Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005821.t1 | XP_024640583.1 | 98.8 | 917 | 11 | 0 | 1 | 917 | 143 | 1059 | 0.00E+00 | 1773.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005821.t1 | Q9Z160 | 22.0 | 845 | 546 | 22 | 3 | 803 | 140 | 915 | 3.8e-35 | 151.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005821.t1 | A0A396JZ67 | 98.8 | 917 | 11 | 0 | 1 | 917 | 143 | 1059 | 0.0e+00 | 1773.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005821 | MS.gene001540 | PPI |
| MS.gene005821 | MS.gene050696 | PPI |
| MS.gene005821 | MS.gene025857 | PPI |
| MS.gene22747 | MS.gene005821 | PPI |
| MS.gene024389 | MS.gene005821 | PPI |
| MS.gene005821 | MS.gene22749 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005821.t1 | MTR_1g492710 | 98.305 | 649 | 11 | 0 | 1 | 649 | 143 | 791 | 0.0 | 1312 |
| MS.gene005821.t1 | MTR_1g492710 | 95.679 | 162 | 7 | 0 | 641 | 802 | 930 | 1091 | 3.30e-93 | 318 |
| MS.gene005821.t1 | MTR_1g492720 | 100.000 | 59 | 0 | 0 | 803 | 861 | 16 | 74 | 1.25e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005821.t1 | AT5G16300 | 62.206 | 934 | 325 | 11 | 1 | 917 | 146 | 1068 | 0.0 | 1154 |
| MS.gene005821.t1 | AT5G16300 | 60.343 | 933 | 310 | 10 | 1 | 917 | 146 | 1034 | 0.0 | 1107 |
| MS.gene005821.t1 | AT5G16300 | 59.529 | 934 | 319 | 12 | 1 | 917 | 144 | 1035 | 0.0 | 1086 |
| MS.gene005821.t1 | AT5G16300 | 61.092 | 879 | 320 | 10 | 1 | 862 | 146 | 1019 | 0.0 | 1074 |
Find 204 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGGTGTTGGACTTGTTTC+TGG | 0.129159 | 1.4:+72695338 | MS.gene005821:intron |
| CTCTGGTGGTGATTCAAATT+TGG | 0.135515 | 1.4:+72699637 | MS.gene005821:CDS |
| TACTTGGTTCTCCCAGATTT+TGG | 0.137160 | 1.4:+72696492 | MS.gene005821:CDS |
| CAATCATTGACTTGAGATTT+AGG | 0.165545 | 1.4:+72695946 | MS.gene005821:CDS |
| TTGAGGTTTGTTTGTCTTCC+TGG | 0.188667 | 1.4:-72696602 | None:intergenic |
| TCTTGTCTTAATGCCTATTT+TGG | 0.191178 | 1.4:+72696161 | MS.gene005821:CDS |
| TAAACTTGCATCAAGGTTAT+TGG | 0.209158 | 1.4:+72698696 | MS.gene005821:CDS |
| TCTAGGTTGGAAGCAGGTTT+GGG | 0.249144 | 1.4:+72701690 | MS.gene005821:intron |
| TTCTAGGTTGGAAGCAGGTT+TGG | 0.258849 | 1.4:+72701689 | MS.gene005821:intron |
| TGGAAGATGATTCTGATCTT+TGG | 0.258991 | 1.4:+72695883 | MS.gene005821:CDS |
| ACTTACTTCAGGACCAAAAT+AGG | 0.266675 | 1.4:-72696174 | None:intergenic |
| TAACATTTACTTTGCAGATA+TGG | 0.267231 | 1.4:-72696299 | None:intergenic |
| TATTCAATTCTTCCAATTCA+TGG | 0.270315 | 1.4:-72696685 | None:intergenic |
| ATTCCCACTGGCCCAAAATC+TGG | 0.279074 | 1.4:-72696504 | None:intergenic |
| GACTGAAATTCACTTTCTTC+AGG | 0.282420 | 1.4:-72696140 | None:intergenic |
| AAACAAACCTCAACTCTAAA+AGG | 0.284126 | 1.4:+72696612 | MS.gene005821:CDS |
| GTATATGTTTAGAATGGTTT+TGG | 0.284554 | 1.4:-72696463 | None:intergenic |
| GCTCATCAAGTGACAGAAAA+AGG | 0.297837 | 1.4:+72699569 | MS.gene005821:CDS |
| AATCATTGACTTGAGATTTA+GGG | 0.303397 | 1.4:+72695947 | MS.gene005821:CDS |
| CTAGTGAAACATTCTCGTTT+TGG | 0.316077 | 1.4:+72696554 | MS.gene005821:CDS |
| CCTCCAGCTTCACAATTGTT+TGG | 0.317405 | 1.4:+72695546 | MS.gene005821:CDS |
| TAGGATTCGGGAACTCGTTT+TGG | 0.320530 | 1.4:+72695863 | MS.gene005821:CDS |
| CAAAGCTTAACTTCCTCTTC+AGG | 0.325723 | 1.4:-72695582 | None:intergenic |
| GTGCTAGATCCCTCAGTCTT+GGG | 0.327177 | 1.4:-72696277 | None:intergenic |
| CTCTCATTCTCCCAGAGATA+TGG | 0.340747 | 1.4:-72700084 | None:intergenic |
| TCTGTCTTGTGTGATGTGTT+AGG | 0.343702 | 1.4:+72695432 | MS.gene005821:CDS |
| CCTACAACTTATGGATACTA+TGG | 0.344473 | 1.4:+72696735 | MS.gene005821:CDS |
| TCTGCCACAGCAGCGTTGTT+TGG | 0.353173 | 1.4:+72696644 | MS.gene005821:CDS |
| GATGGGGTGAATGTCTTCTT+TGG | 0.353422 | 1.4:-72701162 | None:intergenic |
| CTAAGAGAAGACTTTGCCTT+TGG | 0.354459 | 1.4:-72699680 | None:intergenic |
| CAAACACCGCCTGCTGTATA+AGG | 0.362242 | 1.4:-72696062 | None:intergenic |
| GTATTAGAGCCTACAACTTA+TGG | 0.363762 | 1.4:+72696726 | MS.gene005821:CDS |
| GGAAGATGATTCTGATCTTT+GGG | 0.364524 | 1.4:+72695884 | MS.gene005821:CDS |
| GTCGTGGATATCGCAAGTTT+TGG | 0.367262 | 1.4:+72695371 | MS.gene005821:CDS |
| AGTTGCCTTGGAGTAGGATT+CGG | 0.376951 | 1.4:+72695850 | MS.gene005821:CDS |
| GCCTTAACTTTGAGCACGCC+TGG | 0.378141 | 1.4:+72696809 | MS.gene005821:CDS |
| CTTATACAGCAGGCGGTGTT+TGG | 0.379413 | 1.4:+72696063 | MS.gene005821:CDS |
| TCCCTGATTCGACTTACTTC+AGG | 0.380422 | 1.4:-72696185 | None:intergenic |
| TTAACTTCCTCTTCAGGATT+GGG | 0.381330 | 1.4:-72695576 | None:intergenic |
| CAAGAATGACTTTGTAGAAA+AGG | 0.383535 | 1.4:-72695518 | None:intergenic |
| GTCCTGAAGTAAGTCGAATC+AGG | 0.384077 | 1.4:+72696183 | MS.gene005821:CDS |
| CTTAACTTCCTCTTCAGGAT+TGG | 0.385326 | 1.4:-72695577 | None:intergenic |
| AGAAGATGCAAGCCATGAAT+TGG | 0.386596 | 1.4:+72696673 | MS.gene005821:CDS |
| TGGATGACAGCTCAAGTCTT+GGG | 0.386894 | 1.4:+72701256 | MS.gene005821:CDS |
| CTTCTGCGGAGAAATCAATA+AGG | 0.388903 | 1.4:+72695754 | MS.gene005821:CDS |
| GGGTCATCATCAATCTGATC+TGG | 0.389500 | 1.4:-72701852 | None:intergenic |
| GTATTAGATTCTGAATTAGT+AGG | 0.398427 | 1.4:-72700189 | None:intergenic |
| GTGGTGATTCAAATTTGGTT+GGG | 0.399574 | 1.4:+72699642 | MS.gene005821:CDS |
| CTCAGTCTTGGGGAGGCCTT+CGG | 0.399772 | 1.4:-72696266 | None:intergenic |
| GTTGCCTTGGAGTAGGATTC+GGG | 0.401004 | 1.4:+72695851 | MS.gene005821:CDS |
| AAGAATGACTTTGTAGAAAA+GGG | 0.403222 | 1.4:-72695517 | None:intergenic |
| AAATCTCTTCAAGAAGTTCA+TGG | 0.404740 | 1.4:+72701193 | MS.gene005821:CDS |
| CTGAAGAGGAAGTTAAGCTT+TGG | 0.406834 | 1.4:+72695583 | MS.gene005821:CDS |
| TAAGAGAAGACTTTGCCTTT+GGG | 0.409198 | 1.4:-72699679 | None:intergenic |
| TTTGTCATTGATGTTCTCTC+TGG | 0.410244 | 1.4:+72699620 | MS.gene005821:CDS |
| GGAAAGTAAACAAGTTCTAC+AGG | 0.414373 | 1.4:+72695785 | MS.gene005821:CDS |
| AGATAAGCTGGAATCGGTTA+TGG | 0.414553 | 1.4:+72695617 | MS.gene005821:CDS |
| GCAGCGGCTATGTCCACATT+TGG | 0.416741 | 1.4:+72701779 | MS.gene005821:CDS |
| CTGATTAGACCGTTCTCTAA+TGG | 0.417724 | 1.4:-72699735 | None:intergenic |
| AAGCTCCTGGCCACTGCCAA+TGG | 0.422355 | 1.4:-72695730 | None:intergenic |
| CCATAGTATCCATAAGTTGT+AGG | 0.423408 | 1.4:-72696735 | None:intergenic |
| TCTTTCTCAAAAGATAAATC+TGG | 0.424373 | 1.4:+72701236 | MS.gene005821:CDS |
| GAAGAGATTTCATTTGAAGA+TGG | 0.424725 | 1.4:-72701180 | None:intergenic |
| TGCATCAAGGTTATTGGAAA+AGG | 0.425874 | 1.4:+72698702 | MS.gene005821:CDS |
| GCCTTTCTTTCCACTGAAGT+GGG | 0.425997 | 1.4:+72699542 | MS.gene005821:CDS |
| CATCTGAACATCATTCTGTT+TGG | 0.427866 | 1.4:-72696027 | None:intergenic |
| CCCAGGCGTGCTCAAAGTTA+AGG | 0.428583 | 1.4:-72696810 | None:intergenic |
| ACTGAAATTCACTTTCTTCA+GGG | 0.430090 | 1.4:-72696139 | None:intergenic |
| AAAGGTATGAACCATATCTC+TGG | 0.433620 | 1.4:+72700073 | MS.gene005821:intron |
| GGTGGTGATTCAAATTTGGT+TGG | 0.439017 | 1.4:+72699641 | MS.gene005821:CDS |
| ATCAGACTGATCTTGCTTGA+CGG | 0.443865 | 1.4:-72698545 | None:intergenic |
| GCTTGCTGCTATTGTCTCTC+AGG | 0.444950 | 1.4:+72696769 | MS.gene005821:CDS |
| AAACATATACCCTTGATACT+TGG | 0.448713 | 1.4:+72696476 | MS.gene005821:CDS |
| TCATGGAATTCAATTACAAA+TGG | 0.449641 | 1.4:+72701210 | MS.gene005821:CDS |
| CCAGCTTCACAATTGTTTGG+CGG | 0.452392 | 1.4:+72695549 | MS.gene005821:CDS |
| GAAGAATTGAATAAGACTAT+AGG | 0.452669 | 1.4:+72696695 | MS.gene005821:CDS |
| TTTGGATTCTGATGAGGGTA+AGG | 0.452923 | 1.4:+72694519 | MS.gene005821:CDS |
| CAGCTTCACAATTGTTTGGC+GGG | 0.453635 | 1.4:+72695550 | MS.gene005821:CDS |
| AAGAGATTTCATTTGAAGAT+GGG | 0.456289 | 1.4:-72701179 | None:intergenic |
| GTCATTGATGTTCTCTCTGG+TGG | 0.462199 | 1.4:+72699623 | MS.gene005821:CDS |
| TGGCTGAGATTGTCAAACTT+TGG | 0.462256 | 1.4:-72699715 | None:intergenic |
| TCAAGGGTATATGTTTAGAA+TGG | 0.463200 | 1.4:-72696469 | None:intergenic |
| GGTTTAAATACCTCCCCATC+AGG | 0.463246 | 1.4:+72700235 | MS.gene005821:CDS |
| TGAGGGTAAGGTTAAGATCT+TGG | 0.463258 | 1.4:+72694531 | MS.gene005821:CDS |
| CTGGATGACAGCTCAAGTCT+TGG | 0.465347 | 1.4:+72701255 | MS.gene005821:CDS |
| GGCCTTTCTTTCCACTGAAG+TGG | 0.465406 | 1.4:+72699541 | MS.gene005821:CDS |
| TGGAGATATTCTACCTGCTC+AGG | 0.465773 | 1.4:+72701799 | MS.gene005821:CDS |
| TCAGGTCACTCTGGGTCAGG+TGG | 0.469957 | 1.4:+72695461 | MS.gene005821:CDS |
| GATCTGAGATTGAGTTGCCT+TGG | 0.470997 | 1.4:+72695838 | MS.gene005821:CDS |
| GGTCTAATCAGTTGTTAAAC+CGG | 0.471854 | 1.4:+72699747 | MS.gene005821:CDS |
| AGAAATTTAATTGATGCCAT+TGG | 0.473388 | 1.4:+72695714 | MS.gene005821:CDS |
| AAACCGGCTTTCTCAGAGAC+TGG | 0.473732 | 1.4:+72699763 | MS.gene005821:CDS |
| TCAGATCTCGCAGCGGAGTC+GGG | 0.474276 | 1.4:+72694606 | MS.gene005821:CDS |
| TGATGGGGAGGTATTTAAAC+CGG | 0.475659 | 1.4:-72700233 | None:intergenic |
| AGGAGACCAGCTGCCTGAGC+AGG | 0.476959 | 1.4:-72701812 | None:intergenic |
| ACTTACGTAAGCCAGTCTAT+AGG | 0.479011 | 1.4:-72699788 | None:intergenic |
| AACACAATTTCTGCAGTAGT+TGG | 0.479333 | 1.4:+72695996 | MS.gene005821:CDS |
| ATTCTACCTGCTCAGGCAGC+TGG | 0.479804 | 1.4:+72701806 | MS.gene005821:CDS |
| GTCTTCTCTTAGAAGAAAGC+AGG | 0.480005 | 1.4:+72699691 | MS.gene005821:CDS |
| CATTCAGGTCACTCTGGGTC+AGG | 0.483438 | 1.4:+72695458 | MS.gene005821:CDS |
| CCGCCAAACAATTGTGAAGC+TGG | 0.485468 | 1.4:-72695549 | None:intergenic |
| ACAGGTAGTTGGAATCTTTG+AGG | 0.485788 | 1.4:+72699520 | MS.gene005821:intron |
| TGATGTGTTAGGAATCATTC+AGG | 0.486504 | 1.4:+72695443 | MS.gene005821:CDS |
| TTAATTGATGCCATTGGCAG+TGG | 0.486951 | 1.4:+72695720 | MS.gene005821:CDS |
| TTCCCACTGGCCCAAAATCT+GGG | 0.488521 | 1.4:-72696503 | None:intergenic |
| ACAAACAACATTACCTTCTC+CGG | 0.489314 | 1.4:-72694709 | None:intergenic |
| TGGCCAGGAGCTTGCTTCTG+CGG | 0.493090 | 1.4:+72695740 | MS.gene005821:CDS |
| TCTGGGAGAACCAAGTATCA+AGG | 0.496917 | 1.4:-72696486 | None:intergenic |
| AGGAATCATTCAGGTCACTC+TGG | 0.498232 | 1.4:+72695452 | MS.gene005821:CDS |
| GGTGCTAGATCCCTCAGTCT+TGG | 0.500985 | 1.4:-72696278 | None:intergenic |
| TGATGCCATTGGCAGTGGCC+AGG | 0.505848 | 1.4:+72695725 | MS.gene005821:CDS |
| CGAGAATGTTTCACTAGAGA+TGG | 0.508905 | 1.4:-72696548 | None:intergenic |
| TTCCTCTTCTTCAGCATCAG+TGG | 0.509680 | 1.4:+72694560 | MS.gene005821:CDS |
| TCTCCGCAGAAGCAAGCTCC+TGG | 0.510429 | 1.4:-72695743 | None:intergenic |
| CTCAGATCTCGCAGCGGAGT+CGG | 0.511516 | 1.4:+72694605 | MS.gene005821:CDS |
| TGGTGATTCAAATTTGGTTG+GGG | 0.513230 | 1.4:+72699643 | MS.gene005821:CDS |
| ACCGCCTGCTGTATAAGGTC+TGG | 0.515915 | 1.4:-72696057 | None:intergenic |
| ACCCACTTCAGTGGAAAGAA+AGG | 0.517882 | 1.4:-72699543 | None:intergenic |
| TTCTACAGGGGAGTCTAGAA+TGG | 0.519002 | 1.4:+72695799 | MS.gene005821:CDS |
| CGATGAATTTCAGCCGGAGA+AGG | 0.522546 | 1.4:+72694696 | MS.gene005821:CDS |
| TGCCACTGATGCTGAAGAAG+AGG | 0.523386 | 1.4:-72694562 | None:intergenic |
| TGAGGTGTTCTACAGTTCCC+CGG | 0.527851 | 1.4:+72700214 | MS.gene005821:CDS |
| GAAGAAGTTCATCGAGTTGG+AGG | 0.528343 | 1.4:+72698646 | MS.gene005821:CDS |
| GGCCCTCTAGAGGACAATGC+TGG | 0.528993 | 1.4:-72701141 | None:intergenic |
| TGCTAGATCCCTCAGTCTTG+GGG | 0.531562 | 1.4:-72696276 | None:intergenic |
| AGATTGAGTTGCCTTGGAGT+AGG | 0.532804 | 1.4:+72695844 | MS.gene005821:CDS |
| CAATATCAAACTGACCTGAT+GGG | 0.532941 | 1.4:-72700249 | None:intergenic |
| AGTGGGAATGCATCTACAGT+TGG | 0.533871 | 1.4:+72696518 | MS.gene005821:CDS |
| ATGCTAACTGATGGGCAAGT+TGG | 0.535035 | 1.4:+72701737 | MS.gene005821:CDS |
| GTGGGAATGCATCTACAGTT+GGG | 0.536592 | 1.4:+72696519 | MS.gene005821:CDS |
| GAATGTGTAAATAAGATAAG+TGG | 0.536688 | 1.4:+72695690 | MS.gene005821:CDS |
| CTTTGGGATGAGATATTTGA+GGG | 0.538918 | 1.4:+72695900 | MS.gene005821:CDS |
| TGTGAAGAAGTTCATCGAGT+TGG | 0.544251 | 1.4:+72698643 | MS.gene005821:CDS |
| AACTTTGAGCACGCCTGGGA+GGG | 0.546184 | 1.4:+72696814 | MS.gene005821:CDS |
| AGAGATTTCATTTGAAGATG+GGG | 0.546216 | 1.4:-72701178 | None:intergenic |
| GGAATCATTCAGGTCACTCT+GGG | 0.546727 | 1.4:+72695453 | MS.gene005821:CDS |
| CCTTAACTTTGAGCACGCCT+GGG | 0.547017 | 1.4:+72696810 | MS.gene005821:CDS |
| TCTTTGGGATGAGATATTTG+AGG | 0.548135 | 1.4:+72695899 | MS.gene005821:CDS |
| CTGGGATCAATGCTAACTGA+TGG | 0.549686 | 1.4:+72701728 | MS.gene005821:CDS |
| TTCTGCGGAGAAATCAATAA+GGG | 0.550295 | 1.4:+72695755 | MS.gene005821:CDS |
| TTCTGGAATCGAGGAAGTCG+TGG | 0.555193 | 1.4:+72695355 | MS.gene005821:CDS |
| AACTGTAGATGCATTCCCAC+TGG | 0.555315 | 1.4:-72696516 | None:intergenic |
| TTTCTTTCCACTGAAGTGGG+TGG | 0.557146 | 1.4:+72699545 | MS.gene005821:CDS |
| CAGGTCACTCTGGGTCAGGT+GGG | 0.557190 | 1.4:+72695462 | MS.gene005821:CDS |
| GCTCCAGCATTGTCCTCTAG+AGG | 0.560921 | 1.4:+72701138 | MS.gene005821:CDS |
| GAAATCAATAAGGGAGACAA+TGG | 0.561377 | 1.4:+72695764 | MS.gene005821:CDS |
| AATGAGATTATATATAGAGA+AGG | 0.563945 | 1.4:-72698607 | None:intergenic |
| TGTTATCGATGAATTTCAGC+CGG | 0.567099 | 1.4:+72694690 | MS.gene005821:CDS |
| AAGGTATGAACCATATCTCT+GGG | 0.568167 | 1.4:+72700074 | MS.gene005821:intron |
| GGTCATCATCAATCTGATCT+GGG | 0.568388 | 1.4:-72701851 | None:intergenic |
| TCTGCTATCTGTGATAGTCC+AGG | 0.568587 | 1.4:+72696584 | MS.gene005821:CDS |
| AAAATGTCACTTACCCTCCC+AGG | 0.568735 | 1.4:-72696827 | None:intergenic |
| TCAGTCTGATGAGAACCAAT+CGG | 0.570120 | 1.4:+72698558 | MS.gene005821:CDS |
| TGTCTTCTTTGGCCCTCTAG+AGG | 0.571932 | 1.4:-72701151 | None:intergenic |
| ATGAGCACCACCCACTTCAG+TGG | 0.574773 | 1.4:-72699552 | None:intergenic |
| CGGGATCGTTTGCTTGATCG+TGG | 0.576724 | 1.4:+72694625 | MS.gene005821:CDS |
| CTGGGAGAACCAAGTATCAA+GGG | 0.578029 | 1.4:-72696485 | None:intergenic |
| GTTAACCAGCACGGTTGATG+TGG | 0.588280 | 1.4:+72695971 | MS.gene005821:CDS |
| TTGACCAGACCTTATACAGC+AGG | 0.590278 | 1.4:+72696053 | MS.gene005821:CDS |
| TGATAGTTTATATGTCTCGA+TGG | 0.592465 | 1.4:+72696364 | MS.gene005821:CDS |
| GTTCACCACATCAACCGTGC+TGG | 0.593350 | 1.4:-72695976 | None:intergenic |
| CGAAGGCCTCCCCAAGACTG+AGG | 0.594602 | 1.4:+72696267 | MS.gene005821:CDS |
| AGAGACTGGATCCTATAGAC+TGG | 0.594900 | 1.4:+72699777 | MS.gene005821:CDS |
| TGGGATCAATGCTAACTGAT+GGG | 0.595228 | 1.4:+72701729 | MS.gene005821:CDS |
| TGCTCCAAACAACGCTGCTG+TGG | 0.597489 | 1.4:-72696648 | None:intergenic |
| GGATGACAGCTCAAGTCTTG+GGG | 0.597612 | 1.4:+72701257 | MS.gene005821:CDS |
| TTATATGTCTCGATGGAAAG+TGG | 0.599105 | 1.4:+72696371 | MS.gene005821:CDS |
| ATATATAGAGAAGGCATAGA+CGG | 0.599927 | 1.4:-72698598 | None:intergenic |
| CGGGATTCCCAATCCTGAAG+AGG | 0.601860 | 1.4:+72695569 | MS.gene005821:CDS |
| GAAGGCCTCCCCAAGACTGA+GGG | 0.602042 | 1.4:+72696268 | MS.gene005821:CDS |
| TCTTCTCTTAGAAGAAAGCA+GGG | 0.604861 | 1.4:+72699692 | MS.gene005821:CDS |
| GATCCAGTCTCTGAGAAAGC+CGG | 0.605086 | 1.4:-72699766 | None:intergenic |
| CATATCTCTGGGAGAATGAG+AGG | 0.605460 | 1.4:+72700085 | MS.gene005821:CDS |
| GTTTACTGAACAGGGATGGG+AGG | 0.606685 | 1.4:+72698516 | MS.gene005821:intron |
| TAACTTTGAGCACGCCTGGG+AGG | 0.607220 | 1.4:+72696813 | MS.gene005821:CDS |
| CTCCAGCATTGTCCTCTAGA+GGG | 0.608602 | 1.4:+72701139 | MS.gene005821:CDS |
| TCCTGAAGTAAGTCGAATCA+GGG | 0.610907 | 1.4:+72696184 | MS.gene005821:CDS |
| AAGTTTCTTAGAATCTCCGA+AGG | 0.612765 | 1.4:+72696250 | MS.gene005821:CDS |
| AATATCAAACTGACCTGATG+GGG | 0.614646 | 1.4:-72700248 | None:intergenic |
| CACAAAAGAAGAATCGTCAC+CGG | 0.618519 | 1.4:-72695406 | None:intergenic |
| CTAGGTTGGAAGCAGGTTTG+GGG | 0.621040 | 1.4:+72701691 | MS.gene005821:intron |
| GATGGGGAGGTATTTAAACC+GGG | 0.621555 | 1.4:-72700232 | None:intergenic |
| ATCAAACTGACCTGATGGGG+AGG | 0.624136 | 1.4:-72700245 | None:intergenic |
| TGGACTTGTTTCTGGAATCG+AGG | 0.625618 | 1.4:+72695346 | MS.gene005821:CDS |
| TAGATCCCTCAGTCTTGGGG+AGG | 0.625641 | 1.4:-72696273 | None:intergenic |
| AGAATGACTTTGTAGAAAAG+GGG | 0.628281 | 1.4:-72695516 | None:intergenic |
| TTCTTGTCAGAGCATCCTTG+AGG | 0.630385 | 1.4:+72696220 | MS.gene005821:CDS |
| GGAATTATCTAGTAACCCAA+AGG | 0.632091 | 1.4:+72699664 | MS.gene005821:CDS |
| TGGGAGCAGTAAAAGATGAG+AGG | 0.632209 | 1.4:-72701832 | None:intergenic |
| GAAATTCACTTTCTTCAGGG+TGG | 0.634719 | 1.4:-72696136 | None:intergenic |
| GAAAGTAAACAAGTTCTACA+GGG | 0.640980 | 1.4:+72695786 | MS.gene005821:CDS |
| TGACAGCTCAAGTCTTGGGG+TGG | 0.641795 | 1.4:+72701260 | MS.gene005821:CDS |
| ATTTAGGGAGTTAACCAGCA+CGG | 0.645100 | 1.4:+72695962 | MS.gene005821:CDS |
| AGAAACTTAACAGATCCTCA+AGG | 0.648118 | 1.4:-72696235 | None:intergenic |
| AGGTAGAATATCTCCAAATG+TGG | 0.648626 | 1.4:-72701792 | None:intergenic |
| CAATCTCAGCCATTAGAGAA+CGG | 0.648660 | 1.4:+72699726 | MS.gene005821:CDS |
| GATGGAAAGTGGTGACAAAG+AGG | 0.649981 | 1.4:+72696382 | MS.gene005821:CDS |
| AGTTCCCGAATCCTACTCCA+AGG | 0.652818 | 1.4:-72695855 | None:intergenic |
| CCAAACAATTGTGAAGCTGG+AGG | 0.661046 | 1.4:-72695546 | None:intergenic |
| ACCAGACCTTATACAGCAGG+CGG | 0.668431 | 1.4:+72696056 | MS.gene005821:CDS |
| ATTCAGAATCTAATACTCTG+AGG | 0.683698 | 1.4:+72700196 | MS.gene005821:CDS |
| TTAGAGCTCAGATCTCGCAG+CGG | 0.695588 | 1.4:+72694599 | MS.gene005821:CDS |
| AAAGTAAACAAGTTCTACAG+GGG | 0.712947 | 1.4:+72695787 | MS.gene005821:CDS |
| ATGGGGAGGTATTTAAACCG+GGG | 0.735896 | 1.4:-72700231 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 72694460 | 72701865 | 72694460 | ID=MS.gene005821 |
| chr1.4 | mRNA | 72694460 | 72701865 | 72694460 | ID=MS.gene005821.t1;Parent=MS.gene005821 |
| chr1.4 | exon | 72694460 | 72694717 | 72694460 | ID=MS.gene005821.t1.exon1;Parent=MS.gene005821.t1 |
| chr1.4 | CDS | 72694460 | 72694717 | 72694460 | ID=cds.MS.gene005821.t1;Parent=MS.gene005821.t1 |
| chr1.4 | exon | 72695342 | 72696835 | 72695342 | ID=MS.gene005821.t1.exon2;Parent=MS.gene005821.t1 |
| chr1.4 | CDS | 72695342 | 72696835 | 72695342 | ID=cds.MS.gene005821.t1;Parent=MS.gene005821.t1 |
| chr1.4 | exon | 72698529 | 72698723 | 72698529 | ID=MS.gene005821.t1.exon3;Parent=MS.gene005821.t1 |
| chr1.4 | CDS | 72698529 | 72698723 | 72698529 | ID=cds.MS.gene005821.t1;Parent=MS.gene005821.t1 |
| chr1.4 | exon | 72699524 | 72699804 | 72699524 | ID=MS.gene005821.t1.exon4;Parent=MS.gene005821.t1 |
| chr1.4 | CDS | 72699524 | 72699804 | 72699524 | ID=cds.MS.gene005821.t1;Parent=MS.gene005821.t1 |
| chr1.4 | exon | 72700077 | 72700256 | 72700077 | ID=MS.gene005821.t1.exon5;Parent=MS.gene005821.t1 |
| chr1.4 | CDS | 72700077 | 72700256 | 72700077 | ID=cds.MS.gene005821.t1;Parent=MS.gene005821.t1 |
| chr1.4 | exon | 72701137 | 72701311 | 72701137 | ID=MS.gene005821.t1.exon6;Parent=MS.gene005821.t1 |
| chr1.4 | CDS | 72701137 | 72701311 | 72701137 | ID=cds.MS.gene005821.t1;Parent=MS.gene005821.t1 |
| chr1.4 | exon | 72701695 | 72701865 | 72701695 | ID=MS.gene005821.t1.exon7;Parent=MS.gene005821.t1 |
| chr1.4 | CDS | 72701695 | 72701865 | 72701695 | ID=cds.MS.gene005821.t1;Parent=MS.gene005821.t1 |
| Gene Sequence |
| Protein sequence |
