Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005810.t1 | XP_013469351.1 | 96.5 | 607 | 20 | 1 | 1 | 607 | 1 | 606 | 0.00E+00 | 1106.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005810.t1 | Q0WQF7 | 69.0 | 542 | 167 | 1 | 67 | 607 | 77 | 618 | 3.9e-193 | 676.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005810.t1 | A0A072VN38 | 96.5 | 607 | 20 | 1 | 1 | 607 | 1 | 606 | 0.0e+00 | 1106.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056545 | MS.gene005810 | PPI |
| MS.gene005810 | MS.gene73119 | PPI |
| MS.gene035805 | MS.gene005810 | PPI |
| MS.gene005810 | MS.gene067972 | PPI |
| MS.gene005810 | MS.gene067902 | PPI |
| MS.gene067974 | MS.gene005810 | PPI |
| MS.gene067903 | MS.gene005810 | PPI |
| MS.gene83415 | MS.gene005810 | PPI |
| MS.gene005810 | MS.gene056542 | PPI |
| MS.gene064542 | MS.gene005810 | PPI |
| MS.gene056543 | MS.gene005810 | PPI |
| MS.gene005810 | MS.gene82963 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005810.t1 | MTR_1g091037 | 98.023 | 607 | 11 | 1 | 1 | 607 | 1 | 606 | 0.0 | 1204 |
| MS.gene005810.t1 | MTR_1g091037 | 96.748 | 615 | 11 | 2 | 1 | 607 | 1 | 614 | 0.0 | 1196 |
| MS.gene005810.t1 | MTR_8g018770 | 42.466 | 438 | 204 | 8 | 196 | 607 | 109 | 524 | 4.69e-105 | 328 |
| MS.gene005810.t1 | MTR_8g018770 | 64.130 | 92 | 32 | 1 | 67 | 157 | 105 | 196 | 7.76e-32 | 130 |
| MS.gene005810.t1 | MTR_1g111140 | 31.873 | 411 | 253 | 10 | 206 | 604 | 53 | 448 | 7.18e-49 | 177 |
| MS.gene005810.t1 | MTR_1g111140 | 46.154 | 78 | 41 | 1 | 80 | 157 | 53 | 129 | 2.15e-13 | 73.2 |
| MS.gene005810.t1 | MTR_1g096240 | 31.043 | 422 | 241 | 10 | 206 | 604 | 41 | 435 | 3.52e-41 | 155 |
| MS.gene005810.t1 | MTR_1g096240 | 48.750 | 80 | 38 | 2 | 80 | 158 | 41 | 118 | 7.37e-14 | 74.7 |
| MS.gene005810.t1 | MTR_5g093300 | 29.557 | 406 | 216 | 9 | 206 | 605 | 91 | 432 | 3.01e-38 | 147 |
| MS.gene005810.t1 | MTR_2g006820 | 30.049 | 406 | 215 | 12 | 206 | 605 | 88 | 430 | 7.67e-38 | 146 |
| MS.gene005810.t1 | MTR_4g120220 | 27.628 | 409 | 267 | 10 | 218 | 604 | 94 | 495 | 2.36e-32 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005810.t1 | AT3G52200 | 61.958 | 623 | 216 | 6 | 1 | 607 | 1 | 618 | 0.0 | 704 |
| MS.gene005810.t1 | AT3G52200 | 62.075 | 617 | 215 | 6 | 5 | 607 | 83 | 694 | 0.0 | 703 |
| MS.gene005810.t1 | AT3G13930 | 43.707 | 437 | 201 | 10 | 195 | 607 | 105 | 520 | 4.18e-107 | 333 |
| MS.gene005810.t1 | AT3G13930 | 66.667 | 93 | 30 | 1 | 67 | 158 | 102 | 194 | 3.27e-33 | 134 |
| MS.gene005810.t1 | AT1G54220 | 43.151 | 438 | 200 | 9 | 196 | 607 | 106 | 520 | 2.72e-106 | 331 |
| MS.gene005810.t1 | AT1G54220 | 47.826 | 161 | 62 | 5 | 4 | 157 | 48 | 193 | 8.44e-33 | 133 |
| MS.gene005810.t1 | AT1G54220 | 43.151 | 438 | 200 | 9 | 196 | 607 | 106 | 520 | 2.72e-106 | 331 |
| MS.gene005810.t1 | AT1G54220 | 47.826 | 161 | 62 | 5 | 4 | 157 | 48 | 193 | 8.44e-33 | 133 |
| MS.gene005810.t1 | AT3G25860 | 31.159 | 414 | 255 | 10 | 206 | 604 | 60 | 458 | 1.63e-40 | 154 |
| MS.gene005810.t1 | AT3G25860 | 45.714 | 70 | 37 | 1 | 80 | 149 | 60 | 128 | 1.46e-11 | 67.4 |
| MS.gene005810.t1 | AT1G34430 | 28.166 | 458 | 256 | 11 | 188 | 604 | 18 | 443 | 9.46e-38 | 146 |
| MS.gene005810.t1 | AT1G34430 | 45.000 | 80 | 43 | 1 | 80 | 159 | 44 | 122 | 2.48e-13 | 73.2 |
| MS.gene005810.t1 | AT3G06850 | 29.771 | 393 | 244 | 10 | 218 | 604 | 92 | 458 | 5.65e-37 | 144 |
| MS.gene005810.t1 | AT3G06850 | 29.771 | 393 | 244 | 10 | 218 | 604 | 92 | 458 | 5.65e-37 | 144 |
| MS.gene005810.t1 | AT4G26910 | 27.833 | 406 | 226 | 11 | 206 | 605 | 97 | 441 | 2.97e-32 | 130 |
| MS.gene005810.t1 | AT4G26910 | 27.833 | 406 | 226 | 11 | 206 | 605 | 96 | 440 | 3.82e-32 | 130 |
| MS.gene005810.t1 | AT4G26910 | 28.000 | 400 | 221 | 11 | 212 | 605 | 4 | 342 | 1.07e-31 | 127 |
| MS.gene005810.t1 | AT5G55070 | 34.906 | 212 | 123 | 5 | 400 | 605 | 239 | 441 | 1.65e-28 | 119 |
| MS.gene005810.t1 | AT5G55070 | 34.906 | 212 | 123 | 5 | 400 | 605 | 239 | 441 | 1.65e-28 | 119 |
Find 134 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGCAAAGTTGCTAATTT+TGG | 0.117845 | 1.1:+66845360 | MS.gene005810:CDS |
| GGATGACTCCTGCAGATTTC+TGG | 0.160996 | 1.1:+66843314 | MS.gene005810:intron |
| ATACTAACCCTTGACTTTAA+AGG | 0.161108 | 1.1:-66840906 | None:intergenic |
| GCATCTTGGTCTGGGCTTAC+TGG | 0.175983 | 1.1:+66840870 | MS.gene005810:CDS |
| CTTCCACCTCACATTGTTCT+TGG | 0.184031 | 1.1:+66844082 | MS.gene005810:CDS |
| TCCCTTAGAAAGGATCTTAA+AGG | 0.228041 | 1.1:+66846237 | MS.gene005810:CDS |
| TACCTTTAAGATCCTTTCTA+AGG | 0.259995 | 1.1:-66846239 | None:intergenic |
| ATCAGGCCTGCATCTTGGTC+TGG | 0.260034 | 1.1:+66840861 | MS.gene005810:intron |
| GTTAAATTCTTCTCGTCTTC+AGG | 0.260453 | 1.1:+66841007 | MS.gene005810:CDS |
| AACTGTTTACCATTCGCTTC+TGG | 0.264341 | 1.1:-66846432 | None:intergenic |
| GTTGGGTGGTCTTCTCCTTT+TGG | 0.268629 | 1.1:-66845282 | None:intergenic |
| ATGGAATAAATCCTTGAATT+AGG | 0.278347 | 1.1:-66840583 | None:intergenic |
| GGTGATTGCCAAGAGGTTAT+TGG | 0.280081 | 1.1:+66846062 | MS.gene005810:intron |
| CAGATTTCTGGCTAAGATAT+TGG | 0.285734 | 1.1:+66843326 | MS.gene005810:intron |
| AAAGTAGTTGAAGCAGTAAT+TGG | 0.307860 | 1.1:+66849424 | MS.gene005810:CDS |
| AAACTTACTGTTATTGCAAT+AGG | 0.309340 | 1.1:-66844997 | None:intergenic |
| GTTCTTTCTGCAATTAAATC+AGG | 0.315243 | 1.1:+66845448 | MS.gene005810:CDS |
| ACCTTGCGAATTTGACTATT+CGG | 0.317916 | 1.1:-66845592 | None:intergenic |
| ACCAAGGAAACATTGCTAAA+TGG | 0.325751 | 1.1:+66844215 | MS.gene005810:CDS |
| TCATTGGTAATGGGAATCTA+AGG | 0.326081 | 1.1:+66840605 | MS.gene005810:CDS |
| TCAATCGTAGAAGTTGTTTC+TGG | 0.331243 | 1.1:-66844049 | None:intergenic |
| TTTATTCCATCATTGGTAAT+GGG | 0.353338 | 1.1:+66840596 | MS.gene005810:CDS |
| TCAAGGATTTATTCCATCAT+TGG | 0.354152 | 1.1:+66840589 | MS.gene005810:CDS |
| CTTCAAGACTTTCAAATTCA+AGG | 0.354404 | 1.1:-66844454 | None:intergenic |
| GCCGATCATCGCGTCTTTGA+TGG | 0.355259 | 1.1:+66849580 | MS.gene005810:CDS |
| TCAGGCCTGCATCTTGGTCT+GGG | 0.357398 | 1.1:+66840862 | MS.gene005810:intron |
| CGCGTCTTTGATGGCAAAGT+TGG | 0.371068 | 1.1:+66849589 | MS.gene005810:CDS |
| TTCTCCAAGCTCACCATTGT+AGG | 0.374090 | 1.1:-66841219 | None:intergenic |
| ATTTATTCCATCATTGGTAA+TGG | 0.379340 | 1.1:+66840595 | MS.gene005810:CDS |
| CCCAAGGTAATATTGCAAAA+TGG | 0.384478 | 1.1:+66841323 | MS.gene005810:CDS |
| TCCATTTAGCAATGTTTCCT+TGG | 0.387351 | 1.1:-66844216 | None:intergenic |
| CAATGTTAAGTTCAACTTAG+TGG | 0.394633 | 1.1:-66849554 | None:intergenic |
| TCCTCTTCTTTCCCTTAGAA+AGG | 0.394886 | 1.1:+66846227 | MS.gene005810:CDS |
| ATTGCAATCGGTTGTCCAAC+TGG | 0.402399 | 1.1:-66843372 | None:intergenic |
| TAGATTCCCATTACCAATGA+TGG | 0.402968 | 1.1:-66840602 | None:intergenic |
| AAAATGGTCTCACCATTGTT+GGG | 0.405872 | 1.1:-66844120 | None:intergenic |
| CCTTGCAGCATTTCAAACTT+AGG | 0.408249 | 1.1:+66848094 | MS.gene005810:intron |
| CAAAATGTTCCTGCTTCTGT+GGG | 0.414581 | 1.1:+66843962 | MS.gene005810:CDS |
| TGTTTATCAGGCCTGCATCT+TGG | 0.430921 | 1.1:+66840856 | MS.gene005810:intron |
| CTTACACTATGGCAGCATAC+TGG | 0.434085 | 1.1:+66847537 | MS.gene005810:intron |
| CCACACTTATATTTATCATC+AGG | 0.436004 | 1.1:+66846102 | MS.gene005810:CDS |
| TGACTTACTGTTATTGCAAT+CGG | 0.439322 | 1.1:-66843384 | None:intergenic |
| AAAATTAGCAACTTTGCAGC+TGG | 0.442890 | 1.1:-66845358 | None:intergenic |
| TCAAAATGTTCCTGCTTCTG+TGG | 0.447831 | 1.1:+66843961 | MS.gene005810:CDS |
| GGCACAGAACTCCTAATTCA+AGG | 0.453842 | 1.1:+66840572 | MS.gene005810:intron |
| TTCTCTTTGTTTCAGACCCA+AGG | 0.460450 | 1.1:+66841307 | MS.gene005810:intron |
| GCATCAACATTGAATGCAAC+TGG | 0.462945 | 1.1:+66845397 | MS.gene005810:CDS |
| ACCTGCTTCATCTAAAGAAA+AGG | 0.464759 | 1.1:+66845486 | MS.gene005810:CDS |
| CAGGCTTGCATTCTTGCCGT+AGG | 0.467201 | 1.1:+66849391 | MS.gene005810:intron |
| TTTAGATTCCAATAACCTCT+TGG | 0.470034 | 1.1:-66846070 | None:intergenic |
| GAGTACTACGTACCTCGAAA+TGG | 0.470118 | 1.1:-66839440 | None:intergenic |
| CTTCCACCAGATCCATTTCG+AGG | 0.479665 | 1.1:+66839428 | MS.gene005810:CDS |
| TCTCCTCAACTGCGTCATCC+TGG | 0.480636 | 1.1:-66844021 | None:intergenic |
| TGCATTCTTGCCGTAGGGAG+AGG | 0.482989 | 1.1:+66849397 | MS.gene005810:CDS |
| TACTTTGTTGCCTCTCCCTA+CGG | 0.485239 | 1.1:-66849407 | None:intergenic |
| GAATTTGAAAGTCTTGAAGA+AGG | 0.486562 | 1.1:+66841559 | MS.gene005810:CDS |
| ACTGCGTCATCCTGGTGTGC+TGG | 0.491742 | 1.1:-66844013 | None:intergenic |
| GTCTTTGATGGCAAAGTTGG+AGG | 0.493709 | 1.1:+66849592 | MS.gene005810:CDS |
| AAATGTTCCTGCTTCTGTGG+GGG | 0.496201 | 1.1:+66843964 | MS.gene005810:CDS |
| TAAAATTACCTCTGAGGAGA+TGG | 0.500540 | 1.1:-66847790 | None:intergenic |
| GCCATCAAAGACGCGATGAT+CGG | 0.501383 | 1.1:-66849581 | None:intergenic |
| TTCAAGACTTTCAAATTCAA+GGG | 0.507491 | 1.1:-66844453 | None:intergenic |
| CAGCAGCTCAGTAAACCAAA+AGG | 0.507674 | 1.1:+66845267 | MS.gene005810:CDS |
| TTTAATCTTACAGATAGCAG+TGG | 0.509003 | 1.1:+66841495 | MS.gene005810:intron |
| TACGTACCTCGAAATGGATC+TGG | 0.510505 | 1.1:-66839434 | None:intergenic |
| TAACAGACCTTTAAAGTCAA+GGG | 0.511167 | 1.1:+66840899 | MS.gene005810:CDS |
| TTGAAGCCGCAAGAATTTCA+AGG | 0.513994 | 1.1:+66847950 | MS.gene005810:CDS |
| GTAACAGACCTTTAAAGTCA+AGG | 0.515150 | 1.1:+66840898 | MS.gene005810:CDS |
| GGCACATCCTTTGAACCATC+AGG | 0.517874 | 1.1:-66843351 | None:intergenic |
| ACCATTGTTGGGGACAAAGC+AGG | 0.523413 | 1.1:-66844109 | None:intergenic |
| ACCTTTAAGATCCTTTCTAA+GGG | 0.528321 | 1.1:-66846238 | None:intergenic |
| GCATACTGGAATGATGAGAA+AGG | 0.537633 | 1.1:+66847551 | MS.gene005810:intron |
| TGGTGGAAGAAGAGAGGATA+CGG | 0.540241 | 1.1:-66839414 | None:intergenic |
| CATACTGGAATGATGAGAAA+GGG | 0.541352 | 1.1:+66847552 | MS.gene005810:CDS |
| GGTTCAAAAGAAGTGGCTGT+TGG | 0.541517 | 1.1:+66844970 | MS.gene005810:CDS |
| AATGTTCCTGCTTCTGTGGG+GGG | 0.547914 | 1.1:+66843965 | MS.gene005810:CDS |
| AATTTGAAAGTCTTGAAGAA+GGG | 0.551670 | 1.1:+66841560 | MS.gene005810:CDS |
| AGAGAAGAAACCAGCACACC+AGG | 0.551965 | 1.1:+66844003 | MS.gene005810:CDS |
| AAAGAACATCACCTTTCAGT+AGG | 0.552826 | 1.1:-66845432 | None:intergenic |
| TGGATCTGGTGGAAGAAGAG+AGG | 0.553812 | 1.1:-66839420 | None:intergenic |
| CTGGTGCAACTATCTTAGCT+AGG | 0.563129 | 1.1:-66844945 | None:intergenic |
| AGGCTTGCATTCTTGCCGTA+GGG | 0.563888 | 1.1:+66849392 | MS.gene005810:intron |
| GTAAGCCCAGACCAAGATGC+AGG | 0.564967 | 1.1:-66840867 | None:intergenic |
| GAATTTGAAAGTCTTGAAGA+GGG | 0.566919 | 1.1:+66844458 | MS.gene005810:CDS |
| TGAATTTGAAAGTCTTGAAG+AGG | 0.567797 | 1.1:+66844457 | MS.gene005810:CDS |
| ATTGGTACCTGATGGTTCAA+AGG | 0.568103 | 1.1:+66843344 | MS.gene005810:CDS |
| TGAAGCCGCAAGAATTTCAA+GGG | 0.570440 | 1.1:+66847951 | MS.gene005810:CDS |
| TTCAACTTAGTGGCAACAGA+TGG | 0.572073 | 1.1:-66849544 | None:intergenic |
| GGATGGAATGAGAGATGAGA+GGG | 0.572189 | 1.1:-66839393 | None:intergenic |
| AAAATGTTCCTGCTTCTGTG+GGG | 0.574527 | 1.1:+66843963 | MS.gene005810:CDS |
| GAGATAAAGCTGGCATCCCA+AGG | 0.576893 | 1.1:-66841197 | None:intergenic |
| GGAAGAAGAGAGGATACGGA+TGG | 0.582669 | 1.1:-66839410 | None:intergenic |
| ACCAGAAGGTTCAAAAGAAG+TGG | 0.583999 | 1.1:+66844963 | MS.gene005810:CDS |
| GTACCTCGAAATGGATCTGG+TGG | 0.589112 | 1.1:-66839431 | None:intergenic |
| ATTATCTAATAGATTGAAGT+GGG | 0.589807 | 1.1:+66844395 | MS.gene005810:intron |
| GCCAGCTTTATCTCCTACAA+TGG | 0.590978 | 1.1:+66841206 | MS.gene005810:CDS |
| GCTAAGATATTGGTACCTGA+TGG | 0.592832 | 1.1:+66843336 | MS.gene005810:CDS |
| GAAGCAGTAATTGGAGCTGA+TGG | 0.599965 | 1.1:+66849433 | MS.gene005810:CDS |
| AATTATCTAATAGATTGAAG+TGG | 0.600966 | 1.1:+66844394 | MS.gene005810:intron |
| TTGAATGCAACTGGTCCTCA+CGG | 0.601871 | 1.1:+66845406 | MS.gene005810:CDS |
| ACACCAGGATGACGCAGTTG+AGG | 0.602552 | 1.1:+66844018 | MS.gene005810:CDS |
| AAGAACATCACCTTTCAGTA+GGG | 0.605863 | 1.1:-66845431 | None:intergenic |
| CGGATGGAATGAGAGATGAG+AGG | 0.606341 | 1.1:-66839394 | None:intergenic |
| GGCATCCCAAGGACTTCATG+TGG | 0.606738 | 1.1:-66841186 | None:intergenic |
| TCCGAATAGTCAAATTCGCA+AGG | 0.610832 | 1.1:+66845591 | MS.gene005810:CDS |
| CTAGCTGCAAAAGCTCGTGA+AGG | 0.612789 | 1.1:+66847923 | MS.gene005810:CDS |
| AACTGCTATTGATATGTCAA+CGG | 0.613311 | 1.1:-66847594 | None:intergenic |
| AATAGCAGTTGCCACAGAGA+AGG | 0.613496 | 1.1:+66847607 | MS.gene005810:CDS |
| GCTAAGATAGTTGCACCAGA+AGG | 0.613963 | 1.1:+66844949 | MS.gene005810:CDS |
| GAGAGATGAGAGGGTGACGA+AGG | 0.614718 | 1.1:-66839384 | None:intergenic |
| AAGGTAATATTGCAAAATGG+AGG | 0.615748 | 1.1:+66841326 | MS.gene005810:CDS |
| TTAATCTTACAGATAGCAGT+GGG | 0.617105 | 1.1:+66841496 | MS.gene005810:intron |
| ACCATTGTAGGAGATAAAGC+TGG | 0.617916 | 1.1:-66841207 | None:intergenic |
| CCTCACGGCACCCTACTGAA+AGG | 0.619375 | 1.1:+66845421 | MS.gene005810:CDS |
| CCTGATGATAAATATAAGTG+TGG | 0.619611 | 1.1:-66846102 | None:intergenic |
| AAATGGTCTCACCATTGTTG+GGG | 0.628389 | 1.1:-66844119 | None:intergenic |
| TAGCTGCAAAAGCTCGTGAA+GGG | 0.628747 | 1.1:+66847924 | MS.gene005810:CDS |
| AATTTGAAAGTCTTGAAGAG+GGG | 0.634547 | 1.1:+66844459 | MS.gene005810:CDS |
| ATAGCACAGAATTTATCCAC+AGG | 0.635053 | 1.1:-66848124 | None:intergenic |
| AAACTTAGGAATGTATCCTG+TGG | 0.636069 | 1.1:+66848108 | MS.gene005810:CDS |
| GCCTGCTTTGTCCCCAACAA+TGG | 0.637348 | 1.1:+66844108 | MS.gene005810:CDS |
| GGCATTCCAAGAACAATGTG+AGG | 0.645606 | 1.1:-66844088 | None:intergenic |
| ATACTGGAATGATGAGAAAG+GGG | 0.650066 | 1.1:+66847553 | MS.gene005810:CDS |
| GGTTCAAAGGATGTGCCAGT+TGG | 0.650593 | 1.1:+66843357 | MS.gene005810:CDS |
| GAATGTGTCAGATGTTACAC+TGG | 0.651891 | 1.1:+66846203 | MS.gene005810:intron |
| TCCTTTCTAAGGGAAAGAAG+AGG | 0.654298 | 1.1:-66846228 | None:intergenic |
| ATGACATAAAATTACCTCTG+AGG | 0.663836 | 1.1:-66847796 | None:intergenic |
| AATATCTGCCATCTCCTCAG+AGG | 0.672604 | 1.1:+66847782 | MS.gene005810:CDS |
| ATTCCAAGAACAATGTGAGG+TGG | 0.680621 | 1.1:-66844085 | None:intergenic |
| AGCCGCAAGAATTTCAAGGG+GGG | 0.690006 | 1.1:+66847954 | MS.gene005810:CDS |
| GAAGCCGCAAGAATTTCAAG+GGG | 0.691289 | 1.1:+66847952 | MS.gene005810:CDS |
| ACCATCAATTACCTTCTCTG+TGG | 0.706378 | 1.1:-66847618 | None:intergenic |
| CCTTTCAGTAGGGTGCCGTG+AGG | 0.734484 | 1.1:-66845421 | None:intergenic |
| AAGCCGCAAGAATTTCAAGG+GGG | 0.739644 | 1.1:+66847953 | MS.gene005810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 66839370 | 66849613 | 66839370 | ID=MS.gene005810 |
| chr1.1 | mRNA | 66839370 | 66849613 | 66839370 | ID=MS.gene005810.t1;Parent=MS.gene005810 |
| chr1.1 | exon | 66839370 | 66839449 | 66839370 | ID=MS.gene005810.t1.exon1;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66839370 | 66839449 | 66839370 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66840579 | 66840626 | 66840579 | ID=MS.gene005810.t1.exon2;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66840579 | 66840626 | 66840579 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66840866 | 66840920 | 66840866 | ID=MS.gene005810.t1.exon3;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66840866 | 66840920 | 66840866 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66840998 | 66841028 | 66840998 | ID=MS.gene005810.t1.exon4;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66840998 | 66841028 | 66840998 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66841181 | 66841227 | 66841181 | ID=MS.gene005810.t1.exon5;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66841181 | 66841227 | 66841181 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66841322 | 66841366 | 66841322 | ID=MS.gene005810.t1.exon6;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66841322 | 66841366 | 66841322 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66841508 | 66841581 | 66841508 | ID=MS.gene005810.t1.exon7;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66841508 | 66841581 | 66841508 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66843329 | 66843398 | 66843329 | ID=MS.gene005810.t1.exon8;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66843329 | 66843398 | 66843329 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66843941 | 66844129 | 66843941 | ID=MS.gene005810.t1.exon9;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66843941 | 66844129 | 66843941 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66844214 | 66844258 | 66844214 | ID=MS.gene005810.t1.exon10;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66844214 | 66844258 | 66844214 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66844407 | 66844480 | 66844407 | ID=MS.gene005810.t1.exon11;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66844407 | 66844480 | 66844407 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66844942 | 66845011 | 66844942 | ID=MS.gene005810.t1.exon12;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66844942 | 66845011 | 66844942 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66845223 | 66845612 | 66845223 | ID=MS.gene005810.t1.exon13;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66845223 | 66845612 | 66845223 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66846063 | 66846123 | 66846063 | ID=MS.gene005810.t1.exon14;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66846063 | 66846123 | 66846063 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66846214 | 66846258 | 66846214 | ID=MS.gene005810.t1.exon15;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66846214 | 66846258 | 66846214 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66846361 | 66846444 | 66846361 | ID=MS.gene005810.t1.exon16;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66846361 | 66846444 | 66846361 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66847552 | 66847628 | 66847552 | ID=MS.gene005810.t1.exon17;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66847552 | 66847628 | 66847552 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66847741 | 66847803 | 66847741 | ID=MS.gene005810.t1.exon18;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66847741 | 66847803 | 66847741 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66847914 | 66847984 | 66847914 | ID=MS.gene005810.t1.exon19;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66847914 | 66847984 | 66847914 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66848102 | 66848162 | 66848102 | ID=MS.gene005810.t1.exon20;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66848102 | 66848162 | 66848102 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66849394 | 66849454 | 66849394 | ID=MS.gene005810.t1.exon21;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66849394 | 66849454 | 66849394 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| chr1.1 | exon | 66849533 | 66849613 | 66849533 | ID=MS.gene005810.t1.exon22;Parent=MS.gene005810.t1 |
| chr1.1 | CDS | 66849533 | 66849613 | 66849533 | ID=cds.MS.gene005810.t1;Parent=MS.gene005810.t1 |
| Gene Sequence |
| Protein sequence |
