCCATCCAGTAGATAATA+GGG | 0.398599 | 2.2:-52423784 | MS.gene004566:CDS |
AAATGGCCAAACACAAATTT+GGG | 0.402978 | 2.2:+52425809 | None:intergenic |
AATTTGTATTCGAATCTAGA+TGG | 0.406223 | 2.2:-52419403 | MS.gene004566:CDS |
GTCAGCTATTATAGCCCAAA+AGG | 0.408308 | 2.2:-52422726 | MS.gene004566:intron |
CTATCTCCAGTAGATGATAA+TGG | 0.408603 | 2.2:-52423639 | MS.gene004566:CDS |
AGTAGGTCACTCGGCATTAG+AGG | 0.409404 | 2.2:+52425841 | None:intergenic |
GGAAAATTCACTGAAGAAGC+TGG | 0.411974 | 2.2:-52423618 | MS.gene004566:CDS |
CCAAAGATCGATTATATGTT+GGG | 0.412929 | 2.2:-52419760 | MS.gene004566:intron |
CGGAAGTTTACCGGAAGTTA+CGG | 0.414153 | 2.2:-52420403 | MS.gene004566:CDS |
GATTATATTACAACAGAAAC+AGG | 0.417354 | 2.2:-52423738 | MS.gene004566:CDS |
TTCCGGATCTAGAGTAAGAT+AGG | 0.419289 | 2.2:+52427275 | None:intergenic |
GCCAACGTTAGAGGCAAAAT+GGG | 0.423649 | 2.2:-52424020 | MS.gene004566:CDS |
TGAAAATTTGTCACTCATCA+TGG | 0.429326 | 2.2:-52423535 | MS.gene004566:CDS |
GGCTGAGATTCTTCCTTCAC+TGG | 0.431602 | 2.2:-52417793 | MS.gene004566:CDS |
AGGGAATGTCCGGTCGTAGT+TGG | 0.431863 | 2.2:-52423765 | MS.gene004566:CDS |
GCCTTTGCTCTCAACTTCAA+TGG | 0.435628 | 2.2:+52427558 | None:intergenic |
TTAAAGTTCCCCGTAACTTC+CGG | 0.441014 | 2.2:+52420393 | None:intergenic |
TATGCTTCAACACATTGATC+AGG | 0.442126 | 2.2:-52428545 | MS.gene004566:CDS |
TAAAGCTGCTGAATATGAAA+AGG | 0.444367 | 2.2:-52422645 | MS.gene004566:CDS |
GACGAGGGACTCCAGTGAAC+AGG | 0.448070 | 2.2:+52426893 | None:intergenic |
AATTTGGGAATTCTTGTAGT+AGG | 0.448385 | 2.2:+52425824 | None:intergenic |
CAATGGTTTGCATCGGTTGA+GGG | 0.450860 | 2.2:-52423337 | MS.gene004566:CDS |
GCTTTATCACGATAATTAGC+TGG | 0.451049 | 2.2:+52422662 | None:intergenic |
ATTGTCTCTTCATTCATAAG+AGG | 0.454350 | 2.2:+52423026 | None:intergenic |
TATAGCCTTTCAAGGCCATC+TGG | 0.456459 | 2.2:+52426933 | None:intergenic |
AATGAACATGACTCTTCATC+TGG | 0.463018 | 2.2:-52424121 | MS.gene004566:CDS |
GACCATGTCCAGGAGCTGTA+TGG | 0.465784 | 2.2:+52423703 | None:intergenic |
GTTGCTGTTCAGATGCCCTC+TGG | 0.466928 | 2.2:-52417591 | MS.gene004566:CDS |
GCAATGGTTTGCATCGGTTG+AGG | 0.467108 | 2.2:-52423338 | MS.gene004566:CDS |
TCTCAGGAAGCACCTGCATA+TGG | 0.467513 | 2.2:-52420509 | MS.gene004566:intron |
AACAACATCGTATTCAAGCT+TGG | 0.470716 | 2.2:+52424159 | None:intergenic |
AACACAAGTATCCGTATGAT+TGG | 0.471345 | 2.2:-52423396 | MS.gene004566:CDS |
GCCAAAGATCGATTATATGT+TGG | 0.471553 | 2.2:-52419761 | MS.gene004566:CDS |
TGTACATAGTTCAGATAGCT+TGG | 0.472440 | 2.2:+52418261 | None:intergenic |
GGACATTCCCTATTATCTAC+TGG | 0.473554 | 2.2:+52423777 | None:intergenic |
TGCTATTGGCGGTGTAAAAT+GGG | 0.473944 | 2.2:-52423293 | MS.gene004566:CDS |
AGAGGTGAATAGAGTGTTGG+AGG | 0.474272 | 2.2:-52418362 | MS.gene004566:CDS |
TCCCTATCTTACTCTAGATC+CGG | 0.475644 | 2.2:-52427277 | MS.gene004566:CDS |
GTTTCTAGTGTAGATTATAC+CGG | 0.476051 | 2.2:-52420464 | MS.gene004566:CDS |
TAAGTTATTCATAACATCTC+AGG | 0.479698 | 2.2:-52418212 | MS.gene004566:intron |
TATGTGACTGGTCAGAAGTA+CGG | 0.480115 | 2.2:-52423672 | MS.gene004566:CDS |
GATATTTGACGAAGAATTTG+AGG | 0.483062 | 2.2:+52420425 | None:intergenic |
TGACCTCCAGCCGCTCTGAT+TGG | 0.484162 | 2.2:-52423115 | MS.gene004566:CDS |
GGATTTGTATTGGACGAGAA+AGG | 0.486096 | 2.2:-52420685 | MS.gene004566:CDS |
TGAAAAGGGAACTGATACAA+TGG | 0.487025 | 2.2:-52422630 | MS.gene004566:CDS |
AGCCATCTTTCATTCAAAGT+TGG | 0.487386 | 2.2:+52419380 | None:intergenic |
GATTGAAGTATTTGGCCAGA+TGG | 0.493116 | 2.2:-52426948 | MS.gene004566:CDS |
TGAAGATCACCATTTGCATA+TGG | 0.494098 | 2.2:+52428496 | None:intergenic |
GAAGCTTCTATGGATGCTAT+TGG | 0.497496 | 2.2:-52423307 | MS.gene004566:CDS |
GCTCTGATTTGGAAAACTAC+AGG | 0.498287 | 2.2:-52423964 | MS.gene004566:intron |
GACGGTCCTCCATATGCAAA+TGG | 0.502560 | 2.2:-52428505 | MS.gene004566:CDS |
AACAGAGGTGAATAGAGTGT+TGG | 0.504672 | 2.2:-52418365 | MS.gene004566:CDS |
TCGGTAGATATAGCCTTTCA+AGG | 0.504963 | 2.2:+52426925 | None:intergenic |
CCATGGAGTAGTAGTCCAAA+TGG | 0.506841 | 2.2:+52425792 | None:intergenic |
TAGCATCCATAGAAGCTTCA+CGG | 0.507241 | 2.2:+52423311 | None:intergenic |
GGACTGGTCCATACAGCTCC+TGG | 0.507901 | 2.2:-52423711 | MS.gene004566:CDS |
GTTGCAAATATACCATATAG+TGG | 0.509587 | 2.2:-52417759 | MS.gene004566:CDS |
CTAACTAGTATAGCTACAAC+AGG | 0.514075 | 2.2:-52422155 | MS.gene004566:intron |
TCTGCAGCGCTTTGGAGTAT+GGG | 0.514714 | 2.2:-52427313 | MS.gene004566:intron |
AGTAGATAATAGGGAATGTC+CGG | 0.514933 | 2.2:-52423775 | MS.gene004566:CDS |
ATTACAACAGAAACAGGAAC+AGG | 0.515186 | 2.2:-52423732 | MS.gene004566:CDS |
GGCCAACTTTGAATGAAAGA+TGG | 0.515207 | 2.2:-52419382 | MS.gene004566:CDS |
CTATTACTCTTACAATAGAA+AGG | 0.517052 | 2.2:+52419507 | None:intergenic |
GGGAACTTTAAGATACCTCT+TGG | 0.520121 | 2.2:-52420381 | MS.gene004566:CDS |
AGATAGCTTGGATGCCATGA+TGG | 0.521438 | 2.2:+52418273 | None:intergenic |
TGGACTATTCCTGCCAATGC+AGG | 0.522305 | 2.2:-52425772 | MS.gene004566:intron |
AATGAATGTCTGCAGCGCTT+TGG | 0.522628 | 2.2:-52427321 | MS.gene004566:intron |
GTGCCTGGATGGGATTGTCA+TGG | 0.522664 | 2.2:-52428246 | MS.gene004566:CDS |
TGCTGAAGAAATTGAACTGT+GGG | 0.524557 | 2.2:-52419348 | MS.gene004566:CDS |
CCACACATCCTCAGCTAAGT+GGG | 0.524734 | 2.2:+52419472 | None:intergenic |
ATGTGACTGGTCAGAAGTAC+GGG | 0.524951 | 2.2:-52423671 | MS.gene004566:CDS |
GGAATGTCCGGTCGTAGTTG+GGG | 0.525634 | 2.2:-52423763 | MS.gene004566:CDS |
TATACCGGGGATGTGATGAT+TGG | 0.527253 | 2.2:-52420449 | MS.gene004566:CDS |
GAGACAATTGAGCATATCAA+TGG | 0.528661 | 2.2:-52423011 | MS.gene004566:intron |
ATATTTGACGAAGAATTTGA+GGG | 0.529870 | 2.2:+52420426 | None:intergenic |
GAAAACCTACCTGCATTGGC+AGG | 0.531642 | 2.2:+52425763 | None:intergenic |
GAGGCAGAAAACCTGTTCAC+TGG | 0.532226 | 2.2:-52426904 | MS.gene004566:CDS |
GCTTTGGAGTATGGGCTGAC+TGG | 0.532411 | 2.2:-52427305 | MS.gene004566:CDS |
TAGCAGCGGCTGCAAAGAGT+AGG | 0.535679 | 2.2:+52417621 | None:intergenic |
AGGACATCAGCTCCATATGC+AGG | 0.535831 | 2.2:+52420497 | None:intergenic |
CCATTTGGACTACTACTCCA+TGG | 0.539779 | 2.2:-52425792 | MS.gene004566:CDS |
TATACACCAATCAGAGCGGC+TGG | 0.541690 | 2.2:+52423109 | None:intergenic |
TGGTGCCAGTTTAGATGCAA+AGG | 0.543237 | 2.2:-52418317 | MS.gene004566:CDS |
AAAGCTGCTGAATATGAAAA+GGG | 0.545145 | 2.2:-52422644 | MS.gene004566:CDS |
AGTGGTGAATGCCTAATTCA+GGG | 0.548812 | 2.2:-52417741 | MS.gene004566:CDS |
GGTCAAGAAGATTATGTGAC+TGG | 0.551567 | 2.2:-52423684 | MS.gene004566:CDS |
AATAGAAAACCTACCTGCAT+TGG | 0.553171 | 2.2:+52425759 | None:intergenic |
TCTTGGCAAATCTTCACGAC+TGG | 0.553274 | 2.2:-52420364 | MS.gene004566:CDS |
AACAGAGCAATGGTTTGCAT+CGG | 0.561582 | 2.2:-52423344 | MS.gene004566:CDS |
CACTAGAAACCCAAAGCCGC+AGG | 0.562466 | 2.2:+52420477 | None:intergenic |
CCTTCAAGATACAAGTCTGC+CGG | 0.562609 | 2.2:+52422215 | None:intergenic |
GGTAACAGTAAAGTGTGGAT+TGG | 0.562975 | 2.2:-52417720 | MS.gene004566:CDS |
TTTCTAGTGTAGATTATACC+GGG | 0.565743 | 2.2:-52420463 | MS.gene004566:CDS |
GTTTCTATGTAGTACCCTGA+AGG | 0.565880 | 2.2:-52425910 | MS.gene004566:intron |
TTATACATCTGATTCCATCA+TGG | 0.566475 | 2.2:-52418287 | MS.gene004566:CDS |
TTTGGCCAGATGGCCTTGAA+AGG | 0.566596 | 2.2:-52426938 | MS.gene004566:CDS |
TTTAAATGCAATACCTGAGG+TGG | 0.568883 | 2.2:+52423268 | None:intergenic |
ACAAGTCTGCCGGAAAGCCA+AGG | 0.571077 | 2.2:+52422225 | None:intergenic |
CTTAAAGATGAGCAAGTCTG+TGG | 0.571334 | 2.2:-52420662 | MS.gene004566:CDS |
GCCACACATCCTCAGCTAAG+TGG | 0.571682 | 2.2:+52419471 | None:intergenic |
CTTTATCACGATAATTAGCT+GGG | 0.571752 | 2.2:+52422663 | None:intergenic |
ATGCTTCAACACATTGATCA+GGG | 0.572814 | 2.2:-52428544 | MS.gene004566:CDS |
GAAAATTCACTGAAGAAGCT+GGG | 0.574853 | 2.2:-52423617 | MS.gene004566:CDS |
TTCACTGGAGTCCCTCGTCA+CGG | 0.576013 | 2.2:-52426889 | MS.gene004566:CDS |
TCCGGAATATGAAGCTGCCC+AGG | 0.576526 | 2.2:-52427259 | MS.gene004566:intron |
TAATCTTCTTGACCATGTCC+AGG | 0.578269 | 2.2:+52423693 | None:intergenic |
AAATCAGTTTACCTCTAACT+CGG | 0.578892 | 2.2:+52426850 | None:intergenic |
AGGCCATGACAATCCCATCC+AGG | 0.579821 | 2.2:+52428243 | None:intergenic |
ACAAGTATCCGTATGATTGG+CGG | 0.580252 | 2.2:-52423393 | MS.gene004566:CDS |
ATTCCCTATTATCTACTGGA+TGG | 0.580281 | 2.2:+52423781 | None:intergenic |
AAGGAACAGATCAGCATCGA+GGG | 0.580658 | 2.2:-52422196 | MS.gene004566:CDS |
GCAAGAGCTGTCCGTGACGA+GGG | 0.580885 | 2.2:+52426878 | None:intergenic |
CATCAAAATAGAAACTTGAA+AGG | 0.581840 | 2.2:+52419786 | None:intergenic |
TCAGCTATTATAGCCCAAAA+GGG | 0.581918 | 2.2:-52422725 | MS.gene004566:intron |
GTCCATACAGCTCCTGGACA+TGG | 0.584702 | 2.2:-52423705 | MS.gene004566:CDS |
GTATATCACGACAAAGGACA+TGG | 0.585385 | 2.2:-52423091 | MS.gene004566:CDS |
GGACTTGATGTTCTTGGTGA+AGG | 0.585850 | 2.2:-52423585 | MS.gene004566:CDS |
AATGCATGCCTATCAATCCT+CGG | 0.585996 | 2.2:+52420175 | None:intergenic |
ACCATTGAAGTTGAGAGCAA+AGG | 0.586214 | 2.2:-52427559 | MS.gene004566:CDS |
TATTTAGAGCAACAGAGCAA+TGG | 0.586768 | 2.2:-52423354 | MS.gene004566:CDS |
TTCGAATACAAATTCAGCAA+AGG | 0.586970 | 2.2:+52419412 | None:intergenic |
AACAGAAACAGGAACAGGAC+TGG | 0.587200 | 2.2:-52423727 | MS.gene004566:CDS |
AGCAGCTACTTCAGAGCCAG+AGG | 0.588709 | 2.2:+52417575 | None:intergenic |
AGCAAGAGCTGTCCGTGACG+AGG | 0.588968 | 2.2:+52426877 | None:intergenic |
AGCAGCGGCTGCAAAGAGTA+GGG | 0.590710 | 2.2:+52417622 | None:intergenic |
GTTCCAAATGTGAAAGATGT+TGG | 0.592042 | 2.2:-52417680 | MS.gene004566:CDS |
TTCAATACGACGAACTTCCG+AGG | 0.592552 | 2.2:-52420192 | MS.gene004566:CDS |
TGGCATTATTCACACCAAGT+TGG | 0.594634 | 2.2:-52417660 | MS.gene004566:CDS |
ACATGTTCATCTTCCAGTGA+AGG | 0.594763 | 2.2:+52417780 | None:intergenic |
CCCACTTAGCTGAGGATGTG+TGG | 0.596456 | 2.2:-52419472 | MS.gene004566:CDS |
AGGGCCAATCATCACATCCC+CGG | 0.596642 | 2.2:+52420445 | None:intergenic |
TCCGGATCTAGAGTAAGATA+GGG | 0.598551 | 2.2:+52427276 | None:intergenic |
GGTGAATAGAGTGTTGGAGG+TGG | 0.600036 | 2.2:-52418359 | MS.gene004566:CDS |
CCCAAAAGGGTAGTGATGCA+TGG | 0.600068 | 2.2:-52422712 | MS.gene004566:CDS |
TCATCTACTGGAGATAGTAT+GGG | 0.601319 | 2.2:+52423645 | None:intergenic |
GCATTGGCAGGAATAGTCCA+TGG | 0.603212 | 2.2:+52425775 | None:intergenic |
GCTTCTATGGATGCTATTGG+CGG | 0.606146 | 2.2:-52423304 | MS.gene004566:CDS |
TTTCTATGTAGTACCCTGAA+GGG | 0.612326 | 2.2:-52425909 | MS.gene004566:intron |
CCTCCTTCAATCACACTACG+TGG | 0.612807 | 2.2:+52420625 | None:intergenic |
ATTGGTATATCTCGTGCTAG+TGG | 0.618281 | 2.2:-52417702 | MS.gene004566:CDS |
GCAAATGGTGATCTTCACAT+TGG | 0.619204 | 2.2:-52428490 | MS.gene004566:CDS |
TTTGCAGTCACTGGATAAGG+AGG | 0.625162 | 2.2:-52427598 | MS.gene004566:CDS |
GAAGTTTACCGGAAGTTACG+GGG | 0.625725 | 2.2:-52420401 | MS.gene004566:CDS |
GATCCACGTAGTGTGATTGA+AGG | 0.626229 | 2.2:-52420628 | MS.gene004566:CDS |
GAATGTCCGGTCGTAGTTGG+GGG | 0.628149 | 2.2:-52423762 | MS.gene004566:CDS |
GTGGATCGACTAGTTATACA+AGG | 0.629327 | 2.2:-52419562 | MS.gene004566:CDS |
CCACGTAGTGTGATTGAAGG+AGG | 0.629567 | 2.2:-52420625 | MS.gene004566:CDS |
TTCAGGGTAACAGTAAAGTG+TGG | 0.630750 | 2.2:-52417725 | MS.gene004566:CDS |
AATTCTTGTAGTAGGTCACT+CGG | 0.632605 | 2.2:+52425832 | None:intergenic |
CAAGTCTGCCGGAAAGCCAA+GGG | 0.632939 | 2.2:+52422226 | None:intergenic |
TCTCAAGACTGCAGCCCAGG+AGG | 0.637498 | 2.2:+52422259 | None:intergenic |
CTGCTGAAGAAATTGAACTG+TGG | 0.638800 | 2.2:-52419349 | MS.gene004566:CDS |
GGAAACTTCATTCTTCATGA+CGG | 0.638803 | 2.2:-52428523 | MS.gene004566:CDS |
AGTCGTGAAGATTTGCCAAG+AGG | 0.643848 | 2.2:+52420366 | None:intergenic |
TATATCACGACAAAGGACAT+GGG | 0.643904 | 2.2:-52423090 | MS.gene004566:CDS |
CAAGTCTGTGGGTAATGTTG+TGG | 0.647942 | 2.2:-52420650 | MS.gene004566:CDS |
TTAAAGATGAGCAAGTCTGT+GGG | 0.652621 | 2.2:-52420661 | MS.gene004566:CDS |
AGATCACCATTTGCATATGG+AGG | 0.654345 | 2.2:+52428499 | None:intergenic |
ACACCAATCAGAGCGGCTGG+AGG | 0.674444 | 2.2:+52423112 | None:intergenic |
GAACAGATCAGCATCGAGGG+TGG | 0.677211 | 2.2:-52422193 | MS.gene004566:CDS |
CAGCAACAACATCATAGCAG+CGG | 0.678013 | 2.2:+52417607 | None:intergenic |
TTCTAGTGTAGATTATACCG+GGG | 0.683189 | 2.2:-52420462 | MS.gene004566:CDS |
ATTGGTGTATATCACGACAA+AGG | 0.684504 | 2.2:-52423097 | MS.gene004566:CDS |
TTGAAAGGCTATATCTACCG+AGG | 0.685038 | 2.2:-52426923 | MS.gene004566:CDS |
AATATTGCCCCACTTAGCTG+AGG | 0.685385 | 2.2:-52419480 | MS.gene004566:CDS |
CATATGGAGCTGATGTCCTG+CGG | 0.691014 | 2.2:-52420493 | MS.gene004566:CDS |
GCAGCTACTTCAGAGCCAGA+GGG | 0.691101 | 2.2:+52417576 | None:intergenic |
CACACATCCTCAGCTAAGTG+GGG | 0.691417 | 2.2:+52419473 | None:intergenic |
AGCGGCTGCAAAGAGTAGGG+TGG | 0.701928 | 2.2:+52417625 | None:intergenic |
TATCACGATAATTAGCTGGG+AGG | 0.702391 | 2.2:+52422666 | None:intergenic |
GAAGGAACAGATCAGCATCG+AGG | 0.705965 | 2.2:-52422197 | MS.gene004566:CDS |
CCAACGTTAGAGGCAAAATG+GGG | 0.706136 | 2.2:-52424019 | MS.gene004566:CDS |
GGTCTGAAAATGAACCAACT+TGG | 0.706446 | 2.2:+52417646 | None:intergenic |
GAACTGATACAATGGATGTG+TGG | 0.725989 | 2.2:-52422622 | MS.gene004566:CDS |
ATATCACGACAAAGGACATG+GGG | 0.726009 | 2.2:-52423089 | MS.gene004566:CDS |
AAAAGGGTAGTGATGCATGG+TGG | 0.733413 | 2.2:-52422709 | MS.gene004566:CDS |
GTGATATACACCAATCAGAG+CGG | 0.748819 | 2.2:+52423105 | None:intergenic |
ACTGTGGGAAAAGATTCTCG+AGG | 0.794104 | 2.2:-52419333 | MS.gene004566:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 52417566 | 52428566 | 52417566 | ID=MS.gene004566 |
chr2.2 | mRNA | 52417566 | 52428566 | 52417566 | ID=MS.gene004566.t1;Parent=MS.gene004566 |
chr2.2 | exon | 52428444 | 52428566 | 52428444 | ID=MS.gene004566.t1.exon1;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52428444 | 52428566 | 52428444 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52428226 | 52428295 | 52428226 | ID=MS.gene004566.t1.exon2;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52428226 | 52428295 | 52428226 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52427509 | 52427621 | 52427509 | ID=MS.gene004566.t1.exon3;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52427509 | 52427621 | 52427509 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52427260 | 52427328 | 52427260 | ID=MS.gene004566.t1.exon4;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52427260 | 52427328 | 52427260 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52426862 | 52426969 | 52426862 | ID=MS.gene004566.t1.exon5;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52426862 | 52426969 | 52426862 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52425773 | 52425920 | 52425773 | ID=MS.gene004566.t1.exon6;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52425773 | 52425920 | 52425773 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52423965 | 52424196 | 52423965 | ID=MS.gene004566.t1.exon7;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52423965 | 52424196 | 52423965 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52423523 | 52423809 | 52423523 | ID=MS.gene004566.t1.exon8;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52423523 | 52423809 | 52423523 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52423282 | 52423418 | 52423282 | ID=MS.gene004566.t1.exon9;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52423282 | 52423418 | 52423282 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52423012 | 52423159 | 52423012 | ID=MS.gene004566.t1.exon10;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52423012 | 52423159 | 52423012 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52422612 | 52422743 | 52422612 | ID=MS.gene004566.t1.exon11;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52422612 | 52422743 | 52422612 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52422156 | 52422284 | 52422156 | ID=MS.gene004566.t1.exon12;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52422156 | 52422284 | 52422156 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52420597 | 52420739 | 52420597 | ID=MS.gene004566.t1.exon13;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52420597 | 52420739 | 52420597 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52420361 | 52420525 | 52420361 | ID=MS.gene004566.t1.exon14;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52420361 | 52420525 | 52420361 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52420102 | 52420227 | 52420102 | ID=MS.gene004566.t1.exon15;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52420102 | 52420227 | 52420102 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52419761 | 52419834 | 52419761 | ID=MS.gene004566.t1.exon16;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52419761 | 52419834 | 52419761 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52419334 | 52419583 | 52419334 | ID=MS.gene004566.t1.exon17;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52419334 | 52419583 | 52419334 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52418213 | 52418392 | 52418213 | ID=MS.gene004566.t1.exon18;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52418213 | 52418392 | 52418213 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
chr2.2 | exon | 52417566 | 52417814 | 52417566 | ID=MS.gene004566.t1.exon19;Parent=MS.gene004566.t1 |
chr2.2 | CDS | 52417566 | 52417814 | 52417566 | ID=cds.MS.gene004566.t1;Parent=MS.gene004566.t1 |
Gene Sequence |
Protein sequence |