Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006273.t1 | XP_003592260.2 | 95 | 457 | 22 | 1 | 1 | 457 | 1 | 456 | 3.00E-221 | 777.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006273.t1 | Q5XVA8 | 40.5 | 301 | 151 | 6 | 39 | 333 | 79 | 357 | 2.3e-36 | 154.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006273.t1 | G7IES8 | 95.0 | 457 | 22 | 1 | 1 | 457 | 1 | 456 | 2.1e-221 | 777.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065578 | MS.gene006273 | PPI |
| MS.gene006273 | MS.gene56252 | PPI |
| MS.gene009450 | MS.gene006273 | PPI |
| MS.gene063424 | MS.gene006273 | PPI |
| MS.gene006273 | MS.gene51623 | PPI |
| MS.gene059441 | MS.gene006273 | PPI |
| MS.gene84379 | MS.gene006273 | PPI |
| MS.gene059442 | MS.gene006273 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006273.t1 | MTR_1g100880 | 94.967 | 457 | 22 | 1 | 1 | 457 | 1 | 456 | 0.0 | 854 |
| MS.gene006273.t1 | MTR_8g089685 | 35.258 | 329 | 197 | 4 | 103 | 427 | 313 | 629 | 4.56e-35 | 138 |
| MS.gene006273.t1 | MTR_8g089685 | 30.043 | 233 | 147 | 4 | 103 | 331 | 313 | 533 | 1.21e-16 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006273.t1 | AT3G49055 | 49.191 | 309 | 145 | 4 | 125 | 432 | 156 | 453 | 4.02e-72 | 236 |
| MS.gene006273.t1 | AT1G24560 | 36.826 | 334 | 194 | 7 | 125 | 453 | 351 | 672 | 4.46e-34 | 135 |
Find 88 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAAAGGATTGCATTTC+TGG | 0.079330 | 1.1:-72153551 | None:intergenic |
| TCAGAGGTGTAGGGTGAATT+TGG | 0.200366 | 1.1:-72150793 | None:intergenic |
| CATTTCTGGTATCATCCTTT+TGG | 0.244152 | 1.1:-72153537 | None:intergenic |
| CACTCAATTGAGAAGATCTT+TGG | 0.250215 | 1.1:+72152235 | MS.gene006273:CDS |
| TGAATCCTTCATTTCAATAA+AGG | 0.255904 | 1.1:+72150966 | MS.gene006273:CDS |
| TAAAGGGACATGATCATAAA+AGG | 0.299279 | 1.1:+72151289 | MS.gene006273:CDS |
| TTATAAGGAGTTAAGGAAAA+AGG | 0.301417 | 1.1:+72151158 | MS.gene006273:CDS |
| CTTGCTTAGGGTTGCTTTGT+TGG | 0.306411 | 1.1:+72151242 | MS.gene006273:CDS |
| GGGATATTAATAACTTGCTT+AGG | 0.323686 | 1.1:+72151229 | MS.gene006273:CDS |
| AACAAAGGTGGAAAATTATA+AGG | 0.327278 | 1.1:+72151143 | MS.gene006273:CDS |
| TGAATCAACGGTGTTGTTAT+TGG | 0.327284 | 1.1:+72151080 | MS.gene006273:CDS |
| CTCTGATTCCTCTAGTTGTC+TGG | 0.328896 | 1.1:-72153408 | None:intergenic |
| CAAGTTTAACTGAAGAGAAT+AGG | 0.334464 | 1.1:+72151208 | MS.gene006273:CDS |
| GGCATTGGAGAAGAAAATAA+AGG | 0.348101 | 1.1:+72151272 | MS.gene006273:CDS |
| CTCAAAACAGTTTCAAAGTA+AGG | 0.362902 | 1.1:-72150850 | None:intergenic |
| GATTGAAGAGCGTGACAAAA+TGG | 0.368630 | 1.1:+72152886 | MS.gene006273:CDS |
| TTCTCAATTGAGTGATTTCA+AGG | 0.377950 | 1.1:-72152226 | None:intergenic |
| AATATTGCTACCTCTAGAAT+TGG | 0.380419 | 1.1:+72153509 | MS.gene006273:CDS |
| TGAAGTGGAAGTTGTTAGTT+TGG | 0.382314 | 1.1:+72151440 | MS.gene006273:CDS |
| GGAATCCTTTATTGAAATGA+AGG | 0.382840 | 1.1:-72150971 | None:intergenic |
| TGGAAAATTATAAGGAGTTA+AGG | 0.385060 | 1.1:+72151151 | MS.gene006273:CDS |
| AGAGAGTTTAGAGGGAGAAA+AGG | 0.399871 | 1.1:+72151008 | MS.gene006273:CDS |
| GCAGAAAACAAAGGGTGCTT+TGG | 0.404761 | 1.1:+72153250 | MS.gene006273:CDS |
| GAAGATCTTTGGAAGAATCT+AGG | 0.411043 | 1.1:+72152246 | MS.gene006273:CDS |
| CAGAAGAAGAGGTAGCTAGA+TGG | 0.415692 | 1.1:+72152822 | MS.gene006273:CDS |
| CTTTATCTGAATGAAGACTA+TGG | 0.417754 | 1.1:-72150825 | None:intergenic |
| ATGGAAGGAAGCTTGTGAAT+TGG | 0.425674 | 1.1:+72152841 | MS.gene006273:CDS |
| TAGAGTAAAAGAGAGTTTAG+AGG | 0.428291 | 1.1:+72150999 | MS.gene006273:CDS |
| ATTGTTGAGTTTGTACTGAT+TGG | 0.430495 | 1.1:-72150770 | None:intergenic |
| GGTTGCTTTGTTGGAGAAAG+AGG | 0.435951 | 1.1:+72151251 | MS.gene006273:CDS |
| AGCTTGTGAATTGGAAGTTA+AGG | 0.438841 | 1.1:+72152850 | MS.gene006273:CDS |
| AGTTTGGATTGCAGAAAGTT+GGG | 0.445362 | 1.1:+72151334 | MS.gene006273:CDS |
| AGTTTGTACTGATTGGAAGA+TGG | 0.446181 | 1.1:-72150763 | None:intergenic |
| GGATTGCAGAAAGTTGGGTT+TGG | 0.447142 | 1.1:+72151339 | MS.gene006273:CDS |
| AACGGTGTTGTTATTGGAAG+AGG | 0.451228 | 1.1:+72151086 | MS.gene006273:CDS |
| AACTCAGCAAACTGCAAAAG+TGG | 0.459010 | 1.1:-72151315 | None:intergenic |
| GGATATTAATAACTTGCTTA+GGG | 0.460080 | 1.1:+72151230 | MS.gene006273:CDS |
| AAGTTTAACTGAAGAGAATA+GGG | 0.463002 | 1.1:+72151209 | MS.gene006273:CDS |
| ATACACATTTCATTGAAGAA+AGG | 0.468708 | 1.1:-72153564 | None:intergenic |
| TTTGTTTCTCTGTGAGACAC+TGG | 0.481946 | 1.1:-72152602 | None:intergenic |
| CTGATTGGAAGATGGGTGAT+AGG | 0.487601 | 1.1:-72150755 | None:intergenic |
| AAGAGGCAAGGTTAATATCA+AGG | 0.488668 | 1.1:+72151103 | MS.gene006273:CDS |
| GAGTTTGGATTGCAGAAAGT+TGG | 0.488938 | 1.1:+72151333 | MS.gene006273:CDS |
| AGAAGATAGAGAGAGAATCT+TGG | 0.496215 | 1.1:+72152665 | MS.gene006273:CDS |
| TGAACTTCGTCGGCAGATAG+AGG | 0.497803 | 1.1:+72153379 | MS.gene006273:CDS |
| CATTATCCTTTCCACTGTTG+AGG | 0.498340 | 1.1:-72152192 | None:intergenic |
| TTTGGATTCATGATGGGAGG+TGG | 0.499288 | 1.1:+72151357 | MS.gene006273:CDS |
| AGTTGGGTTTGGATTCATGA+TGG | 0.502092 | 1.1:+72151350 | MS.gene006273:CDS |
| GTTTGTACTGATTGGAAGAT+GGG | 0.507092 | 1.1:-72150762 | None:intergenic |
| TGGTAATAATGTGCAATCAA+TGG | 0.508772 | 1.1:+72151377 | MS.gene006273:CDS |
| GCATTGGAGAAGAAAATAAA+GGG | 0.508904 | 1.1:+72151273 | MS.gene006273:CDS |
| AGAGTAAAAGAGAGTTTAGA+GGG | 0.509789 | 1.1:+72151000 | MS.gene006273:CDS |
| AATGGCTGCAATAGCTGCAC+AGG | 0.512276 | 1.1:+72153313 | MS.gene006273:CDS |
| TGTGAATTGGAAGTTAAGGC+TGG | 0.515864 | 1.1:+72152854 | MS.gene006273:CDS |
| AATCAAAGAAACAGAAGAAG+AGG | 0.521307 | 1.1:+72152811 | MS.gene006273:CDS |
| CTAGAATTGGAAATGCCAAA+AGG | 0.523851 | 1.1:+72153522 | MS.gene006273:CDS |
| GGGTTTGGATTCATGATGGG+AGG | 0.525505 | 1.1:+72151354 | MS.gene006273:CDS |
| GTTGGGTTTGGATTCATGAT+GGG | 0.528280 | 1.1:+72151351 | MS.gene006273:CDS |
| TTTGTTGGAGAAAGAGGCAT+TGG | 0.529077 | 1.1:+72151257 | MS.gene006273:CDS |
| GTCAGAAACTTCAGAGGTGT+AGG | 0.536212 | 1.1:-72150803 | None:intergenic |
| CAAGAACTGCAGAAAACAAA+GGG | 0.555928 | 1.1:+72153242 | MS.gene006273:CDS |
| AGATAGCAGTGAGTGTGAAG+TGG | 0.556533 | 1.1:+72151425 | MS.gene006273:CDS |
| AATATCAAGGCTTGCAACTG+AGG | 0.558159 | 1.1:+72151116 | MS.gene006273:CDS |
| ATCAAGGCTTGCAACTGAGG+TGG | 0.576214 | 1.1:+72151119 | MS.gene006273:CDS |
| AGAAGAGGTAGCTAGATGGA+AGG | 0.576787 | 1.1:+72152826 | MS.gene006273:CDS |
| TGTCAGAGAAATAGTTTGTG+AGG | 0.577043 | 1.1:+72151041 | MS.gene006273:CDS |
| TGTTGTTATTGGAAGAGGCA+AGG | 0.579247 | 1.1:+72151091 | MS.gene006273:CDS |
| AGAAAACAAACTCTACATCA+AGG | 0.582148 | 1.1:+72152638 | MS.gene006273:CDS |
| CCAAGGCCTCAACAGTGGAA+AGG | 0.591423 | 1.1:+72152186 | MS.gene006273:intron |
| GTAGAGGAGTTGAACTTCGT+CGG | 0.592524 | 1.1:+72153369 | MS.gene006273:CDS |
| TGCAACTGAGGTGGAAACAA+AGG | 0.599427 | 1.1:+72151128 | MS.gene006273:CDS |
| TTTGGCATTTCCAATTCTAG+AGG | 0.603440 | 1.1:-72153519 | None:intergenic |
| GGAACTAACCAGACAACTAG+AGG | 0.607450 | 1.1:+72153400 | MS.gene006273:CDS |
| TGTATTGGATGGAAATGAAG+TGG | 0.608267 | 1.1:+72150885 | MS.gene006273:CDS |
| GTTTCTCTGTGAGACACTGG+AGG | 0.609222 | 1.1:-72152599 | None:intergenic |
| TCAGAAACTTCAGAGGTGTA+GGG | 0.615156 | 1.1:-72150802 | None:intergenic |
| AGAGTTAAGTGATGAATCAA+CGG | 0.616622 | 1.1:+72151068 | MS.gene006273:CDS |
| GGTGCTTTGGACATATCCAA+TGG | 0.618935 | 1.1:+72153263 | MS.gene006273:CDS |
| ATCAATGGATGGTACTTCTG+AGG | 0.620756 | 1.1:+72151392 | MS.gene006273:CDS |
| AAGTGAGTCGACGTATATGT+TGG | 0.622198 | 1.1:+72153456 | MS.gene006273:CDS |
| AATAATGTGCAATCAATGGA+TGG | 0.631660 | 1.1:+72151381 | MS.gene006273:CDS |
| ACAAGAACTGCAGAAAACAA+AGG | 0.632471 | 1.1:+72153241 | MS.gene006273:CDS |
| TTGAAGCTAGCTGATAGTAG+AGG | 0.633294 | 1.1:+72153353 | MS.gene006273:CDS |
| GTCGACGTATATGTTGGCCA+TGG | 0.640311 | 1.1:+72153462 | MS.gene006273:CDS |
| ACTCAAAGAAGAGCTAGCAA+TGG | 0.653656 | 1.1:+72153295 | MS.gene006273:CDS |
| AACTGAGGTGGAAACAAAGG+TGG | 0.664974 | 1.1:+72151131 | MS.gene006273:CDS |
| ACTATGGTCAGAAACTTCAG+AGG | 0.696124 | 1.1:-72150809 | None:intergenic |
| CTGCACAGGAAGCAGCAGAG+AGG | 0.705056 | 1.1:+72153327 | MS.gene006273:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGAATATATAAACAA+TGG | - | chr1.1:72152996-72153015 | None:intergenic | 10.0% |
| !! | AATATCATAACATTACTTAA+TGG | + | chr1.1:72151899-72151918 | MS.gene006273:intron | 15.0% |
| !! | AGATATAGATTATAGTTTAA+CGG | - | chr1.1:72153179-72153198 | None:intergenic | 15.0% |
| !!! | AAGTATTCTTTTTATAGATA+TGG | - | chr1.1:72152935-72152954 | None:intergenic | 15.0% |
| !!! | ATAATTTGTATATAGAACTA+AGG | - | chr1.1:72151480-72151499 | None:intergenic | 15.0% |
| !!! | TAGTTCTATATACAAATTAT+AGG | + | chr1.1:72151480-72151499 | MS.gene006273:intron | 15.0% |
| !! | AAAATAATATCACTATGTGA+TGG | - | chr1.1:72152311-72152330 | None:intergenic | 20.0% |
| !! | AAGTTAGTTAGTTAGTTATT+TGG | + | chr1.1:72152012-72152031 | MS.gene006273:intron | 20.0% |
| !! | TAACGTAATGAGTAAAAAAA+TGG | + | chr1.1:72151719-72151738 | MS.gene006273:intron | 20.0% |
| !! | TGAATATATAAACAATGGAA+AGG | - | chr1.1:72152991-72153010 | None:intergenic | 20.0% |
| !!! | TCTTATATATGTTACTTATG+TGG | - | chr1.1:72151683-72151702 | None:intergenic | 20.0% |
| !!! | TGACAGTTATTTTTAAAAAG+CGG | + | chr1.1:72153090-72153109 | MS.gene006273:intron | 20.0% |
| !!! | TTAGTCTATTCTGAAATTTA+TGG | + | chr1.1:72152156-72152175 | MS.gene006273:intron | 20.0% |
| !!! | TTTTTTTGTCTAACTGTTAA+AGG | + | chr1.1:72152769-72152788 | MS.gene006273:intron | 20.0% |
| ! | AAAACCAAACTAAATGAACT+CGG | - | chr1.1:72152533-72152552 | None:intergenic | 25.0% |
| ! | AACAAAGGTGGAAAATTATA+AGG | + | chr1.1:72151143-72151162 | MS.gene006273:CDS | 25.0% |
| ! | AAGATAAAGCTCAAATTCAA+AGG | - | chr1.1:72151546-72151565 | None:intergenic | 25.0% |
| ! | AAGTTTAACTGAAGAGAATA+GGG | + | chr1.1:72151209-72151228 | MS.gene006273:CDS | 25.0% |
| ! | ATAGTATGATATGTTCTTAC+TGG | + | chr1.1:72153133-72153152 | MS.gene006273:intron | 25.0% |
| ! | ATCACGTACATTTAACAAAA+GGG | + | chr1.1:72151851-72151870 | MS.gene006273:intron | 25.0% |
| ! | GAAAAAAGAGAGAAACAAAA+AGG | + | chr1.1:72151876-72151895 | MS.gene006273:intron | 25.0% |
| ! | GTCATGTTTATTGATCAAAT+AGG | - | chr1.1:72152706-72152725 | None:intergenic | 25.0% |
| ! | GTTACTTATGTGGTATAAAT+GGG | - | chr1.1:72151673-72151692 | None:intergenic | 25.0% |
| ! | TAATGTTTGAATGTTCCATT+AGG | + | chr1.1:72153205-72153224 | MS.gene006273:intron | 25.0% |
| ! | TATCACGTACATTTAACAAA+AGG | + | chr1.1:72151850-72151869 | MS.gene006273:intron | 25.0% |
| ! | TGAATCCTTCATTTCAATAA+AGG | + | chr1.1:72150966-72150985 | MS.gene006273:CDS | 25.0% |
| ! | TGGAAAATTATAAGGAGTTA+AGG | + | chr1.1:72151151-72151170 | MS.gene006273:CDS | 25.0% |
| ! | TTAAAAAGCGGTGATAATAT+AGG | + | chr1.1:72153102-72153121 | MS.gene006273:intron | 25.0% |
| ! | TTACTTATGTGGTATAAATG+GGG | - | chr1.1:72151672-72151691 | None:intergenic | 25.0% |
| ! | TTATAAGGAGTTAAGGAAAA+AGG | + | chr1.1:72151158-72151177 | MS.gene006273:CDS | 25.0% |
| ! | TTGAGAAAGAAGAGAAAAAT+GGG | + | chr1.1:72150926-72150945 | MS.gene006273:CDS | 25.0% |
| !! | ATTTTTGTAGTTGAGAAAAG+GGG | + | chr1.1:72153010-72153029 | MS.gene006273:intron | 25.0% |
| !! | CATTTTTGTAGTTGAGAAAA+GGG | + | chr1.1:72153009-72153028 | MS.gene006273:intron | 25.0% |
| !! | CTTTTTATAGATATGGCAAA+AGG | - | chr1.1:72152928-72152947 | None:intergenic | 25.0% |
| !! | TGTTACTTATGTGGTATAAA+TGG | - | chr1.1:72151674-72151693 | None:intergenic | 25.0% |
| !! | TTTGAGTCTTAATTTTCCAT+TGG | - | chr1.1:72153282-72153301 | None:intergenic | 25.0% |
| !!! | AAATTTATGGTCATTTTCCA+AGG | + | chr1.1:72152169-72152188 | MS.gene006273:intron | 25.0% |
| !!! | GGATATTAATAACTTGCTTA+GGG | + | chr1.1:72151230-72151249 | MS.gene006273:CDS | 25.0% |
| !!! | TCATTTTTGTAGTTGAGAAA+AGG | + | chr1.1:72153008-72153027 | MS.gene006273:intron | 25.0% |
| AATAATGTGCAATCAATGGA+TGG | + | chr1.1:72151381-72151400 | MS.gene006273:CDS | 30.0% | |
| AATCAAAGAAACAGAAGAAG+AGG | + | chr1.1:72152811-72152830 | MS.gene006273:CDS | 30.0% | |
| AGAAAAATGGGATGATGTTA+AGG | + | chr1.1:72150938-72150957 | MS.gene006273:CDS | 30.0% | |
| AGAAAACAAACTCTACATCA+AGG | + | chr1.1:72152638-72152657 | MS.gene006273:CDS | 30.0% | |
| AGAGTAAAAGAGAGTTTAGA+GGG | + | chr1.1:72151000-72151019 | MS.gene006273:CDS | 30.0% | |
| AGAGTTAAGTGATGAATCAA+CGG | + | chr1.1:72151068-72151087 | MS.gene006273:CDS | 30.0% | |
| ATCATAAGAGAACACTTTCT+TGG | - | chr1.1:72151831-72151850 | None:intergenic | 30.0% | |
| ATTATTATGAACTTCATGCC+AGG | + | chr1.1:72152562-72152581 | MS.gene006273:intron | 30.0% | |
| CAAGTTTAACTGAAGAGAAT+AGG | + | chr1.1:72151208-72151227 | MS.gene006273:CDS | 30.0% | |
| CTAGAACTCAATCTAAAAAC+TGG | - | chr1.1:72153488-72153507 | None:intergenic | 30.0% | |
| CTCAAAACAGTTTCAAAGTA+AGG | - | chr1.1:72150853-72150872 | None:intergenic | 30.0% | |
| CTTTATCTGAATGAAGACTA+TGG | - | chr1.1:72150828-72150847 | None:intergenic | 30.0% | |
| CTTTCTTGGAAGAAAAAACT+CGG | - | chr1.1:72151817-72151836 | None:intergenic | 30.0% | |
| GAAAAATGGGATGATGTTAA+GGG | + | chr1.1:72150939-72150958 | MS.gene006273:CDS | 30.0% | |
| GCATAATTCATTCATTTGCA+AGG | + | chr1.1:72152342-72152361 | MS.gene006273:intron | 30.0% | |
| GCATTGGAGAAGAAAATAAA+GGG | + | chr1.1:72151273-72151292 | MS.gene006273:CDS | 30.0% | |
| GGAATCCTTTATTGAAATGA+AGG | - | chr1.1:72150974-72150993 | None:intergenic | 30.0% | |
| GTGAGTTCAACATAGTTATA+TGG | - | chr1.1:72152280-72152299 | None:intergenic | 30.0% | |
| GTTGAGAAAGAAGAGAAAAA+TGG | + | chr1.1:72150925-72150944 | MS.gene006273:CDS | 30.0% | |
| TAAAGGGACATGATCATAAA+AGG | + | chr1.1:72151289-72151308 | MS.gene006273:CDS | 30.0% | |
| TAGAGTAAAAGAGAGTTTAG+AGG | + | chr1.1:72150999-72151018 | MS.gene006273:CDS | 30.0% | |
| TCACGTACATTTAACAAAAG+GGG | + | chr1.1:72151852-72151871 | MS.gene006273:intron | 30.0% | |
| TGGTAATAATGTGCAATCAA+TGG | + | chr1.1:72151377-72151396 | MS.gene006273:CDS | 30.0% | |
| TGTAATCTACTTCTTGCAAA+AGG | + | chr1.1:72152133-72152152 | MS.gene006273:intron | 30.0% | |
| TTCTATGGAATGTGTGAAAA+GGG | - | chr1.1:72151614-72151633 | None:intergenic | 30.0% | |
| TTCTCAATTGAGTGATTTCA+AGG | - | chr1.1:72152229-72152248 | None:intergenic | 30.0% | |
| TTTCTTGGAAGAAAAAACTC+GGG | - | chr1.1:72151816-72151835 | None:intergenic | 30.0% | |
| ! | ACTCTCTTTTACTCTAGATA+AGG | - | chr1.1:72150995-72151014 | None:intergenic | 30.0% |
| ! | AGAGAAGCTAGTTTCTTATA+TGG | + | chr1.1:72152051-72152070 | MS.gene006273:intron | 30.0% |
| ! | ATTGTTGAGTTTGTACTGAT+TGG | - | chr1.1:72150773-72150792 | None:intergenic | 30.0% |
| ! | GTACATGTAATGGAACTTAT+AGG | + | chr1.1:72151749-72151768 | MS.gene006273:intron | 30.0% |
| ! | TAGAGAGTATGTGTATACAT+AGG | + | chr1.1:72152079-72152098 | MS.gene006273:intron | 30.0% |
| !! | AATATTGCTACCTCTAGAAT+TGG | + | chr1.1:72153509-72153528 | MS.gene006273:CDS | 30.0% |
| !! | GGGATATTAATAACTTGCTT+AGG | + | chr1.1:72151229-72151248 | MS.gene006273:CDS | 30.0% |
| !!! | AACTGTTTTGAGAGAAAAAC+AGG | + | chr1.1:72150861-72150880 | MS.gene006273:CDS | 30.0% |
| !!! | GAGTTCATTTAGTTTGGTTT+TGG | + | chr1.1:72152532-72152551 | MS.gene006273:intron | 30.0% |
| AAGAGGCAAGGTTAATATCA+AGG | + | chr1.1:72151103-72151122 | MS.gene006273:CDS | 35.0% | |
| ACAAGAACTGCAGAAAACAA+AGG | + | chr1.1:72153241-72153260 | MS.gene006273:CDS | 35.0% | |
| ACATCCTAACACAATACTTC+CGG | - | chr1.1:72151955-72151974 | None:intergenic | 35.0% | |
| ACTGATAGTAGCAGTATTAC+CGG | + | chr1.1:72151933-72151952 | MS.gene006273:intron | 35.0% | |
| AGAAGATAGAGAGAGAATCT+TGG | + | chr1.1:72152665-72152684 | MS.gene006273:CDS | 35.0% | |
| AGCTTGTGAATTGGAAGTTA+AGG | + | chr1.1:72152850-72152869 | MS.gene006273:CDS | 35.0% | |
| AGTTTGGATTGCAGAAAGTT+GGG | + | chr1.1:72151334-72151353 | MS.gene006273:CDS | 35.0% | |
| CAAGAACTGCAGAAAACAAA+GGG | + | chr1.1:72153242-72153261 | MS.gene006273:CDS | 35.0% | |
| CACTCAATTGAGAAGATCTT+TGG | + | chr1.1:72152235-72152254 | MS.gene006273:CDS | 35.0% | |
| CATACCGAGTTCATTTAGTT+TGG | + | chr1.1:72152526-72152545 | MS.gene006273:intron | 35.0% | |
| CTAGAATTGGAAATGCCAAA+AGG | + | chr1.1:72153522-72153541 | MS.gene006273:CDS | 35.0% | |
| CTTCTATGGAATGTGTGAAA+AGG | - | chr1.1:72151615-72151634 | None:intergenic | 35.0% | |
| GAAAAACAGGATGTATTGGA+TGG | + | chr1.1:72150874-72150893 | MS.gene006273:CDS | 35.0% | |
| GAGAGAAAAACAGGATGTAT+TGG | + | chr1.1:72150870-72150889 | MS.gene006273:CDS | 35.0% | |
| GTCACATACTCAATTCTTGT+TGG | - | chr1.1:72153074-72153093 | None:intergenic | 35.0% | |
| TCACACATTCCATAGAAGAT+GGG | + | chr1.1:72151617-72151636 | MS.gene006273:intron | 35.0% | |
| TGAAGAAAGGATTGCATTTC+TGG | - | chr1.1:72153554-72153573 | None:intergenic | 35.0% | |
| TGAAGTGGAAGTTGTTAGTT+TGG | + | chr1.1:72151440-72151459 | MS.gene006273:CDS | 35.0% | |
| TGTATTGGATGGAAATGAAG+TGG | + | chr1.1:72150885-72150904 | MS.gene006273:CDS | 35.0% | |
| TGTCTAACTGTTAAAGGTAG+AGG | + | chr1.1:72152775-72152794 | MS.gene006273:intron | 35.0% | |
| TGTTTGAATGTTCCATTAGG+TGG | + | chr1.1:72153208-72153227 | MS.gene006273:intron | 35.0% | |
| TTCACACATTCCATAGAAGA+TGG | + | chr1.1:72151616-72151635 | MS.gene006273:intron | 35.0% | |
| TTCCATAGAAGATGGGAAAA+TGG | + | chr1.1:72151624-72151643 | MS.gene006273:intron | 35.0% | |
| TTTATCTTGTGTCTCGCATA+GGG | + | chr1.1:72151558-72151577 | MS.gene006273:intron | 35.0% | |
| TTTGGCATTTCCAATTCTAG+AGG | - | chr1.1:72153522-72153541 | None:intergenic | 35.0% | |
| ! | AAGCATGAAGCATTTGTGAA+AGG | - | chr1.1:72152409-72152428 | None:intergenic | 35.0% |
| ! | AGCATGAAGCATTTGTGAAA+GGG | - | chr1.1:72152408-72152427 | None:intergenic | 35.0% |
| ! | CTCGGTATGATTTTGAACTA+TGG | - | chr1.1:72152515-72152534 | None:intergenic | 35.0% |
| ! | GAAGATCTTTGGAAGAATCT+AGG | + | chr1.1:72152246-72152265 | MS.gene006273:CDS | 35.0% |
| ! | GGCATTGGAGAAGAAAATAA+AGG | + | chr1.1:72151272-72151291 | MS.gene006273:CDS | 35.0% |
| ! | TACCATTTTCCCATCTTCTA+TGG | - | chr1.1:72151629-72151648 | None:intergenic | 35.0% |
| ! | TGTCAGAGAAATAGTTTGTG+AGG | + | chr1.1:72151041-72151060 | MS.gene006273:CDS | 35.0% |
| !! | AGTTTGTACTGATTGGAAGA+TGG | - | chr1.1:72150766-72150785 | None:intergenic | 35.0% |
| !! | ATTACCGGAAGTATTGTGTT+AGG | + | chr1.1:72151948-72151967 | MS.gene006273:intron | 35.0% |
| !! | GTTTGTACTGATTGGAAGAT+GGG | - | chr1.1:72150765-72150784 | None:intergenic | 35.0% |
| !! | TGAATCAACGGTGTTGTTAT+TGG | + | chr1.1:72151080-72151099 | MS.gene006273:CDS | 35.0% |
| !!! | CATTTCTGGTATCATCCTTT+TGG | - | chr1.1:72153540-72153559 | None:intergenic | 35.0% |
| AACTCAGCAAACTGCAAAAG+TGG | - | chr1.1:72151318-72151337 | None:intergenic | 40.0% | |
| AAGTGAGTCGACGTATATGT+TGG | + | chr1.1:72153456-72153475 | MS.gene006273:CDS | 40.0% | |
| AATATCAAGGCTTGCAACTG+AGG | + | chr1.1:72151116-72151135 | MS.gene006273:CDS | 40.0% | |
| ACTATGGTCAGAAACTTCAG+AGG | - | chr1.1:72150812-72150831 | None:intergenic | 40.0% | |
| ACTCAAAGAAGAGCTAGCAA+TGG | + | chr1.1:72153295-72153314 | MS.gene006273:CDS | 40.0% | |
| AGAGAGTTTAGAGGGAGAAA+AGG | + | chr1.1:72151008-72151027 | MS.gene006273:CDS | 40.0% | |
| AGTTGGGTTTGGATTCATGA+TGG | + | chr1.1:72151350-72151369 | MS.gene006273:CDS | 40.0% | |
| ATCAATGGATGGTACTTCTG+AGG | + | chr1.1:72151392-72151411 | MS.gene006273:CDS | 40.0% | |
| ATGGAAGGAAGCTTGTGAAT+TGG | + | chr1.1:72152841-72152860 | MS.gene006273:CDS | 40.0% | |
| CATTATCCTTTCCACTGTTG+AGG | - | chr1.1:72152195-72152214 | None:intergenic | 40.0% | |
| CTCAATCTAAAAACTGGCCA+TGG | - | chr1.1:72153482-72153501 | None:intergenic | 40.0% | |
| CTTTATCTTGTGTCTCGCAT+AGG | + | chr1.1:72151557-72151576 | MS.gene006273:intron | 40.0% | |
| GAAAAAGGAGAAGAGAGAGT+TGG | + | chr1.1:72151173-72151192 | MS.gene006273:CDS | 40.0% | |
| GAGTTTGGATTGCAGAAAGT+TGG | + | chr1.1:72151333-72151352 | MS.gene006273:CDS | 40.0% | |
| GATGGGAAAATGGTACATGT+AGG | + | chr1.1:72151634-72151653 | MS.gene006273:intron | 40.0% | |
| GTTGGGTTTGGATTCATGAT+GGG | + | chr1.1:72151351-72151370 | MS.gene006273:CDS | 40.0% | |
| TGCAAGGAAGTGAGTGAAAA+AGG | + | chr1.1:72152358-72152377 | MS.gene006273:intron | 40.0% | |
| TGGCAACACTGTACATGTAA+TGG | + | chr1.1:72151739-72151758 | MS.gene006273:intron | 40.0% | |
| TGTGAATTGGAAGTTAAGGC+TGG | + | chr1.1:72152854-72152873 | MS.gene006273:CDS | 40.0% | |
| TTGAAGCTAGCTGATAGTAG+AGG | + | chr1.1:72153353-72153372 | MS.gene006273:CDS | 40.0% | |
| ! | GATTGAAGAGCGTGACAAAA+TGG | + | chr1.1:72152886-72152905 | MS.gene006273:CDS | 40.0% |
| ! | TCAGAAACTTCAGAGGTGTA+GGG | - | chr1.1:72150805-72150824 | None:intergenic | 40.0% |
| ! | TGTTGTTATTGGAAGAGGCA+AGG | + | chr1.1:72151091-72151110 | MS.gene006273:CDS | 40.0% |
| ! | TTTGTTGGAGAAAGAGGCAT+TGG | + | chr1.1:72151257-72151276 | MS.gene006273:CDS | 40.0% |
| ! | TTTGTTTCTCTGTGAGACAC+TGG | - | chr1.1:72152605-72152624 | None:intergenic | 40.0% |
| !! | AACGGTGTTGTTATTGGAAG+AGG | + | chr1.1:72151086-72151105 | MS.gene006273:CDS | 40.0% |
| !!! | CTTTTGCAGTTTGCTGAGTT+TGG | + | chr1.1:72151318-72151337 | MS.gene006273:CDS | 40.0% |
| AACTGAGGTGGAAACAAAGG+TGG | + | chr1.1:72151131-72151150 | MS.gene006273:CDS | 45.0% | |
| AGAAGAGGTAGCTAGATGGA+AGG | + | chr1.1:72152826-72152845 | MS.gene006273:CDS | 45.0% | |
| AGATAGCAGTGAGTGTGAAG+TGG | + | chr1.1:72151425-72151444 | MS.gene006273:CDS | 45.0% | |
| CAGAAGAAGAGGTAGCTAGA+TGG | + | chr1.1:72152822-72152841 | MS.gene006273:CDS | 45.0% | |
| CTCTGATTCCTCTAGTTGTC+TGG | - | chr1.1:72153411-72153430 | None:intergenic | 45.0% | |
| CTGATTGGAAGATGGGTGAT+AGG | - | chr1.1:72150758-72150777 | None:intergenic | 45.0% | |
| GGAACTAACCAGACAACTAG+AGG | + | chr1.1:72153400-72153419 | MS.gene006273:CDS | 45.0% | |
| GGATTGCAGAAAGTTGGGTT+TGG | + | chr1.1:72151339-72151358 | MS.gene006273:CDS | 45.0% | |
| GGGTAACAATGTACACCTAC+TGG | - | chr1.1:72151594-72151613 | None:intergenic | 45.0% | |
| GTAGAGGAGTTGAACTTCGT+CGG | + | chr1.1:72153369-72153388 | MS.gene006273:CDS | 45.0% | |
| TGCAACTGAGGTGGAAACAA+AGG | + | chr1.1:72151128-72151147 | MS.gene006273:CDS | 45.0% | |
| ! | ATTTTCCAAGGCCTCAACAG+TGG | + | chr1.1:72152181-72152200 | MS.gene006273:intron | 45.0% |
| ! | CTTGCTTAGGGTTGCTTTGT+TGG | + | chr1.1:72151242-72151261 | MS.gene006273:CDS | 45.0% |
| ! | GGTGCTTTGGACATATCCAA+TGG | + | chr1.1:72153263-72153282 | MS.gene006273:CDS | 45.0% |
| ! | GGTTGCTTTGTTGGAGAAAG+AGG | + | chr1.1:72151251-72151270 | MS.gene006273:CDS | 45.0% |
| ! | GTCAGAAACTTCAGAGGTGT+AGG | - | chr1.1:72150806-72150825 | None:intergenic | 45.0% |
| ! | TCAGAGGTGTAGGGTGAATT+TGG | - | chr1.1:72150796-72150815 | None:intergenic | 45.0% |
| ! | TTTGGATTCATGATGGGAGG+TGG | + | chr1.1:72151357-72151376 | MS.gene006273:CDS | 45.0% |
| !! | GCAGAAAACAAAGGGTGCTT+TGG | + | chr1.1:72153250-72153269 | MS.gene006273:CDS | 45.0% |
| !!! | TAGGGCATTTTAGCTCCAGT+AGG | + | chr1.1:72151576-72151595 | MS.gene006273:intron | 45.0% |
| AATGGCTGCAATAGCTGCAC+AGG | + | chr1.1:72153313-72153332 | MS.gene006273:CDS | 50.0% | |
| ATCAAGGCTTGCAACTGAGG+TGG | + | chr1.1:72151119-72151138 | MS.gene006273:CDS | 50.0% | |
| GTCGACGTATATGTTGGCCA+TGG | + | chr1.1:72153462-72153481 | MS.gene006273:CDS | 50.0% | |
| GTTTCAGTGCAGCCACCTAA+TGG | - | chr1.1:72153223-72153242 | None:intergenic | 50.0% | |
| GTTTCTCTGTGAGACACTGG+AGG | - | chr1.1:72152602-72152621 | None:intergenic | 50.0% | |
| TGAACTTCGTCGGCAGATAG+AGG | + | chr1.1:72153379-72153398 | MS.gene006273:CDS | 50.0% | |
| ! | GGGTTTGGATTCATGATGGG+AGG | + | chr1.1:72151354-72151373 | MS.gene006273:CDS | 50.0% |
| CCAAGGCCTCAACAGTGGAA+AGG | + | chr1.1:72152186-72152205 | MS.gene006273:intron | 55.0% | |
| CCTTTCCACTGTTGAGGCCT+TGG | - | chr1.1:72152189-72152208 | None:intergenic | 55.0% | |
| CTGCACAGGAAGCAGCAGAG+AGG | + | chr1.1:72153327-72153346 | MS.gene006273:CDS | 60.0% | |
| ! | GAGGCGCTCTGTGTCTGACC+TGG | - | chr1.1:72152583-72152602 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 72150745 | 72153577 | 72150745 | ID=MS.gene006273 |
| chr1.1 | mRNA | 72150745 | 72153577 | 72150745 | ID=MS.gene006273.t1;Parent=MS.gene006273 |
| chr1.1 | exon | 72150745 | 72151461 | 72150745 | ID=MS.gene006273.t1.exon1;Parent=MS.gene006273.t1 |
| chr1.1 | CDS | 72150745 | 72151461 | 72150745 | ID=cds.MS.gene006273.t1;Parent=MS.gene006273.t1 |
| chr1.1 | exon | 72152191 | 72152267 | 72152191 | ID=MS.gene006273.t1.exon2;Parent=MS.gene006273.t1 |
| chr1.1 | CDS | 72152191 | 72152267 | 72152191 | ID=cds.MS.gene006273.t1;Parent=MS.gene006273.t1 |
| chr1.1 | exon | 72152584 | 72152695 | 72152584 | ID=MS.gene006273.t1.exon3;Parent=MS.gene006273.t1 |
| chr1.1 | CDS | 72152584 | 72152695 | 72152584 | ID=cds.MS.gene006273.t1;Parent=MS.gene006273.t1 |
| chr1.1 | exon | 72152791 | 72152907 | 72152791 | ID=MS.gene006273.t1.exon4;Parent=MS.gene006273.t1 |
| chr1.1 | CDS | 72152791 | 72152907 | 72152791 | ID=cds.MS.gene006273.t1;Parent=MS.gene006273.t1 |
| chr1.1 | exon | 72153227 | 72153577 | 72153227 | ID=MS.gene006273.t1.exon5;Parent=MS.gene006273.t1 |
| chr1.1 | CDS | 72153227 | 72153577 | 72153227 | ID=cds.MS.gene006273.t1;Parent=MS.gene006273.t1 |
| Gene Sequence |
| Protein sequence |
