AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005956


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005956.t1 MTR_1g094810 96.507 544 4 1 1 544 1 529 0.0 1060
MS.gene005956.t1 MTR_4g073400 55.577 529 226 3 17 544 17 537 0.0 611
MS.gene005956.t1 MTR_1g025550 53.211 545 242 4 1 543 1 534 0.0 596
MS.gene005956.t1 MTR_4g115660 30.309 518 321 14 53 541 51 557 1.78e-73 244
MS.gene005956.t1 MTR_7g075790 32.278 474 286 14 3 453 4 465 1.54e-66 224
MS.gene005956.t1 MTR_3g106660 26.571 557 356 17 21 541 17 556 3.20e-62 214
MS.gene005956.t1 MTR_8g035590 31.920 401 251 11 11 395 1 395 9.95e-58 201
MS.gene005956.t1 MTR_4g073510 44.776 134 61 3 327 459 193 314 2.15e-22 100
MS.gene005956.t1 MTR_7g080570 41.803 122 67 4 422 540 43 163 1.99e-20 89.0
MS.gene005956.t1 MTR_2g072180 23.288 292 195 10 67 335 72 357 3.77e-14 75.9
MS.gene005956.t1 MTR_8g032320 31.410 156 97 3 259 414 2 147 1.31e-13 68.9
MS.gene005956.t1 MTR_8g032300 30.573 157 97 4 259 414 2 147 4.48e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005956.t1 AT5G04220 64.954 545 179 4 1 541 1 537 0.0 703
MS.gene005956.t1 AT5G04220 66.667 483 149 4 63 541 1 475 0.0 651
MS.gene005956.t1 AT2G20990 53.102 548 245 5 1 544 1 540 0.0 609
MS.gene005956.t1 AT1G20080 51.565 543 253 4 1 542 1 534 0.0 597
MS.gene005956.t1 AT1G20080 51.565 543 253 4 1 542 1 534 0.0 597
MS.gene005956.t1 AT1G20080 51.565 543 253 4 1 542 1 534 0.0 597
MS.gene005956.t1 AT1G20080 51.565 543 253 4 1 542 1 534 0.0 597
MS.gene005956.t1 AT1G20080 51.565 543 253 4 1 542 1 534 0.0 597
MS.gene005956.t1 AT2G20990 50.874 572 245 6 1 544 1 564 0.0 595
MS.gene005956.t1 AT2G20990 49.659 586 245 6 1 544 1 578 0.0 591
MS.gene005956.t1 AT5G04220 65.109 321 100 4 225 541 3 315 4.87e-140 407
MS.gene005956.t1 AT1G05500 29.401 568 347 16 11 541 1 551 2.11e-77 254
MS.gene005956.t1 AT2G21010 45.725 269 129 5 279 544 1 255 3.80e-77 244
MS.gene005956.t1 AT3G61050 33.005 406 249 12 1 395 1 394 8.04e-59 204
MS.gene005956.t1 AT3G61050 33.005 406 249 12 1 395 1 394 8.04e-59 204
MS.gene005956.t1 AT1G05500 31.678 423 246 12 146 541 1 407 4.85e-56 194
MS.gene005956.t1 AT3G60950 27.961 304 160 10 71 367 39 290 1.69e-24 108
MS.gene005956.t1 AT3G61030 27.632 304 154 9 71 367 39 283 5.99e-23 102
MS.gene005956.t1 AT2G21040 50.649 77 37 1 425 500 15 91 1.54e-20 92.0
MS.gene005956.t1 AT1G50260 26.452 310 200 11 69 354 190 495 5.82e-15 78.6
MS.gene005956.t1 AT1G53590 24.149 323 214 10 67 365 68 383 3.94e-12 69.7
MS.gene005956.t1 AT1G70810 36.957 92 53 3 260 351 5 91 6.47e-11 61.6
MS.gene005956.t1 AT5G47710 38.542 96 54 3 258 353 3 93 6.80e-11 61.6
MS.gene005956.t1 AT5G47710 38.542 96 54 3 258 353 3 93 6.80e-11 61.6
MS.gene005956.t1 AT5G47710 38.542 96 54 3 258 353 3 93 6.80e-11 61.6
MS.gene005956.t1 AT5G47710 38.542 96 54 3 258 353 3 93 6.80e-11 61.6
MS.gene005956.t1 AT1G70800 37.624 101 58 4 251 351 5 100 7.10e-11 61.6
MS.gene005956.t1 AT1G70790 41.379 87 46 3 258 344 4 85 8.02e-11 61.6
MS.gene005956.t1 AT1G70790 41.379 87 46 3 258 344 4 85 8.02e-11 61.6
MS.gene005956.t1 AT1G70790 41.379 87 46 3 258 344 4 85 8.02e-11 61.6

Find 142 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAGCCTCATGTGGATTT+TGG 0.116996 1.3:+65999070 MS.gene005956:intron
TGCCCTCTAAACTTCTTATT+TGG 0.168636 1.3:-66000884 None:intergenic
ATTCCTCTTGGTCTTCTTCT+TGG 0.184387 1.3:+65997386 MS.gene005956:CDS
CCCAATCATAGACTTGTAAT+TGG 0.238477 1.3:-66000146 None:intergenic
AGGCAATTTGTGGGATAATT+AGG 0.254471 1.3:+65997947 MS.gene005956:intron
GTTAGACCAATTAGTGAATT+AGG 0.267667 1.3:+65997632 MS.gene005956:CDS
ATTTGATATGTGGCCTTTCT+TGG 0.280149 1.3:+65997841 MS.gene005956:CDS
TTCTGCAGGTATGAAAGTTT+TGG 0.282874 1.3:+65998656 MS.gene005956:intron
AAAGCAAACCCGCTCCTTCT+TGG 0.286531 1.3:-66001024 None:intergenic
TGCAAGGTCAATACTATGTT+TGG 0.291324 1.3:-65998732 None:intergenic
TTTGCAGTGATCACCTTTAG+AGG 0.302647 1.3:+66001097 MS.gene005956:CDS
TAATTCATGTTGAGATAAAA+TGG 0.314770 1.3:+66001957 MS.gene005956:CDS
TCCAATTACAAGTCTATGAT+TGG 0.315176 1.3:+66000145 MS.gene005956:CDS
GGGGTTCTTTGAAAGTTTCT+TGG 0.325108 1.3:+65997340 MS.gene005956:CDS
CATTCCTTGAATTTATTAGA+TGG 0.332392 1.3:-66001931 None:intergenic
AGTGGGCCTAATTCACTAAT+TGG 0.335206 1.3:-65997638 None:intergenic
TTATCTTTGGCCTCAGATCT+TGG 0.336761 1.3:+65999458 MS.gene005956:CDS
CCAATGTATTCATCAAATAT+CGG 0.340064 1.3:-65997982 None:intergenic
TTCACCCAGAGAGGAATTTC+AGG 0.340892 1.3:-65997680 None:intergenic
GGAAACAAATGAAAAGGAAT+TGG 0.343840 1.3:+65998677 MS.gene005956:CDS
AAGTTGCAAACCTTTATCTT+TGG 0.347676 1.3:+65999445 MS.gene005956:CDS
TACGGCTTAAGCAGCTTTAG+AGG 0.354225 1.3:-66000806 None:intergenic
ACGTTGATTCATCAAGAATA+GGG 0.369250 1.3:-65999485 None:intergenic
TGGTCTTTATAGATTTGTTC+AGG 0.370982 1.3:+65999129 MS.gene005956:CDS
CAAATTCCTCCTCTTGATAG+TGG 0.371588 1.3:-66000064 None:intergenic
ACGGATAAGTTTAAGACCTT+TGG 0.374525 1.3:+65998896 MS.gene005956:CDS
TATTACATGTGAATGTGGTT+AGG 0.379262 1.3:+65999950 MS.gene005956:CDS
AAACTAACTCTTTCATAATC+AGG 0.381483 1.3:-65997707 None:intergenic
AGATCTGAGGCCAAAGATAA+AGG 0.387195 1.3:-65999455 None:intergenic
GGGTTCTTTGAAAGTTTCTT+GGG 0.389257 1.3:+65997341 MS.gene005956:CDS
GATCTACTTACCACAAATAG+TGG 0.393353 1.3:-65998061 None:intergenic
TACGTTGATTCATCAAGAAT+AGG 0.403364 1.3:-65999486 None:intergenic
ATTTACACTTGATTTGCTTA+AGG 0.404829 1.3:+66000841 MS.gene005956:CDS
TTTGCTATTGGAATTCCTCT+TGG 0.405196 1.3:+65997374 MS.gene005956:CDS
GAGGCTCCTCTAGCATAAAC+TGG 0.415645 1.3:-66001388 None:intergenic
TATGTCAAACTGAGCCTGAC+TGG 0.419431 1.3:+66000018 MS.gene005956:CDS
ACTCCAAATAAGAAGTTTAG+AGG 0.424971 1.3:+66000881 MS.gene005956:CDS
GCATGTTTCATCAGGTTGAT+TGG 0.427787 1.3:+65997804 MS.gene005956:intron
TCATGGAACAAGTCATCAAA+TGG 0.428179 1.3:+65998700 MS.gene005956:CDS
TTTGCTTTCAGTTGTGGTAC+AGG 0.430496 1.3:+66001039 MS.gene005956:CDS
AAAGGTTGTGGTGTCTTTGA+TGG 0.436285 1.3:+65998941 MS.gene005956:CDS
GCAAGGTCAATACTATGTTT+GGG 0.443699 1.3:-65998731 None:intergenic
TTCATACTATCTTCTCTGAA+TGG 0.445049 1.3:-66000932 None:intergenic
TTATGCCTGAAATTCCTCTC+TGG 0.446224 1.3:+65997675 MS.gene005956:CDS
ACTCTTCCTCCCACTATTTG+TGG 0.446962 1.3:+65998051 MS.gene005956:CDS
TCACTAATTGGTCTAACAAC+AGG 0.448248 1.3:-65997626 None:intergenic
TAACAAAATGCAGGAATCCC+TGG 0.449558 1.3:+66001850 MS.gene005956:intron
GTAAATTCTTTATTCTCATA+CGG 0.450526 1.3:-66000824 None:intergenic
GTCAGGCTCAGTTTGACATA+TGG 0.457579 1.3:-66000015 None:intergenic
TTCATTCCAACGTGGTTGAC+GGG 0.462970 1.3:-66001360 None:intergenic
CTGGAAGTTTGTCCCCAGTC+AGG 0.464687 1.3:-66000032 None:intergenic
AGAGAAGATAGTATGAAATT+CGG 0.467927 1.3:+66000938 MS.gene005956:CDS
CTTCATTCCAACGTGGTTGA+CGG 0.468702 1.3:-66001361 None:intergenic
AACAAAATGCAGGAATCCCT+GGG 0.473300 1.3:+66001851 MS.gene005956:intron
AGCGGGTTTGCTTTCAGTTG+TGG 0.476841 1.3:+66001033 MS.gene005956:CDS
AGTACCATCTAATAAATTCA+AGG 0.478035 1.3:+66001927 MS.gene005956:CDS
ATTACATGTGAATGTGGTTA+GGG 0.483908 1.3:+65999951 MS.gene005956:CDS
CCAATTACAAGTCTATGATT+GGG 0.487047 1.3:+66000146 MS.gene005956:CDS
GGATATGTCAGAAAGGATAG+TGG 0.491916 1.3:+66000974 MS.gene005956:CDS
CCGATATTTGATGAATACAT+TGG 0.492052 1.3:+65997982 MS.gene005956:CDS
AATTGGAGAACTTGAGATTG+AGG 0.492351 1.3:-66000129 None:intergenic
TTGAATTTCTCATTCCATTG+AGG 0.492601 1.3:-66000090 None:intergenic
CCTTTAGAGGCGAAAAGAAA+AGG 0.501075 1.3:+66001110 MS.gene005956:CDS
TCAAGTACCTTCTCCAAGAA+AGG 0.503469 1.3:-65997854 None:intergenic
GGTTAATCTCCACATGCCCC+AGG 0.508191 1.3:-66001868 None:intergenic
TTTGGGTTGGCGATATCTGG+AGG 0.509662 1.3:+65999088 MS.gene005956:CDS
CTAAAGGTGATCACTGCAAA+GGG 0.513629 1.3:-66001094 None:intergenic
ACCACAACCTTTGCAAAACA+TGG 0.513949 1.3:-65998930 None:intergenic
GAAATTCAAGATTGTTGTGA+AGG 0.518827 1.3:+66000104 MS.gene005956:CDS
CTGAGTGATGTGGTGCATAA+TGG 0.522583 1.3:+66001890 MS.gene005956:CDS
GGTTGGTGCACATGACAAGC+TGG 0.526836 1.3:+66000769 MS.gene005956:intron
CATCTAATAAATTCAAGGAA+TGG 0.529092 1.3:+66001932 MS.gene005956:CDS
GAACAAGTCATCAAATGGGC+TGG 0.529916 1.3:+65998705 MS.gene005956:CDS
ATGTCAAACTGAGCCTGACT+GGG 0.530491 1.3:+66000019 MS.gene005956:CDS
TTCTGAATCAAAGCAAGTCA+AGG 0.530603 1.3:+65997427 MS.gene005956:CDS
ATTGGAGAACTTGAGATTGA+GGG 0.531440 1.3:-66000128 None:intergenic
TATGCCTGAAATTCCTCTCT+GGG 0.532945 1.3:+65997676 MS.gene005956:CDS
TATGTGGCCTTTCTTGGAGA+AGG 0.533642 1.3:+65997847 MS.gene005956:CDS
GAGTTTGATCAATTGAGCCT+TGG 0.533999 1.3:+65998027 MS.gene005956:CDS
GGAGGAATTTGAATCCTCAA+TGG 0.534114 1.3:+66000076 MS.gene005956:CDS
CATTGGAAAGTATCAGATCA+AGG 0.534156 1.3:+65997999 MS.gene005956:CDS
GTCTATGAAGATCAAAGTGC+AGG 0.534460 1.3:+65998761 MS.gene005956:CDS
TTGGGTTGGCGATATCTGGA+GGG 0.536736 1.3:+65999089 MS.gene005956:CDS
AAATGAAAAGGAATTGGTCA+TGG 0.544170 1.3:+65998683 MS.gene005956:CDS
GCAGGAATCCCTGGGGCATG+TGG 0.544730 1.3:+66001859 MS.gene005956:intron
ACAGGAGGCTGACGAAGTTG+AGG 0.550573 1.3:+66001057 MS.gene005956:CDS
GCTTTCAGTTGTGGTACAGG+AGG 0.553427 1.3:+66001042 MS.gene005956:CDS
TTCACATGTAATATTCCCAC+TGG 0.557080 1.3:-65999940 None:intergenic
TGTTGAGATAAAATGGAAGG+TGG 0.558509 1.3:+66001964 MS.gene005956:CDS
AAACCAAGAAGAAGACCAAG+AGG 0.560579 1.3:-65997389 None:intergenic
CATGGAACAAGTCATCAAAT+GGG 0.569785 1.3:+65998701 MS.gene005956:CDS
TTTGTGTACAGGCAATTTGT+GGG 0.575356 1.3:+65997938 MS.gene005956:intron
TGTGGTGTCTTTGATGGAGA+AGG 0.577038 1.3:+65998947 MS.gene005956:CDS
ACGGCTTAAGCAGCTTTAGA+GGG 0.581497 1.3:-66000805 None:intergenic
CAGGAGGCTGACGAAGTTGA+GGG 0.583761 1.3:+66001058 MS.gene005956:CDS
GATGAGGTCCAAGAAGGAGC+GGG 0.586490 1.3:+66001016 MS.gene005956:CDS
CTCCAAATAAGAAGTTTAGA+GGG 0.589712 1.3:+66000882 MS.gene005956:CDS
ATGTGTATCTTCTCATGTAG+AGG 0.590209 1.3:-66001410 None:intergenic
AGAATTCCAGTTTATGCTAG+AGG 0.594294 1.3:+66001382 MS.gene005956:CDS
GGGGACATCATGTCAATACC+TGG 0.598945 1.3:+65999109 MS.gene005956:CDS
TCTAAAGGTGATCACTGCAA+AGG 0.603963 1.3:-66001095 None:intergenic
GTTTAGAGGGCAAATTGTGG+TGG 0.604850 1.3:+66000895 MS.gene005956:CDS
TCATGTTGAGATAAAATGGA+AGG 0.606731 1.3:+66001961 MS.gene005956:CDS
GAAGATAGTATGAAATTCGG+TGG 0.610289 1.3:+66000941 MS.gene005956:CDS
AAATTCGGTGGATCGTCAGA+AGG 0.610425 1.3:+66000953 MS.gene005956:CDS
GTTCAATGAACAGCCTCATG+TGG 0.611721 1.3:+65999063 MS.gene005956:intron
GTCAGAAGGATATGTCAGAA+AGG 0.615468 1.3:+66000967 MS.gene005956:CDS
TGTATCTTCTCATGTAGAGG+AGG 0.615556 1.3:-66001407 None:intergenic
GTTGGTGCACATGACAAGCT+GGG 0.617725 1.3:+66000770 MS.gene005956:CDS
TCTGATGATGAGGTCCAAGA+AGG 0.618375 1.3:+66001010 MS.gene005956:CDS
ACATTGAGGTCATGAGCAAG+AGG 0.623223 1.3:+66001429 MS.gene005956:CDS
GGGAATATTACATGTGAATG+TGG 0.627036 1.3:+65999945 MS.gene005956:CDS
ATAAGTTCTTGCAAAGCAAG+TGG 0.630851 1.3:-65997656 None:intergenic
CGAAGAAAACCACTATCAAG+AGG 0.635234 1.3:+66000055 MS.gene005956:CDS
CATTATGCACCACATCACTC+AGG 0.636039 1.3:-66001889 None:intergenic
ATCTACTTACCACAAATAGT+GGG 0.638122 1.3:-65998060 None:intergenic
ACATGAGAAGATACACATTG+AGG 0.638470 1.3:+66001415 MS.gene005956:CDS
ACAAGTCTATGATTGGGACA+AGG 0.641670 1.3:+66000152 MS.gene005956:CDS
GAAGTTTAGAGGGCAAATTG+TGG 0.644875 1.3:+66000892 MS.gene005956:CDS
AGAAAACCCGTCAACCACGT+TGG 0.649974 1.3:+66001354 MS.gene005956:CDS
TCAGGTGTCTTCACCCAGAG+AGG 0.650472 1.3:-65997689 None:intergenic
GTTAATCTCCACATGCCCCA+GGG 0.651294 1.3:-66001867 None:intergenic
TAAGTTCTTGCAAAGCAAGT+GGG 0.651983 1.3:-65997655 None:intergenic
TGATGAGGTCCAAGAAGGAG+CGG 0.653990 1.3:+66001015 MS.gene005956:CDS
TGGGTTGGCGATATCTGGAG+GGG 0.654158 1.3:+65999090 MS.gene005956:CDS
CTTCATAGACAACACATGCA+AGG 0.656238 1.3:-65998748 None:intergenic
ATAGGGATTTCCAAGATCTG+AGG 0.659945 1.3:-65999468 None:intergenic
AGGCGAAAAGAAAAGGACAA+AGG 0.660070 1.3:+66001117 MS.gene005956:CDS
TACTTACCACAAATAGTGGG+AGG 0.663431 1.3:-65998057 None:intergenic
GGTAGCAATAAAGAAGCCAG+TGG 0.667479 1.3:+65999924 MS.gene005956:CDS
TGATAGTGTATCTGATGATG+AGG 0.667621 1.3:+66001000 MS.gene005956:CDS
AGAAAACCACTATCAAGAGG+AGG 0.672004 1.3:+66000058 MS.gene005956:CDS
GCCAACCCAAAATCCACATG+AGG 0.676621 1.3:-65999076 None:intergenic
CATGGAAGTGTAGACACCAA+AGG 0.678495 1.3:-65998912 None:intergenic
AAAGGTCTTAAACTTATCCG+TGG 0.686462 1.3:-65998894 None:intergenic
GTAGCAATAAAGAAGCCAGT+GGG 0.689579 1.3:+65999925 MS.gene005956:CDS
TGAACAAATCTATAAAGACC+AGG 0.696952 1.3:-65999127 None:intergenic
GGAGATTAACCTGAGTGATG+TGG 0.716776 1.3:+66001880 MS.gene005956:CDS
TGTCAAACTGAGCCTGACTG+GGG 0.720631 1.3:+66000020 MS.gene005956:CDS
TAGTGGGAGGAAGAGTACCA+AGG 0.732119 1.3:-65998044 None:intergenic
TGGAATTCTTCATTCCAACG+TGG 0.738872 1.3:-66001368 None:intergenic
ACAAAATGCAGGAATCCCTG+GGG 0.759341 1.3:+66001852 MS.gene005956:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATAATATACTAACT+TGG - chr1.3:66001288-66001307 None:intergenic 10.0%
!! AGTTAGTATATTATTTAATT+TGG + chr1.3:66001288-66001307 MS.gene005956:intron 10.0%
!! AAAATCAAAATCAATATTAG+AGG - chr1.3:65998841-65998860 None:intergenic 15.0%
!! AATTATTTATCAGATAAGAA+GGG - chr1.3:65999040-65999059 None:intergenic 15.0%
!! GTTAAATACTAAAATAATTC+AGG - chr1.3:65999753-65999772 None:intergenic 15.0%
!! TAAATATGTGAAGAAAAATA+AGG - chr1.3:65999901-65999920 None:intergenic 15.0%
!! TAATTATTTATCAGATAAGA+AGG - chr1.3:65999041-65999060 None:intergenic 15.0%
!! TATACGCAAAATAATTATTA+GGG - chr1.3:65999672-65999691 None:intergenic 15.0%
!! TCAAACTTTGTTAATAAAAT+TGG + chr1.3:66000384-66000403 MS.gene005956:intron 15.0%
!! TTATACGCAAAATAATTATT+AGG - chr1.3:65999673-65999692 None:intergenic 15.0%
!!! ATTTTTCTTCACATATTTAT+AGG + chr1.3:65999902-65999921 MS.gene005956:intron 15.0%
!!! TATTTTATAATTTTCTGTGA+GGG - chr1.3:65998800-65998819 None:intergenic 15.0%
!!! TTATTTTATAATTTTCTGTG+AGG - chr1.3:65998801-65998820 None:intergenic 15.0%
!!! TTTTACAAATAATATATGCA+AGG + chr1.3:65999599-65999618 MS.gene005956:intron 15.0%
!!! TTTTTCTTCACATATTTATA+GGG + chr1.3:65999903-65999922 MS.gene005956:intron 15.0%
!! AAAACTGATAAAAACAAATG+TGG - chr1.3:65997510-65997529 None:intergenic 20.0%
!! AAACTGATAAAAACAAATGT+GGG - chr1.3:65997509-65997528 None:intergenic 20.0%
!! AAAGTTTCAAGAAATCTATT+AGG - chr1.3:66001532-66001551 None:intergenic 20.0%
!! AAGTATATCGATATTTGATA+AGG - chr1.3:65998534-65998553 None:intergenic 20.0%
!! ATACGCAAAATAATTATTAG+GGG - chr1.3:65999671-65999690 None:intergenic 20.0%
!! ATAGATTTCTTGAAACTTTA+AGG + chr1.3:66001533-66001552 MS.gene005956:intron 20.0%
!! ATTCAAATATGACAATCTTA+AGG - chr1.3:66000298-66000317 None:intergenic 20.0%
!! GTAAATTCTTTATTCTCATA+CGG - chr1.3:66000827-66000846 None:intergenic 20.0%
!! GTTAAATGAAATTTACAACT+AGG - chr1.3:65999200-65999219 None:intergenic 20.0%
!! TAATGAAGAGAAAAATGAAA+TGG - chr1.3:66001482-66001501 None:intergenic 20.0%
!! TAATTCATGTTGAGATAAAA+TGG + chr1.3:66001957-66001976 MS.gene005956:CDS 20.0%
!! TAGATTTCTTGAAACTTTAA+GGG + chr1.3:66001534-66001553 MS.gene005956:intron 20.0%
!! TTAAGATTGTCATATTTGAA+TGG + chr1.3:66000297-66000316 MS.gene005956:intron 20.0%
!! TTCAAATATGACAATCTTAA+GGG - chr1.3:66000297-66000316 None:intergenic 20.0%
!!! ACAAGTTTTTATTTGATATG+TGG + chr1.3:65997831-65997850 MS.gene005956:CDS 20.0%
!!! ATAAGAGTATAATAGTATAG+GGG + chr1.3:65998170-65998189 MS.gene005956:intron 20.0%
!!! ATTTATTTTACGTCAAGATT+GGG - chr1.3:65998376-65998395 None:intergenic 20.0%
!!! CATAAGAGTATAATAGTATA+GGG + chr1.3:65998169-65998188 MS.gene005956:intron 20.0%
!!! CTTTTATATTATTAGAAGTC+AGG + chr1.3:65999009-65999028 MS.gene005956:intron 20.0%
!!! TAGAAGAAATTTTATAGTCA+GGG + chr1.3:65998128-65998147 MS.gene005956:intron 20.0%
!!! TATGTTGACTTATCTAAATA+AGG - chr1.3:65999636-65999655 None:intergenic 20.0%
!!! TCATAAGAGTATAATAGTAT+AGG + chr1.3:65998168-65998187 MS.gene005956:intron 20.0%
!!! TTAGAAGAAATTTTATAGTC+AGG + chr1.3:65998127-65998146 MS.gene005956:intron 20.0%
! AAACTAACTCTTTCATAATC+AGG - chr1.3:65997710-65997729 None:intergenic 25.0%
! AATATGAAAGCTAACTACAT+AGG - chr1.3:66001722-66001741 None:intergenic 25.0%
! ACAGAGATGAAAAATAAGAT+TGG - chr1.3:66000714-66000733 None:intergenic 25.0%
! ACTGAATATTAAATGTGCAT+AGG - chr1.3:65999302-65999321 None:intergenic 25.0%
! AGAGAAGATAGTATGAAATT+CGG + chr1.3:66000938-66000957 MS.gene005956:CDS 25.0%
! AGTACCATCTAATAAATTCA+AGG + chr1.3:66001927-66001946 MS.gene005956:CDS 25.0%
! AGTTGAGATAAATTACATGA+GGG - chr1.3:66001831-66001850 None:intergenic 25.0%
! CATATCATCAATGAATCAAA+TGG - chr1.3:66000737-66000756 None:intergenic 25.0%
! CATCTAATAAATTCAAGGAA+TGG + chr1.3:66001932-66001951 MS.gene005956:CDS 25.0%
! CATGTTTATATATGAATCCT+TGG + chr1.3:65998414-65998433 MS.gene005956:intron 25.0%
! CATTCCTTGAATTTATTAGA+TGG - chr1.3:66001934-66001953 None:intergenic 25.0%
! CCAATGTATTCATCAAATAT+CGG - chr1.3:65997985-65998004 None:intergenic 25.0%
! TAGTTGAGATAAATTACATG+AGG - chr1.3:66001832-66001851 None:intergenic 25.0%
! TATAAGTTCACGTAAGTTAA+AGG + chr1.3:65998584-65998603 MS.gene005956:intron 25.0%
! TCTAGTAGTTGATTATAGAT+TGG + chr1.3:65998243-65998262 MS.gene005956:intron 25.0%
! TTGGTTGAAAGAATTTATTC+TGG + chr1.3:66001307-66001326 MS.gene005956:intron 25.0%
! TTTAATATTCAGTTCGTTGA+TGG + chr1.3:65999309-65999328 MS.gene005956:intron 25.0%
! TTTCTTCTTCAAAGTTATGT+TGG + chr1.3:66000621-66000640 MS.gene005956:intron 25.0%
!! AAAGGTAAAATTTTCTCCTT+CGG + chr1.3:66001135-66001154 MS.gene005956:intron 25.0%
!! AACCATGCAATATTTTCAAA+CGG + chr1.3:66000480-66000499 MS.gene005956:intron 25.0%
!! ACAATTTTCGGAATCATAAT+TGG - chr1.3:66001774-66001793 None:intergenic 25.0%
!! ATATTTTCAAACGGAAACTT+TGG + chr1.3:66000489-66000508 MS.gene005956:intron 25.0%
!! TTTAACTTACGTGAACTTAT+AGG - chr1.3:65998585-65998604 None:intergenic 25.0%
!! TTTTATGCAGTGACAAAAAT+TGG - chr1.3:66001204-66001223 None:intergenic 25.0%
!!! AGTTTTGGAAACAAATGAAA+AGG + chr1.3:65998671-65998690 MS.gene005956:CDS 25.0%
!!! ATATTTGAATGGATTATGGA+TGG + chr1.3:66000308-66000327 MS.gene005956:intron 25.0%
!!! ATTTACACTTGATTTGCTTA+AGG + chr1.3:66000841-66000860 MS.gene005956:CDS 25.0%
!!! CATTTATTTTACGTCAAGAT+TGG - chr1.3:65998377-65998396 None:intergenic 25.0%
!!! CTGGTTACTTTTTCAAATTT+TGG + chr1.3:66000191-66000210 MS.gene005956:intron 25.0%
!!! CTTCTAAAACAGTTGAATTT+CGG - chr1.3:65998114-65998133 None:intergenic 25.0%
!!! CTTTTGAAAATGGATTTGTT+AGG + chr1.3:65999982-66000001 MS.gene005956:CDS 25.0%
!!! GAATTTACCTTTTTTACTAG+AGG + chr1.3:66000529-66000548 MS.gene005956:intron 25.0%
!!! GTTTAGCTTCTAACAATTTT+CGG - chr1.3:66001786-66001805 None:intergenic 25.0%
!!! GTTTGTGTTTTTATTAGTGA+TGG + chr1.3:65997897-65997916 MS.gene005956:intron 25.0%
!!! TGATTTTGATTTTTCTCAGT+TGG + chr1.3:65998848-65998867 MS.gene005956:intron 25.0%
!!! TGTCATATTTGAATGGATTA+TGG + chr1.3:66000304-66000323 MS.gene005956:intron 25.0%
!!! TTTCTTTGTTTTCTGTATGT+CGG + chr1.3:66000581-66000600 MS.gene005956:intron 25.0%
!!! TTTGATTTTTTGTTTGTTGC+AGG + chr1.3:65997601-65997620 MS.gene005956:intron 25.0%
AAACATGAGCATTAGCAATT+GGG + chr1.3:65999874-65999893 MS.gene005956:intron 30.0%
AAATGAAAAGGAATTGGTCA+TGG + chr1.3:65998683-65998702 MS.gene005956:CDS 30.0%
AACCATAAAAGTAACTTCAG+TGG - chr1.3:65999549-65999568 None:intergenic 30.0%
AAGTTGCAAACCTTTATCTT+TGG + chr1.3:65999445-65999464 MS.gene005956:CDS 30.0%
ACTCCAAATAAGAAGTTTAG+AGG + chr1.3:66000881-66000900 MS.gene005956:CDS 30.0%
ACTTGATTCAGTGATCATAT+GGG + chr1.3:65997871-65997890 MS.gene005956:intron 30.0%
ATCTACTTACCACAAATAGT+GGG - chr1.3:65998063-65998082 None:intergenic 30.0%
ATTACATGTGAATGTGGTTA+GGG + chr1.3:65999951-65999970 MS.gene005956:CDS 30.0%
CAAGAAATCTATTAGGACTT+AGG - chr1.3:66001525-66001544 None:intergenic 30.0%
CAGAAAACACTAGAAGTAAA+CGG - chr1.3:66001561-66001580 None:intergenic 30.0%
CCAATTACAAGTCTATGATT+GGG + chr1.3:66000146-66000165 MS.gene005956:CDS 30.0%
CCGATATTTGATGAATACAT+TGG + chr1.3:65997982-65998001 MS.gene005956:CDS 30.0%
CTCCAAATAAGAAGTTTAGA+GGG + chr1.3:66000882-66000901 MS.gene005956:CDS 30.0%
GAAATTCAAGATTGTTGTGA+AGG + chr1.3:66000104-66000123 MS.gene005956:CDS 30.0%
GGAAACAAATGAAAAGGAAT+TGG + chr1.3:65998677-65998696 MS.gene005956:CDS 30.0%
GTAAATTCACTCCTTGAAAT+TGG - chr1.3:66000517-66000536 None:intergenic 30.0%
GTTAGACCAATTAGTGAATT+AGG + chr1.3:65997632-65997651 MS.gene005956:CDS 30.0%
TAAACATGAGCATTAGCAAT+TGG + chr1.3:65999873-65999892 MS.gene005956:intron 30.0%
TACTTGATTCAGTGATCATA+TGG + chr1.3:65997870-65997889 MS.gene005956:intron 30.0%
TATCTCAACTAACAAAATGC+AGG + chr1.3:66001841-66001860 MS.gene005956:intron 30.0%
TATTACATGTGAATGTGGTT+AGG + chr1.3:65999950-65999969 MS.gene005956:CDS 30.0%
TCAATTGATCACTAAGAACA+CGG + chr1.3:65999230-65999249 MS.gene005956:intron 30.0%
TCATGTTGAGATAAAATGGA+AGG + chr1.3:66001961-66001980 MS.gene005956:CDS 30.0%
TCCAATTACAAGTCTATGAT+TGG + chr1.3:66000145-66000164 MS.gene005956:CDS 30.0%
TGAACAAATCTATAAAGACC+AGG - chr1.3:65999130-65999149 None:intergenic 30.0%
TGATATTTGCATGTTTCATC+AGG + chr1.3:65997796-65997815 MS.gene005956:intron 30.0%
TTCATACTATCTTCTCTGAA+TGG - chr1.3:66000935-66000954 None:intergenic 30.0%
TTCCGTTTGAAAATATTGCA+TGG - chr1.3:66000485-66000504 None:intergenic 30.0%
TTGAATTTCTCATTCCATTG+AGG - chr1.3:66000093-66000112 None:intergenic 30.0%
TTGCGTATAATATTTCTCAG+TGG + chr1.3:65999683-65999702 MS.gene005956:intron 30.0%
TTTCTTCTAATTGCACTTCT+CGG + chr1.3:65998986-65999005 MS.gene005956:intron 30.0%
! AGGTTTTACTTATCTTCTTC+TGG + chr1.3:66000172-66000191 MS.gene005956:intron 30.0%
! CTTCATTTGACCATTTTCAA+AGG - chr1.3:66000345-66000364 None:intergenic 30.0%
! TGGTCTTTATAGATTTGTTC+AGG + chr1.3:65999129-65999148 MS.gene005956:CDS 30.0%
! TTATAATTTTCTGTGAGGGT+AGG - chr1.3:65998796-65998815 None:intergenic 30.0%
!! AAACTTTGGAACCAATTTCA+AGG + chr1.3:66000503-66000522 MS.gene005956:intron 30.0%
!! ACGTTGATTCATCAAGAATA+GGG - chr1.3:65999488-65999507 None:intergenic 30.0%
!! CACGTAAGTTAAAGGTATTA+AGG + chr1.3:65998592-65998611 MS.gene005956:intron 30.0%
!! CTTCATTTTGCCTTTGAAAA+TGG + chr1.3:66000332-66000351 MS.gene005956:intron 30.0%
!! TACGTTGATTCATCAAGAAT+AGG - chr1.3:65999489-65999508 None:intergenic 30.0%
!! TATCAGTTTTGTGTAATTCC+AGG - chr1.3:65999718-65999737 None:intergenic 30.0%
!!! GTTTTTTCTGAACTGAATTG+AGG + chr1.3:65997525-65997544 MS.gene005956:intron 30.0%
AAAGGTCTTAAACTTATCCG+TGG - chr1.3:65998897-65998916 None:intergenic 35.0%
AAAGTTGACGTCAACAGAAA+TGG - chr1.3:65999160-65999179 None:intergenic 35.0%
AATTGGAGAACTTGAGATTG+AGG - chr1.3:66000132-66000151 None:intergenic 35.0%
ACATGAGAAGATACACATTG+AGG + chr1.3:66001415-66001434 MS.gene005956:CDS 35.0%
AGAATTCCAGTTTATGCTAG+AGG + chr1.3:66001382-66001401 MS.gene005956:CDS 35.0%
AGGCAATTTGTGGGATAATT+AGG + chr1.3:65997947-65997966 MS.gene005956:intron 35.0%
ATAAGTTCTTGCAAAGCAAG+TGG - chr1.3:65997659-65997678 None:intergenic 35.0%
ATATGCAATTAAGTGCAGGT+TGG + chr1.3:66000752-66000771 MS.gene005956:intron 35.0%
ATGTGTATCTTCTCATGTAG+AGG - chr1.3:66001413-66001432 None:intergenic 35.0%
ATTGGAGAACTTGAGATTGA+GGG - chr1.3:66000131-66000150 None:intergenic 35.0%
ATTTGATATGTGGCCTTTCT+TGG + chr1.3:65997841-65997860 MS.gene005956:CDS 35.0%
CAATTGATCACTAAGAACAC+GGG + chr1.3:65999231-65999250 MS.gene005956:intron 35.0%
CATGGAACAAGTCATCAAAT+GGG + chr1.3:65998701-65998720 MS.gene005956:CDS 35.0%
CCAGAATTCACAACGAAAAA+GGG - chr1.3:65997559-65997578 None:intergenic 35.0%
CCCAATCATAGACTTGTAAT+TGG - chr1.3:66000149-66000168 None:intergenic 35.0%
CTATGTGCCTCTAGTAAAAA+AGG - chr1.3:66000539-66000558 None:intergenic 35.0%
GAAATCTATTAGGACTTAGG+AGG - chr1.3:66001522-66001541 None:intergenic 35.0%
GAAGATAGTATGAAATTCGG+TGG + chr1.3:66000941-66000960 MS.gene005956:CDS 35.0%
GACTTATCTAAATAAGGAGC+AGG - chr1.3:65999630-65999649 None:intergenic 35.0%
GATCTACTTACCACAAATAG+TGG - chr1.3:65998064-65998083 None:intergenic 35.0%
GATGATATGCAATTAAGTGC+AGG + chr1.3:66000748-66000767 MS.gene005956:intron 35.0%
GCAAGGTCAATACTATGTTT+GGG - chr1.3:65998734-65998753 None:intergenic 35.0%
GCAATTTGACATTATGTTCG+TGG + chr1.3:65998265-65998284 MS.gene005956:intron 35.0%
GGGAATATTACATGTGAATG+TGG + chr1.3:65999945-65999964 MS.gene005956:CDS 35.0%
GTGTCTACTTTAAACTTCCA+AGG - chr1.3:65998434-65998453 None:intergenic 35.0%
TAAGTTCTTGCAAAGCAAGT+GGG - chr1.3:65997658-65997677 None:intergenic 35.0%
TAGTTAGTTCATGAAGTGCA+GGG - chr1.3:65999393-65999412 None:intergenic 35.0%
TCATGGAACAAGTCATCAAA+TGG + chr1.3:65998700-65998719 MS.gene005956:CDS 35.0%
TGCAAGGTCAATACTATGTT+TGG - chr1.3:65998735-65998754 None:intergenic 35.0%
TGCCCTCTAAACTTCTTATT+TGG - chr1.3:66000887-66000906 None:intergenic 35.0%
TGCTACCAAGAAGATACTTA+CGG - chr1.3:65998342-65998361 None:intergenic 35.0%
TGTTGAGATAAAATGGAAGG+TGG + chr1.3:66001964-66001983 MS.gene005956:CDS 35.0%
TTCACATGTAATATTCCCAC+TGG - chr1.3:65999943-65999962 None:intergenic 35.0%
TTCTGAATCAAAGCAAGTCA+AGG + chr1.3:65997427-65997446 MS.gene005956:CDS 35.0%
TTTGTGTACAGGCAATTTGT+GGG + chr1.3:65997938-65997957 MS.gene005956:intron 35.0%
! ACGGATAAGTTTAAGACCTT+TGG + chr1.3:65998896-65998915 MS.gene005956:CDS 35.0%
! ACTAAGAACACGGGAATTTT+AGG + chr1.3:65999240-65999259 MS.gene005956:intron 35.0%
! GAAAGTTTCTTGGGTGTTTT+TGG + chr1.3:65997350-65997369 MS.gene005956:CDS 35.0%
! GAACTTCAGTTTTCTGTCAA+AGG + chr1.3:66001454-66001473 MS.gene005956:CDS 35.0%
! GGGTTCTTTGAAAGTTTCTT+GGG + chr1.3:65997341-65997360 MS.gene005956:CDS 35.0%
! TACACTTCCATGTTTTGCAA+AGG + chr1.3:65998923-65998942 MS.gene005956:CDS 35.0%
! TAGTGATGGTGATTGTTTGA+TGG + chr1.3:65997911-65997930 MS.gene005956:intron 35.0%
! TCACTAATTGGTCTAACAAC+AGG - chr1.3:65997629-65997648 None:intergenic 35.0%
! TGATAGTGTATCTGATGATG+AGG + chr1.3:66001000-66001019 MS.gene005956:CDS 35.0%
! TTCTGCAGGTATGAAAGTTT+TGG + chr1.3:65998656-65998675 MS.gene005956:intron 35.0%
! TTTTGTGTACAGGCAATTTG+TGG + chr1.3:65997937-65997956 MS.gene005956:intron 35.0%
!! ACACGGGAATTTTAGGAATT+TGG + chr1.3:65999247-65999266 MS.gene005956:intron 35.0%
!! ACTGTTTGTTGTAATTCTGC+AGG + chr1.3:65998642-65998661 MS.gene005956:intron 35.0%
!! CATTGGAAAGTATCAGATCA+AGG + chr1.3:65997999-65998018 MS.gene005956:CDS 35.0%
!! CCTTTTTCGTTGTGAATTCT+GGG + chr1.3:65997557-65997576 MS.gene005956:intron 35.0%
!! TTTGCTATTGGAATTCCTCT+TGG + chr1.3:65997374-65997393 MS.gene005956:CDS 35.0%
!! TTTTACTAGAGGCACATAGT+TGG + chr1.3:66000540-66000559 MS.gene005956:intron 35.0%
!!! GGTGTTTTTGGTTTTGCTAT+TGG + chr1.3:65997362-65997381 MS.gene005956:CDS 35.0%
!!! TGCCACTGAAGTTACTTTTA+TGG + chr1.3:65999544-65999563 MS.gene005956:intron 35.0%
!!! TTGATGGTGTTTTTGTGTAC+AGG + chr1.3:65997927-65997946 MS.gene005956:intron 35.0%
AAACCAAGAAGAAGACCAAG+AGG - chr1.3:65997392-65997411 None:intergenic 40.0%
AAAGGTTGTGGTGTCTTTGA+TGG + chr1.3:65998941-65998960 MS.gene005956:CDS 40.0%
AACAAAATGCAGGAATCCCT+GGG + chr1.3:66001851-66001870 MS.gene005956:intron 40.0%
AATGACATTCACGTCTGAGA+TGG + chr1.3:66000452-66000471 MS.gene005956:intron 40.0%
ACAAGTCTATGATTGGGACA+AGG + chr1.3:66000152-66000171 MS.gene005956:CDS 40.0%
ACCACAACCTTTGCAAAACA+TGG - chr1.3:65998933-65998952 None:intergenic 40.0%
ACGCGTTCGTTATGTTCTAA+AGG - chr1.3:65998459-65998478 None:intergenic 40.0%
AGAAAACCACTATCAAGAGG+AGG + chr1.3:66000058-66000077 MS.gene005956:CDS 40.0%
AGGCGAAAAGAAAAGGACAA+AGG + chr1.3:66001117-66001136 MS.gene005956:CDS 40.0%
AGTGGGCCTAATTCACTAAT+TGG - chr1.3:65997641-65997660 None:intergenic 40.0%
AGTTAGTTCATGAAGTGCAG+GGG - chr1.3:65999392-65999411 None:intergenic 40.0%
ATACTTACGGCACATGTCAA+TGG - chr1.3:65998329-65998348 None:intergenic 40.0%
ATAGGGATTTCCAAGATCTG+AGG - chr1.3:65999471-65999490 None:intergenic 40.0%
ATGTGCCGTAAGTATCTTCT+TGG + chr1.3:65998334-65998353 MS.gene005956:intron 40.0%
CAAATTCCTCCTCTTGATAG+TGG - chr1.3:66000067-66000086 None:intergenic 40.0%
CCCAGAATTCACAACGAAAA+AGG - chr1.3:65997560-65997579 None:intergenic 40.0%
CGAAGAAAACCACTATCAAG+AGG + chr1.3:66000055-66000074 MS.gene005956:CDS 40.0%
CTAAAGGTGATCACTGCAAA+GGG - chr1.3:66001097-66001116 None:intergenic 40.0%
CTTCATAGACAACACATGCA+AGG - chr1.3:65998751-65998770 None:intergenic 40.0%
GAAGTTTAGAGGGCAAATTG+TGG + chr1.3:66000892-66000911 MS.gene005956:CDS 40.0%
GAGTTTGATCAATTGAGCCT+TGG + chr1.3:65998027-65998046 MS.gene005956:CDS 40.0%
GCTGACATTAGATGCTTTCA+AGG - chr1.3:66000275-66000294 None:intergenic 40.0%
GGAGGAATTTGAATCCTCAA+TGG + chr1.3:66000076-66000095 MS.gene005956:CDS 40.0%
GGATATGTCAGAAAGGATAG+TGG + chr1.3:66000974-66000993 MS.gene005956:CDS 40.0%
GTAGCAATAAAGAAGCCAGT+GGG + chr1.3:65999925-65999944 MS.gene005956:CDS 40.0%
GTAGTTAGTTCATGAAGTGC+AGG - chr1.3:65999394-65999413 None:intergenic 40.0%
GTCAGAAGGATATGTCAGAA+AGG + chr1.3:66000967-66000986 MS.gene005956:CDS 40.0%
GTCTATGAAGATCAAAGTGC+AGG + chr1.3:65998761-65998780 MS.gene005956:CDS 40.0%
GTCTTTGATGGAGAAGGTAA+GGG + chr1.3:65998953-65998972 MS.gene005956:intron 40.0%
TAACAAAATGCAGGAATCCC+TGG + chr1.3:66001850-66001869 MS.gene005956:intron 40.0%
TACGTCAAGATTGGGTGATT+TGG - chr1.3:65998368-65998387 None:intergenic 40.0%
TACTTACGGCACATGTCAAT+GGG - chr1.3:65998328-65998347 None:intergenic 40.0%
TATGCCTGAAATTCCTCTCT+GGG + chr1.3:65997676-65997695 MS.gene005956:CDS 40.0%
TCAAGTACCTTCTCCAAGAA+AGG - chr1.3:65997857-65997876 None:intergenic 40.0%
TCTAAAGGTGATCACTGCAA+AGG - chr1.3:66001098-66001117 None:intergenic 40.0%
TGGAATTCTTCATTCCAACG+TGG - chr1.3:66001371-66001390 None:intergenic 40.0%
TGTATCTTCTCATGTAGAGG+AGG - chr1.3:66001410-66001429 None:intergenic 40.0%
TGTCTTTGATGGAGAAGGTA+AGG + chr1.3:65998952-65998971 MS.gene005956:intron 40.0%
TTATCTTTGGCCTCAGATCT+TGG + chr1.3:65999458-65999477 MS.gene005956:CDS 40.0%
TTATGCCTGAAATTCCTCTC+TGG + chr1.3:65997675-65997694 MS.gene005956:CDS 40.0%
TTATGTTCGTGGCTCGAATA+AGG + chr1.3:65998276-65998295 MS.gene005956:intron 40.0%
TTTCTCCTTCGGTATAGATG+TGG + chr1.3:66001146-66001165 MS.gene005956:intron 40.0%
TTTGCAGTGATCACCTTTAG+AGG + chr1.3:66001097-66001116 MS.gene005956:CDS 40.0%
TTTGCTTTCAGTTGTGGTAC+AGG + chr1.3:66001039-66001058 MS.gene005956:CDS 40.0%
! AACAGCCTCATGTGGATTTT+GGG + chr1.3:65999071-65999090 MS.gene005956:intron 40.0%
! AGATCTGAGGCCAAAGATAA+AGG - chr1.3:65999458-65999477 None:intergenic 40.0%
! ATTCCTCTTGGTCTTCTTCT+TGG + chr1.3:65997386-65997405 MS.gene005956:CDS 40.0%
! CCTTTAGAGGCGAAAAGAAA+AGG + chr1.3:66001110-66001129 MS.gene005956:CDS 40.0%
! CCTTTTCTTTTCGCCTCTAA+AGG - chr1.3:66001113-66001132 None:intergenic 40.0%
! GAAGGTTGTGTTTAGAGTCA+TGG + chr1.3:65998217-65998236 MS.gene005956:intron 40.0%
! GGGGTTCTTTGAAAGTTTCT+TGG + chr1.3:65997340-65997359 MS.gene005956:CDS 40.0%
! TACTTACCACAAATAGTGGG+AGG - chr1.3:65998060-65998079 None:intergenic 40.0%
! TCCATGTTTTGCAAAGGTTG+TGG + chr1.3:65998929-65998948 MS.gene005956:CDS 40.0%
!! CCCTTTTTCGTTGTGAATTC+TGG + chr1.3:65997556-65997575 MS.gene005956:intron 40.0%
!! GCATGTTTCATCAGGTTGAT+TGG + chr1.3:65997804-65997823 MS.gene005956:intron 40.0%
!! GGCAGTCAAGCTTTTGAAAA+TGG + chr1.3:65999972-65999991 MS.gene005956:CDS 40.0%
!!! TTGATAGTGGTTTTCTTCGC+TGG - chr1.3:66000054-66000073 None:intergenic 40.0%
ACAAAATGCAGGAATCCCTG+GGG + chr1.3:66001852-66001871 MS.gene005956:intron 45.0%
ACATTGAGGTCATGAGCAAG+AGG + chr1.3:66001429-66001448 MS.gene005956:CDS 45.0%
ACTAGGAAACTTCCATTCGC+AGG - chr1.3:65999183-65999202 None:intergenic 45.0%
ACTCTTCCTCCCACTATTTG+TGG + chr1.3:65998051-65998070 MS.gene005956:CDS 45.0%
ATGTCAAACTGAGCCTGACT+GGG + chr1.3:66000019-66000038 MS.gene005956:CDS 45.0%
CATTATGCACCACATCACTC+AGG - chr1.3:66001892-66001911 None:intergenic 45.0%
CTGAGTGATGTGGTGCATAA+TGG + chr1.3:66001890-66001909 MS.gene005956:CDS 45.0%
CTTCATTCCAACGTGGTTGA+CGG - chr1.3:66001364-66001383 None:intergenic 45.0%
GAACAAGTCATCAAATGGGC+TGG + chr1.3:65998705-65998724 MS.gene005956:CDS 45.0%
GGAGATTAACCTGAGTGATG+TGG + chr1.3:66001880-66001899 MS.gene005956:CDS 45.0%
GGTAGCAATAAAGAAGCCAG+TGG + chr1.3:65999924-65999943 MS.gene005956:CDS 45.0%
GTCAGGCTCAGTTTGACATA+TGG - chr1.3:66000018-66000037 None:intergenic 45.0%
GTTAGTTCATGAAGTGCAGG+GGG - chr1.3:65999391-65999410 None:intergenic 45.0%
GTTCAATGAACAGCCTCATG+TGG + chr1.3:65999063-65999082 MS.gene005956:intron 45.0%
GTTTAGAGGGCAAATTGTGG+TGG + chr1.3:66000895-66000914 MS.gene005956:CDS 45.0%
TAACTACTTCAGTTGCTCGC+AGG + chr1.3:65999407-65999426 MS.gene005956:intron 45.0%
TATGTCAAACTGAGCCTGAC+TGG + chr1.3:66000018-66000037 MS.gene005956:CDS 45.0%
TATGTGGCCTTTCTTGGAGA+AGG + chr1.3:65997847-65997866 MS.gene005956:CDS 45.0%
TCTCAGTGGCTAACAATTCC+TGG + chr1.3:65999697-65999716 MS.gene005956:intron 45.0%
TGTGGTGTCTTTGATGGAGA+AGG + chr1.3:65998947-65998966 MS.gene005956:CDS 45.0%
TTAGTTCATGAAGTGCAGGG+GGG - chr1.3:65999390-65999409 None:intergenic 45.0%
TTCACCCAGAGAGGAATTTC+AGG - chr1.3:65997683-65997702 None:intergenic 45.0%
TTCATTCCAACGTGGTTGAC+GGG - chr1.3:66001363-66001382 None:intergenic 45.0%
TTGAGCCACATCTATACCGA+AGG - chr1.3:66001154-66001173 None:intergenic 45.0%
! AAATTCGGTGGATCGTCAGA+AGG + chr1.3:66000953-66000972 MS.gene005956:CDS 45.0%
! AATCGAGTTGTGGAGATCGA+GGG + chr1.3:65998194-65998213 MS.gene005956:intron 45.0%
! ACATTCACGTCTGAGATGGA+CGG + chr1.3:66000456-66000475 MS.gene005956:intron 45.0%
! AGGCAGAGTGTTTGGTCAAT+AGG - chr1.3:66000255-66000274 None:intergenic 45.0%
! CATGGAAGTGTAGACACCAA+AGG - chr1.3:65998915-65998934 None:intergenic 45.0%
! GAACAGCCTCATGTGGATTT+TGG + chr1.3:65999070-65999089 MS.gene005956:intron 45.0%
! TACAAGTTTTTGCGACGCCA+CGG + chr1.3:65998877-65998896 MS.gene005956:CDS 45.0%
! TACGGCTTAAGCAGCTTTAG+AGG - chr1.3:66000809-66000828 None:intergenic 45.0%
! TCTGATGATGAGGTCCAAGA+AGG + chr1.3:66001010-66001029 MS.gene005956:CDS 45.0%
! TGCTTTCAAGGCAGAGTGTT+TGG - chr1.3:66000263-66000282 None:intergenic 45.0%
!! ACGGCTTAAGCAGCTTTAGA+GGG - chr1.3:66000808-66000827 None:intergenic 45.0%
!!! GATTTTGGGTTGGCGATATC+TGG + chr1.3:65999085-65999104 MS.gene005956:CDS 45.0%
AAAGCAAACCCGCTCCTTCT+TGG - chr1.3:66001027-66001046 None:intergenic 50.0%
AGAAAACCCGTCAACCACGT+TGG + chr1.3:66001354-66001373 MS.gene005956:CDS 50.0%
GACGTCAACTTTCCTGCGAA+TGG + chr1.3:65999168-65999187 MS.gene005956:intron 50.0%
GAGGCTCCTCTAGCATAAAC+TGG - chr1.3:66001391-66001410 None:intergenic 50.0%
GCCAACCCAAAATCCACATG+AGG - chr1.3:65999079-65999098 None:intergenic 50.0%
GCTTTCAGTTGTGGTACAGG+AGG + chr1.3:66001042-66001061 MS.gene005956:CDS 50.0%
GGGGACATCATGTCAATACC+TGG + chr1.3:65999109-65999128 MS.gene005956:CDS 50.0%
GTTAATCTCCACATGCCCCA+GGG - chr1.3:66001870-66001889 None:intergenic 50.0%
GTTGGTGCACATGACAAGCT+GGG + chr1.3:66000770-66000789 MS.gene005956:CDS 50.0%
TGATGAGGTCCAAGAAGGAG+CGG + chr1.3:66001015-66001034 MS.gene005956:CDS 50.0%
TGTCAAACTGAGCCTGACTG+GGG + chr1.3:66000020-66000039 MS.gene005956:CDS 50.0%
! AGCGGGTTTGCTTTCAGTTG+TGG + chr1.3:66001033-66001052 MS.gene005956:CDS 50.0%
! ATCGAGTTGTGGAGATCGAG+GGG + chr1.3:65998195-65998214 MS.gene005956:intron 50.0%
! CAATCGAGTTGTGGAGATCG+AGG + chr1.3:65998193-65998212 MS.gene005956:intron 50.0%
! GTATAGGGGCAATCGAGTTG+TGG + chr1.3:65998184-65998203 MS.gene005956:intron 50.0%
!! GCCTCATGTGGATTTTGGGT+TGG + chr1.3:65999075-65999094 MS.gene005956:intron 50.0%
!! TAGTGGGAGGAAGAGTACCA+AGG - chr1.3:65998047-65998066 None:intergenic 50.0%
!! TTGGGTTGGCGATATCTGGA+GGG + chr1.3:65999089-65999108 MS.gene005956:CDS 50.0%
!! TTTGGGTTGGCGATATCTGG+AGG + chr1.3:65999088-65999107 MS.gene005956:CDS 50.0%
ACAGGAGGCTGACGAAGTTG+AGG + chr1.3:66001057-66001076 MS.gene005956:CDS 55.0%
AGTTGTGGAGATCGAGGGGA+AGG + chr1.3:65998199-65998218 MS.gene005956:intron 55.0%
CAGGAGGCTGACGAAGTTGA+GGG + chr1.3:66001058-66001077 MS.gene005956:CDS 55.0%
CTGGAAGTTTGTCCCCAGTC+AGG - chr1.3:66000035-66000054 None:intergenic 55.0%
GATGAGGTCCAAGAAGGAGC+GGG + chr1.3:66001016-66001035 MS.gene005956:CDS 55.0%
GGTTAATCTCCACATGCCCC+AGG - chr1.3:66001871-66001890 None:intergenic 55.0%
TCAGGTGTCTTCACCCAGAG+AGG - chr1.3:65997692-65997711 None:intergenic 55.0%
! GGTTGGTGCACATGACAAGC+TGG + chr1.3:66000769-66000788 MS.gene005956:intron 55.0%
!! TGGGTTGGCGATATCTGGAG+GGG + chr1.3:65999090-65999109 MS.gene005956:CDS 55.0%
GCAGGAATCCCTGGGGCATG+TGG + chr1.3:66001859-66001878 MS.gene005956:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 65997338 66001991 65997338 ID=MS.gene005956
chr1.3 mRNA 65997338 66001991 65997338 ID=MS.gene005956.t1;Parent=MS.gene005956
chr1.3 exon 65997338 65997448 65997338 ID=MS.gene005956.t1.exon1;Parent=MS.gene005956.t1
chr1.3 CDS 65997338 65997448 65997338 ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1
chr1.3 exon 65997623 65997721 65997623 ID=MS.gene005956.t1.exon2;Parent=MS.gene005956.t1
chr1.3 CDS 65997623 65997721 65997623 ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1
chr1.3 exon 65997818 65997868 65997818 ID=MS.gene005956.t1.exon3;Parent=MS.gene005956.t1
chr1.3 CDS 65997818 65997868 65997818 ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1
chr1.3 exon 65997949 65998072 65997949 ID=MS.gene005956.t1.exon4;Parent=MS.gene005956.t1
chr1.3 CDS 65997949 65998072 65997949 ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1
chr1.3 exon 65998664 65998782 65998664 ID=MS.gene005956.t1.exon5;Parent=MS.gene005956.t1
chr1.3 CDS 65998664 65998782 65998664 ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1
chr1.3 exon 65998867 65998968 65998867 ID=MS.gene005956.t1.exon6;Parent=MS.gene005956.t1
chr1.3 CDS 65998867 65998968 65998867 ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1
chr1.3 exon 65999076 65999150 65999076 ID=MS.gene005956.t1.exon7;Parent=MS.gene005956.t1
chr1.3 CDS 65999076 65999150 65999076 ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1
chr1.3 exon 65999429 65999505 65999429 ID=MS.gene005956.t1.exon8;Parent=MS.gene005956.t1
chr1.3 CDS 65999429 65999505 65999429 ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1
chr1.3 exon 65999924 66000173 65999924 ID=MS.gene005956.t1.exon9;Parent=MS.gene005956.t1
chr1.3 CDS 65999924 66000173 65999924 ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1
chr1.3 exon 66000770 66001138 66000770 ID=MS.gene005956.t1.exon10;Parent=MS.gene005956.t1
chr1.3 CDS 66000770 66001138 66000770 ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1
chr1.3 exon 66001347 66001475 66001347 ID=MS.gene005956.t1.exon11;Parent=MS.gene005956.t1
chr1.3 CDS 66001347 66001475 66001347 ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1
chr1.3 exon 66001863 66001991 66001863 ID=MS.gene005956.t1.exon12;Parent=MS.gene005956.t1
chr1.3 CDS 66001863 66001991 66001863 ID=cds.MS.gene005956.t1;Parent=MS.gene005956.t1
Gene Sequence

>MS.gene005956

ATGGGGTTCTTTGAAAGTTTCTTGGGTGTTTTTGGTTTTGCTATTGGAATTCCTCTTGGTCTTCTTCTTGGTTTCTTTCTCTTTGTTTATTCTGAATCAAAGCAAGTCAAGGTTAGTGTTTTTTTTTTTTAATCTTTTTGCATGATCATTTTTTTCATTTCAATTTAACCCACATTTGTTTTTATCAGTTTTTTCTGAACTGAATTGAGGTTTAGATACCCTTTTTCGTTGTGAATTCTGGGTATGCTTCAAAATTTTATTTTTTTGATTTTTTGTTTGTTGCAGGATCCTGTTGTTAGACCAATTAGTGAATTAGGCCCACTTGCTTTGCAAGAACTTATGCCTGAAATTCCTCTCTGGGTGAAGACACCTGATTATGAAAGAGTTAGTTTTATCAATATTTTGTTTATAAGTTCTGAACTTTAAATTTTGATAATTTTACTGTGTTATTGTATTATTGATATTTGCATGTTTCATCAGGTTGATTGGTTGAACAAGTTTTTATTTGATATGTGGCCTTTCTTGGAGAAGGTACTTGATTCAGTGATCATATGGGAAAGTTTGTGTTTTTATTAGTGATGGTGATTGTTTGATGGTGTTTTTGTGTACAGGCAATTTGTGGGATAATTAGGACTACAGCACAACCGATATTTGATGAATACATTGGAAAGTATCAGATCAAGGCAATTGAGTTTGATCAATTGAGCCTTGGTACTCTTCCTCCCACTATTTGTGGTAAGTAGATCTTTTTGTGTCGTGTTTTGTCGTATAATCCGAAATTCAACTGTTTTAGAAGAAATTTTATAGTCAGGGTTATATGTCATTGTATGTCATAAGAGTATAATAGTATAGGGGCAATCGAGTTGTGGAGATCGAGGGGAAGGTTGTGTTTAGAGTCATGGAGCTCTAGTAGTTGATTATAGATTGGCAATTTGACATTATGTTCGTGGCTCGAATAAGGAAGAACATAGAGTTCTGCAATGTAATCCCATTGACATGTGCCGTAAGTATCTTCTTGGTAGCACGTCCAAATCACCCAATCTTGACGTAAAATAAATGTAAAATGATCGATCATACATGTTTATATATGAATCCTTGGAAGTTTAAAGTAGACACGTCCTTTAGAACATAACGAACGCGTGAATGATTTCTCATGAAGAAACAAGCACTTCACATAAGTTTTTCTTATCTATCCTTATCAAATATCGATATACTTTATAAAGTTCACATAACACTTTCTGCAACCTATAAGTTCACGTAAGTTAAAGGTATTAAGGTCTTGTCTTATATTTAATTTGTTTTTCACTGTTTGTTGTAATTCTGCAGGTATGAAAGTTTTGGAAACAAATGAAAAGGAATTGGTCATGGAACAAGTCATCAAATGGGCTGGCAACCCAAACATAGTATTGACCTTGCATGTGTTGTCTATGAAGATCAAAGTGCAGGTCTGTTAAGCCTACCCTCACAGAAAATTATAAAATAATAATTGTTTTTTAAGTTCCTCTAATATTGATTTTGATTTTTCTCAGTTGGTAGACTTACAAGTTTTTGCGACGCCACGGATAAGTTTAAGACCTTTGGTGTCTACACTTCCATGTTTTGCAAAGGTTGTGGTGTCTTTGATGGAGAAGGTAAGGGAAATAATCTATTTCTTCTAATTGCACTTCTCGGCTTTTATATTATTAGAAGTCAGGAATATCCCTTCTTATCTGATAAATAATTATTGTTCAATGAACAGCCTCATGTGGATTTTGGGTTGGCGATATCTGGAGGGGACATCATGTCAATACCTGGTCTTTATAGATTTGTTCAGGTACAGCCATTTCTGTTGACGTCAACTTTCCTGCGAATGGAAGTTTCCTAGTTGTAAATTTCATTTAACATCATTGAATTCAATTGATCACTAAGAACACGGGAATTTTAGGAATTTGGTGCTTTTAGTTTGTGAAAAATTTATCATTCCTATGCACATTTAATATTCAGTTCGTTGATGGATTTGTTGATTGTTTACATGTGATCTTTGTTGTTACTTTCTCGCTGTCACATTTTCCCCCCTGCACTTCATGAACTAACTACTTCAGTTGCTCGCAGGAAACAATAAAAAAACAAGTTGCAAACCTTTATCTTTGGCCTCAGATCTTGGAAATCCCTATTCTTGATGAATCAACGTAAGTCTTGTAAAATATTAAAATGATAGAGTTCTATATGCCACTGAAGTTACTTTTATGGTTTATAAGCTTTGTAAATTTTTATCTTGCATTTTTTACAAATAATATATGCAAGGACATACCTGCTCCTTATTTAGATAAGTCAACATAGTTAAGTGTGAGCCCCTAATAATTATTTTGCGTATAATATTTCTCAGTGGCTAACAATTCCTGGAATTACACAAAACTGATATCAGATGTCTTTCCTGAATTATTTTAGTATTTAACATATGATATGATCTAAAATAATGCATTTGATATTAAAATATACTGCAAATTAGTATCGTCAAAGTTTAAGTTTCACAATAACTTTATATTTGCTCTGTGTTAAACATGAGCATTAGCAATTGGGTCCTTATTTTTCTTCACATATTTATAGGGTAGCAATAAAGAAGCCAGTGGGAATATTACATGTGAATGTGGTTAGGGCAGTCAAGCTTTTGAAAATGGATTTGTTAGGAACTTCTGATCCATATGTCAAACTGAGCCTGACTGGGGACAAACTTCCAGCGAAGAAAACCACTATCAAGAGGAGGAATTTGAATCCTCAATGGAATGAGAAATTCAAGATTGTTGTGAAGGACCCTCAATCTCAAGTTCTCCAATTACAAGTCTATGATTGGGACAAGGTTTTACTTATCTTCTTCTGGTTACTTTTTCAAATTTTGGTATTAAGCACTTGTCATGAATAGTAGTAGTAGTAGTCACCTATTGACCAAACACTCTGCCTTGAAAGCATCTAATGTCAGCCCTTAAGATTGTCATATTTGAATGGATTATGGATGGTCTTCATTTTGCCTTTGAAAATGGTCAAATGAAGCTTAATTGACTACTTATTTTCAAACTTTGTTAATAAAATTGGAATCTTTATTGTTAAGTTATTTGTGTAAGACAAATAAAACTGATTAATGACATTCACGTCTGAGATGGACGGCAACCATGCAATATTTTCAAACGGAAACTTTGGAACCAATTTCAAGGAGTGAATTTACCTTTTTTACTAGAGGCACATAGTTGGTTTTTTATTTTTAAAGAATTTCTTTGTTTTCTGTATGTCGGCAGCTGCATGTTTAATTTTTCTTCTTCAAAGTTATGTTGGCATTTACGAGACAATTTATTTGTAAATTTTAGATTAGTTATTAGTATGATACAGACACAATCTTTCTCCAATCTTATTTTTCATCTCTGTCCATTTGATTCATTGATGATATGCAATTAAGTGCAGGTTGGTGCACATGACAAGCTGGGAATGCAGTTAGTCCCTCTAAAGCTGCTTAAGCCGTATGAGAATAAAGAATTTACACTTGATTTGCTTAAGGACACAAATGTCAATGAGACTCCAAATAAGAAGTTTAGAGGGCAAATTGTGGTGGACATGACTTTTGTTCCATTCAGAGAAGATAGTATGAAATTCGGTGGATCGTCAGAAGGATATGTCAGAAAGGATAGTGGAATTGATAGTGTATCTGATGATGAGGTCCAAGAAGGAGCGGGTTTGCTTTCAGTTGTGGTACAGGAGGCTGACGAAGTTGAGGGTCATCACAATAATCCCTTTGCAGTGATCACCTTTAGAGGCGAAAAGAAAAGGACAAAGGTAAAATTTTCTCCTTCGGTATAGATGTGGCTCAAAACAATACAGAATCTGTTCATTCAAAACCAATTTTTGTCACTGCATAAAATTTATATTGTTAAAAAAAATGCTAGCAATCATATTATCATTTGTATGCATGACTGAGTCAGCCAAGTTAGTATATTATTTAATTTGGTTGAAAGAATTTATTCTGGAATTTATTTTTTTGCAGATGATGAAGAAAACCCGTCAACCACGTTGGAATGAAGAATTCCAGTTTATGCTAGAGGAGCCTCCTCTACATGAGAAGATACACATTGAGGTCATGAGCAAGAGGAAGAACTTCAGTTTTCTGTCAAAGGTGCCATTTCATTTTTCTCTTCATTACAACTTATAAGTTATTTCCTCCTAAGTCCTAATAGATTTCTTGAAACTTTAAGGGTCCGTTTACTTCTAGTGTTTTCTGTTTTCATTCTCACTGATAAATAAACATCAAAGAAGACATTATGAATGTTGTTGAAATTGCATTTCAAAATAGATTGAATATTTTAAATTTTTTTGAAAAGTTTCAAAACATTGTTTTACAGTGTTTCTGAAAATGCATCCTATGTAGTTAGCTTTCATATTCTCTCTATCACAATTAAAAAAATTCATGACCAATTATGATTCCGAAAATTGTTAGAAGCTAAACAGATTGTTATTGTTAGTTCTATCCCTCATGTAATTTATCTCAACTAACAAAATGCAGGAATCCCTGGGGCATGTGGAGATTAACCTGAGTGATGTGGTGCATAATGGTCGCATTAACGACAAGTACCATCTAATAAATTCAAGGAATGGAGTAATTCATGTTGAGATAAAATGGAAGGTGGTTTAA

Protein sequence

>MS.gene005956.t1

MGFFESFLGVFGFAIGIPLGLLLGFFLFVYSESKQVKDPVVRPISELGPLALQELMPEIPLWVKTPDYERVDWLNKFLFDMWPFLEKAICGIIRTTAQPIFDEYIGKYQIKAIEFDQLSLGTLPPTICGMKVLETNEKELVMEQVIKWAGNPNIVLTLHVLSMKIKVQLVDLQVFATPRISLRPLVSTLPCFAKVVVSLMEKPHVDFGLAISGGDIMSIPGLYRFVQETIKKQVANLYLWPQILEIPILDESTVAIKKPVGILHVNVVRAVKLLKMDLLGTSDPYVKLSLTGDKLPAKKTTIKRRNLNPQWNEKFKIVVKDPQSQVLQLQVYDWDKVGAHDKLGMQLVPLKLLKPYENKEFTLDLLKDTNVNETPNKKFRGQIVVDMTFVPFREDSMKFGGSSEGYVRKDSGIDSVSDDEVQEGAGLLSVVVQEADEVEGHHNNPFAVITFRGEKKRTKMMKKTRQPRWNEEFQFMLEEPPLHEKIHIEVMSKRKNFSFLSKESLGHVEINLSDVVHNGRINDKYHLINSRNGVIHVEIKWKVV