AlfalfaGEDB | MS.gene006031

M. sativa cultivar XinJiangDaYe / MS.gene006031

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00560.36 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006031.t1	XP_024641428.1	89.5	892	81	3	1	887	34	917	1.40E-203	719.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006031.t1	O22938	38.6	329	174	8	569	883	569	883	1.9e-47	192.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006031.t1	A0A072VP05	88.1	896	90	4	1	887	34	921	3.9e-195	691.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006031	MS.gene37677	PPI
MS.gene006031	MS.gene014577	PPI
MS.gene006031	MS.gene23931	PPI
MS.gene006031	MS.gene69090	PPI
MS.gene006031	MS.gene40224	PPI
MS.gene006031	MS.gene34413	PPI
MS.gene006031	MS.gene070983	PPI
MS.gene006031	MS.gene006378	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006031.t1	MTR_1g096270	85.491	896	113	4	1	887	34	921	0.0	1489
MS.gene006031.t1	MTR_1g096260	86.783	802	97	2	88	887	1	795	0.0	1359
MS.gene006031.t1	MTR_1g096260	33.205	259	135	8	25	279	202	426	3.86e-22	102
MS.gene006031.t1	MTR_1g096260	31.716	268	165	5	28	287	157	414	5.89e-21	99.4
MS.gene006031.t1	MTR_1395s0010	82.983	523	65	1	88	610	1	499	0.0	808
MS.gene006031.t1	MTR_1395s0010	32.787	244	128	7	25	264	202	413	9.25e-20	94.4
MS.gene006031.t1	MTR_1395s0010	31.343	268	166	5	28	287	157	414	3.44e-19	92.4
MS.gene006031.t1	MTR_7g091680	36.886	835	476	18	83	883	65	882	7.98e-138	432
MS.gene006031.t1	MTR_7g091680	34.211	266	166	5	28	287	227	489	6.79e-29	124
MS.gene006031.t1	MTR_1g047670	34.228	894	520	21	32	886	225	1089	3.51e-123	400

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006031.t1	AT1G34420	50.429	932	398	15	1	883	47	963	0.0	791
MS.gene006031.t1	AT2G41820	36.135	916	483	22	8	887	38	887	1.03e-138	435
MS.gene006031.t1	AT5G63930	34.598	896	502	19	52	887	147	1018	1.04e-123	399
MS.gene006031.t1	AT5G63930	36.000	450	271	8	63	500	14	458	6.43e-61	224
MS.gene006031.t1	AT5G63930	38.202	356	185	8	35	384	301	627	2.17e-42	168
MS.gene006031.t1	AT5G63930	34.410	898	501	20	52	887	211	1082	2.90e-120	392
MS.gene006031.t1	AT5G63930	34.387	506	288	11	9	500	47	522	2.51e-63	232
MS.gene006031.t1	AT5G63930	38.202	356	185	8	35	384	365	691	2.30e-42	168
MS.gene006031.t1	AT1G17230	34.133	917	507	22	36	887	192	1076	4.92e-120	391
MS.gene006031.t1	AT1G17230	33.245	379	241	7	35	408	359	730	2.60e-39	158

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Find 189 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAATGCTTGAAATTC+TGG	0.159792	1.3:-66891933	MS.gene006031:CDS
AAACTAGGAGAAATATTTCT+AGG	0.326214	1.3:+66894056	None:intergenic
AAACTCCCGGTACTCTTTGA+AGG	0.467601	1.3:+66892553	None:intergenic
AAACTTATGGAAGTCCAACT+TGG	0.511418	1.3:-66893606	MS.gene006031:CDS
AAATTACTCTGGATGACCTG+AGG	0.702437	1.3:+66893102	None:intergenic
AACTGAGCTCTATCCCAGAT+GGG	0.602093	1.3:-66894721	MS.gene006031:CDS
AAGACTCAAAGTAATCAATT+TGG	0.305653	1.3:+66894316	None:intergenic
AAGATCTTCTGGAATGGACT+CGG	0.531617	1.3:+66894139	None:intergenic
AAGATTGGAGAGAGTGTTCA+TGG	0.414715	1.3:+66894847	None:intergenic
AAGGAGAAGTATTGGACCAG+AGG	0.647975	1.3:+66892657	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAAATGCTTGAAATTC+TGG	-	chr1.3:66894759-66894778	MS.gene006031:CDS	30.0%
AATCTTAATGACAGATGAAC+TGG	+	chr1.3:66891935-66891954	None:intergenic	30.0%
AATTTATCAAGACTACTCAC+TGG	+	chr1.3:66893791-66893810	None:intergenic	30.0%
AGAAATCAATGTTTGATCTG+TGG	+	chr1.3:66893634-66893653	None:intergenic	30.0%
AGACTGTTTGAAAGAACTTA+TGG	-	chr1.3:66894251-66894270	MS.gene006031:CDS	30.0%
ATATTTCTCCTAGTTTAGTC+AGG	-	chr1.3:66892643-66892662	MS.gene006031:CDS	30.0%
ATGAACACATATATGATAGG+TGG	-	chr1.3:66894389-66894408	MS.gene006031:CDS	30.0%
CTATCAAACAATCAACTATC+AGG	-	chr1.3:66893314-66893333	MS.gene006031:CDS	30.0%
CTTCAAATGAACAAGCTTAA+TGG	-	chr1.3:66892894-66892913	MS.gene006031:CDS	30.0%
CTTGGAGAAAATAAGTTAAG+TGG	-	chr1.3:66893104-66893123	MS.gene006031:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	66891847	66894867	66891847	ID=MS.gene006031
chr1.3	mRNA	66891847	66894867	66891847	ID=MS.gene006031.t1;Parent=MS.gene006031
chr1.3	exon	66892491	66894867	66892491	ID=MS.gene006031.t1.exon1;Parent=MS.gene006031.t1
chr1.3	CDS	66892491	66894867	66892491	ID=cds.MS.gene006031.t1;Parent=MS.gene006031.t1
chr1.3	exon	66891847	66892133	66891847	ID=MS.gene006031.t1.exon2;Parent=MS.gene006031.t1
chr1.3	CDS	66891847	66892133	66891847	ID=cds.MS.gene006031.t1;Parent=MS.gene006031.t1

Gene Sequence

>MS.gene006031

ATGAACACTCTCTCCAATCTTCTTAACATCCCTGGTTGGAATACAACCAATCCATGTTCATGGAAAGGTGTCACTTGTGACCTTACCAGTTCATCTGTCATTAAGATTGATGTTTCTAAGAACCAACTGAGCTCTATCCCAGATGGGTTTATTTCTGCATGTGGAAAAATTGAGAGTTTAAAGCTTTTAAATTTCAGTGGAAATGTGTTAAGTGGTGTTTTGCCTACTTTTCATGGTTTTCCTAAACTGGAAACACTTGACATGTCTTTCAATAATTTGAGTGGAAGCATTGATATGCAGTTAGATGGAATGGTTAGTCTCAAATATCTTAATCTCAATAATAATAACTTCACTGGGAAAATTCCTACTAACCTTGGAAGCTCCATGGTTTTGGAGCAGCTTGTGCTTTCAAACAATGGTTTTCAAGGAACTATCCCTGATCAACTGTTGAGTTACAAAAACTTGACACTGATTGATCTTCAGGTAAATAAGCTTTCCGGGTCTATACCTTTAGATATTGGAAATCTTTCCAAATTGATTACTTTGAGTCTTTCCTCTAATGGTATTGGTGGCAAAATCCCAATGTCACTCGTGAATATCACAACATTAGTAAGATTTGCAGCTAATCTAAATAATTTTACTGGTGCTGTTCCTCCTGGAATTACAAAATTTCTTCAGAGTTTGGATCTTAGTTATAATAATTTATCCGAGTCCATTCCAGAAGATCTTTTATCTCCATCACAGATAGTGCTAATAGATTTGTCCAATAACATGTTAAAAGGGCCTGTACCTAGAAATATTTCTCCTAGTTTAGTCAGGTTGAGATTGGGGGGAAACTTGTTGACAGGAGAGGTTCCTTCAGGTACTTGCGGTGAAGCCGGACATGGTTTGACATATATGGAGCTGGAAAAAAATAATTTGACAGGTTTGATACCTCCTGGATTAAGTTCTTGTAAGAAATTGGCCTTGTTGAATTTGGCTGATAACCAATTGACTGGTGCATTGCCACCAGAACTTGGTAATCTTAGCAATCTTCAAGTCCTTAAGCTTCAAATGAACAAGCTTAATGGTACTATTCCAATTCAAATTTCACAACTGCAACAGTTGTCTACCCTGAATTTGAGCCTGAATTCTCTGCATGGACCAATTCCATCTGAGATGTCAAACAGCCTTGTACTTCTTGACTTGCAAGGGAACAATCTCAACGGGTCTATACCGTCGTCCATTGGAAACTTGGAAAAACTTATGGAAGTCCAACTTGGAGAAAATAAGTTAAGTGGTGATATTCCAAGAATGCCTTTGAGTCTACAGATTGCATTGAATCTCAGCAGCAATCAGTTCAGTGGAGCTATTCCTAGTAGTTTTGCTGATTTGGTTAACCTAGAAATTTTGGACCTCTCAAATAACAACTTCTCTGGTGCAATTCCTCAGTCTCTAACTAAAATGGCGGCATTGACACAGTTGCAACTATCAAACAATCAACTATCAGGTGACCTTCCATTATTTGGTTCATACGTTAAAATTGATACAGGAGGAAACAGTGTCAGAAACAATATTAATGTCTCACCCAACAATTTTCGAAGAGCAGGAAAGAAAGGGAAATCTGTTGTTACCGCTGTTGTTTCTGCTATTGCTGGTTTTGTGGTTGGCATGGTCACCCTTCTGGTTGTATTGATGTCGCGACACTGTTGCAGAGTCAATGGTGAACAAGTACAGTCAAGTGAAAGTGAAAATCTTGACCTTCCTCAGGTCATCCAGAGTAATTTGTTAACACCAAATGGAATCCACAGATCAAACATTGATTTCTCCAAGGTCGTGGAAGTTGTTGCCAAAACGTCAAACATAACTTTAAAAACCAAGTTTTCAACTTACTATAAGGCTGTTATGCCATCTGGTTCAATCTATTTCGCCAAGAAGCTGAACTGGTGTGACAAGGTATTTCCAGTGAGTAGTCTTGATAAATTTGGGAAAGAGCTAGATGCATTGGCAAAGTTGAACAATTCAAATGTGATGATTCCTCTAGGCTATATTGTGTCCACTAACAATGCTTATATATTATACGAGTTTCTCTCGAACGGCTCTCTCTTCGATGTGCTTCATGGACGCATGAAAAACTCTTTAGATTGGGCTAGCAGATATAGTATAGCTGTTGGTGTGGCTCAAGGCCTAGATTTTCTGCATGGTTGTGCCTCTGGTCCAATACTTCTCCTTGATCTATCAAGTAAAAGTATTATGCTGAAATCGTTTGAGGAGCCTCTAGTTGGTGATATTGAACATTGCAAGGTGATTGATCCTTCAAAGAGTACCGGGAGTTTTTGTGCTGTTGCTGGTTCTGATGGCTACATTTCTCCAGGTCAAAAACTCTTGTTTCTTTCCGGTTAGTCTAAATTTATAAGCATCTGTGAGACTGTTTGAAAGAACTTATGGAAACAACGTATGACATGTCCATAAATTATTTTTATCTTATTTCCATAAGCTCTCCAACTTATAGCTTATATGAAATCAGTTTGACTTTATTATATATTCTATAAATAGCTTATACATGAACACATATATGATAGGTGGTTATGCTATTAGTGTATACTTAAATTGATCAAAACAGGGCCTAATAAAATTACTAAGTTTGTATGTGTACTGGAAATCGCTTATATTTGCTTTACAAACACAAACTAAGCTAAAAATAAATCACATTAGAGTTCGAAGATCTAAATTATTTTATTTGTTGATTTAGCAGAGTATGCGTGCACAATGAGAGAGAATGTGTATAGCTTTGGGGTGATTCTACTGGAATTGCTGACTGGAAAACCTGCAGTGACTAAGGGAGCTGAATTGGTAAAGTGGGTTTTGCGTAATTCAAGAAATCAAGATTACATTCTTGATTTTAATGTTAGCAAAACATCACAATTTGTTAGAAACCAAATGCTTGAAATTCTGGAGATTGCTCTTGTTTGTGTTAGCACATCCCCTGATGCAAGACCAAAGATGAAGACTGTGCTAAGAATGTTGCTGAATGCCAGATAA

Protein sequence

>MS.gene006031.t1

MNTLSNLLNIPGWNTTNPCSWKGVTCDLTSSSVIKIDVSKNQLSSIPDGFISACGKIESLKLLNFSGNVLSGVLPTFHGFPKLETLDMSFNNLSGSIDMQLDGMVSLKYLNLNNNNFTGKIPTNLGSSMVLEQLVLSNNGFQGTIPDQLLSYKNLTLIDLQVNKLSGSIPLDIGNLSKLITLSLSSNGIGGKIPMSLVNITTLVRFAANLNNFTGAVPPGITKFLQSLDLSYNNLSESIPEDLLSPSQIVLIDLSNNMLKGPVPRNISPSLVRLRLGGNLLTGEVPSGTCGEAGHGLTYMELEKNNLTGLIPPGLSSCKKLALLNLADNQLTGALPPELGNLSNLQVLKLQMNKLNGTIPIQISQLQQLSTLNLSLNSLHGPIPSEMSNSLVLLDLQGNNLNGSIPSSIGNLEKLMEVQLGENKLSGDIPRMPLSLQIALNLSSNQFSGAIPSSFADLVNLEILDLSNNNFSGAIPQSLTKMAALTQLQLSNNQLSGDLPLFGSYVKIDTGGNSVRNNINVSPNNFRRAGKKGKSVVTAVVSAIAGFVVGMVTLLVVLMSRHCCRVNGEQVQSSESENLDLPQVIQSNLLTPNGIHRSNIDFSKVVEVVAKTSNITLKTKFSTYYKAVMPSGSIYFAKKLNWCDKVFPVSSLDKFGKELDALAKLNNSNVMIPLGYIVSTNNAYILYEFLSNGSLFDVLHGRMKNSLDWASRYSIAVGVAQGLDFLHGCASGPILLLDLSSKSIMLKSFEEPLVGDIEHCKVIDPSKSTGSFCAVAGSDGYISPGQKLLFLSEYACTMRENVYSFGVILLELLTGKPAVTKGAELVKWVLRNSRNQDYILDFNVSKTSQFVRNQMLEILEIALVCVSTSPDARPKMKTVLRMLLNAR