Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004693.t1 | XP_003590693.1 | 99.8 | 417 | 1 | 0 | 1 | 417 | 1 | 417 | 2.90E-223 | 784.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004693.t1 | Q9M8J9 | 75.6 | 377 | 92 | 0 | 39 | 415 | 30 | 406 | 7.1e-170 | 598.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004693.t1 | G7I2K6 | 99.8 | 417 | 1 | 0 | 1 | 417 | 1 | 417 | 2.1e-223 | 784.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene004693 | MS.gene88846 | PPI |
| MS.gene004693 | MS.gene006074 | PPI |
| MS.gene004693 | MS.gene60766 | PPI |
| MS.gene004693 | MS.gene33918 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004693.t1 | MTR_1g072650 | 99.760 | 417 | 1 | 0 | 1 | 417 | 1 | 417 | 0.0 | 868 |
| MS.gene004693.t1 | MTR_7g094490 | 88.647 | 414 | 43 | 1 | 1 | 414 | 1 | 410 | 0.0 | 732 |
| MS.gene004693.t1 | MTR_5g087500 | 57.545 | 391 | 149 | 6 | 33 | 413 | 23 | 406 | 1.00e-154 | 443 |
| MS.gene004693.t1 | MTR_7g086500 | 56.883 | 385 | 158 | 4 | 36 | 415 | 13 | 394 | 1.46e-144 | 418 |
| MS.gene004693.t1 | MTR_5g087500 | 61.027 | 331 | 120 | 5 | 33 | 359 | 23 | 348 | 6.03e-141 | 406 |
| MS.gene004693.t1 | MTR_5g087500 | 60.486 | 329 | 122 | 4 | 33 | 357 | 23 | 347 | 1.30e-140 | 405 |
| MS.gene004693.t1 | MTR_7g086500 | 59.317 | 322 | 125 | 3 | 36 | 354 | 13 | 331 | 8.76e-128 | 373 |
| MS.gene004693.t1 | MTR_4g009630 | 60.335 | 179 | 71 | 0 | 39 | 217 | 23 | 201 | 9.50e-71 | 227 |
| MS.gene004693.t1 | MTR_4g009630 | 60.335 | 179 | 71 | 0 | 39 | 217 | 23 | 201 | 1.32e-69 | 225 |
| MS.gene004693.t1 | MTR_3g069000 | 54.595 | 185 | 84 | 0 | 204 | 388 | 51 | 235 | 3.35e-60 | 197 |
| MS.gene004693.t1 | MTR_1g104870 | 31.098 | 164 | 89 | 4 | 191 | 348 | 519 | 664 | 2.15e-15 | 78.6 |
| MS.gene004693.t1 | MTR_5g005940 | 30.435 | 161 | 94 | 3 | 191 | 348 | 516 | 661 | 3.26e-14 | 75.1 |
| MS.gene004693.t1 | MTR_7g094900 | 28.395 | 162 | 96 | 4 | 191 | 348 | 525 | 670 | 1.41e-13 | 73.2 |
| MS.gene004693.t1 | MTR_7g094910 | 28.395 | 162 | 96 | 4 | 191 | 348 | 506 | 651 | 1.81e-13 | 72.8 |
| MS.gene004693.t1 | MTR_3g088660 | 27.568 | 185 | 113 | 5 | 205 | 383 | 74 | 243 | 1.54e-12 | 67.8 |
| MS.gene004693.t1 | MTR_3g061090 | 28.289 | 152 | 94 | 3 | 201 | 350 | 83 | 221 | 1.32e-11 | 65.1 |
| MS.gene004693.t1 | MTR_3g061090 | 28.289 | 152 | 94 | 3 | 201 | 350 | 155 | 293 | 2.05e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004693.t1 | AT3G06190 | 72.616 | 409 | 108 | 1 | 7 | 415 | 2 | 406 | 0.0 | 626 |
| MS.gene004693.t1 | AT5G19000 | 72.872 | 376 | 102 | 0 | 40 | 415 | 32 | 407 | 0.0 | 593 |
| MS.gene004693.t1 | AT5G19000 | 72.872 | 376 | 102 | 0 | 40 | 415 | 32 | 407 | 0.0 | 593 |
| MS.gene004693.t1 | AT5G19000 | 66.667 | 411 | 102 | 1 | 40 | 415 | 32 | 442 | 0.0 | 577 |
| MS.gene004693.t1 | AT3G06190 | 72.857 | 350 | 91 | 1 | 7 | 356 | 2 | 347 | 0.0 | 540 |
| MS.gene004693.t1 | AT2G39760 | 60.674 | 356 | 139 | 1 | 27 | 382 | 11 | 365 | 1.77e-164 | 468 |
| MS.gene004693.t1 | AT3G03740 | 60.548 | 365 | 133 | 4 | 22 | 382 | 31 | 388 | 4.23e-153 | 441 |
| MS.gene004693.t1 | AT2G39760 | 60.976 | 328 | 127 | 1 | 27 | 354 | 11 | 337 | 4.50e-151 | 432 |
| MS.gene004693.t1 | AT2G39760 | 60.976 | 328 | 127 | 1 | 27 | 354 | 11 | 337 | 4.50e-151 | 432 |
| MS.gene004693.t1 | AT2G39760 | 60.976 | 328 | 127 | 1 | 27 | 354 | 11 | 337 | 6.73e-151 | 431 |
| MS.gene004693.t1 | AT3G43700 | 53.171 | 410 | 176 | 7 | 16 | 413 | 8 | 413 | 7.82e-146 | 421 |
| MS.gene004693.t1 | AT5G21010 | 52.068 | 411 | 181 | 6 | 15 | 413 | 2 | 408 | 5.02e-142 | 411 |
| MS.gene004693.t1 | AT3G43700 | 55.807 | 353 | 143 | 6 | 16 | 359 | 8 | 356 | 2.95e-134 | 390 |
| MS.gene004693.t1 | AT3G43700 | 56.609 | 348 | 138 | 6 | 16 | 354 | 8 | 351 | 4.92e-134 | 389 |
| MS.gene004693.t1 | AT3G06190 | 65.529 | 293 | 90 | 3 | 7 | 292 | 2 | 290 | 2.46e-133 | 385 |
| MS.gene004693.t1 | AT3G06190 | 71.538 | 260 | 70 | 1 | 7 | 266 | 2 | 257 | 6.11e-133 | 384 |
| MS.gene004693.t1 | AT3G06190 | 70.866 | 254 | 70 | 1 | 7 | 260 | 2 | 251 | 2.25e-126 | 367 |
| MS.gene004693.t1 | AT3G06190 | 59.649 | 57 | 23 | 0 | 359 | 415 | 239 | 295 | 1.54e-13 | 71.2 |
| MS.gene004693.t1 | AT5G19330 | 29.193 | 161 | 96 | 3 | 191 | 348 | 521 | 666 | 7.53e-16 | 80.1 |
| MS.gene004693.t1 | AT5G13060 | 26.368 | 201 | 133 | 3 | 189 | 388 | 546 | 732 | 3.51e-14 | 75.1 |
Find 87 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTAAGACAGTTATCTTTA+AGG | 0.101359 | 1.1:+54838533 | None:intergenic |
| CATTGCTGCATGTTATATAT+TGG | 0.221491 | 1.1:-54837375 | MS.gene004693:CDS |
| CTCTCAAAAGGGATTGGAAT+TGG | 0.250201 | 1.1:-54839549 | MS.gene004693:CDS |
| TTACTGGGATTAACTCAAAA+TGG | 0.277584 | 1.1:-54837327 | MS.gene004693:CDS |
| TCTACTATTGGTCACCAGTT+TGG | 0.278284 | 1.1:-54838439 | MS.gene004693:CDS |
| TCACCAGTTTGGGAAGCTTT+TGG | 0.292881 | 1.1:-54838428 | MS.gene004693:CDS |
| CCTGACATGCAAGAGCTTAC+TGG | 0.322826 | 1.1:-54837343 | MS.gene004693:CDS |
| CGAGTGAAGGGACTGATGTT+AGG | 0.326194 | 1.1:-54839407 | MS.gene004693:CDS |
| CCAATATCACCTTCTACTAT+TGG | 0.326476 | 1.1:-54838451 | MS.gene004693:CDS |
| CTACTATTGGTCACCAGTTT+GGG | 0.329635 | 1.1:-54838438 | MS.gene004693:CDS |
| GAACCTATGTGAGCCTTTGA+TGG | 0.352408 | 1.1:+54839590 | None:intergenic |
| CCACGATATTTCAACGTATA+AGG | 0.352677 | 1.1:+54839297 | None:intergenic |
| ATTGCTGCATGTTATATATT+GGG | 0.354568 | 1.1:-54837374 | MS.gene004693:CDS |
| ATTGGAATCGAAAATGTTCT+AGG | 0.357925 | 1.1:+54838469 | None:intergenic |
| GCATAGGAACGAAGCAATAC+TGG | 0.359166 | 1.1:-54836557 | MS.gene004693:CDS |
| CATCAGCCTAAGTCTATCTA+AGG | 0.367304 | 1.1:+54837255 | None:intergenic |
| CTGGATGGCAGTGATGTAAA+TGG | 0.372844 | 1.1:-54836538 | MS.gene004693:CDS |
| ATTATTTAAACCTTGAAAAC+AGG | 0.377554 | 1.1:+54838244 | None:intergenic |
| CCAATAGTAGAAGGTGATAT+TGG | 0.380995 | 1.1:+54838451 | None:intergenic |
| CCAGTAAGCTCTTGCATGTC+AGG | 0.381423 | 1.1:+54837343 | None:intergenic |
| TTTCCAAAAGCTTCCCAAAC+TGG | 0.384496 | 1.1:+54838425 | None:intergenic |
| TCACATAGGTTCAAGATAAC+GGG | 0.392891 | 1.1:-54839579 | MS.gene004693:CDS |
| CGTGGCTACAACTTTAGCTT+TGG | 0.416152 | 1.1:-54837194 | MS.gene004693:CDS |
| TCTCAAAAGGGATTGGAATT+GGG | 0.424168 | 1.1:-54839548 | MS.gene004693:CDS |
| GATGTTGAGGAGGTTGTTGA+TGG | 0.428183 | 1.1:+54839624 | None:intergenic |
| GGCTAGATTTACTGAGCATT+CGG | 0.434481 | 1.1:-54836593 | MS.gene004693:CDS |
| CACCGTTGGTGGGTACGAAT+GGG | 0.437086 | 1.1:-54839502 | MS.gene004693:CDS |
| TCACCGTTGGTGGGTACGAA+TGG | 0.438080 | 1.1:-54839503 | MS.gene004693:CDS |
| ACGGGGTATTCACTCTCAAA+AGG | 0.441675 | 1.1:-54839561 | MS.gene004693:CDS |
| TCAAACAGACTGCTTTCAGC+TGG | 0.445729 | 1.1:+54837152 | None:intergenic |
| TTCATCGCGCTTGCGAGTGA+AGG | 0.449539 | 1.1:-54839420 | MS.gene004693:CDS |
| CTCACATAGGTTCAAGATAA+CGG | 0.449878 | 1.1:-54839580 | MS.gene004693:CDS |
| AAAATGGGCAACTACCTTGA+TGG | 0.450276 | 1.1:-54837311 | MS.gene004693:CDS |
| CTGACATGCAAGAGCTTACT+GGG | 0.457209 | 1.1:-54837342 | MS.gene004693:CDS |
| TGATGGTTTCGAGTACTTGA+AGG | 0.459553 | 1.1:-54836656 | MS.gene004693:CDS |
| TGTGTGTTCTGATCTTTCAT+AGG | 0.465282 | 1.1:+54838295 | None:intergenic |
| TATTCACTCTCAAAAGGGAT+TGG | 0.480986 | 1.1:-54839555 | MS.gene004693:CDS |
| AACTGGTGACCAATAGTAGA+AGG | 0.481007 | 1.1:+54838442 | None:intergenic |
| GAGGTTGTTGATGGAATTGA+GGG | 0.492292 | 1.1:+54839633 | None:intergenic |
| GAGTGAAGGGACTGATGTTA+GGG | 0.509324 | 1.1:-54839406 | MS.gene004693:CDS |
| CTTCGTTCCTATGCTTGCAC+AGG | 0.511010 | 1.1:+54836566 | None:intergenic |
| AGATGATGATGATGAATTTG+AGG | 0.513479 | 1.1:+54839671 | None:intergenic |
| GGAGGTTGTTGATGGAATTG+AGG | 0.515360 | 1.1:+54839632 | None:intergenic |
| ATCTGCTAGCAGCAGCTGAT+CGG | 0.518356 | 1.1:-54837282 | MS.gene004693:CDS |
| TACTGGGATTAACTCAAAAT+GGG | 0.520060 | 1.1:-54837326 | MS.gene004693:CDS |
| CGGGGTATTCACTCTCAAAA+GGG | 0.521264 | 1.1:-54839560 | MS.gene004693:CDS |
| TCATCGCGCTTGCGAGTGAA+GGG | 0.522765 | 1.1:-54839419 | MS.gene004693:CDS |
| TCTGTTTGAAATTCATTGCA+AGG | 0.524584 | 1.1:-54837138 | MS.gene004693:CDS |
| AAAAGCTCAGTCAAAACAGA+TGG | 0.526627 | 1.1:+54836625 | None:intergenic |
| CTTAGTGTTAATTGTAGCGT+TGG | 0.538942 | 1.1:-54838517 | MS.gene004693:CDS |
| GATGGAATTGAGGGTGGTGA+TGG | 0.542993 | 1.1:+54839642 | None:intergenic |
| GAGTGGGAAAGAGAGGCATA+AGG | 0.552695 | 1.1:-54839355 | MS.gene004693:CDS |
| CTGCTTTCAGCTGGAAACAA+TGG | 0.557661 | 1.1:+54837161 | None:intergenic |
| TGGATCAGAGTGGGAAAGAG+AGG | 0.559531 | 1.1:-54839362 | MS.gene004693:CDS |
| TAGCAGATGCTGAGCCATCA+AGG | 0.560135 | 1.1:+54837297 | None:intergenic |
| TTGGAATCGAAAATGTTCTA+GGG | 0.573539 | 1.1:+54838470 | None:intergenic |
| TTTGATAGGACGTTGGAGAG+TGG | 0.581385 | 1.1:-54839321 | MS.gene004693:CDS |
| CGGACTTCCTGTGCAAGCAT+AGG | 0.582301 | 1.1:-54836573 | MS.gene004693:CDS |
| ATGTGAGCCTTTGATGGTGT+CGG | 0.584850 | 1.1:+54839596 | None:intergenic |
| GTTGTTGATGGAATTGAGGG+TGG | 0.596454 | 1.1:+54839636 | None:intergenic |
| TGAAATATCGTGGTAGCATG+TGG | 0.600425 | 1.1:-54839287 | MS.gene004693:intron |
| TCGATAACCGACACCATCAA+AGG | 0.601387 | 1.1:-54839603 | MS.gene004693:CDS |
| CAAAGCTAAAGTTGTAGCCA+CGG | 0.605118 | 1.1:+54837195 | None:intergenic |
| TCAGCTGTGATGCAAACTGA+TGG | 0.605667 | 1.1:-54836673 | MS.gene004693:intron |
| ATTGTAGCGTTGGTGTTGTG+AGG | 0.611297 | 1.1:-54838507 | MS.gene004693:CDS |
| CAGTGATGTAAATGGAAGGC+GGG | 0.613054 | 1.1:-54836530 | MS.gene004693:CDS |
| CGCCCATTCGTACCCACCAA+CGG | 0.616095 | 1.1:+54839500 | None:intergenic |
| GATGATGATGAATTTGAGGA+TGG | 0.626655 | 1.1:+54839675 | None:intergenic |
| CCTTATACGTTGAAATATCG+TGG | 0.627057 | 1.1:-54839297 | MS.gene004693:CDS |
| AAAGCTCAGTCAAAACAGAT+GGG | 0.629546 | 1.1:+54836626 | None:intergenic |
| TATAAAAGTTGAAGATATCG+AGG | 0.632506 | 1.1:-54838269 | MS.gene004693:CDS |
| ACACCATCAAAGGCTCACAT+AGG | 0.632820 | 1.1:-54839593 | MS.gene004693:CDS |
| GTCGGTTATCGATGTTGAGG+AGG | 0.637096 | 1.1:+54839614 | None:intergenic |
| GTTGTGAGGTCACACACAGA+GGG | 0.645126 | 1.1:-54838493 | MS.gene004693:CDS |
| GGTATGCCTTAGATAGACTT+AGG | 0.647862 | 1.1:-54837261 | MS.gene004693:CDS |
| CACATAGGTTCAAGATAACG+GGG | 0.658135 | 1.1:-54839578 | MS.gene004693:CDS |
| AGGAACGAAGCAATACTGGA+TGG | 0.667228 | 1.1:-54836553 | MS.gene004693:CDS |
| CCCTGATGGGAAAAGCGTGG+AGG | 0.667337 | 1.1:-54839466 | MS.gene004693:CDS |
| TTACCCTGATGGGAAAAGCG+TGG | 0.670712 | 1.1:-54839469 | MS.gene004693:CDS |
| AAAAGCTGAGCTCTAAACAC+AGG | 0.684581 | 1.1:+54838322 | None:intergenic |
| AGATGTTGCAATAAATACCG+TGG | 0.705274 | 1.1:-54837212 | MS.gene004693:CDS |
| GCAGTGATGTAAATGGAAGG+CGG | 0.707656 | 1.1:-54836531 | MS.gene004693:CDS |
| GGTGTCGGTTATCGATGTTG+AGG | 0.707765 | 1.1:+54839611 | None:intergenic |
| TGTTGTGAGGTCACACACAG+AGG | 0.714300 | 1.1:-54838494 | MS.gene004693:CDS |
| ATGGCAGTGATGTAAATGGA+AGG | 0.718805 | 1.1:-54836534 | MS.gene004693:CDS |
| GCAAGGCCTGAAAATCTCAG+AGG | 0.724609 | 1.1:-54837121 | MS.gene004693:intron |
| AGATTCTTCGAGAAACAACG+AGG | 0.757753 | 1.1:-54839698 | MS.gene004693:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGCTTAACAATTATAATAA+GGG | + | chr1.1:54838123-54838142 | None:intergenic | 15.0% |
| !! | TATGCTTAACAATTATAATA+AGG | + | chr1.1:54838124-54838143 | None:intergenic | 15.0% |
| !! | TCAAAATAGAGAAAAAAATA+TGG | + | chr1.1:54838808-54838827 | None:intergenic | 15.0% |
| !! | TTATAAGAAAGATGAAAATT+TGG | - | chr1.1:54837195-54837214 | MS.gene004693:CDS | 15.0% |
| !!! | AATGTTGATAAAAAAAATAG+AGG | + | chr1.1:54838387-54838406 | None:intergenic | 15.0% |
| !!! | TATTTTTTTCTCTATTTTGA+AGG | - | chr1.1:54838808-54838827 | MS.gene004693:intron | 15.0% |
| !! | AAAAATATGTGCAATATTAG+GGG | - | chr1.1:54839159-54839178 | MS.gene004693:intron | 20.0% |
| !! | AGAAAAATATGTGCAATATT+AGG | - | chr1.1:54839157-54839176 | MS.gene004693:intron | 20.0% |
| !! | AGAACACAACAATAAAAATA+TGG | - | chr1.1:54838344-54838363 | MS.gene004693:CDS | 20.0% |
| !! | ATTATTTAAACCTTGAAAAC+AGG | + | chr1.1:54837965-54837984 | None:intergenic | 20.0% |
| !! | GAAAAATATGTGCAATATTA+GGG | - | chr1.1:54839158-54839177 | MS.gene004693:intron | 20.0% |
| !! | TAAAGGAAATAAAATCAGAA+AGG | + | chr1.1:54838576-54838595 | None:intergenic | 20.0% |
| !! | TCTAATTCTTATTAAACCAT+TGG | - | chr1.1:54838636-54838655 | MS.gene004693:intron | 20.0% |
| !! | TCTTTATACCAATTAACATT+TGG | + | chr1.1:54838439-54838458 | None:intergenic | 20.0% |
| !! | TGCTTAACAATTATAATAAG+GGG | + | chr1.1:54838122-54838141 | None:intergenic | 20.0% |
| !!! | ATTACTTTGAGTTATTTAAG+GGG | + | chr1.1:54837437-54837456 | None:intergenic | 20.0% |
| !!! | ATTGTTTTAAATTGTGTTTC+AGG | - | chr1.1:54837603-54837622 | MS.gene004693:intron | 20.0% |
| !!! | ATTTTATTTCCTTTATTGCT+TGG | - | chr1.1:54838581-54838600 | MS.gene004693:CDS | 20.0% |
| !!! | CATTACTTTGAGTTATTTAA+GGG | + | chr1.1:54837438-54837457 | None:intergenic | 20.0% |
| !!! | GTTCTTAAACTCTTTTAATT+AGG | - | chr1.1:54839363-54839382 | MS.gene004693:CDS | 20.0% |
| !!! | TTGTTTTAAATTGTGTTTCA+GGG | - | chr1.1:54837604-54837623 | MS.gene004693:intron | 20.0% |
| ! | AAATCAACAAATGCATTCAA+TGG | + | chr1.1:54837500-54837519 | None:intergenic | 25.0% |
| ! | AATCAACAAATGCATTCAAT+GGG | + | chr1.1:54837499-54837518 | None:intergenic | 25.0% |
| ! | AATTTATACAAGAACTTGTG+GGG | + | chr1.1:54838530-54838549 | None:intergenic | 25.0% |
| ! | ACATGTTTGCAAAAAAACAT+TGG | - | chr1.1:54838210-54838229 | MS.gene004693:intron | 25.0% |
| ! | ATACAAATTTACCAACGATT+TGG | + | chr1.1:54839420-54839439 | None:intergenic | 25.0% |
| ! | ATGTTAATTGGTATAAAGAC+TGG | - | chr1.1:54838440-54838459 | MS.gene004693:CDS | 25.0% |
| ! | ATTGCTGCATGTTATATATT+GGG | - | chr1.1:54838832-54838851 | MS.gene004693:intron | 25.0% |
| ! | CAATTTATACAAGAACTTGT+GGG | + | chr1.1:54838531-54838550 | None:intergenic | 25.0% |
| ! | CCTTAAATAACTCAAAGTAA+TGG | - | chr1.1:54837436-54837455 | MS.gene004693:intron | 25.0% |
| ! | GAAGTTTAATAACATGCATA+TGG | - | chr1.1:54838755-54838774 | MS.gene004693:intron | 25.0% |
| ! | TACAAATTTACCAACGATTT+GGG | + | chr1.1:54839419-54839438 | None:intergenic | 25.0% |
| ! | TATAAAAGTTGAAGATATCG+AGG | - | chr1.1:54837937-54837956 | MS.gene004693:intron | 25.0% |
| ! | TCAATTTATACAAGAACTTG+TGG | + | chr1.1:54838532-54838551 | None:intergenic | 25.0% |
| ! | TTATACCAATTAACATTTGG+AGG | + | chr1.1:54838436-54838455 | None:intergenic | 25.0% |
| !! | AATACTTCAGTTGATATCAT+AGG | + | chr1.1:54839495-54839514 | None:intergenic | 25.0% |
| !! | CCATTACTTTGAGTTATTTA+AGG | + | chr1.1:54837439-54837458 | None:intergenic | 25.0% |
| !!! | AAACGTTTGATTCGTTTTTT+GGG | - | chr1.1:54837371-54837390 | MS.gene004693:CDS | 25.0% |
| !!! | TGTTTTAAATTGTGTTTCAG+GGG | - | chr1.1:54837605-54837624 | MS.gene004693:intron | 25.0% |
| !!! | TTGAATGCATTTGTTGATTT+TGG | - | chr1.1:54837500-54837519 | MS.gene004693:intron | 25.0% |
| AATTAGGATGCTGTATATGA+TGG | - | chr1.1:54839379-54839398 | MS.gene004693:CDS | 30.0% | |
| ACTTGTGTTTAATGTGTTTG+TGG | - | chr1.1:54838713-54838732 | MS.gene004693:intron | 30.0% | |
| ATAGTCTAACTTCAAAACCA+AGG | + | chr1.1:54837414-54837433 | None:intergenic | 30.0% | |
| ATCACAGCTGAAAAAAAGAA+AGG | + | chr1.1:54839524-54839543 | None:intergenic | 30.0% | |
| ATTGGAATCGAAAATGTTCT+AGG | + | chr1.1:54837740-54837759 | None:intergenic | 30.0% | |
| CACTAAGACAGTTATCTTTA+AGG | + | chr1.1:54837676-54837695 | None:intergenic | 30.0% | |
| CATTGCTGCATGTTATATAT+TGG | - | chr1.1:54838831-54838850 | MS.gene004693:intron | 30.0% | |
| CGAAGTTCAATATCTATATC+AGG | + | chr1.1:54838081-54838100 | None:intergenic | 30.0% | |
| TACTGGGATTAACTCAAAAT+GGG | - | chr1.1:54838880-54838899 | MS.gene004693:intron | 30.0% | |
| TCACAGCTGAAAAAAAGAAA+GGG | + | chr1.1:54839523-54839542 | None:intergenic | 30.0% | |
| TGATTCTAATTCGTTATCGA+GGG | - | chr1.1:54837010-54837029 | MS.gene004693:intron | 30.0% | |
| TTACATACTTATGCTTCTGT+GGG | - | chr1.1:54837162-54837181 | MS.gene004693:CDS | 30.0% | |
| TTACTGGGATTAACTCAAAA+TGG | - | chr1.1:54838879-54838898 | MS.gene004693:intron | 30.0% | |
| TTATGCCTCCAAATGTTAAT+TGG | - | chr1.1:54838428-54838447 | MS.gene004693:CDS | 30.0% | |
| TTCTGAACATTGTTGGAAAA+GGG | - | chr1.1:54837261-54837280 | MS.gene004693:CDS | 30.0% | |
| TTGGAATCGAAAATGTTCTA+GGG | + | chr1.1:54837739-54837758 | None:intergenic | 30.0% | |
| ! | AATTTTTGCGGCTCATAAAT+TGG | - | chr1.1:54837844-54837863 | MS.gene004693:intron | 30.0% |
| ! | AGATGATGATGATGAATTTG+AGG | + | chr1.1:54836538-54836557 | None:intergenic | 30.0% |
| ! | AGTGAATGGTGAAATTTTTG+CGG | - | chr1.1:54837832-54837851 | MS.gene004693:intron | 30.0% |
| ! | CGTATGCTTATGCTTTATTA+AGG | - | chr1.1:54839271-54839290 | MS.gene004693:intron | 30.0% |
| ! | GCTTTTTGAATTAACGCTTT+TGG | - | chr1.1:54836824-54836843 | MS.gene004693:intron | 30.0% |
| ! | GGAATGATAGGAATTTTTAC+TGG | - | chr1.1:54837131-54837150 | MS.gene004693:CDS | 30.0% |
| ! | TCTGTTTGAAATTCATTGCA+AGG | - | chr1.1:54839068-54839087 | MS.gene004693:intron | 30.0% |
| !! | AGGTTCATAGTCATTTTGAT+AGG | - | chr1.1:54836871-54836890 | MS.gene004693:intron | 30.0% |
| !!! | AACGTTTGATTCGTTTTTTG+GGG | - | chr1.1:54837372-54837391 | MS.gene004693:CDS | 30.0% |
| !!! | ATGGAACTTTTTTGTGACAA+TGG | - | chr1.1:54837555-54837574 | MS.gene004693:intron | 30.0% |
| !!! | CAAACGTTTGATTCGTTTTT+TGG | - | chr1.1:54837370-54837389 | MS.gene004693:CDS | 30.0% |
| !!! | CGATTTATTTTTACCCTGAT+GGG | - | chr1.1:54836727-54836746 | MS.gene004693:intron | 30.0% |
| !!! | GATGTGAATTTTGAAGTGAA+TGG | - | chr1.1:54837818-54837837 | MS.gene004693:intron | 30.0% |
| !!! | TGCATTTGTTGATTTTGGTT+TGG | - | chr1.1:54837505-54837524 | MS.gene004693:intron | 30.0% |
| AAAAGCTCAGTCAAAACAGA+TGG | + | chr1.1:54839584-54839603 | None:intergenic | 35.0% | |
| AAACAGGAACCAAGCAATAA+AGG | + | chr1.1:54838593-54838612 | None:intergenic | 35.0% | |
| AAAGCTCAGTCAAAACAGAT+GGG | + | chr1.1:54839583-54839602 | None:intergenic | 35.0% | |
| AAGGAGGTTTGAAAAACCAA+TGG | + | chr1.1:54838655-54838674 | None:intergenic | 35.0% | |
| AGATGTTGCAATAAATACCG+TGG | - | chr1.1:54838994-54839013 | MS.gene004693:intron | 35.0% | |
| AGATTGAGAGATGTGAGATT+TGG | - | chr1.1:54838472-54838491 | MS.gene004693:CDS | 35.0% | |
| ATAGCAACATACAGACTTTC+AGG | + | chr1.1:54839203-54839222 | None:intergenic | 35.0% | |
| ATATACTCGCAAATTGCAAC+TGG | + | chr1.1:54838282-54838301 | None:intergenic | 35.0% | |
| ATATCAGGACAGAGACAAAA+AGG | + | chr1.1:54838066-54838085 | None:intergenic | 35.0% | |
| ATGTGCAATATTAGGGGAAT+TGG | - | chr1.1:54839165-54839184 | MS.gene004693:intron | 35.0% | |
| CATTCCAAGTTACCAACATT+GGG | + | chr1.1:54837117-54837136 | None:intergenic | 35.0% | |
| CCAATAGTAGAAGGTGATAT+TGG | + | chr1.1:54837758-54837777 | None:intergenic | 35.0% | |
| CCAATATCACCTTCTACTAT+TGG | - | chr1.1:54837755-54837774 | MS.gene004693:intron | 35.0% | |
| CCACGATATTTCAACGTATA+AGG | + | chr1.1:54836912-54836931 | None:intergenic | 35.0% | |
| CCTTATACGTTGAAATATCG+TGG | - | chr1.1:54836909-54836928 | MS.gene004693:intron | 35.0% | |
| CTCACATAGGTTCAAGATAA+CGG | - | chr1.1:54836626-54836645 | MS.gene004693:CDS | 35.0% | |
| CTGATTCTAATTCGTTATCG+AGG | - | chr1.1:54837009-54837028 | MS.gene004693:intron | 35.0% | |
| CTTAGTGTTAATTGTAGCGT+TGG | - | chr1.1:54837689-54837708 | MS.gene004693:intron | 35.0% | |
| GGTCTGGATGAAGAATAAAT+AGG | + | chr1.1:54839474-54839493 | None:intergenic | 35.0% | |
| GTTACATACTTATGCTTCTG+TGG | - | chr1.1:54837161-54837180 | MS.gene004693:CDS | 35.0% | |
| TATTCACTCTCAAAAGGGAT+TGG | - | chr1.1:54836651-54836670 | MS.gene004693:CDS | 35.0% | |
| TCACATAGGTTCAAGATAAC+GGG | - | chr1.1:54836627-54836646 | MS.gene004693:CDS | 35.0% | |
| TCATTCCAAGTTACCAACAT+TGG | + | chr1.1:54837118-54837137 | None:intergenic | 35.0% | |
| TCTCAAAAGGGATTGGAATT+GGG | - | chr1.1:54836658-54836677 | MS.gene004693:CDS | 35.0% | |
| TCTGAACATTGTTGGAAAAG+GGG | - | chr1.1:54837262-54837281 | MS.gene004693:CDS | 35.0% | |
| TGTGCAATATTAGGGGAATT+GGG | - | chr1.1:54839166-54839185 | MS.gene004693:intron | 35.0% | |
| TGTGTGTTCTGATCTTTCAT+AGG | + | chr1.1:54837914-54837933 | None:intergenic | 35.0% | |
| TGTTTGTGAAGGTTTAAGCT+TGG | - | chr1.1:54837036-54837055 | MS.gene004693:intron | 35.0% | |
| TTCTTGAATTGACCCAATGT+TGG | - | chr1.1:54837102-54837121 | MS.gene004693:intron | 35.0% | |
| TTGCGAGTATATTTGACTGT+TGG | - | chr1.1:54838290-54838309 | MS.gene004693:CDS | 35.0% | |
| ! | AAAAAGTGCAAACGAGTTCT+TGG | + | chr1.1:54838498-54838517 | None:intergenic | 35.0% |
| ! | AACATTTGGAGGCATAAATG+AGG | + | chr1.1:54838425-54838444 | None:intergenic | 35.0% |
| ! | ACATTTGGAGGCATAAATGA+GGG | + | chr1.1:54838424-54838443 | None:intergenic | 35.0% |
| ! | GATGATGATGAATTTGAGGA+TGG | + | chr1.1:54836534-54836553 | None:intergenic | 35.0% |
| ! | GTTCTGAACATTGTTGGAAA+AGG | - | chr1.1:54837260-54837279 | MS.gene004693:CDS | 35.0% |
| ! | TACAGTTTTACCCAAATCGT+TGG | - | chr1.1:54839406-54839425 | MS.gene004693:CDS | 35.0% |
| ! | TGAAGTGTTCTGAACATTGT+TGG | - | chr1.1:54837254-54837273 | MS.gene004693:CDS | 35.0% |
| ! | TTCAGTTGATATCATAGGTC+TGG | + | chr1.1:54839490-54839509 | None:intergenic | 35.0% |
| !! | GAAGAGGTACAGTTTTCTAA+AGG | - | chr1.1:54837577-54837596 | MS.gene004693:intron | 35.0% |
| !! | TAGTCATTTTGATAGGACGT+TGG | - | chr1.1:54836878-54836897 | MS.gene004693:intron | 35.0% |
| !! | TGTTGGTAACTTGGAATGAT+AGG | - | chr1.1:54837119-54837138 | MS.gene004693:intron | 35.0% |
| !!! | ACGTTTGATTCGTTTTTTGG+GGG | - | chr1.1:54837373-54837392 | MS.gene004693:CDS | 35.0% |
| !!! | ATCTGTTTTGACTGAGCTTT+TGG | - | chr1.1:54839583-54839602 | MS.gene004693:CDS | 35.0% |
| !!! | CTTTTTTGTGACAATGGAAG+AGG | - | chr1.1:54837561-54837580 | MS.gene004693:intron | 35.0% |
| !!! | GCGATTTATTTTTACCCTGA+TGG | - | chr1.1:54836726-54836745 | MS.gene004693:intron | 35.0% |
| AAAATGGGCAACTACCTTGA+TGG | - | chr1.1:54838895-54838914 | MS.gene004693:intron | 40.0% | |
| AAACTGCAGAAAGTCAAAGG+AGG | + | chr1.1:54838671-54838690 | None:intergenic | 40.0% | |
| AACTGGTGACCAATAGTAGA+AGG | + | chr1.1:54837767-54837786 | None:intergenic | 40.0% | |
| AGATTCTTCGAGAAACAACG+AGG | - | chr1.1:54836508-54836527 | MS.gene004693:CDS | 40.0% | |
| AGCATACGATAGTCAACAAC+AGG | + | chr1.1:54839259-54839278 | None:intergenic | 40.0% | |
| AGGGGAATTGGGACATTAAA+AGG | - | chr1.1:54839177-54839196 | MS.gene004693:intron | 40.0% | |
| ATGGCAGTGATGTAAATGGA+AGG | - | chr1.1:54839672-54839691 | MS.gene004693:CDS | 40.0% | |
| CAAAGCTAAAGTTGTAGCCA+CGG | + | chr1.1:54839014-54839033 | None:intergenic | 40.0% | |
| CACATAGGTTCAAGATAACG+GGG | - | chr1.1:54836628-54836647 | MS.gene004693:CDS | 40.0% | |
| CATCAGCCTAAGTCTATCTA+AGG | + | chr1.1:54838954-54838973 | None:intergenic | 40.0% | |
| CGTAAACTGCAGAAAGTCAA+AGG | + | chr1.1:54838674-54838693 | None:intergenic | 40.0% | |
| CTACTATTGGTCACCAGTTT+GGG | - | chr1.1:54837768-54837787 | MS.gene004693:intron | 40.0% | |
| CTCTCAAAAGGGATTGGAAT+TGG | - | chr1.1:54836657-54836676 | MS.gene004693:CDS | 40.0% | |
| CTGAACATTGTTGGAAAAGG+GGG | - | chr1.1:54837263-54837282 | MS.gene004693:CDS | 40.0% | |
| GCTAGAACAACTCAACAAAC+AGG | + | chr1.1:54838609-54838628 | None:intergenic | 40.0% | |
| GGCTAGATTTACTGAGCATT+CGG | - | chr1.1:54839613-54839632 | MS.gene004693:CDS | 40.0% | |
| GGTATGCCTTAGATAGACTT+AGG | - | chr1.1:54838945-54838964 | MS.gene004693:intron | 40.0% | |
| TCTACTATTGGTCACCAGTT+TGG | - | chr1.1:54837767-54837786 | MS.gene004693:intron | 40.0% | |
| TGAAATATCGTGGTAGCATG+TGG | - | chr1.1:54836919-54836938 | MS.gene004693:intron | 40.0% | |
| TGAACATTGTTGGAAAAGGG+GGG | - | chr1.1:54837264-54837283 | MS.gene004693:CDS | 40.0% | |
| TGTGAAGGTTTAAGCTTGGT+GGG | - | chr1.1:54837040-54837059 | MS.gene004693:intron | 40.0% | |
| TTCCATGAACTCAATTCAGC+AGG | + | chr1.1:54837541-54837560 | None:intergenic | 40.0% | |
| TTCCTGCTGAATTGAGTTCA+TGG | - | chr1.1:54837536-54837555 | MS.gene004693:intron | 40.0% | |
| TTGTGAAGGTTTAAGCTTGG+TGG | - | chr1.1:54837039-54837058 | MS.gene004693:intron | 40.0% | |
| TTTCCAAAAGCTTCCCAAAC+TGG | + | chr1.1:54837784-54837803 | None:intergenic | 40.0% | |
| ! | GAGGTTGTTGATGGAATTGA+GGG | + | chr1.1:54836576-54836595 | None:intergenic | 40.0% |
| ! | GTTTGTTGAGTTGTTCTAGC+TGG | - | chr1.1:54838609-54838628 | MS.gene004693:intron | 40.0% |
| ! | TAACGCTTTTGGATCAGAGT+GGG | - | chr1.1:54836835-54836854 | MS.gene004693:intron | 40.0% |
| ! | TGATGGTTTCGAGTACTTGA+AGG | - | chr1.1:54839550-54839569 | MS.gene004693:CDS | 40.0% |
| ! | TTAACGCTTTTGGATCAGAG+TGG | - | chr1.1:54836834-54836853 | MS.gene004693:intron | 40.0% |
| !! | AAAAGCTGAGCTCTAAACAC+AGG | + | chr1.1:54837887-54837906 | None:intergenic | 40.0% |
| !! | GTGTTTAGAGCTCAGCTTTT+TGG | - | chr1.1:54837887-54837906 | MS.gene004693:intron | 40.0% |
| !! | TTGACCCAATGTTGGTAACT+TGG | - | chr1.1:54837110-54837129 | MS.gene004693:intron | 40.0% |
| !! | TTTGGGAAGCTTTTGGAAAG+TGG | - | chr1.1:54837785-54837804 | MS.gene004693:intron | 40.0% |
| !!! | AACACACCTCTGAGATTTTC+AGG | + | chr1.1:54839094-54839113 | None:intergenic | 40.0% |
| !!! | TTGATTCGTTTTTTGGGGGT+GGG | - | chr1.1:54837377-54837396 | MS.gene004693:CDS | 40.0% |
| !!! | TTTGATTCGTTTTTTGGGGG+TGG | - | chr1.1:54837376-54837395 | MS.gene004693:CDS | 40.0% |
| ACACCATCAAAGGCTCACAT+AGG | - | chr1.1:54836613-54836632 | MS.gene004693:CDS | 45.0% | |
| AGGAACGAAGCAATACTGGA+TGG | - | chr1.1:54839653-54839672 | MS.gene004693:CDS | 45.0% | |
| ATCGAGGGTAGTGTTTGTGA+AGG | - | chr1.1:54837025-54837044 | MS.gene004693:intron | 45.0% | |
| CAGTGATGTAAATGGAAGGC+GGG | - | chr1.1:54839676-54839695 | MS.gene004693:CDS | 45.0% | |
| CTGACATGCAAGAGCTTACT+GGG | - | chr1.1:54838864-54838883 | MS.gene004693:intron | 45.0% | |
| CTGCTTTCAGCTGGAAACAA+TGG | + | chr1.1:54839048-54839067 | None:intergenic | 45.0% | |
| CTGGATGGCAGTGATGTAAA+TGG | - | chr1.1:54839668-54839687 | MS.gene004693:CDS | 45.0% | |
| GAACCTATGTGAGCCTTTGA+TGG | + | chr1.1:54836619-54836638 | None:intergenic | 45.0% | |
| GAGTGAAGGGACTGATGTTA+GGG | - | chr1.1:54836800-54836819 | MS.gene004693:intron | 45.0% | |
| GATGTTGAGGAGGTTGTTGA+TGG | + | chr1.1:54836585-54836604 | None:intergenic | 45.0% | |
| GCAGTGATGTAAATGGAAGG+CGG | - | chr1.1:54839675-54839694 | MS.gene004693:CDS | 45.0% | |
| GCATAGGAACGAAGCAATAC+TGG | - | chr1.1:54839649-54839668 | MS.gene004693:CDS | 45.0% | |
| TCAAACAGACTGCTTTCAGC+TGG | + | chr1.1:54839057-54839076 | None:intergenic | 45.0% | |
| TCAGCTGTGATGCAAACTGA+TGG | - | chr1.1:54839533-54839552 | MS.gene004693:CDS | 45.0% | |
| TCGATAACCGACACCATCAA+AGG | - | chr1.1:54836603-54836622 | MS.gene004693:CDS | 45.0% | |
| TCGCAAATTGCAACTGGCAA+GGG | + | chr1.1:54838276-54838295 | None:intergenic | 45.0% | |
| TTTGATAGGACGTTGGAGAG+TGG | - | chr1.1:54836885-54836904 | MS.gene004693:intron | 45.0% | |
| ! | ACGGGGTATTCACTCTCAAA+AGG | - | chr1.1:54836645-54836664 | MS.gene004693:CDS | 45.0% |
| ! | CGGGGTATTCACTCTCAAAA+GGG | - | chr1.1:54836646-54836665 | MS.gene004693:CDS | 45.0% |
| ! | CGTGGCTACAACTTTAGCTT+TGG | - | chr1.1:54839012-54839031 | MS.gene004693:intron | 45.0% |
| ! | CTGAGATTTTCACCGTTGGT+GGG | - | chr1.1:54836694-54836713 | MS.gene004693:intron | 45.0% |
| ! | GGAGGTTGTTGATGGAATTG+AGG | + | chr1.1:54836577-54836596 | None:intergenic | 45.0% |
| ! | GTTGTTGATGGAATTGAGGG+TGG | + | chr1.1:54836573-54836592 | None:intergenic | 45.0% |
| ! | TATCGAGGCTCCTGTTTTCA+AGG | - | chr1.1:54837952-54837971 | MS.gene004693:intron | 45.0% |
| ! | TCACCAGTTTGGGAAGCTTT+TGG | - | chr1.1:54837778-54837797 | MS.gene004693:intron | 45.0% |
| !! | ATGTGAGCCTTTGATGGTGT+CGG | + | chr1.1:54836613-54836632 | None:intergenic | 45.0% |
| !! | ATTGTAGCGTTGGTGTTGTG+AGG | - | chr1.1:54837699-54837718 | MS.gene004693:intron | 45.0% |
| !! | GCATCTGAGATTTTCACCGT+TGG | - | chr1.1:54836690-54836709 | MS.gene004693:intron | 45.0% |
| !! | TCTGAGATTTTCACCGTTGG+TGG | - | chr1.1:54836693-54836712 | MS.gene004693:intron | 45.0% |
| !!! | GACTGAGCTTTTGGAGTATG+TGG | - | chr1.1:54839592-54839611 | MS.gene004693:CDS | 45.0% |
| !!! | TGATTCGTTTTTTGGGGGTG+GGG | - | chr1.1:54837378-54837397 | MS.gene004693:CDS | 45.0% |
| AACTAATGCCAGAAGCAGGC+AGG | + | chr1.1:54838173-54838192 | None:intergenic | 50.0% | |
| ACCCAACTAATGCCAGAAGC+AGG | + | chr1.1:54838177-54838196 | None:intergenic | 50.0% | |
| ATCTGCTAGCAGCAGCTGAT+CGG | - | chr1.1:54838924-54838943 | MS.gene004693:intron | 50.0% | |
| CAAATTGCAACTGGCAAGGG+TGG | + | chr1.1:54838273-54838292 | None:intergenic | 50.0% | |
| CCAGTAAGCTCTTGCATGTC+AGG | + | chr1.1:54838866-54838885 | None:intergenic | 50.0% | |
| CCTGACATGCAAGAGCTTAC+TGG | - | chr1.1:54838863-54838882 | MS.gene004693:intron | 50.0% | |
| CGAGTGAAGGGACTGATGTT+AGG | - | chr1.1:54836799-54836818 | MS.gene004693:intron | 50.0% | |
| CTCGCAAATTGCAACTGGCA+AGG | + | chr1.1:54838277-54838296 | None:intergenic | 50.0% | |
| CTTCGTTCCTATGCTTGCAC+AGG | + | chr1.1:54839643-54839662 | None:intergenic | 50.0% | |
| GAGGCATAAATGAGGGAAGC+GGG | + | chr1.1:54838417-54838436 | None:intergenic | 50.0% | |
| GATGGAATTGAGGGTGGTGA+TGG | + | chr1.1:54836567-54836586 | None:intergenic | 50.0% | |
| GCAAGGCCTGAAAATCTCAG+AGG | - | chr1.1:54839085-54839104 | MS.gene004693:intron | 50.0% | |
| GCCTGCTTCTGGCATTAGTT+GGG | - | chr1.1:54838173-54838192 | MS.gene004693:intron | 50.0% | |
| GTCGGTTATCGATGTTGAGG+AGG | + | chr1.1:54836595-54836614 | None:intergenic | 50.0% | |
| GTTGTGAGGTCACACACAGA+GGG | - | chr1.1:54837713-54837732 | MS.gene004693:intron | 50.0% | |
| TAGCAGATGCTGAGCCATCA+AGG | + | chr1.1:54838912-54838931 | None:intergenic | 50.0% | |
| TGCCTGCTTCTGGCATTAGT+TGG | - | chr1.1:54838172-54838191 | MS.gene004693:intron | 50.0% | |
| TGGATCAGAGTGGGAAAGAG+AGG | - | chr1.1:54836844-54836863 | MS.gene004693:intron | 50.0% | |
| TGTTGGAAAAGGGGGGTGAA+AGG | - | chr1.1:54837271-54837290 | MS.gene004693:CDS | 50.0% | |
| TGTTGTGAGGTCACACACAG+AGG | - | chr1.1:54837712-54837731 | MS.gene004693:intron | 50.0% | |
| TTACCCTGATGGGAAAAGCG+TGG | - | chr1.1:54836737-54836756 | MS.gene004693:intron | 50.0% | |
| ! | GAGTGGGAAAGAGAGGCATA+AGG | - | chr1.1:54836851-54836870 | MS.gene004693:intron | 50.0% |
| ! | GGAGGCATAAATGAGGGAAG+CGG | + | chr1.1:54838418-54838437 | None:intergenic | 50.0% |
| !! | GGTGTCGGTTATCGATGTTG+AGG | + | chr1.1:54836598-54836617 | None:intergenic | 50.0% |
| ATGCCAGAAGCAGGCAGGAT+TGG | + | chr1.1:54838168-54838187 | None:intergenic | 55.0% | |
| CGGACTTCCTGTGCAAGCAT+AGG | - | chr1.1:54839633-54839652 | MS.gene004693:CDS | 55.0% | |
| GGCAGGATTGGGCACTAAGT+CGG | + | chr1.1:54838156-54838175 | None:intergenic | 55.0% | |
| TCATCGCGCTTGCGAGTGAA+GGG | - | chr1.1:54836787-54836806 | MS.gene004693:intron | 55.0% | |
| TGCCAGAAGCAGGCAGGATT+GGG | + | chr1.1:54838167-54838186 | None:intergenic | 55.0% | |
| TTCATCGCGCTTGCGAGTGA+AGG | - | chr1.1:54836786-54836805 | MS.gene004693:intron | 55.0% | |
| ! | CACCGTTGGTGGGTACGAAT+GGG | - | chr1.1:54836704-54836723 | MS.gene004693:intron | 55.0% |
| ! | CCTCCACGCTTTTCCCATCA+GGG | + | chr1.1:54836743-54836762 | None:intergenic | 55.0% |
| ! | TCACCGTTGGTGGGTACGAA+TGG | - | chr1.1:54836703-54836722 | MS.gene004693:intron | 55.0% |
| ! | TCCTCCACGCTTTTCCCATC+AGG | + | chr1.1:54836744-54836763 | None:intergenic | 55.0% |
| !!! | TCGTTTTTTGGGGGTGGGGT+GGG | - | chr1.1:54837382-54837401 | MS.gene004693:intron | 55.0% |
| !!! | TTCGTTTTTTGGGGGTGGGG+TGG | - | chr1.1:54837381-54837400 | MS.gene004693:intron | 55.0% |
| CGCCCATTCGTACCCACCAA+CGG | + | chr1.1:54836709-54836728 | None:intergenic | 60.0% | |
| TGCCCAATCCTGCCTGCTTC+TGG | - | chr1.1:54838162-54838181 | MS.gene004693:intron | 60.0% | |
| ! | CCCTGATGGGAAAAGCGTGG+AGG | - | chr1.1:54836740-54836759 | MS.gene004693:intron | 60.0% |
| TTTGGGGGTGGGGTGGGAGA+GGG | - | chr1.1:54837388-54837407 | MS.gene004693:intron | 65.0% | |
| !! | TTTTGGGGGTGGGGTGGGAG+AGG | - | chr1.1:54837387-54837406 | MS.gene004693:intron | 65.0% |
| GGTGGGGTGGGAGAGGGCCT+TGG | - | chr1.1:54837394-54837413 | MS.gene004693:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 54836501 | 54839727 | 54836501 | ID=MS.gene004693 |
| chr1.1 | mRNA | 54836501 | 54839727 | 54836501 | ID=MS.gene004693.t1;Parent=MS.gene004693 |
| chr1.1 | exon | 54839288 | 54839727 | 54839288 | ID=MS.gene004693.t1.exon1;Parent=MS.gene004693.t1 |
| chr1.1 | CDS | 54839288 | 54839727 | 54839288 | ID=cds.MS.gene004693.t1;Parent=MS.gene004693.t1 |
| chr1.1 | exon | 54838255 | 54838603 | 54838255 | ID=MS.gene004693.t1.exon2;Parent=MS.gene004693.t1 |
| chr1.1 | CDS | 54838255 | 54838603 | 54838255 | ID=cds.MS.gene004693.t1;Parent=MS.gene004693.t1 |
| chr1.1 | exon | 54837122 | 54837398 | 54837122 | ID=MS.gene004693.t1.exon3;Parent=MS.gene004693.t1 |
| chr1.1 | CDS | 54837122 | 54837398 | 54837122 | ID=cds.MS.gene004693.t1;Parent=MS.gene004693.t1 |
| chr1.1 | exon | 54836501 | 54836691 | 54836501 | ID=MS.gene004693.t1.exon4;Parent=MS.gene004693.t1 |
| chr1.1 | CDS | 54836501 | 54836691 | 54836501 | ID=cds.MS.gene004693.t1;Parent=MS.gene004693.t1 |
| Gene Sequence |
| Protein sequence |
