AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004776

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004776.t1 MTR_1g074370 98.122 213 4 0 1 213 1 213 2.16e-154 426
MS.gene004776.t1 MTR_1g043350 61.429 210 64 4 8 205 6 210 5.38e-68 207
MS.gene004776.t1 MTR_1g070015 47.917 192 82 3 15 206 42 215 3.32e-52 167
MS.gene004776.t1 MTR_1g070000 47.423 194 83 4 15 207 42 217 1.64e-51 166
MS.gene004776.t1 MTR_4g054740 51.479 169 69 4 47 202 67 235 1.27e-50 164
MS.gene004776.t1 MTR_1g069985 55.346 159 62 4 52 206 54 207 8.15e-50 161
MS.gene004776.t1 MTR_1g069940 63.087 149 47 5 70 210 92 240 8.26e-49 159
MS.gene004776.t1 MTR_1g069945 59.877 162 54 5 52 202 76 237 1.13e-48 159
MS.gene004776.t1 MTR_4g054860 57.042 142 48 3 74 202 132 273 3.53e-48 159
MS.gene004776.t1 MTR_1g070020 57.246 138 56 2 66 202 63 198 7.28e-48 156
MS.gene004776.t1 MTR_4g054360 58.865 141 47 4 73 202 124 264 1.96e-47 157
MS.gene004776.t1 MTR_7g096830 55.882 170 60 5 47 202 68 236 3.53e-46 153
MS.gene004776.t1 MTR_1g070035 46.154 195 86 5 28 206 21 212 5.91e-44 147
MS.gene004776.t1 MTR_7g096780 60.563 142 50 3 68 205 80 219 1.08e-43 146
MS.gene004776.t1 MTR_1g070045 55.319 141 54 5 29 167 25 158 2.57e-42 140
MS.gene004776.t1 MTR_4g088005 58.654 104 42 1 28 130 11 114 5.13e-42 138
MS.gene004776.t1 MTR_2g015040 57.895 114 41 2 28 134 11 124 6.85e-42 139
MS.gene004776.t1 MTR_2g015050 46.154 169 73 4 50 204 111 275 2.31e-36 129
MS.gene004776.t1 MTR_4g100380 46.528 144 39 3 28 133 62 205 1.69e-33 121
MS.gene004776.t1 MTR_8g006840 46.212 132 45 3 28 133 54 185 5.62e-31 112
MS.gene004776.t1 MTR_1g070070 69.620 79 21 1 57 132 2 80 8.31e-30 108
MS.gene004776.t1 MTR_7g096750 75.362 69 17 0 64 132 11 79 1.46e-29 107
MS.gene004776.t1 MTR_1g048610 59.140 93 34 2 55 143 69 161 1.91e-29 109
MS.gene004776.t1 MTR_7g081795 50.000 124 44 4 16 130 3 117 4.06e-29 108
MS.gene004776.t1 MTR_8g006815 53.571 112 49 1 61 169 84 195 4.13e-29 108
MS.gene004776.t1 MTR_7g096700 67.901 81 19 2 52 132 6 79 8.42e-29 105
MS.gene004776.t1 MTR_1g090290 57.895 95 38 1 51 143 89 183 6.32e-28 104
MS.gene004776.t1 MTR_1g074230 78.333 60 13 0 73 132 19 78 1.11e-27 102
MS.gene004776.t1 MTR_4g100420 53.763 93 43 0 59 151 143 235 1.24e-27 106
MS.gene004776.t1 MTR_1g074310 62.500 72 27 0 61 132 9 80 1.74e-27 102
MS.gene004776.t1 MTR_7g081815 63.855 83 25 2 48 130 41 118 1.91e-27 103
MS.gene004776.t1 MTR_4g100450 64.000 75 27 0 59 133 140 214 2.72e-27 105
MS.gene004776.t1 MTR_7g081805 60.714 84 29 1 47 130 39 118 5.38e-27 102
MS.gene004776.t1 MTR_8g006825 52.632 95 40 2 43 133 63 156 4.02e-26 100
MS.gene004776.t1 MTR_7g021010 52.174 92 40 2 47 135 22 112 6.33e-26 99.0
MS.gene004776.t1 MTR_7g020980 52.174 92 40 2 47 135 22 112 7.12e-26 99.0
MS.gene004776.t1 MTR_7g021010 61.972 71 26 1 65 135 4 73 1.56e-25 97.1
MS.gene004776.t1 MTR_1g074250 64.000 75 19 2 64 130 3 77 9.91e-25 94.7
MS.gene004776.t1 MTR_2g438180 65.625 64 22 0 69 132 10 73 5.96e-23 90.1
MS.gene004776.t1 MTR_1g069960 76.667 60 14 0 73 132 27 86 1.11e-22 89.7
MS.gene004776.t1 MTR_7g096810 61.842 76 29 0 64 139 4 79 1.58e-22 89.0
MS.gene004776.t1 MTR_2g078680 52.326 86 40 1 48 133 6 90 1.63e-22 90.9
MS.gene004776.t1 MTR_1g040430 59.551 89 36 0 44 132 82 170 4.75e-22 89.7
MS.gene004776.t1 MTR_4g086160 45.690 116 40 4 73 177 96 199 1.51e-21 89.0
MS.gene004776.t1 MTR_2g014300 54.762 84 36 2 61 143 3 85 1.84e-21 87.4
MS.gene004776.t1 MTR_3g053690 64.062 64 22 1 69 132 23 85 3.86e-21 87.8
MS.gene004776.t1 MTR_5g085070 65.079 63 21 1 69 131 47 108 5.44e-21 88.6
MS.gene004776.t1 MTR_4g086165 64.286 70 22 2 69 138 78 144 5.52e-21 87.0
MS.gene004776.t1 MTR_8g092460 58.571 70 28 1 64 133 136 204 5.62e-21 89.0
MS.gene004776.t1 MTR_5g009620 66.102 59 19 1 71 129 110 167 6.69e-21 89.0
MS.gene004776.t1 MTR_4g086190 65.217 69 21 2 73 141 96 161 9.09e-21 87.0
MS.gene004776.t1 MTR_5g085100 65.079 63 21 1 69 131 42 103 1.23e-20 87.8
MS.gene004776.t1 MTR_2g105380 54.545 77 34 1 56 132 100 175 6.07e-20 87.0
MS.gene004776.t1 MTR_1g087920 65.000 60 20 1 73 132 77 135 7.34e-20 85.9
MS.gene004776.t1 MTR_2g014340 61.538 65 24 1 69 133 15 78 9.00e-20 83.6
MS.gene004776.t1 MTR_8g022820 59.722 72 27 2 62 132 111 181 9.86e-20 86.3
MS.gene004776.t1 MTR_8g022820 59.722 72 27 2 62 132 112 182 1.10e-19 86.3
MS.gene004776.t1 MTR_8g022820 59.722 72 27 2 62 132 112 182 1.10e-19 86.3
MS.gene004776.t1 MTR_1g090170 48.889 90 41 2 45 130 120 208 1.17e-19 85.5
MS.gene004776.t1 MTR_2g435590 67.241 58 18 1 73 130 96 152 1.29e-19 84.3
MS.gene004776.t1 MTR_1g090170 48.889 90 41 2 45 130 207 295 1.56e-19 85.9
MS.gene004776.t1 MTR_5g062700 62.500 64 23 1 67 130 167 229 1.70e-19 85.5
MS.gene004776.t1 MTR_4g086220 67.797 59 18 1 73 131 96 153 1.88e-19 83.6
MS.gene004776.t1 MTR_8g069360 70.175 57 16 1 73 129 44 99 2.53e-19 85.5
MS.gene004776.t1 MTR_3g090760 54.412 68 30 1 71 138 111 177 3.38e-19 84.7
MS.gene004776.t1 MTR_1g028560 61.667 60 22 1 70 129 112 170 6.04e-19 84.0
MS.gene004776.t1 MTR_2g090235 66.667 60 19 1 71 130 216 274 6.48e-19 84.3
MS.gene004776.t1 MTR_5g075570 53.731 67 30 1 68 134 119 184 7.42e-19 82.8
MS.gene004776.t1 MTR_3g074130 65.000 60 20 1 71 130 148 206 8.47e-19 83.6
MS.gene004776.t1 MTR_4g078710 48.864 88 41 2 43 130 1 84 1.02e-18 81.3
MS.gene004776.t1 MTR_4g119270 51.852 81 35 2 49 129 32 108 1.16e-18 83.2
MS.gene004776.t1 MTR_0939s0010 57.500 80 28 3 73 147 65 143 1.29e-18 80.5
MS.gene004776.t1 MTR_2g089170 60.938 64 23 2 73 135 65 127 4.97e-18 78.6
MS.gene004776.t1 MTR_8g090350 58.730 63 25 1 68 130 108 169 6.34e-18 80.5
MS.gene004776.t1 MTR_7g084370 70.690 58 14 2 73 129 42 97 8.35e-18 80.1
MS.gene004776.t1 MTR_5g083340 63.934 61 21 1 70 130 82 141 8.66e-18 81.3
MS.gene004776.t1 MTR_8g099215 59.322 59 23 1 71 129 105 162 8.69e-18 80.5
MS.gene004776.t1 MTR_2g019750 50.633 79 35 2 51 129 31 105 9.49e-18 80.1
MS.gene004776.t1 MTR_8g006410 46.914 81 41 2 56 136 35 113 2.31e-17 77.4
MS.gene004776.t1 MTR_7g046260 46.512 86 41 2 45 130 37 117 2.59e-17 77.8
MS.gene004776.t1 MTR_5g032820 66.667 57 18 1 73 129 46 101 3.80e-17 79.0
MS.gene004776.t1 MTR_3g110205 56.452 62 26 1 69 130 39 99 3.84e-17 76.3
MS.gene004776.t1 MTR_4g111915 47.561 82 39 2 49 130 32 109 4.00e-17 75.1
MS.gene004776.t1 MTR_6g088405 60.345 58 22 1 73 130 44 100 4.43e-17 77.0
MS.gene004776.t1 MTR_3g102100 50.000 68 33 1 63 130 35 101 4.59e-17 75.9
MS.gene004776.t1 MTR_8g013860 53.226 62 28 1 69 130 43 103 7.06e-17 75.9
MS.gene004776.t1 MTR_5g008540 49.315 73 36 1 67 139 18 89 9.28e-17 72.8
MS.gene004776.t1 MTR_4g112490 47.561 82 39 2 49 130 32 109 1.91e-16 74.7
MS.gene004776.t1 MTR_2g101340 56.897 58 24 1 73 130 41 97 1.96e-16 74.7
MS.gene004776.t1 MTR_8g102800 58.621 58 23 1 73 130 37 93 2.92e-16 75.1
MS.gene004776.t1 MTR_2g043050 50.667 75 32 2 60 130 2 75 5.69e-16 73.9
MS.gene004776.t1 MTR_4g100650 51.515 66 31 1 65 130 66 130 7.74e-16 74.3
MS.gene004776.t1 MTR_1g019110 48.571 70 35 1 71 140 42 110 8.65e-16 72.4
MS.gene004776.t1 MTR_4g035430 54.098 61 27 1 73 133 32 91 9.21e-16 73.6
MS.gene004776.t1 MTR_4g114570 53.968 63 28 1 69 131 3 64 1.08e-15 73.2
MS.gene004776.t1 MTR_4g010640 55.556 63 27 1 69 131 3 64 1.77e-15 72.4
MS.gene004776.t1 MTR_7g011630 51.899 79 34 3 54 129 20 97 2.24e-15 74.3
MS.gene004776.t1 MTR_5g012910 53.226 62 28 1 69 130 24 84 2.24e-15 71.6
MS.gene004776.t1 MTR_2g103700 52.381 63 29 1 71 133 5 66 2.90e-15 71.2
MS.gene004776.t1 MTR_6g029180 38.053 113 54 2 73 185 33 129 5.71e-15 72.4
MS.gene004776.t1 MTR_7g117690 50.820 61 29 1 73 133 28 87 5.82e-15 70.1
MS.gene004776.t1 MTR_8g027465 47.761 67 34 1 69 135 35 100 7.89e-15 70.1
MS.gene004776.t1 MTR_7g092190 55.172 58 25 1 73 130 30 86 8.02e-15 71.6
MS.gene004776.t1 MTR_5g016750 52.459 61 28 1 70 130 22 81 8.60e-15 70.1
MS.gene004776.t1 MTR_5g083330 56.452 62 26 1 69 130 31 91 1.12e-14 71.6
MS.gene004776.t1 MTR_3g106290 52.381 63 29 1 68 130 3 64 1.25e-14 69.7
MS.gene004776.t1 MTR_7g085810 42.529 87 40 2 73 150 30 115 1.33e-14 70.9
MS.gene004776.t1 MTR_2g043030 55.172 58 25 1 73 130 19 75 1.54e-14 69.7
MS.gene004776.t1 MTR_1g014860 43.902 82 39 2 49 130 4 78 1.62e-14 70.1
MS.gene004776.t1 MTR_2g016730 48.611 72 36 1 60 131 10 80 2.94e-14 70.5
MS.gene004776.t1 MTR_6g012970 53.226 62 28 1 68 129 33 93 3.20e-14 70.9
MS.gene004776.t1 MTR_5g008470 53.571 56 25 1 75 130 77 131 3.22e-14 68.6
MS.gene004776.t1 MTR_8g085960 54.386 57 25 1 73 129 25 80 3.56e-14 69.3
MS.gene004776.t1 MTR_4g008860 52.381 63 29 1 68 130 3 64 4.78e-14 68.2
MS.gene004776.t1 MTR_1g014800 41.026 78 44 2 53 130 12 87 5.96e-14 68.6
MS.gene004776.t1 MTR_1g074280 61.667 60 23 0 73 132 17 76 7.26e-14 65.9
MS.gene004776.t1 MTR_5g085125 55.556 63 27 1 69 131 12 73 7.73e-14 67.0
MS.gene004776.t1 MTR_1g014820 43.836 73 38 2 60 130 12 83 7.94e-14 68.9
MS.gene004776.t1 MTR_3g105510 50.000 66 30 2 65 129 29 92 8.36e-14 68.6
MS.gene004776.t1 MTR_7g070220 55.385 65 21 2 72 129 77 140 1.10e-13 69.3
MS.gene004776.t1 MTR_8g032610 42.105 76 43 1 71 146 25 99 1.13e-13 68.9
MS.gene004776.t1 MTR_1g014780 42.683 82 40 2 49 130 20 94 1.15e-13 67.8
MS.gene004776.t1 MTR_5g082950 59.649 57 22 1 73 129 66 121 1.48e-13 68.6
MS.gene004776.t1 MTR_3g098580 61.538 65 24 1 69 133 72 135 1.58e-13 67.8
MS.gene004776.t1 MTR_4g082345 51.613 62 29 1 68 129 43 103 1.78e-13 68.2
MS.gene004776.t1 MTR_2g043040 53.448 58 26 1 73 130 19 75 1.82e-13 67.4
MS.gene004776.t1 MTR_1g074290 63.333 60 22 0 73 132 17 76 2.28e-13 65.9
MS.gene004776.t1 MTR_6g088425 59.677 62 24 1 69 130 45 105 2.35e-13 67.0
MS.gene004776.t1 MTR_3g095190 48.039 102 41 3 40 130 126 226 5.26e-13 67.4
MS.gene004776.t1 MTR_6g033255 66.154 65 21 1 69 133 16 79 8.97e-13 65.1
MS.gene004776.t1 MTR_8g023680 69.048 42 12 1 73 114 116 156 1.01e-12 66.2
MS.gene004776.t1 MTR_1g097190 52.727 55 25 1 68 122 18 71 1.10e-12 63.2
MS.gene004776.t1 MTR_2g043020 51.724 58 27 1 73 130 19 75 1.24e-12 64.7
MS.gene004776.t1 MTR_1g101600 52.632 57 26 1 73 129 41 96 1.71e-12 64.3
MS.gene004776.t1 MTR_1g006660 55.714 70 28 2 69 138 43 109 2.55e-12 64.3
MS.gene004776.t1 MTR_6g466130 42.529 87 48 2 43 129 37 121 2.61e-12 63.9
MS.gene004776.t1 MTR_4g102670 46.032 63 32 2 68 130 10 70 3.62e-12 62.8
MS.gene004776.t1 MTR_1g074270 65.909 44 14 1 88 130 22 65 8.52e-12 60.5
MS.gene004776.t1 MTR_2g085015 44.068 59 32 1 73 130 47 105 1.68e-11 61.6
MS.gene004776.t1 MTR_6g465510 47.619 63 32 1 73 135 33 94 2.02e-11 61.2
MS.gene004776.t1 MTR_6g465430 50.000 62 28 2 69 129 50 109 3.44e-11 61.2
MS.gene004776.t1 MTR_1g105400 32.039 103 58 2 60 162 102 192 4.08e-11 61.6
MS.gene004776.t1 MTR_4g134870 73.684 38 10 0 89 126 331 368 5.95e-11 61.2
MS.gene004776.t1 MTR_6g466000 40.230 87 50 2 43 129 28 112 7.18e-11 60.1
MS.gene004776.t1 MTR_6g465690 41.176 85 48 2 45 129 36 118 8.06e-11 60.5
MS.gene004776.t1 MTR_6g465530 50.877 57 27 1 73 129 33 88 8.08e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004776.t1 AT3G23240 64.444 180 61 2 28 206 36 213 4.16e-75 226
MS.gene004776.t1 AT2G31230 52.151 186 53 4 52 205 61 242 2.07e-52 169
MS.gene004776.t1 AT1G06160 49.451 182 61 3 53 204 62 242 4.92e-39 135
MS.gene004776.t1 AT5G47220 50.000 130 41 3 28 133 48 177 2.76e-35 125
MS.gene004776.t1 AT4G17500 47.826 138 40 2 28 133 71 208 1.25e-34 124
MS.gene004776.t1 AT2G44840 48.739 119 48 2 28 133 34 152 4.31e-30 111
MS.gene004776.t1 AT5G43410 80.000 60 12 0 73 132 15 74 7.30e-30 107
MS.gene004776.t1 AT3G23230 71.875 64 18 0 69 132 16 79 5.64e-28 103
MS.gene004776.t1 AT5G47230 46.923 130 58 3 15 133 87 216 6.00e-28 107
MS.gene004776.t1 AT5G51190 69.841 63 19 0 70 132 69 131 9.42e-28 105
MS.gene004776.t1 AT4G18450 34.848 198 66 4 69 204 106 302 7.70e-27 104
MS.gene004776.t1 AT4G17490 69.231 65 20 0 69 133 133 197 1.44e-26 103
MS.gene004776.t1 AT5G61600 65.079 63 22 0 71 133 86 148 7.72e-26 100
MS.gene004776.t1 AT3G16770 58.824 85 29 3 51 130 52 135 1.24e-24 97.8
MS.gene004776.t1 AT5G07580 59.494 79 29 1 54 132 94 169 1.65e-24 96.3
MS.gene004776.t1 AT2G33710 66.154 65 21 1 69 133 66 129 2.49e-24 96.3
MS.gene004776.t1 AT2G33710 66.154 65 21 1 69 133 66 129 2.51e-24 96.3
MS.gene004776.t1 AT5G13330 53.846 78 34 2 56 133 23 98 3.06e-23 93.2
MS.gene004776.t1 AT3G23220 74.603 63 16 0 70 132 11 73 5.37e-23 90.5
MS.gene004776.t1 AT1G04370 73.438 64 17 0 69 132 16 79 1.11e-22 89.4
MS.gene004776.t1 AT5G61890 61.538 65 24 1 69 133 86 149 5.37e-22 90.5
MS.gene004776.t1 AT2G47520 57.143 77 30 2 62 136 37 112 8.51e-22 88.2
MS.gene004776.t1 AT4G11140 55.405 74 32 1 71 144 85 157 3.75e-21 89.4
MS.gene004776.t1 AT5G44210 42.241 116 63 2 68 183 28 139 4.04e-21 87.4
MS.gene004776.t1 AT4G28140 58.750 80 30 3 71 148 141 219 4.71e-21 89.0
MS.gene004776.t1 AT3G20310 52.874 87 40 1 69 155 23 108 1.31e-20 87.0
MS.gene004776.t1 AT2G22200 61.429 70 22 3 73 142 71 135 1.70e-20 87.0
MS.gene004776.t1 AT1G36060 65.625 64 21 1 68 131 138 200 1.70e-20 87.8
MS.gene004776.t1 AT1G50640 55.000 80 35 1 53 132 8 86 1.78e-20 86.3
MS.gene004776.t1 AT1G03800 59.701 67 26 1 65 131 45 110 2.37e-20 86.3
MS.gene004776.t1 AT1G72360 48.750 80 40 1 53 132 54 132 2.93e-20 86.3
MS.gene004776.t1 AT3G15210 56.410 78 30 2 69 146 21 94 3.15e-20 85.5
MS.gene004776.t1 AT3G61630 51.220 82 35 2 69 146 101 181 4.26e-20 86.7
MS.gene004776.t1 AT1G72360 54.167 72 32 1 61 132 13 83 4.90e-20 84.7
MS.gene004776.t1 AT1G22190 51.190 84 38 2 47 130 59 139 5.04e-20 85.5
MS.gene004776.t1 AT1G72360 53.086 81 36 2 53 132 55 134 9.22e-20 85.1
MS.gene004776.t1 AT4G27950 51.250 80 33 2 53 132 103 176 1.18e-19 85.9
MS.gene004776.t1 AT5G65130 62.121 66 23 2 71 136 109 172 1.22e-19 84.7
MS.gene004776.t1 AT5G65130 62.121 66 23 2 71 136 111 174 1.23e-19 85.1
MS.gene004776.t1 AT1G28360 62.903 62 22 1 69 130 8 68 1.32e-19 82.8
MS.gene004776.t1 AT2G20880 47.312 93 41 2 38 130 159 243 2.03e-19 85.1
MS.gene004776.t1 AT1G78080 55.696 79 32 2 68 146 147 222 2.04e-19 85.1
MS.gene004776.t1 AT4G13620 65.000 60 20 1 71 130 230 288 3.96e-19 84.7
MS.gene004776.t1 AT5G61590 59.740 77 29 1 58 132 90 166 4.00e-19 82.0
MS.gene004776.t1 AT5G18560 60.294 68 23 2 62 129 47 110 7.13e-19 84.0
MS.gene004776.t1 AT4G39780 62.295 61 22 1 70 130 90 149 7.32e-19 82.8
MS.gene004776.t1 AT5G13910 53.750 80 32 2 50 129 1 75 8.04e-19 81.3
MS.gene004776.t1 AT4G23750 52.778 72 33 1 60 131 109 179 1.07e-18 83.2
MS.gene004776.t1 AT4G23750 52.778 72 33 1 60 131 109 179 1.07e-18 83.2
MS.gene004776.t1 AT2G46310 37.086 151 67 7 73 206 99 238 1.14e-18 82.4
MS.gene004776.t1 AT1G28370 45.263 95 48 2 36 130 24 114 1.58e-18 80.5
MS.gene004776.t1 AT1G28370 53.247 77 32 2 54 130 4 76 1.60e-18 79.7
MS.gene004776.t1 AT4G31060 51.471 68 32 1 65 132 19 85 2.66e-18 79.3
MS.gene004776.t1 AT4G32800 55.882 68 29 1 63 130 9 75 3.20e-18 80.1
MS.gene004776.t1 AT4G06746 52.239 67 31 1 70 136 33 98 6.54e-18 77.4
MS.gene004776.t1 AT5G53290 57.377 61 25 1 71 131 123 182 8.39e-18 80.9
MS.gene004776.t1 AT1G28160 63.934 61 21 1 69 129 35 94 9.19e-18 79.3
MS.gene004776.t1 AT5G25810 54.054 74 33 1 57 130 20 92 1.08e-17 78.6
MS.gene004776.t1 AT5G25390 60.656 61 23 1 71 131 5 64 3.93e-17 76.3
MS.gene004776.t1 AT1G12890 57.353 68 28 1 62 129 10 76 4.15e-17 77.0
MS.gene004776.t1 AT1G12980 59.375 64 23 2 73 134 57 119 4.25e-17 78.6
MS.gene004776.t1 AT2G25820 62.069 58 21 1 73 130 26 82 6.80e-17 76.6
MS.gene004776.t1 AT1G24590 66.667 57 18 1 73 129 58 113 7.05e-17 77.8
MS.gene004776.t1 AT5G25390 59.016 61 21 1 71 131 5 61 7.14e-17 75.5
MS.gene004776.t1 AT3G16280 58.621 58 23 1 73 130 61 117 8.46e-17 76.6
MS.gene004776.t1 AT3G16280 58.621 58 23 1 73 130 79 135 8.57e-17 76.6
MS.gene004776.t1 AT3G11020 58.462 65 26 1 72 136 77 140 9.02e-17 77.8
MS.gene004776.t1 AT1G22985 58.065 62 24 1 70 129 72 133 1.08e-16 74.7
MS.gene004776.t1 AT3G50260 44.737 76 41 1 68 143 16 90 1.78e-16 73.9
MS.gene004776.t1 AT1G46768 53.030 66 30 1 71 136 29 93 1.82e-16 73.9
MS.gene004776.t1 AT1G46768 53.030 66 30 1 71 136 29 93 1.82e-16 73.9
MS.gene004776.t1 AT1G46768 53.030 66 30 1 71 136 29 93 1.83e-16 73.6
MS.gene004776.t1 AT4G36900 52.381 63 29 1 68 130 25 86 1.91e-16 74.7
MS.gene004776.t1 AT5G11590 56.452 62 26 1 69 130 47 107 2.36e-16 75.5
MS.gene004776.t1 AT1G71450 58.333 60 22 2 72 130 23 80 2.71e-16 73.9
MS.gene004776.t1 AT5G67190 46.575 73 38 1 68 140 16 87 2.85e-16 73.9
MS.gene004776.t1 AT4G16750 46.753 77 40 1 54 130 21 96 3.28e-16 73.6
MS.gene004776.t1 AT2G23340 42.105 95 49 2 68 162 23 111 4.30e-16 73.2
MS.gene004776.t1 AT1G75490 57.627 59 24 1 72 130 41 98 6.38e-16 73.6
MS.gene004776.t1 AT5G05410 61.017 59 22 1 72 130 78 135 7.25e-16 75.1
MS.gene004776.t1 AT2G35700 53.226 62 28 1 69 130 41 101 7.37e-16 73.2
MS.gene004776.t1 AT2G44940 53.226 62 28 1 69 130 96 156 1.00e-15 74.3
MS.gene004776.t1 AT5G05410 61.017 59 22 1 72 130 78 135 1.01e-15 74.7
MS.gene004776.t1 AT5G64750 63.793 58 18 2 80 135 192 248 1.37e-15 74.7
MS.gene004776.t1 AT3G60490 55.932 59 25 1 72 130 70 127 1.68e-15 73.2
MS.gene004776.t1 AT3G57600 55.172 58 25 1 73 130 28 84 2.76e-15 73.2
MS.gene004776.t1 AT2G40340 58.209 67 26 2 73 139 14 78 3.07e-15 72.8
MS.gene004776.t1 AT2G40340 58.209 67 26 2 73 139 14 78 3.07e-15 72.8
MS.gene004776.t1 AT2G40340 58.209 67 26 2 73 139 14 78 3.07e-15 72.8
MS.gene004776.t1 AT5G07310 66.129 62 20 1 69 130 88 148 4.10e-15 72.4
MS.gene004776.t1 AT4G34410 69.492 59 17 1 72 130 135 192 4.39e-15 72.4
MS.gene004776.t1 AT2G40340 58.209 67 26 2 73 139 72 136 4.73e-15 72.8
MS.gene004776.t1 AT2G40340 58.209 67 26 2 73 139 72 136 4.84e-15 73.2
MS.gene004776.t1 AT1G01250 52.308 65 30 1 69 133 41 104 4.95e-15 70.9
MS.gene004776.t1 AT5G50080 66.154 65 21 1 69 133 82 145 5.24e-15 71.6
MS.gene004776.t1 AT5G50080 66.154 65 21 1 69 133 73 136 5.38e-15 71.2
MS.gene004776.t1 AT1G71130 53.731 67 25 2 68 129 74 139 5.45e-15 70.1
MS.gene004776.t1 AT2G40340 58.209 67 26 2 73 139 79 143 5.56e-15 72.8
MS.gene004776.t1 AT1G15360 52.381 63 29 1 69 131 3 64 7.64e-15 70.5
MS.gene004776.t1 AT1G15360 52.381 63 29 1 69 131 3 64 7.64e-15 70.5
MS.gene004776.t1 AT1G43160 60.000 70 27 1 69 138 57 125 9.87e-15 70.1
MS.gene004776.t1 AT2G40350 55.932 59 25 1 73 131 67 124 1.17e-14 68.9
MS.gene004776.t1 AT2G40350 55.932 59 25 1 73 131 74 131 1.21e-14 69.3
MS.gene004776.t1 AT5G19790 48.101 79 37 3 51 129 3 77 2.07e-14 70.1
MS.gene004776.t1 AT1G53170 48.352 91 46 1 43 133 1 90 4.51e-14 68.2
MS.gene004776.t1 AT3G14230 54.321 81 36 1 52 132 102 181 5.63e-14 70.1
MS.gene004776.t1 AT3G14230 54.321 81 36 1 52 132 103 182 5.71e-14 70.1
MS.gene004776.t1 AT3G14230 54.321 81 36 1 52 132 107 186 6.31e-14 70.1
MS.gene004776.t1 AT5G21960 55.932 59 23 2 73 130 7 63 6.54e-14 68.2
MS.gene004776.t1 AT4G25480 47.887 71 36 1 73 143 51 120 6.67e-14 68.2
MS.gene004776.t1 AT5G18450 53.448 58 26 1 72 129 33 89 7.79e-14 69.3
MS.gene004776.t1 AT1G74930 44.444 81 41 3 50 130 1 77 1.32e-13 67.0
MS.gene004776.t1 AT4G25490 46.479 71 37 1 73 143 48 117 1.95e-13 67.0
MS.gene004776.t1 AT5G25190 50.794 63 30 1 68 130 3 64 2.29e-13 66.2
MS.gene004776.t1 AT4G25470 46.479 71 37 1 73 143 51 120 4.59e-13 65.9
MS.gene004776.t1 AT1G21910 42.667 75 42 1 73 147 50 123 5.38e-13 65.9
MS.gene004776.t1 AT1G77200 53.968 63 28 1 68 130 38 99 8.96e-13 65.5
MS.gene004776.t1 AT1G53910 58.824 68 27 1 68 135 118 184 9.58e-13 66.6
MS.gene004776.t1 AT1G53910 58.824 68 27 1 68 135 120 186 9.65e-13 66.6
MS.gene004776.t1 AT1G53910 58.824 68 27 1 68 135 120 186 9.65e-13 66.6
MS.gene004776.t1 AT5G51990 45.070 71 38 1 73 143 54 123 1.15e-12 65.1
MS.gene004776.t1 AT1G19210 46.774 62 30 2 70 130 9 68 2.79e-12 63.2
MS.gene004776.t1 AT1G22810 44.286 70 34 3 64 130 5 72 3.77e-12 62.0
MS.gene004776.t1 AT2G36450 50.794 63 29 2 69 130 11 72 1.20e-11 61.6
MS.gene004776.t1 AT3G54320 41.463 82 40 2 68 141 61 142 1.79e-11 63.2
MS.gene004776.t1 AT3G54320 41.463 82 40 2 68 141 61 142 1.82e-11 63.2
MS.gene004776.t1 AT1G12610 45.902 61 32 1 69 129 26 85 3.64e-11 60.8
MS.gene004776.t1 AT5G65510 33.846 130 68 4 47 162 142 267 4.89e-11 61.2
MS.gene004776.t1 AT5G65510 33.846 130 68 4 47 162 200 325 5.68e-11 61.6
MS.gene004776.t1 AT5G65510 33.846 130 68 4 47 162 200 325 5.68e-11 61.6
MS.gene004776.t1 AT1G63030 50.877 57 27 1 73 129 30 85 5.89e-11 59.7
MS.gene004776.t1 AT1G63030 50.877 57 27 1 73 129 30 85 5.89e-11 59.7
MS.gene004776.t1 AT1G71520 43.939 66 30 3 70 130 11 74 6.56e-11 58.5
MS.gene004776.t1 AT5G65510 33.846 130 68 4 47 162 142 267 7.10e-11 61.2
MS.gene004776.t1 AT1G80580 41.935 124 55 4 20 131 55 173 7.33e-11 60.5

Find 49 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATCTTGGTGCTGATTATT+TGG 0.227126 1.4:+61076360 MS.gene004776:CDS
TTCGGGATCGTTCTCGTTGA+AGG 0.322334 1.4:-61075873 None:intergenic
AAATCTGAAGTGGAAGAGTT+TGG 0.342337 1.4:-61075812 None:intergenic
CCCCTGTTGTTGCTCTTAAG+AGG 0.345190 1.4:+61076242 MS.gene004776:CDS
AGAACAAAGAAAGAGATATT+AGG 0.361072 1.4:+61076299 MS.gene004776:CDS
CATTCCTTGAGAAGAAAGAT+TGG 0.376804 1.4:+61076268 MS.gene004776:CDS
GCTGTTGTGTTTGAAGATCT+TGG 0.410603 1.4:+61076346 MS.gene004776:CDS
TAGTGCGGAAGCTGCTGCTT+TGG 0.417462 1.4:+61076099 MS.gene004776:CDS
GAAATTTGCAGCAGAGATAA+GGG 0.426052 1.4:+61076033 MS.gene004776:CDS
GGAAATTTGCAGCAGAGATA+AGG 0.428164 1.4:+61076032 MS.gene004776:CDS
TTCCTCTTAAGAGCAACAAC+AGG 0.438452 1.4:-61076244 None:intergenic
ACCGTAGAGAAGCATCTCTT+CGG 0.441401 1.4:-61075891 None:intergenic
CCGTAGAGAAGCATCTCTTC+GGG 0.451128 1.4:-61075890 None:intergenic
TCGGGATCGTTCTCGTTGAA+GGG 0.456729 1.4:-61075872 None:intergenic
TGTGATGATGGTTCTGAAGA+TGG 0.458346 1.4:+61076214 MS.gene004776:CDS
GAAACCAATCTTTCTTCTCA+AGG 0.462212 1.4:-61076272 None:intergenic
GGGAAGATAGTTGAATTCAT+AGG 0.463766 1.4:-61075852 None:intergenic
GATTCTCTAACAATCTCAAC+AGG 0.465175 1.4:-61076175 None:intergenic
AGTGGAAGAGTTTGGAATTG+AGG 0.469757 1.4:-61075804 None:intergenic
AATGGAATGAGGGTGTGGTT+AGG 0.473471 1.4:+61076067 MS.gene004776:CDS
ATAGTTGAATTCATAGGATG+AGG 0.493508 1.4:-61075846 None:intergenic
AGAAGTCGTACCGAGGTGTA+AGG 0.511464 1.4:+61075996 MS.gene004776:CDS
ATAAGGGATTCCACAAGGAA+TGG 0.523826 1.4:+61076049 MS.gene004776:CDS
TATTGCAGAAGAACCTCTCA+TGG 0.525031 1.4:-61076143 None:intergenic
TTTGAATTGATGAATCACTT+AGG 0.528305 1.4:-61076421 None:intergenic
CGGTACGACTTCTCCTTCCT+CGG 0.531935 1.4:-61075986 None:intergenic
CAAGGAATGGAATGAGGGTG+TGG 0.552065 1.4:+61076062 MS.gene004776:CDS
AGTGATATGAATTGTGATGA+TGG 0.552854 1.4:+61076202 MS.gene004776:CDS
CACCCTCATTCCATTCCTTG+TGG 0.559865 1.4:-61076059 None:intergenic
ATTCCACAAGGAATGGAATG+AGG 0.564320 1.4:+61076056 MS.gene004776:CDS
GTGATGATGGTTCTGAAGAT+GGG 0.570735 1.4:+61076215 MS.gene004776:CDS
CCCGAAGAGATGCTTCTCTA+CGG 0.577341 1.4:+61075890 MS.gene004776:CDS
AACTACAGTGAAGGAAGAAG+AGG 0.577423 1.4:+61075943 MS.gene004776:CDS
AGGTGTAAGGAGAAGACCAT+GGG 0.586469 1.4:+61076009 MS.gene004776:CDS
ATGAATCACTTAGGAGGACA+TGG 0.587678 1.4:-61076412 None:intergenic
GAATTGATGAATCACTTAGG+AGG 0.588183 1.4:-61076418 None:intergenic
TCCTCTTAAGAGCAACAACA+GGG 0.588563 1.4:-61076243 None:intergenic
TGAAGAGAATGAACCGAGGA+AGG 0.591846 1.4:+61075973 MS.gene004776:CDS
TTCCACAAGGAATGGAATGA+GGG 0.606311 1.4:+61076057 MS.gene004776:CDS
TCTCAACAAAACTACAGTGA+AGG 0.614019 1.4:+61075934 MS.gene004776:CDS
GTTAGGAACATTTGATAGTG+CGG 0.616093 1.4:+61076084 MS.gene004776:CDS
CAGAGATAAGGGATTCCACA+AGG 0.648483 1.4:+61076044 MS.gene004776:CDS
ATGGTCTTCTCCTTACACCT+CGG 0.652870 1.4:-61076006 None:intergenic
GAGGTGTAAGGAGAAGACCA+TGG 0.701326 1.4:+61076008 MS.gene004776:CDS
AGGAAGGAGAAGTCGTACCG+AGG 0.711683 1.4:+61075989 MS.gene004776:CDS
GTTCTGAAGAGAATGAACCG+AGG 0.733463 1.4:+61075969 MS.gene004776:CDS
CCTCTTAAGAGCAACAACAG+GGG 0.742459 1.4:-61076242 None:intergenic
GGTGTAAGGAGAAGACCATG+GGG 0.758068 1.4:+61076010 MS.gene004776:CDS
GTGTAAGGAGAAGACCATGG+GGG 0.800753 1.4:+61076011 MS.gene004776:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGAACAAAGAAAGAGATATT+AGG + chr1.4:61076299-61076318 MS.gene004776:CDS 25.0%
AGTGATATGAATTGTGATGA+TGG + chr1.4:61076202-61076221 MS.gene004776:CDS 30.0%
ATAGTTGAATTCATAGGATG+AGG - chr1.4:61075849-61075868 None:intergenic 30.0%
TTCTGATGAAAAATCTGAAG+TGG - chr1.4:61075825-61075844 None:intergenic 30.0%
!!! TGTAGTTTTGTTGAGATTGT+TGG - chr1.4:61075930-61075949 None:intergenic 30.0%
CATTCCTTGAGAAGAAAGAT+TGG + chr1.4:61076268-61076287 MS.gene004776:CDS 35.0%
GAAACCAATCTTTCTTCTCA+AGG - chr1.4:61076275-61076294 None:intergenic 35.0%
GAAATTTGCAGCAGAGATAA+GGG + chr1.4:61076033-61076052 MS.gene004776:CDS 35.0%
GATTCTCTAACAATCTCAAC+AGG - chr1.4:61076178-61076197 None:intergenic 35.0%
GGGAAGATAGTTGAATTCAT+AGG - chr1.4:61075855-61075874 None:intergenic 35.0%
TCTCAACAAAACTACAGTGA+AGG + chr1.4:61075934-61075953 MS.gene004776:CDS 35.0%
! AAATCTGAAGTGGAAGAGTT+TGG - chr1.4:61075815-61075834 None:intergenic 35.0%
!! AGATCTTGGTGCTGATTATT+TGG + chr1.4:61076360-61076379 MS.gene004776:CDS 35.0%
!! GTTAGGAACATTTGATAGTG+CGG + chr1.4:61076084-61076103 MS.gene004776:CDS 35.0%
AACTACAGTGAAGGAAGAAG+AGG + chr1.4:61075943-61075962 MS.gene004776:CDS 40.0%
ATAAGGGATTCCACAAGGAA+TGG + chr1.4:61076049-61076068 MS.gene004776:CDS 40.0%
ATTCCACAAGGAATGGAATG+AGG + chr1.4:61076056-61076075 MS.gene004776:CDS 40.0%
GCTGTTGTGTTTGAAGATCT+TGG + chr1.4:61076346-61076365 MS.gene004776:CDS 40.0%
GGAAATTTGCAGCAGAGATA+AGG + chr1.4:61076032-61076051 MS.gene004776:CDS 40.0%
TATTGCAGAAGAACCTCTCA+TGG - chr1.4:61076146-61076165 None:intergenic 40.0%
TCCTCTTAAGAGCAACAACA+GGG - chr1.4:61076246-61076265 None:intergenic 40.0%
TTCCACAAGGAATGGAATGA+GGG + chr1.4:61076057-61076076 MS.gene004776:CDS 40.0%
TTCCTCTTAAGAGCAACAAC+AGG - chr1.4:61076247-61076266 None:intergenic 40.0%
! AGTGGAAGAGTTTGGAATTG+AGG - chr1.4:61075807-61075826 None:intergenic 40.0%
!! GTGATGATGGTTCTGAAGAT+GGG + chr1.4:61076215-61076234 MS.gene004776:CDS 40.0%
!! TGTGATGATGGTTCTGAAGA+TGG + chr1.4:61076214-61076233 MS.gene004776:CDS 40.0%
AGGTGTAAGGAGAAGACCAT+GGG + chr1.4:61076009-61076028 MS.gene004776:CDS 45.0%
ATGGTCTTCTCCTTACACCT+CGG - chr1.4:61076009-61076028 None:intergenic 45.0%
CAGAGATAAGGGATTCCACA+AGG + chr1.4:61076044-61076063 MS.gene004776:CDS 45.0%
CCTCTTAAGAGCAACAACAG+GGG - chr1.4:61076245-61076264 None:intergenic 45.0%
TGAAGAGAATGAACCGAGGA+AGG + chr1.4:61075973-61075992 MS.gene004776:CDS 45.0%
! AATGGAATGAGGGTGTGGTT+AGG + chr1.4:61076067-61076086 MS.gene004776:CDS 45.0%
!! ACCGTAGAGAAGCATCTCTT+CGG - chr1.4:61075894-61075913 None:intergenic 45.0%
!! GTTCTGAAGAGAATGAACCG+AGG + chr1.4:61075969-61075988 MS.gene004776:CDS 45.0%
!!! CAAGCTGCTTTTTCCATGAG+AGG + chr1.4:61076130-61076149 MS.gene004776:CDS 45.0%
AGAAGTCGTACCGAGGTGTA+AGG + chr1.4:61075996-61076015 MS.gene004776:CDS 50.0%
CAAGGAATGGAATGAGGGTG+TGG + chr1.4:61076062-61076081 MS.gene004776:CDS 50.0%
CACCCTCATTCCATTCCTTG+TGG - chr1.4:61076062-61076081 None:intergenic 50.0%
CCCCTGTTGTTGCTCTTAAG+AGG + chr1.4:61076242-61076261 MS.gene004776:CDS 50.0%
CCCGAAGAGATGCTTCTCTA+CGG + chr1.4:61075890-61075909 MS.gene004776:CDS 50.0%
GAGGTGTAAGGAGAAGACCA+TGG + chr1.4:61076008-61076027 MS.gene004776:CDS 50.0%
GGTGTAAGGAGAAGACCATG+GGG + chr1.4:61076010-61076029 MS.gene004776:CDS 50.0%
GTGTAAGGAGAAGACCATGG+GGG + chr1.4:61076011-61076030 MS.gene004776:CDS 50.0%
TCGGGATCGTTCTCGTTGAA+GGG - chr1.4:61075875-61075894 None:intergenic 50.0%
TCTGCTGCAAATTTCCCCCA+TGG - chr1.4:61076028-61076047 None:intergenic 50.0%
TTCGGGATCGTTCTCGTTGA+AGG - chr1.4:61075876-61075895 None:intergenic 50.0%
!! CCGTAGAGAAGCATCTCTTC+GGG - chr1.4:61075893-61075912 None:intergenic 50.0%
AGGAAGGAGAAGTCGTACCG+AGG + chr1.4:61075989-61076008 MS.gene004776:CDS 55.0%
CGGTACGACTTCTCCTTCCT+CGG - chr1.4:61075989-61076008 None:intergenic 55.0%
! TAGTGCGGAAGCTGCTGCTT+TGG + chr1.4:61076099-61076118 MS.gene004776:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 61075788 61076429 61075788 ID=MS.gene004776
chr1.4 mRNA 61075788 61076429 61075788 ID=MS.gene004776.t1;Parent=MS.gene004776
chr1.4 exon 61075788 61076429 61075788 ID=MS.gene004776.t1.exon1;Parent=MS.gene004776.t1
chr1.4 CDS 61075788 61076429 61075788 ID=cds.MS.gene004776.t1;Parent=MS.gene004776.t1
Gene Sequence

>MS.gene004776

ATGGATTCAAGTTCAACCTCAATTCCAAACTCTTCCACTTCAGATTTTTCATCAGAATCCTCATCCTATGAATTCAACTATCTTCCCTTCAACGAGAACGATCCCGAAGAGATGCTTCTCTACGGTATGATCAACGACGCCAACAATCTCAACAAAACTACAGTGAAGGAAGAAGAGGTAAGTTCTGAAGAGAATGAACCGAGGAAGGAGAAGTCGTACCGAGGTGTAAGGAGAAGACCATGGGGGAAATTTGCAGCAGAGATAAGGGATTCCACAAGGAATGGAATGAGGGTGTGGTTAGGAACATTTGATAGTGCGGAAGCTGCTGCTTTGGCTTATGATCAAGCTGCTTTTTCCATGAGAGGTTCTTCTGCAATACTCAATTTTCCTGTTGAGATTGTTAGAGAATCACTTAGTGATATGAATTGTGATGATGGTTCTGAAGATGGGTGTTCCCCTGTTGTTGCTCTTAAGAGGAAACATTCCTTGAGAAGAAAGATTGGTTTCAAGAAGAACAAAGAAAGAGATATTAGGAGCAATAATAGTTCTGTTGATAATGCTGTTGTGTTTGAAGATCTTGGTGCTGATTATTTGGAACAATTGTTGATTTCATCTGATGAGTTTCCATGTCCTCCTAAGTGA
Protein sequence

>MS.gene004776.t1

MDSSSTSIPNSSTSDFSSESSSYEFNYLPFNENDPEEMLLYGMINDANNLNKTTVKEEEVSSEENEPRKEKSYRGVRRRPWGKFAAEIRDSTRNGMRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVEIVRESLSDMNCDDGSEDGCSPVVALKRKHSLRRKIGFKKNKERDIRSNNSSVDNAVVFEDLGADYLEQLLISSDEFPCPPK