Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005956.t1 | RHN81479.1 | 99.1 | 544 | 5 | 0 | 1 | 544 | 1 | 544 | 0.00E+00 | 1075.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005956.t1 | Q7XA06 | 64.0 | 544 | 186 | 3 | 1 | 541 | 1 | 537 | 3.0e-205 | 716.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005956.t1 | A0A396JT26 | 99.1 | 544 | 5 | 0 | 1 | 544 | 1 | 544 | 0.0e+00 | 1075.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene005956 | MS.gene85428 | PPI |
MS.gene005956 | MS.gene023945 | PPI |
MS.gene005956 | MS.gene75993 | PPI |
MS.gene005956 | MS.gene44760 | PPI |
MS.gene005956 | MS.gene85425 | PPI |
MS.gene058512 | MS.gene005956 | PPI |
MS.gene005956 | MS.gene89310 | PPI |
MS.gene62006 | MS.gene005956 | PPI |
MS.gene005956 | MS.gene022022 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005956.t1 | MTR_1g094810 | 96.507 | 544 | 4 | 1 | 1 | 544 | 1 | 529 | 0.0 | 1060 |
MS.gene005956.t1 | MTR_4g073400 | 55.577 | 529 | 226 | 3 | 17 | 544 | 17 | 537 | 0.0 | 611 |
MS.gene005956.t1 | MTR_1g025550 | 53.211 | 545 | 242 | 4 | 1 | 543 | 1 | 534 | 0.0 | 596 |
MS.gene005956.t1 | MTR_4g115660 | 30.309 | 518 | 321 | 14 | 53 | 541 | 51 | 557 | 1.78e-73 | 244 |
MS.gene005956.t1 | MTR_7g075790 | 32.278 | 474 | 286 | 14 | 3 | 453 | 4 | 465 | 1.54e-66 | 224 |
MS.gene005956.t1 | MTR_3g106660 | 26.571 | 557 | 356 | 17 | 21 | 541 | 17 | 556 | 3.20e-62 | 214 |
MS.gene005956.t1 | MTR_8g035590 | 31.920 | 401 | 251 | 11 | 11 | 395 | 1 | 395 | 9.95e-58 | 201 |
MS.gene005956.t1 | MTR_4g073510 | 44.776 | 134 | 61 | 3 | 327 | 459 | 193 | 314 | 2.15e-22 | 100 |
MS.gene005956.t1 | MTR_7g080570 | 41.803 | 122 | 67 | 4 | 422 | 540 | 43 | 163 | 1.99e-20 | 89.0 |
MS.gene005956.t1 | MTR_2g072180 | 23.288 | 292 | 195 | 10 | 67 | 335 | 72 | 357 | 3.77e-14 | 75.9 |
MS.gene005956.t1 | MTR_8g032320 | 31.410 | 156 | 97 | 3 | 259 | 414 | 2 | 147 | 1.31e-13 | 68.9 |
MS.gene005956.t1 | MTR_8g032300 | 30.573 | 157 | 97 | 4 | 259 | 414 | 2 | 147 | 4.48e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005956.t1 | AT5G04220 | 64.954 | 545 | 179 | 4 | 1 | 541 | 1 | 537 | 0.0 | 703 |
MS.gene005956.t1 | AT5G04220 | 66.667 | 483 | 149 | 4 | 63 | 541 | 1 | 475 | 0.0 | 651 |
MS.gene005956.t1 | AT2G20990 | 53.102 | 548 | 245 | 5 | 1 | 544 | 1 | 540 | 0.0 | 609 |
MS.gene005956.t1 | AT1G20080 | 51.565 | 543 | 253 | 4 | 1 | 542 | 1 | 534 | 0.0 | 597 |
MS.gene005956.t1 | AT1G20080 | 51.565 | 543 | 253 | 4 | 1 | 542 | 1 | 534 | 0.0 | 597 |
MS.gene005956.t1 | AT1G20080 | 51.565 | 543 | 253 | 4 | 1 | 542 | 1 | 534 | 0.0 | 597 |
MS.gene005956.t1 | AT1G20080 | 51.565 | 543 | 253 | 4 | 1 | 542 | 1 | 534 | 0.0 | 597 |
MS.gene005956.t1 | AT1G20080 | 51.565 | 543 | 253 | 4 | 1 | 542 | 1 | 534 | 0.0 | 597 |
MS.gene005956.t1 | AT2G20990 | 50.874 | 572 | 245 | 6 | 1 | 544 | 1 | 564 | 0.0 | 595 |
MS.gene005956.t1 | AT2G20990 | 49.659 | 586 | 245 | 6 | 1 | 544 | 1 | 578 | 0.0 | 591 |
MS.gene005956.t1 | AT5G04220 | 65.109 | 321 | 100 | 4 | 225 | 541 | 3 | 315 | 4.87e-140 | 407 |
MS.gene005956.t1 | AT1G05500 | 29.401 | 568 | 347 | 16 | 11 | 541 | 1 | 551 | 2.11e-77 | 254 |
MS.gene005956.t1 | AT2G21010 | 45.725 | 269 | 129 | 5 | 279 | 544 | 1 | 255 | 3.80e-77 | 244 |
MS.gene005956.t1 | AT3G61050 | 33.005 | 406 | 249 | 12 | 1 | 395 | 1 | 394 | 8.04e-59 | 204 |
MS.gene005956.t1 | AT3G61050 | 33.005 | 406 | 249 | 12 | 1 | 395 | 1 | 394 | 8.04e-59 | 204 |
MS.gene005956.t1 | AT1G05500 | 31.678 | 423 | 246 | 12 | 146 | 541 | 1 | 407 | 4.85e-56 | 194 |
MS.gene005956.t1 | AT3G60950 | 27.961 | 304 | 160 | 10 | 71 | 367 | 39 | 290 | 1.69e-24 | 108 |
MS.gene005956.t1 | AT3G61030 | 27.632 | 304 | 154 | 9 | 71 | 367 | 39 | 283 | 5.99e-23 | 102 |
MS.gene005956.t1 | AT2G21040 | 50.649 | 77 | 37 | 1 | 425 | 500 | 15 | 91 | 1.54e-20 | 92.0 |
MS.gene005956.t1 | AT1G50260 | 26.452 | 310 | 200 | 11 | 69 | 354 | 190 | 495 | 5.82e-15 | 78.6 |
MS.gene005956.t1 | AT1G53590 | 24.149 | 323 | 214 | 10 | 67 | 365 | 68 | 383 | 3.94e-12 | 69.7 |
MS.gene005956.t1 | AT1G70810 | 36.957 | 92 | 53 | 3 | 260 | 351 | 5 | 91 | 6.47e-11 | 61.6 |
MS.gene005956.t1 | AT5G47710 | 38.542 | 96 | 54 | 3 | 258 | 353 | 3 | 93 | 6.80e-11 | 61.6 |
MS.gene005956.t1 | AT5G47710 | 38.542 | 96 | 54 | 3 | 258 | 353 | 3 | 93 | 6.80e-11 | 61.6 |
MS.gene005956.t1 | AT5G47710 | 38.542 | 96 | 54 | 3 | 258 | 353 | 3 | 93 | 6.80e-11 | 61.6 |
MS.gene005956.t1 | AT5G47710 | 38.542 | 96 | 54 | 3 | 258 | 353 | 3 | 93 | 6.80e-11 | 61.6 |
MS.gene005956.t1 | AT1G70800 | 37.624 | 101 | 58 | 4 | 251 | 351 | 5 | 100 | 7.10e-11 | 61.6 |
MS.gene005956.t1 | AT1G70790 | 41.379 | 87 | 46 | 3 | 258 | 344 | 4 | 85 | 8.02e-11 | 61.6 |
MS.gene005956.t1 | AT1G70790 | 41.379 | 87 | 46 | 3 | 258 | 344 | 4 | 85 | 8.02e-11 | 61.6 |
MS.gene005956.t1 | AT1G70790 | 41.379 | 87 | 46 | 3 | 258 | 344 | 4 | 85 | 8.02e-11 | 61.6 |
Find 142 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAACAGCCTCATGTGGATTT+TGG | 0.116996 | 1.3:+65999070 | MS.gene005956:intron |
TGCCCTCTAAACTTCTTATT+TGG | 0.168636 | 1.3:-66000884 | None:intergenic |
ATTCCTCTTGGTCTTCTTCT+TGG | 0.184387 | 1.3:+65997386 | MS.gene005956:CDS |
CCCAATCATAGACTTGTAAT+TGG | 0.238477 | 1.3:-66000146 | None:intergenic |
AGGCAATTTGTGGGATAATT+AGG | 0.254471 | 1.3:+65997947 | MS.gene005956:intron |
GTTAGACCAATTAGTGAATT+AGG | 0.267667 | 1.3:+65997632 | MS.gene005956:CDS |
ATTTGATATGTGGCCTTTCT+TGG | 0.280149 | 1.3:+65997841 | MS.gene005956:CDS |
TTCTGCAGGTATGAAAGTTT+TGG | 0.282874 | 1.3:+65998656 | MS.gene005956:intron |
AAAGCAAACCCGCTCCTTCT+TGG | 0.286531 | 1.3:-66001024 | None:intergenic |
TGCAAGGTCAATACTATGTT+TGG | 0.291324 | 1.3:-65998732 | None:intergenic |
TTTGCAGTGATCACCTTTAG+AGG | 0.302647 | 1.3:+66001097 | MS.gene005956:CDS |
TAATTCATGTTGAGATAAAA+TGG | 0.314770 | 1.3:+66001957 | MS.gene005956:CDS |
TCCAATTACAAGTCTATGAT+TGG | 0.315176 | 1.3:+66000145 | MS.gene005956:CDS |
GGGGTTCTTTGAAAGTTTCT+TGG | 0.325108 | 1.3:+65997340 | MS.gene005956:CDS |
CATTCCTTGAATTTATTAGA+TGG | 0.332392 | 1.3:-66001931 | None:intergenic |
AGTGGGCCTAATTCACTAAT+TGG | 0.335206 | 1.3:-65997638 | None:intergenic |
TTATCTTTGGCCTCAGATCT+TGG | 0.336761 | 1.3:+65999458 | MS.gene005956:CDS |
CCAATGTATTCATCAAATAT+CGG | 0.340064 | 1.3:-65997982 | None:intergenic |
TTCACCCAGAGAGGAATTTC+AGG | 0.340892 | 1.3:-65997680 | None:intergenic |
GGAAACAAATGAAAAGGAAT+TGG | 0.343840 | 1.3:+65998677 | MS.gene005956:CDS |
AAGTTGCAAACCTTTATCTT+TGG | 0.347676 | 1.3:+65999445 | MS.gene005956:CDS |
TACGGCTTAAGCAGCTTTAG+AGG | 0.354225 | 1.3:-66000806 | None:intergenic |
ACGTTGATTCATCAAGAATA+GGG | 0.369250 | 1.3:-65999485 | None:intergenic |
TGGTCTTTATAGATTTGTTC+AGG | 0.370982 | 1.3:+65999129 | MS.gene005956:CDS |
CAAATTCCTCCTCTTGATAG+TGG | 0.371588 | 1.3:-66000064 | None:intergenic |
ACGGATAAGTTTAAGACCTT+TGG | 0.374525 | 1.3:+65998896 | MS.gene005956:CDS |
TATTACATGTGAATGTGGTT+AGG | 0.379262 | 1.3:+65999950 | MS.gene005956:CDS |
AAACTAACTCTTTCATAATC+AGG | 0.381483 | 1.3:-65997707 | None:intergenic |
AGATCTGAGGCCAAAGATAA+AGG | 0.387195 | 1.3:-65999455 | None:intergenic |
GGGTTCTTTGAAAGTTTCTT+GGG | 0.389257 | 1.3:+65997341 | MS.gene005956:CDS |
GATCTACTTACCACAAATAG+TGG | 0.393353 | 1.3:-65998061 | None:intergenic |
TACGTTGATTCATCAAGAAT+AGG | 0.403364 | 1.3:-65999486 | None:intergenic |
ATTTACACTTGATTTGCTTA+AGG | 0.404829 | 1.3:+66000841 | MS.gene005956:CDS |
TTTGCTATTGGAATTCCTCT+TGG | 0.405196 | 1.3:+65997374 | MS.gene005956:CDS |
GAGGCTCCTCTAGCATAAAC+TGG | 0.415645 | 1.3:-66001388 | None:intergenic |
TATGTCAAACTGAGCCTGAC+TGG | 0.419431 | 1.3:+66000018 | MS.gene005956:CDS |
ACTCCAAATAAGAAGTTTAG+AGG | 0.424971 | 1.3:+66000881 | MS.gene005956:CDS |
GCATGTTTCATCAGGTTGAT+TGG | 0.427787 | 1.3:+65997804 | MS.gene005956:intron |
TCATGGAACAAGTCATCAAA+TGG | 0.428179 | 1.3:+65998700 | MS.gene005956:CDS |
TTTGCTTTCAGTTGTGGTAC+AGG | 0.430496 | 1.3:+66001039 | MS.gene005956:CDS |
AAAGGTTGTGGTGTCTTTGA+TGG | 0.436285 | 1.3:+65998941 | MS.gene005956:CDS |
GCAAGGTCAATACTATGTTT+GGG | 0.443699 | 1.3:-65998731 | None:intergenic |
TTCATACTATCTTCTCTGAA+TGG | 0.445049 | 1.3:-66000932 | None:intergenic |
TTATGCCTGAAATTCCTCTC+TGG | 0.446224 | 1.3:+65997675 | MS.gene005956:CDS |
ACTCTTCCTCCCACTATTTG+TGG | 0.446962 | 1.3:+65998051 | MS.gene005956:CDS |
TCACTAATTGGTCTAACAAC+AGG | 0.448248 | 1.3:-65997626 | None:intergenic |
TAACAAAATGCAGGAATCCC+TGG | 0.449558 | 1.3:+66001850 | MS.gene005956:intron |
GTAAATTCTTTATTCTCATA+CGG | 0.450526 | 1.3:-66000824 | None:intergenic |
GTCAGGCTCAGTTTGACATA+TGG | 0.457579 | 1.3:-66000015 | None:intergenic |
TTCATTCCAACGTGGTTGAC+GGG | 0.462970 | 1.3:-66001360 | None:intergenic |
CTGGAAGTTTGTCCCCAGTC+AGG | 0.464687 | 1.3:-66000032 | None:intergenic |
AGAGAAGATAGTATGAAATT+CGG | 0.467927 | 1.3:+66000938 | MS.gene005956:CDS |
CTTCATTCCAACGTGGTTGA+CGG | 0.468702 | 1.3:-66001361 | None:intergenic |
AACAAAATGCAGGAATCCCT+GGG | 0.473300 | 1.3:+66001851 | MS.gene005956:intron |
AGCGGGTTTGCTTTCAGTTG+TGG | 0.476841 | 1.3:+66001033 | MS.gene005956:CDS |
AGTACCATCTAATAAATTCA+AGG | 0.478035 | 1.3:+66001927 | MS.gene005956:CDS |
ATTACATGTGAATGTGGTTA+GGG | 0.483908 | 1.3:+65999951 | MS.gene005956:CDS |
CCAATTACAAGTCTATGATT+GGG | 0.487047 | 1.3:+66000146 | MS.gene005956:CDS |
GGATATGTCAGAAAGGATAG+TGG | 0.491916 | 1.3:+66000974 | MS.gene005956:CDS |
CCGATATTTGATGAATACAT+TGG | 0.492052 | 1.3:+65997982 | MS.gene005956:CDS |
AATTGGAGAACTTGAGATTG+AGG | 0.492351 | 1.3:-66000129 | None:intergenic |
TTGAATTTCTCATTCCATTG+AGG | 0.492601 | 1.3:-66000090 | None:intergenic |
CCTTTAGAGGCGAAAAGAAA+AGG | 0.501075 | 1.3:+66001110 | MS.gene005956:CDS |
TCAAGTACCTTCTCCAAGAA+AGG | 0.503469 | 1.3:-65997854 | None:intergenic |
GGTTAATCTCCACATGCCCC+AGG | 0.508191 | 1.3:-66001868 | None:intergenic |
TTTGGGTTGGCGATATCTGG+AGG | 0.509662 | 1.3:+65999088 | MS.gene005956:CDS |
CTAAAGGTGATCACTGCAAA+GGG | 0.513629 | 1.3:-66001094 | None:intergenic |
ACCACAACCTTTGCAAAACA+TGG | 0.513949 | 1.3:-65998930 | None:intergenic |
GAAATTCAAGATTGTTGTGA+AGG | 0.518827 | 1.3:+66000104 | MS.gene005956:CDS |
CTGAGTGATGTGGTGCATAA+TGG | 0.522583 | 1.3:+66001890 | MS.gene005956:CDS |
GGTTGGTGCACATGACAAGC+TGG | 0.526836 | 1.3:+66000769 | MS.gene005956:intron |
CATCTAATAAATTCAAGGAA+TGG | 0.529092 | 1.3:+66001932 | MS.gene005956:CDS |
GAACAAGTCATCAAATGGGC+TGG | 0.529916 | 1.3:+65998705 | MS.gene005956:CDS |
ATGTCAAACTGAGCCTGACT+GGG | 0.530491 | 1.3:+66000019 | MS.gene005956:CDS |
TTCTGAATCAAAGCAAGTCA+AGG | 0.530603 | 1.3:+65997427 | MS.gene005956:CDS |
ATTGGAGAACTTGAGATTGA+GGG | 0.531440 | 1.3:-66000128 | None:intergenic |
TATGCCTGAAATTCCTCTCT+GGG | 0.532945 | 1.3:+65997676 | MS.gene005956:CDS |
TATGTGGCCTTTCTTGGAGA+AGG | 0.533642 | 1.3:+65997847 | MS.gene005956:CDS |
GAGTTTGATCAATTGAGCCT+TGG | 0.533999 | 1.3:+65998027 | MS.gene005956:CDS |
GGAGGAATTTGAATCCTCAA+TGG | 0.534114 | 1.3:+66000076 | MS.gene005956:CDS |
CATTGGAAAGTATCAGATCA+AGG | 0.534156 | 1.3:+65997999 | MS.gene005956:CDS |
GTCTATGAAGATCAAAGTGC+AGG | 0.534460 | 1.3:+65998761 | MS.gene005956:CDS |
TTGGGTTGGCGATATCTGGA+GGG | 0.536736 | 1.3:+65999089 | MS.gene005956:CDS |
AAATGAAAAGGAATTGGTCA+TGG | 0.544170 | 1.3:+65998683 | MS.gene005956:CDS |
GCAGGAATCCCTGGGGCATG+TGG | 0.544730 | 1.3:+66001859 | MS.gene005956:intron |
ACAGGAGGCTGACGAAGTTG+AGG | 0.550573 | 1.3:+66001057 | MS.gene005956:CDS |
GCTTTCAGTTGTGGTACAGG+AGG | 0.553427 | 1.3:+66001042 | MS.gene005956:CDS |
TTCACATGTAATATTCCCAC+TGG | 0.557080 | 1.3:-65999940 | None:intergenic |
TGTTGAGATAAAATGGAAGG+TGG | 0.558509 | 1.3:+66001964 | MS.gene005956:CDS |
AAACCAAGAAGAAGACCAAG+AGG | 0.560579 | 1.3:-65997389 | None:intergenic |
CATGGAACAAGTCATCAAAT+GGG | 0.569785 | 1.3:+65998701 | MS.gene005956:CDS |
TTTGTGTACAGGCAATTTGT+GGG | 0.575356 | 1.3:+65997938 | MS.gene005956:intron |
TGTGGTGTCTTTGATGGAGA+AGG | 0.577038 | 1.3:+65998947 | MS.gene005956:CDS |
ACGGCTTAAGCAGCTTTAGA+GGG | 0.581497 | 1.3:-66000805 | None:intergenic |
CAGGAGGCTGACGAAGTTGA+GGG | 0.583761 | 1.3:+66001058 | MS.gene005956:CDS |
GATGAGGTCCAAGAAGGAGC+GGG | 0.586490 | 1.3:+66001016 | MS.gene005956:CDS |
CTCCAAATAAGAAGTTTAGA+GGG | 0.589712 | 1.3:+66000882 | MS.gene005956:CDS |
ATGTGTATCTTCTCATGTAG+AGG | 0.590209 | 1.3:-66001410 | None:intergenic |
AGAATTCCAGTTTATGCTAG+AGG | 0.594294 | 1.3:+66001382 | MS.gene005956:CDS |
GGGGACATCATGTCAATACC+TGG | 0.598945 | 1.3:+65999109 | MS.gene005956:CDS |
TCTAAAGGTGATCACTGCAA+AGG | 0.603963 | 1.3:-66001095 | None:intergenic |
GTTTAGAGGGCAAATTGTGG+TGG | 0.604850 | 1.3:+66000895 | MS.gene005956:CDS |
TCATGTTGAGATAAAATGGA+AGG | 0.606731 | 1.3:+66001961 | MS.gene005956:CDS |
GAAGATAGTATGAAATTCGG+TGG | 0.610289 | 1.3:+66000941 | MS.gene005956:CDS |
AAATTCGGTGGATCGTCAGA+AGG | 0.610425 | 1.3:+66000953 | MS.gene005956:CDS |
GTTCAATGAACAGCCTCATG+TGG | 0.611721 | 1.3:+65999063 | MS.gene005956:intron |
GTCAGAAGGATATGTCAGAA+AGG | 0.615468 | 1.3:+66000967 | MS.gene005956:CDS |
TGTATCTTCTCATGTAGAGG+AGG | 0.615556 | 1.3:-66001407 | None:intergenic |
GTTGGTGCACATGACAAGCT+GGG | 0.617725 | 1.3:+66000770 | MS.gene005956:CDS |
TCTGATGATGAGGTCCAAGA+AGG | 0.618375 | 1.3:+66001010 | MS.gene005956:CDS |
ACATTGAGGTCATGAGCAAG+AGG | 0.623223 | 1.3:+66001429 | MS.gene005956:CDS |
GGGAATATTACATGTGAATG+TGG | 0.627036 | 1.3:+65999945 | MS.gene005956:CDS |
ATAAGTTCTTGCAAAGCAAG+TGG | 0.630851 | 1.3:-65997656 | None:intergenic |
CGAAGAAAACCACTATCAAG+AGG | 0.635234 | 1.3:+66000055 | MS.gene005956:CDS |
CATTATGCACCACATCACTC+AGG | 0.636039 | 1.3:-66001889 | None:intergenic |
ATCTACTTACCACAAATAGT+GGG | 0.638122 | 1.3:-65998060 | None:intergenic |
ACATGAGAAGATACACATTG+AGG | 0.638470 | 1.3:+66001415 | MS.gene005956:CDS |
ACAAGTCTATGATTGGGACA+AGG | 0.641670 | 1.3:+66000152 | MS.gene005956:CDS |
GAAGTTTAGAGGGCAAATTG+TGG | 0.644875 | 1.3:+66000892 | MS.gene005956:CDS |
AGAAAACCCGTCAACCACGT+TGG | 0.649974 | 1.3:+66001354 | MS.gene005956:CDS |
TCAGGTGTCTTCACCCAGAG+AGG | 0.650472 | 1.3:-65997689 | None:intergenic |
GTTAATCTCCACATGCCCCA+GGG | 0.651294 | 1.3:-66001867 | None:intergenic |
TAAGTTCTTGCAAAGCAAGT+GGG | 0.651983 | 1.3:-65997655 | None:intergenic |
TGATGAGGTCCAAGAAGGAG+CGG | 0.653990 | 1.3:+66001015 | MS.gene005956:CDS |
TGGGTTGGCGATATCTGGAG+GGG | 0.654158 | 1.3:+65999090 | MS.gene005956:CDS |
CTTCATAGACAACACATGCA+AGG | 0.656238 | 1.3:-65998748 | None:intergenic |
ATAGGGATTTCCAAGATCTG+AGG | 0.659945 | 1.3:-65999468 | None:intergenic |
AGGCGAAAAGAAAAGGACAA+AGG | 0.660070 | 1.3:+66001117 | MS.gene005956:CDS |
TACTTACCACAAATAGTGGG+AGG | 0.663431 | 1.3:-65998057 | None:intergenic |
GGTAGCAATAAAGAAGCCAG+TGG | 0.667479 | 1.3:+65999924 | MS.gene005956:CDS |
TGATAGTGTATCTGATGATG+AGG | 0.667621 | 1.3:+66001000 | MS.gene005956:CDS |
AGAAAACCACTATCAAGAGG+AGG | 0.672004 | 1.3:+66000058 | MS.gene005956:CDS |
GCCAACCCAAAATCCACATG+AGG | 0.676621 | 1.3:-65999076 | None:intergenic |
CATGGAAGTGTAGACACCAA+AGG | 0.678495 | 1.3:-65998912 | None:intergenic |
AAAGGTCTTAAACTTATCCG+TGG | 0.686462 | 1.3:-65998894 | None:intergenic |
GTAGCAATAAAGAAGCCAGT+GGG | 0.689579 | 1.3:+65999925 | MS.gene005956:CDS |
TGAACAAATCTATAAAGACC+AGG | 0.696952 | 1.3:-65999127 | None:intergenic |
GGAGATTAACCTGAGTGATG+TGG | 0.716776 | 1.3:+66001880 | MS.gene005956:CDS |
TGTCAAACTGAGCCTGACTG+GGG | 0.720631 | 1.3:+66000020 | MS.gene005956:CDS |
TAGTGGGAGGAAGAGTACCA+AGG | 0.732119 | 1.3:-65998044 | None:intergenic |
TGGAATTCTTCATTCCAACG+TGG | 0.738872 | 1.3:-66001368 | None:intergenic |
ACAAAATGCAGGAATCCCTG+GGG | 0.759341 | 1.3:+66001852 | MS.gene005956:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAAATAATATACTAACT+TGG | - | chr1.3:66001288-66001307 | None:intergenic | 10.0% |
!! | AGTTAGTATATTATTTAATT+TGG | + | chr1.3:66001288-66001307 | MS.gene005956:intron | 10.0% |
!! | AAAATCAAAATCAATATTAG+AGG | - | chr1.3:65998841-65998860 | None:intergenic | 15.0% |
!! | AATTATTTATCAGATAAGAA+GGG | - | chr1.3:65999040-65999059 | None:intergenic | 15.0% |
!! | GTTAAATACTAAAATAATTC+AGG | - | chr1.3:65999753-65999772 | None:intergenic | 15.0% |
!! | TAAATATGTGAAGAAAAATA+AGG | - | chr1.3:65999901-65999920 | None:intergenic | 15.0% |
!! | TAATTATTTATCAGATAAGA+AGG | - | chr1.3:65999041-65999060 | None:intergenic | 15.0% |
!! | TATACGCAAAATAATTATTA+GGG | - | chr1.3:65999672-65999691 | None:intergenic | 15.0% |
!! | TCAAACTTTGTTAATAAAAT+TGG | + | chr1.3:66000384-66000403 | MS.gene005956:intron | 15.0% |
!! | TTATACGCAAAATAATTATT+AGG | - | chr1.3:65999673-65999692 | None:intergenic | 15.0% |
!!! | ATTTTTCTTCACATATTTAT+AGG | + | chr1.3:65999902-65999921 | MS.gene005956:intron | 15.0% |
!!! | TATTTTATAATTTTCTGTGA+GGG | - | chr1.3:65998800-65998819 | None:intergenic | 15.0% |
!!! | TTATTTTATAATTTTCTGTG+AGG | - | chr1.3:65998801-65998820 | None:intergenic | 15.0% |
!!! | TTTTACAAATAATATATGCA+AGG | + | chr1.3:65999599-65999618 | MS.gene005956:intron | 15.0% |
!!! | TTTTTCTTCACATATTTATA+GGG | + | chr1.3:65999903-65999922 | MS.gene005956:intron | 15.0% |
!! | AAAACTGATAAAAACAAATG+TGG | - | chr1.3:65997510-65997529 | None:intergenic | 20.0% |
!! | AAACTGATAAAAACAAATGT+GGG | - | chr1.3:65997509-65997528 | None:intergenic | 20.0% |
!! | AAAGTTTCAAGAAATCTATT+AGG | - | chr1.3:66001532-66001551 | None:intergenic | 20.0% |
!! | AAGTATATCGATATTTGATA+AGG | - | chr1.3:65998534-65998553 | None:intergenic | 20.0% |
!! | ATACGCAAAATAATTATTAG+GGG | - | chr1.3:65999671-65999690 | None:intergenic | 20.0% |
!! | ATAGATTTCTTGAAACTTTA+AGG | + | chr1.3:66001533-66001552 | MS.gene005956:intron | 20.0% |
!! | ATTCAAATATGACAATCTTA+AGG | - | chr1.3:66000298-66000317 | None:intergenic | 20.0% |
!! | GTAAATTCTTTATTCTCATA+CGG | - | chr1.3:66000827-66000846 | None:intergenic | 20.0% |
!! | GTTAAATGAAATTTACAACT+AGG | - | chr1.3:65999200-65999219 | None:intergenic | 20.0% |
!! | TAATGAAGAGAAAAATGAAA+TGG | - | chr1.3:66001482-66001501 | None:intergenic | 20.0% |
!! | TAATTCATGTTGAGATAAAA+TGG | + | chr1.3:66001957-66001976 | MS.gene005956:CDS | 20.0% |
!! | TAGATTTCTTGAAACTTTAA+GGG | + | chr1.3:66001534-66001553 | MS.gene005956:intron | 20.0% |
!! | TTAAGATTGTCATATTTGAA+TGG | + | chr1.3:66000297-66000316 | MS.gene005956:intron | 20.0% |
!! | TTCAAATATGACAATCTTAA+GGG | - | chr1.3:66000297-66000316 | None:intergenic | 20.0% |
!!! | ACAAGTTTTTATTTGATATG+TGG | + | chr1.3:65997831-65997850 | MS.gene005956:CDS | 20.0% |
!!! | ATAAGAGTATAATAGTATAG+GGG | + | chr1.3:65998170-65998189 | MS.gene005956:intron | 20.0% |
!!! | ATTTATTTTACGTCAAGATT+GGG | - | chr1.3:65998376-65998395 | None:intergenic | 20.0% |
!!! | CATAAGAGTATAATAGTATA+GGG | + | chr1.3:65998169-65998188 | MS.gene005956:intron | 20.0% |
!!! | CTTTTATATTATTAGAAGTC+AGG | + | chr1.3:65999009-65999028 | MS.gene005956:intron | 20.0% |
!!! | TAGAAGAAATTTTATAGTCA+GGG | + | chr1.3:65998128-65998147 | MS.gene005956:intron | 20.0% |
!!! | TATGTTGACTTATCTAAATA+AGG | - | chr1.3:65999636-65999655 | None:intergenic | 20.0% |
!!! | TCATAAGAGTATAATAGTAT+AGG | + | chr1.3:65998168-65998187 | MS.gene005956:intron | 20.0% |
!!! | TTAGAAGAAATTTTATAGTC+AGG | + | chr1.3:65998127-65998146 | MS.gene005956:intron | 20.0% |
! | AAACTAACTCTTTCATAATC+AGG | - | chr1.3:65997710-65997729 | None:intergenic | 25.0% |
! | AATATGAAAGCTAACTACAT+AGG | - | chr1.3:66001722-66001741 | None:intergenic | 25.0% |
! | ACAGAGATGAAAAATAAGAT+TGG | - | chr1.3:66000714-66000733 | None:intergenic | 25.0% |
! | ACTGAATATTAAATGTGCAT+AGG | - | chr1.3:65999302-65999321 | None:intergenic | 25.0% |
! | AGAGAAGATAGTATGAAATT+CGG | + | chr1.3:66000938-66000957 | MS.gene005956:CDS | 25.0% |
! | AGTACCATCTAATAAATTCA+AGG | + | chr1.3:66001927-66001946 | MS.gene005956:CDS | 25.0% |
! | AGTTGAGATAAATTACATGA+GGG | - | chr1.3:66001831-66001850 | None:intergenic | 25.0% |
! | CATATCATCAATGAATCAAA+TGG | - | chr1.3:66000737-66000756 | None:intergenic | 25.0% |
! | CATCTAATAAATTCAAGGAA+TGG | + | chr1.3:66001932-66001951 | MS.gene005956:CDS | 25.0% |
! | CATGTTTATATATGAATCCT+TGG | + | chr1.3:65998414-65998433 | MS.gene005956:intron | 25.0% |
! | CATTCCTTGAATTTATTAGA+TGG | - | chr1.3:66001934-66001953 | None:intergenic | 25.0% |
! | CCAATGTATTCATCAAATAT+CGG | - | chr1.3:65997985-65998004 | None:intergenic | 25.0% |
! | TAGTTGAGATAAATTACATG+AGG | - | chr1.3:66001832-66001851 | None:intergenic | 25.0% |
! | TATAAGTTCACGTAAGTTAA+AGG | + | chr1.3:65998584-65998603 | MS.gene005956:intron | 25.0% |
! | TCTAGTAGTTGATTATAGAT+TGG | + | chr1.3:65998243-65998262 | MS.gene005956:intron | 25.0% |
! | TTGGTTGAAAGAATTTATTC+TGG | + | chr1.3:66001307-66001326 | MS.gene005956:intron | 25.0% |
! | TTTAATATTCAGTTCGTTGA+TGG | + | chr1.3:65999309-65999328 | MS.gene005956:intron | 25.0% |
! | TTTCTTCTTCAAAGTTATGT+TGG | + | chr1.3:66000621-66000640 | MS.gene005956:intron | 25.0% |
!! | AAAGGTAAAATTTTCTCCTT+CGG | + | chr1.3:66001135-66001154 | MS.gene005956:intron | 25.0% |
!! | AACCATGCAATATTTTCAAA+CGG | + | chr1.3:66000480-66000499 | MS.gene005956:intron | 25.0% |
!! | ACAATTTTCGGAATCATAAT+TGG | - | chr1.3:66001774-66001793 | None:intergenic | 25.0% |
!! | ATATTTTCAAACGGAAACTT+TGG | + | chr1.3:66000489-66000508 | MS.gene005956:intron | 25.0% |
!! | TTTAACTTACGTGAACTTAT+AGG | - | chr1.3:65998585-65998604 | None:intergenic | 25.0% |
!! | TTTTATGCAGTGACAAAAAT+TGG | - | chr1.3:66001204-66001223 | None:intergenic | 25.0% |
!!! | AGTTTTGGAAACAAATGAAA+AGG | + | chr1.3:65998671-65998690 | MS.gene005956:CDS | 25.0% |
!!! | ATATTTGAATGGATTATGGA+TGG | + | chr1.3:66000308-66000327 | MS.gene005956:intron | 25.0% |
!!! | ATTTACACTTGATTTGCTTA+AGG | + | chr1.3:66000841-66000860 | MS.gene005956:CDS | 25.0% |
!!! | CATTTATTTTACGTCAAGAT+TGG | - | chr1.3:65998377-65998396 | None:intergenic | 25.0% |
!!! | CTGGTTACTTTTTCAAATTT+TGG | + | chr1.3:66000191-66000210 | MS.gene005956:intron | 25.0% |
!!! | CTTCTAAAACAGTTGAATTT+CGG | - | chr1.3:65998114-65998133 | None:intergenic | 25.0% |
!!! | CTTTTGAAAATGGATTTGTT+AGG | + | chr1.3:65999982-66000001 | MS.gene005956:CDS | 25.0% |
!!! | GAATTTACCTTTTTTACTAG+AGG | + | chr1.3:66000529-66000548 | MS.gene005956:intron | 25.0% |
!!! | GTTTAGCTTCTAACAATTTT+CGG | - | chr1.3:66001786-66001805 | None:intergenic | 25.0% |
!!! | GTTTGTGTTTTTATTAGTGA+TGG | + | chr1.3:65997897-65997916 | MS.gene005956:intron | 25.0% |
!!! | TGATTTTGATTTTTCTCAGT+TGG | + | chr1.3:65998848-65998867 | MS.gene005956:intron | 25.0% |
!!! | TGTCATATTTGAATGGATTA+TGG | + | chr1.3:66000304-66000323 | MS.gene005956:intron | 25.0% |
!!! | TTTCTTTGTTTTCTGTATGT+CGG | + | chr1.3:66000581-66000600 | MS.gene005956:intron | 25.0% |
!!! | TTTGATTTTTTGTTTGTTGC+AGG | + | chr1.3:65997601-65997620 | MS.gene005956:intron | 25.0% |
AAACATGAGCATTAGCAATT+GGG | + | chr1.3:65999874-65999893 | MS.gene005956:intron | 30.0% | |
AAATGAAAAGGAATTGGTCA+TGG | + | chr1.3:65998683-65998702 | MS.gene005956:CDS | 30.0% | |
AACCATAAAAGTAACTTCAG+TGG | - | chr1.3:65999549-65999568 | None:intergenic | 30.0% | |
AAGTTGCAAACCTTTATCTT+TGG | + | chr1.3:65999445-65999464 | MS.gene005956:CDS | 30.0% | |
ACTCCAAATAAGAAGTTTAG+AGG | + | chr1.3:66000881-66000900 | MS.gene005956:CDS | 30.0% | |
ACTTGATTCAGTGATCATAT+GGG | + | chr1.3:65997871-65997890 | MS.gene005956:intron | 30.0% | |
ATCTACTTACCACAAATAGT+GGG | - | chr1.3:65998063-65998082 | None:intergenic | 30.0% | |
ATTACATGTGAATGTGGTTA+GGG | + | chr1.3:65999951-65999970 | MS.gene005956:CDS | 30.0% | |
CAAGAAATCTATTAGGACTT+AGG | - | chr1.3:66001525-66001544 | None:intergenic | 30.0% | |
CAGAAAACACTAGAAGTAAA+CGG | - | chr1.3:66001561-66001580 | None:intergenic | 30.0% | |
CCAATTACAAGTCTATGATT+GGG | + | chr1.3:66000146-66000165 | MS.gene005956:CDS | 30.0% | |
CCGATATTTGATGAATACAT+TGG | + | chr1.3:65997982-65998001 | MS.gene005956:CDS | 30.0% | |
CTCCAAATAAGAAGTTTAGA+GGG | + | chr1.3:66000882-66000901 | MS.gene005956:CDS | 30.0% | |
GAAATTCAAGATTGTTGTGA+AGG | + | chr1.3:66000104-66000123 | MS.gene005956:CDS | 30.0% | |
GGAAACAAATGAAAAGGAAT+TGG | + | chr1.3:65998677-65998696 | MS.gene005956:CDS | 30.0% | |
GTAAATTCACTCCTTGAAAT+TGG | - | chr1.3:66000517-66000536 | None:intergenic | 30.0% | |
GTTAGACCAATTAGTGAATT+AGG | + | chr1.3:65997632-65997651 | MS.gene005956:CDS | 30.0% | |
TAAACATGAGCATTAGCAAT+TGG | + | chr1.3:65999873-65999892 | MS.gene005956:intron | 30.0% | |
TACTTGATTCAGTGATCATA+TGG | + | chr1.3:65997870-65997889 | MS.gene005956:intron | 30.0% | |
TATCTCAACTAACAAAATGC+AGG | + | chr1.3:66001841-66001860 | MS.gene005956:intron | 30.0% | |
TATTACATGTGAATGTGGTT+AGG | + | chr1.3:65999950-65999969 | MS.gene005956:CDS | 30.0% | |
TCAATTGATCACTAAGAACA+CGG | + | chr1.3:65999230-65999249 | MS.gene005956:intron | 30.0% | |
TCATGTTGAGATAAAATGGA+AGG | + | chr1.3:66001961-66001980 | MS.gene005956:CDS | 30.0% | |
TCCAATTACAAGTCTATGAT+TGG | + | chr1.3:66000145-66000164 | MS.gene005956:CDS | 30.0% | |
TGAACAAATCTATAAAGACC+AGG | - | chr1.3:65999130-65999149 | None:intergenic | 30.0% | |
TGATATTTGCATGTTTCATC+AGG | + | chr1.3:65997796-65997815 | MS.gene005956:intron | 30.0% | |
TTCATACTATCTTCTCTGAA+TGG | - | chr1.3:66000935-66000954 | None:intergenic | 30.0% | |
TTCCGTTTGAAAATATTGCA+TGG | - | chr1.3:66000485-66000504 | None:intergenic | 30.0% | |
TTGAATTTCTCATTCCATTG+AGG | - | chr1.3:66000093-66000112 | None:intergenic | 30.0% | |
TTGCGTATAATATTTCTCAG+TGG | + | chr1.3:65999683-65999702 | MS.gene005956:intron | 30.0% | |
TTTCTTCTAATTGCACTTCT+CGG | + | chr1.3:65998986-65999005 | MS.gene005956:intron | 30.0% | |
! | AGGTTTTACTTATCTTCTTC+TGG | + | chr1.3:66000172-66000191 | MS.gene005956:intron | 30.0% |
! | CTTCATTTGACCATTTTCAA+AGG | - | chr1.3:66000345-66000364 | None:intergenic | 30.0% |
! | TGGTCTTTATAGATTTGTTC+AGG | + | chr1.3:65999129-65999148 | MS.gene005956:CDS | 30.0% |
! | TTATAATTTTCTGTGAGGGT+AGG | - | chr1.3:65998796-65998815 | None:intergenic | 30.0% |
!! | AAACTTTGGAACCAATTTCA+AGG | + | chr1.3:66000503-66000522 | MS.gene005956:intron | 30.0% |
!! | ACGTTGATTCATCAAGAATA+GGG | - | chr1.3:65999488-65999507 | None:intergenic | 30.0% |
!! | CACGTAAGTTAAAGGTATTA+AGG | + | chr1.3:65998592-65998611 | MS.gene005956:intron | 30.0% |
!! | CTTCATTTTGCCTTTGAAAA+TGG | + | chr1.3:66000332-66000351 | MS.gene005956:intron | 30.0% |
!! | TACGTTGATTCATCAAGAAT+AGG | - | chr1.3:65999489-65999508 | None:intergenic | 30.0% |
!! | TATCAGTTTTGTGTAATTCC+AGG | - | chr1.3:65999718-65999737 | None:intergenic | 30.0% |
!!! | GTTTTTTCTGAACTGAATTG+AGG | + | chr1.3:65997525-65997544 | MS.gene005956:intron | 30.0% |
AAAGGTCTTAAACTTATCCG+TGG | - | chr1.3:65998897-65998916 | None:intergenic | 35.0% | |
AAAGTTGACGTCAACAGAAA+TGG | - | chr1.3:65999160-65999179 | None:intergenic | 35.0% | |
AATTGGAGAACTTGAGATTG+AGG | - | chr1.3:66000132-66000151 | None:intergenic | 35.0% | |
ACATGAGAAGATACACATTG+AGG | + | chr1.3:66001415-66001434 | MS.gene005956:CDS | 35.0% | |
AGAATTCCAGTTTATGCTAG+AGG | + | chr1.3:66001382-66001401 | MS.gene005956:CDS | 35.0% | |
AGGCAATTTGTGGGATAATT+AGG | + | chr1.3:65997947-65997966 | MS.gene005956:intron | 35.0% | |
ATAAGTTCTTGCAAAGCAAG+TGG | - | chr1.3:65997659-65997678 | None:intergenic | 35.0% | |
ATATGCAATTAAGTGCAGGT+TGG | + | chr1.3:66000752-66000771 | MS.gene005956:intron | 35.0% | |
ATGTGTATCTTCTCATGTAG+AGG | - | chr1.3:66001413-66001432 | None:intergenic | 35.0% | |
ATTGGAGAACTTGAGATTGA+GGG | - | chr1.3:66000131-66000150 | None:intergenic | 35.0% | |
ATTTGATATGTGGCCTTTCT+TGG | + | chr1.3:65997841-65997860 | MS.gene005956:CDS | 35.0% | |
CAATTGATCACTAAGAACAC+GGG | + | chr1.3:65999231-65999250 | MS.gene005956:intron | 35.0% | |
CATGGAACAAGTCATCAAAT+GGG | + | chr1.3:65998701-65998720 | MS.gene005956:CDS | 35.0% | |
CCAGAATTCACAACGAAAAA+GGG | - | chr1.3:65997559-65997578 | None:intergenic | 35.0% | |
CCCAATCATAGACTTGTAAT+TGG | - | chr1.3:66000149-66000168 | None:intergenic | 35.0% | |
CTATGTGCCTCTAGTAAAAA+AGG | - | chr1.3:66000539-66000558 | None:intergenic | 35.0% | |
GAAATCTATTAGGACTTAGG+AGG | - | chr1.3:66001522-66001541 | None:intergenic | 35.0% | |
GAAGATAGTATGAAATTCGG+TGG | + | chr1.3:66000941-66000960 | MS.gene005956:CDS | 35.0% | |
GACTTATCTAAATAAGGAGC+AGG | - | chr1.3:65999630-65999649 | None:intergenic | 35.0% | |
GATCTACTTACCACAAATAG+TGG | - | chr1.3:65998064-65998083 | None:intergenic | 35.0% | |
GATGATATGCAATTAAGTGC+AGG | + | chr1.3:66000748-66000767 | MS.gene005956:intron | 35.0% | |
GCAAGGTCAATACTATGTTT+GGG | - | chr1.3:65998734-65998753 | None:intergenic | 35.0% | |
GCAATTTGACATTATGTTCG+TGG | + | chr1.3:65998265-65998284 | MS.gene005956:intron | 35.0% | |
GGGAATATTACATGTGAATG+TGG | + | chr1.3:65999945-65999964 | MS.gene005956:CDS | 35.0% | |
GTGTCTACTTTAAACTTCCA+AGG | - | chr1.3:65998434-65998453 | None:intergenic | 35.0% | |
TAAGTTCTTGCAAAGCAAGT+GGG | - | chr1.3:65997658-65997677 | None:intergenic | 35.0% | |
TAGTTAGTTCATGAAGTGCA+GGG | - | chr1.3:65999393-65999412 | None:intergenic | 35.0% | |
TCATGGAACAAGTCATCAAA+TGG | + | chr1.3:65998700-65998719 | MS.gene005956:CDS | 35.0% | |
TGCAAGGTCAATACTATGTT+TGG | - | chr1.3:65998735-65998754 | None:intergenic | 35.0% | |
TGCCCTCTAAACTTCTTATT+TGG | - | chr1.3:66000887-66000906 | None:intergenic | 35.0% | |
TGCTACCAAGAAGATACTTA+CGG | - | chr1.3:65998342-65998361 | None:intergenic | 35.0% | |
TGTTGAGATAAAATGGAAGG+TGG | + | chr1.3:66001964-66001983 | MS.gene005956:CDS | 35.0% | |
TTCACATGTAATATTCCCAC+TGG | - | chr1.3:65999943-65999962 | None:intergenic | 35.0% | |
TTCTGAATCAAAGCAAGTCA+AGG | + | chr1.3:65997427-65997446 | MS.gene005956:CDS | 35.0% | |
TTTGTGTACAGGCAATTTGT+GGG | + | chr1.3:65997938-65997957 | MS.gene005956:intron | 35.0% | |
! | ACGGATAAGTTTAAGACCTT+TGG | + | chr1.3:65998896-65998915 | MS.gene005956:CDS | 35.0% |
! | ACTAAGAACACGGGAATTTT+AGG | + | chr1.3:65999240-65999259 | MS.gene005956:intron | 35.0% |
! | GAAAGTTTCTTGGGTGTTTT+TGG | + | chr1.3:65997350-65997369 | MS.gene005956:CDS | 35.0% |
! | GAACTTCAGTTTTCTGTCAA+AGG | + | chr1.3:66001454-66001473 | MS.gene005956:CDS | 35.0% |
! | GGGTTCTTTGAAAGTTTCTT+GGG | + | chr1.3:65997341-65997360 | MS.gene005956:CDS | 35.0% |
! | TACACTTCCATGTTTTGCAA+AGG | + | chr1.3:65998923-65998942 | MS.gene005956:CDS | 35.0% |
! | TAGTGATGGTGATTGTTTGA+TGG | + | chr1.3:65997911-65997930 | MS.gene005956:intron | 35.0% |
! | TCACTAATTGGTCTAACAAC+AGG | - | chr1.3:65997629-65997648 | None:intergenic | 35.0% |
! | TGATAGTGTATCTGATGATG+AGG | + | chr1.3:66001000-66001019 | MS.gene005956:CDS | 35.0% |
! | TTCTGCAGGTATGAAAGTTT+TGG | + | chr1.3:65998656-65998675 | MS.gene005956:intron | 35.0% |
! | TTTTGTGTACAGGCAATTTG+TGG | + | chr1.3:65997937-65997956 | MS.gene005956:intron | 35.0% |
!! | ACACGGGAATTTTAGGAATT+TGG | + | chr1.3:65999247-65999266 | MS.gene005956:intron | 35.0% |
!! | ACTGTTTGTTGTAATTCTGC+AGG | + | chr1.3:65998642-65998661 | MS.gene005956:intron | 35.0% |
!! | CATTGGAAAGTATCAGATCA+AGG | + | chr1.3:65997999-65998018 | MS.gene005956:CDS | 35.0% |
!! | CCTTTTTCGTTGTGAATTCT+GGG | + | chr1.3:65997557-65997576 | MS.gene005956:intron | 35.0% |
!! | TTTGCTATTGGAATTCCTCT+TGG | + | chr1.3:65997374-65997393 | MS.gene005956:CDS | 35.0% |
!! | TTTTACTAGAGGCACATAGT+TGG | + | chr1.3:66000540-66000559 | MS.gene005956:intron | 35.0% |
!!! | GGTGTTTTTGGTTTTGCTAT+TGG | + | chr1.3:65997362-65997381 | MS.gene005956:CDS | 35.0% |
!!! | TGCCACTGAAGTTACTTTTA+TGG | + | chr1.3:65999544-65999563 | MS.gene005956:intron | 35.0% |
!!! | TTGATGGTGTTTTTGTGTAC+AGG | + | chr1.3:65997927-65997946 | MS.gene005956:intron | 35.0% |
AAACCAAGAAGAAGACCAAG+AGG | - | chr1.3:65997392-65997411 | None:intergenic | 40.0% | |
AAAGGTTGTGGTGTCTTTGA+TGG | + | chr1.3:65998941-65998960 | MS.gene005956:CDS | 40.0% | |
AACAAAATGCAGGAATCCCT+GGG | + | chr1.3:66001851-66001870 | MS.gene005956:intron | 40.0% | |
AATGACATTCACGTCTGAGA+TGG | + | chr1.3:66000452-66000471 | MS.gene005956:intron | 40.0% | |
ACAAGTCTATGATTGGGACA+AGG | + | chr1.3:66000152-66000171 | MS.gene005956:CDS | 40.0% | |
ACCACAACCTTTGCAAAACA+TGG | - | chr1.3:65998933-65998952 | None:intergenic | 40.0% | |
ACGCGTTCGTTATGTTCTAA+AGG | - | chr1.3:65998459-65998478 | None:intergenic | 40.0% | |
AGAAAACCACTATCAAGAGG+AGG | + | chr1.3:66000058-66000077 | MS.gene005956:CDS | 40.0% | |
AGGCGAAAAGAAAAGGACAA+AGG | + | chr1.3:66001117-66001136 | MS.gene005956:CDS | 40.0% | |
AGTGGGCCTAATTCACTAAT+TGG | - | chr1.3:65997641-65997660 | None:intergenic | 40.0% | |
AGTTAGTTCATGAAGTGCAG+GGG | - | chr1.3:65999392-65999411 | None:intergenic | 40.0% | |
ATACTTACGGCACATGTCAA+TGG | - | chr1.3:65998329-65998348 | None:intergenic | 40.0% | |
ATAGGGATTTCCAAGATCTG+AGG | - | chr1.3:65999471-65999490 | None:intergenic | 40.0% | |
ATGTGCCGTAAGTATCTTCT+TGG | + | chr1.3:65998334-65998353 | MS.gene005956:intron | 40.0% | |
CAAATTCCTCCTCTTGATAG+TGG | - | chr1.3:66000067-66000086 | None:intergenic | 40.0% | |
CCCAGAATTCACAACGAAAA+AGG | - | chr1.3:65997560-65997579 | None:intergenic | 40.0% | |
CGAAGAAAACCACTATCAAG+AGG | + | chr1.3:66000055-66000074 | MS.gene005956:CDS | 40.0% | |
CTAAAGGTGATCACTGCAAA+GGG | - | chr1.3:66001097-66001116 | None:intergenic | 40.0% | |
CTTCATAGACAACACATGCA+AGG | - | chr1.3:65998751-65998770 | None:intergenic | 40.0% | |
GAAGTTTAGAGGGCAAATTG+TGG | + | chr1.3:66000892-66000911 | MS.gene005956:CDS | 40.0% | |
GAGTTTGATCAATTGAGCCT+TGG | + | chr1.3:65998027-65998046 | MS.gene005956:CDS | 40.0% | |
GCTGACATTAGATGCTTTCA+AGG | - | chr1.3:66000275-66000294 | None:intergenic | 40.0% | |
GGAGGAATTTGAATCCTCAA+TGG | + | chr1.3:66000076-66000095 | MS.gene005956:CDS | 40.0% | |
GGATATGTCAGAAAGGATAG+TGG | + | chr1.3:66000974-66000993 | MS.gene005956:CDS | 40.0% | |
GTAGCAATAAAGAAGCCAGT+GGG | + | chr1.3:65999925-65999944 | MS.gene005956:CDS | 40.0% | |
GTAGTTAGTTCATGAAGTGC+AGG | - | chr1.3:65999394-65999413 | None:intergenic | 40.0% | |
GTCAGAAGGATATGTCAGAA+AGG | + | chr1.3:66000967-66000986 | MS.gene005956:CDS | 40.0% | |
GTCTATGAAGATCAAAGTGC+AGG | + | chr1.3:65998761-65998780 | MS.gene005956:CDS | 40.0% | |
GTCTTTGATGGAGAAGGTAA+GGG | + | chr1.3:65998953-65998972 | MS.gene005956:intron | 40.0% | |
TAACAAAATGCAGGAATCCC+TGG | + | chr1.3:66001850-66001869 | MS.gene005956:intron | 40.0% | |
TACGTCAAGATTGGGTGATT+TGG | - | chr1.3:65998368-65998387 | None:intergenic | 40.0% | |
TACTTACGGCACATGTCAAT+GGG | - | chr1.3:65998328-65998347 | None:intergenic | 40.0% | |
TATGCCTGAAATTCCTCTCT+GGG | + | chr1.3:65997676-65997695 | MS.gene005956:CDS | 40.0% | |
TCAAGTACCTTCTCCAAGAA+AGG | - | chr1.3:65997857-65997876 | None:intergenic | 40.0% | |
TCTAAAGGTGATCACTGCAA+AGG | - | chr1.3:66001098-66001117 | None:intergenic | 40.0% | |
TGGAATTCTTCATTCCAACG+TGG | - | chr1.3:66001371-66001390 | None:intergenic | 40.0% | |
TGTATCTTCTCATGTAGAGG+AGG | - | chr1.3:66001410-66001429 | None:intergenic | 40.0% | |
TGTCTTTGATGGAGAAGGTA+AGG | + | chr1.3:65998952-65998971 | MS.gene005956:intron | 40.0% | |
TTATCTTTGGCCTCAGATCT+TGG | + | chr1.3:65999458-65999477 | MS.gene005956:CDS | 40.0% | |
TTATGCCTGAAATTCCTCTC+TGG | + | chr1.3:65997675-65997694 | MS.gene005956:CDS | 40.0% | |
TTATGTTCGTGGCTCGAATA+AGG | + | chr1.3:65998276-65998295 | MS.gene005956:intron | 40.0% | |
TTTCTCCTTCGGTATAGATG+TGG | + | chr1.3:66001146-66001165 | MS.gene005956:intron | 40.0% | |
TTTGCAGTGATCACCTTTAG+AGG | + | chr1.3:66001097-66001116 | MS.gene005956:CDS | 40.0% | |
TTTGCTTTCAGTTGTGGTAC+AGG | + | chr1.3:66001039-66001058 | MS.gene005956:CDS | 40.0% | |
! | AACAGCCTCATGTGGATTTT+GGG | + | chr1.3:65999071-65999090 | MS.gene005956:intron | 40.0% |
! | AGATCTGAGGCCAAAGATAA+AGG | - | chr1.3:65999458-65999477 | None:intergenic | 40.0% |
! | ATTCCTCTTGGTCTTCTTCT+TGG | + | chr1.3:65997386-65997405 | MS.gene005956:CDS | 40.0% |
! | CCTTTAGAGGCGAAAAGAAA+AGG | + | chr1.3:66001110-66001129 | MS.gene005956:CDS | 40.0% |
! | CCTTTTCTTTTCGCCTCTAA+AGG | - | chr1.3:66001113-66001132 | None:intergenic | 40.0% |
! | GAAGGTTGTGTTTAGAGTCA+TGG | + | chr1.3:65998217-65998236 | MS.gene005956:intron | 40.0% |
! | GGGGTTCTTTGAAAGTTTCT+TGG | + | chr1.3:65997340-65997359 | MS.gene005956:CDS | 40.0% |
! | TACTTACCACAAATAGTGGG+AGG | - | chr1.3:65998060-65998079 | None:intergenic | 40.0% |
! | TCCATGTTTTGCAAAGGTTG+TGG | + | chr1.3:65998929-65998948 | MS.gene005956:CDS | 40.0% |
!! | CCCTTTTTCGTTGTGAATTC+TGG | + | chr1.3:65997556-65997575 | MS.gene005956:intron | 40.0% |
!! | GCATGTTTCATCAGGTTGAT+TGG | + | chr1.3:65997804-65997823 | MS.gene005956:intron | 40.0% |
!! | GGCAGTCAAGCTTTTGAAAA+TGG | + | chr1.3:65999972-65999991 | MS.gene005956:CDS | 40.0% |
!!! | TTGATAGTGGTTTTCTTCGC+TGG | - | chr1.3:66000054-66000073 | None:intergenic | 40.0% |
ACAAAATGCAGGAATCCCTG+GGG | + | chr1.3:66001852-66001871 | MS.gene005956:intron | 45.0% | |
ACATTGAGGTCATGAGCAAG+AGG | + | chr1.3:66001429-66001448 | MS.gene005956:CDS | 45.0% | |
ACTAGGAAACTTCCATTCGC+AGG | - | chr1.3:65999183-65999202 | None:intergenic | 45.0% | |
ACTCTTCCTCCCACTATTTG+TGG | + | chr1.3:65998051-65998070 | MS.gene005956:CDS | 45.0% | |
ATGTCAAACTGAGCCTGACT+GGG | + | chr1.3:66000019-66000038 | MS.gene005956:CDS | 45.0% | |
CATTATGCACCACATCACTC+AGG | - | chr1.3:66001892-66001911 | None:intergenic | 45.0% | |
CTGAGTGATGTGGTGCATAA+TGG | + | chr1.3:66001890-66001909 | MS.gene005956:CDS | 45.0% | |
CTTCATTCCAACGTGGTTGA+CGG | - | chr1.3:66001364-66001383 | None:intergenic | 45.0% | |
GAACAAGTCATCAAATGGGC+TGG | + | chr1.3:65998705-65998724 | MS.gene005956:CDS | 45.0% | |
GGAGATTAACCTGAGTGATG+TGG | + | chr1.3:66001880-66001899 | MS.gene005956:CDS | 45.0% | |
GGTAGCAATAAAGAAGCCAG+TGG | + | chr1.3:65999924-65999943 | MS.gene005956:CDS | 45.0% | |
GTCAGGCTCAGTTTGACATA+TGG | - | chr1.3:66000018-66000037 | None:intergenic | 45.0% | |
GTTAGTTCATGAAGTGCAGG+GGG | - | chr1.3:65999391-65999410 | None:intergenic | 45.0% | |
GTTCAATGAACAGCCTCATG+TGG | + | chr1.3:65999063-65999082 | MS.gene005956:intron | 45.0% | |
GTTTAGAGGGCAAATTGTGG+TGG | + | chr1.3:66000895-66000914 | MS.gene005956:CDS | 45.0% | |
TAACTACTTCAGTTGCTCGC+AGG | + | chr1.3:65999407-65999426 | MS.gene005956:intron | 45.0% | |
TATGTCAAACTGAGCCTGAC+TGG | + | chr1.3:66000018-66000037 | MS.gene005956:CDS | 45.0% | |
TATGTGGCCTTTCTTGGAGA+AGG | + | chr1.3:65997847-65997866 | MS.gene005956:CDS | 45.0% | |
TCTCAGTGGCTAACAATTCC+TGG | + | chr1.3:65999697-65999716 | MS.gene005956:intron | 45.0% | |
TGTGGTGTCTTTGATGGAGA+AGG | + | chr1.3:65998947-65998966 | MS.gene005956:CDS | 45.0% | |
TTAGTTCATGAAGTGCAGGG+GGG | - | chr1.3:65999390-65999409 | None:intergenic | 45.0% | |
TTCACCCAGAGAGGAATTTC+AGG | - | chr1.3:65997683-65997702 | None:intergenic | 45.0% | |
TTCATTCCAACGTGGTTGAC+GGG | - | chr1.3:66001363-66001382 | None:intergenic | 45.0% | |
TTGAGCCACATCTATACCGA+AGG | - | chr1.3:66001154-66001173 | None:intergenic | 45.0% | |
! | AAATTCGGTGGATCGTCAGA+AGG | + | chr1.3:66000953-66000972 | MS.gene005956:CDS | 45.0% |
! | AATCGAGTTGTGGAGATCGA+GGG | + | chr1.3:65998194-65998213 | MS.gene005956:intron | 45.0% |
! | ACATTCACGTCTGAGATGGA+CGG | + | chr1.3:66000456-66000475 | MS.gene005956:intron | 45.0% |
! | AGGCAGAGTGTTTGGTCAAT+AGG | - | chr1.3:66000255-66000274 | None:intergenic | 45.0% |
! | CATGGAAGTGTAGACACCAA+AGG | - | chr1.3:65998915-65998934 | None:intergenic | 45.0% |
! | GAACAGCCTCATGTGGATTT+TGG | + | chr1.3:65999070-65999089 | MS.gene005956:intron | 45.0% |
! | TACAAGTTTTTGCGACGCCA+CGG | + | chr1.3:65998877-65998896 | MS.gene005956:CDS | 45.0% |
! | TACGGCTTAAGCAGCTTTAG+AGG | - | chr1.3:66000809-66000828 | None:intergenic | 45.0% |
! | TCTGATGATGAGGTCCAAGA+AGG | + | chr1.3:66001010-66001029 | MS.gene005956:CDS | 45.0% |
! | TGCTTTCAAGGCAGAGTGTT+TGG | - | chr1.3:66000263-66000282 | None:intergenic | 45.0% |
!! | ACGGCTTAAGCAGCTTTAGA+GGG | - | chr1.3:66000808-66000827 | None:intergenic | 45.0% |
!!! | GATTTTGGGTTGGCGATATC+TGG | + | chr1.3:65999085-65999104 | MS.gene005956:CDS | 45.0% |
AAAGCAAACCCGCTCCTTCT+TGG | - | chr1.3:66001027-66001046 | None:intergenic | 50.0% | |
AGAAAACCCGTCAACCACGT+TGG | + | chr1.3:66001354-66001373 | MS.gene005956:CDS | 50.0% | |
GACGTCAACTTTCCTGCGAA+TGG | + | chr1.3:65999168-65999187 | MS.gene005956:intron | 50.0% | |
GAGGCTCCTCTAGCATAAAC+TGG | - | chr1.3:66001391-66001410 | None:intergenic | 50.0% | |
GCCAACCCAAAATCCACATG+AGG | - | chr1.3:65999079-65999098 | None:intergenic | 50.0% | |
GCTTTCAGTTGTGGTACAGG+AGG | + | chr1.3:66001042-66001061 | MS.gene005956:CDS | 50.0% | |
GGGGACATCATGTCAATACC+TGG | + | chr1.3:65999109-65999128 | MS.gene005956:CDS | 50.0% | |
GTTAATCTCCACATGCCCCA+GGG | - | chr1.3:66001870-66001889 | None:intergenic | 50.0% | |
GTTGGTGCACATGACAAGCT+GGG | + | chr1.3:66000770-66000789 | MS.gene005956:CDS | 50.0% | |
TGATGAGGTCCAAGAAGGAG+CGG | + | chr1.3:66001015-66001034 | MS.gene005956:CDS | 50.0% | |
TGTCAAACTGAGCCTGACTG+GGG | + | chr1.3:66000020-66000039 | MS.gene005956:CDS | 50.0% | |
! | AGCGGGTTTGCTTTCAGTTG+TGG | + | chr1.3:66001033-66001052 | MS.gene005956:CDS | 50.0% |
! | ATCGAGTTGTGGAGATCGAG+GGG | + | chr1.3:65998195-65998214 | MS.gene005956:intron | 50.0% |
! | CAATCGAGTTGTGGAGATCG+AGG | + | chr1.3:65998193-65998212 | MS.gene005956:intron | 50.0% |
! | GTATAGGGGCAATCGAGTTG+TGG | + | chr1.3:65998184-65998203 | MS.gene005956:intron | 50.0% |
!! | GCCTCATGTGGATTTTGGGT+TGG | + | chr1.3:65999075-65999094 | MS.gene005956:intron | 50.0% |
!! | TAGTGGGAGGAAGAGTACCA+AGG | - | chr1.3:65998047-65998066 | None:intergenic | 50.0% |
!! | TTGGGTTGGCGATATCTGGA+GGG | + | chr1.3:65999089-65999108 | MS.gene005956:CDS | 50.0% |
!! | TTTGGGTTGGCGATATCTGG+AGG | + | chr1.3:65999088-65999107 | MS.gene005956:CDS | 50.0% |
ACAGGAGGCTGACGAAGTTG+AGG | + | chr1.3:66001057-66001076 | MS.gene005956:CDS | 55.0% | |
AGTTGTGGAGATCGAGGGGA+AGG | + | chr1.3:65998199-65998218 | MS.gene005956:intron | 55.0% | |
CAGGAGGCTGACGAAGTTGA+GGG | + | chr1.3:66001058-66001077 | MS.gene005956:CDS | 55.0% | |
CTGGAAGTTTGTCCCCAGTC+AGG | - | chr1.3:66000035-66000054 | None:intergenic | 55.0% | |
GATGAGGTCCAAGAAGGAGC+GGG | + | chr1.3:66001016-66001035 | MS.gene005956:CDS | 55.0% | |
GGTTAATCTCCACATGCCCC+AGG | - | chr1.3:66001871-66001890 | None:intergenic | 55.0% | |
TCAGGTGTCTTCACCCAGAG+AGG | - | chr1.3:65997692-65997711 | None:intergenic | 55.0% | |
! | GGTTGGTGCACATGACAAGC+TGG | + | chr1.3:66000769-66000788 | MS.gene005956:intron | 55.0% |
!! | TGGGTTGGCGATATCTGGAG+GGG | + | chr1.3:65999090-65999109 | MS.gene005956:CDS | 55.0% |
GCAGGAATCCCTGGGGCATG+TGG | + | chr1.3:66001859-66001878 | MS.gene005956:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 65997338 | 66001991 | 65997338 | ID=MS.gene005956 |
chr1.3 | mRNA | 65997338 | 66001991 | 65997338 | ID=MS.gene005956.t1;Parent=MS.gene005956 |
chr1.3 | exon | 65997338 | 65997448 | 65997338 | ID=MS.gene005956.t1.exon1;Parent=MS.gene005956.t1 |
chr1.3 | CDS | 65997338 | 65997448 | 65997338 | ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1 |
chr1.3 | exon | 65997623 | 65997721 | 65997623 | ID=MS.gene005956.t1.exon2;Parent=MS.gene005956.t1 |
chr1.3 | CDS | 65997623 | 65997721 | 65997623 | ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1 |
chr1.3 | exon | 65997818 | 65997868 | 65997818 | ID=MS.gene005956.t1.exon3;Parent=MS.gene005956.t1 |
chr1.3 | CDS | 65997818 | 65997868 | 65997818 | ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1 |
chr1.3 | exon | 65997949 | 65998072 | 65997949 | ID=MS.gene005956.t1.exon4;Parent=MS.gene005956.t1 |
chr1.3 | CDS | 65997949 | 65998072 | 65997949 | ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1 |
chr1.3 | exon | 65998664 | 65998782 | 65998664 | ID=MS.gene005956.t1.exon5;Parent=MS.gene005956.t1 |
chr1.3 | CDS | 65998664 | 65998782 | 65998664 | ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1 |
chr1.3 | exon | 65998867 | 65998968 | 65998867 | ID=MS.gene005956.t1.exon6;Parent=MS.gene005956.t1 |
chr1.3 | CDS | 65998867 | 65998968 | 65998867 | ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1 |
chr1.3 | exon | 65999076 | 65999150 | 65999076 | ID=MS.gene005956.t1.exon7;Parent=MS.gene005956.t1 |
chr1.3 | CDS | 65999076 | 65999150 | 65999076 | ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1 |
chr1.3 | exon | 65999429 | 65999505 | 65999429 | ID=MS.gene005956.t1.exon8;Parent=MS.gene005956.t1 |
chr1.3 | CDS | 65999429 | 65999505 | 65999429 | ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1 |
chr1.3 | exon | 65999924 | 66000173 | 65999924 | ID=MS.gene005956.t1.exon9;Parent=MS.gene005956.t1 |
chr1.3 | CDS | 65999924 | 66000173 | 65999924 | ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1 |
chr1.3 | exon | 66000770 | 66001138 | 66000770 | ID=MS.gene005956.t1.exon10;Parent=MS.gene005956.t1 |
chr1.3 | CDS | 66000770 | 66001138 | 66000770 | ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1 |
chr1.3 | exon | 66001347 | 66001475 | 66001347 | ID=MS.gene005956.t1.exon11;Parent=MS.gene005956.t1 |
chr1.3 | CDS | 66001347 | 66001475 | 66001347 | ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1 |
chr1.3 | exon | 66001863 | 66001991 | 66001863 | ID=MS.gene005956.t1.exon12;Parent=MS.gene005956.t1 |
chr1.3 | CDS | 66001863 | 66001991 | 66001863 | ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1 |
Gene Sequence |
Protein sequence |