Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006651.t1 | XP_003607540.2 | 99.5 | 665 | 3 | 0 | 1 | 665 | 1 | 665 | 0.00E+00 | 1258 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006651.t1 | O25225 | 46.5 | 609 | 309 | 6 | 57 | 661 | 4 | 599 | 8.9e-151 | 535.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006651.t1 | G7JUZ7 | 99.5 | 665 | 3 | 0 | 1 | 665 | 1 | 665 | 0.0e+00 | 1258.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene040952 | MS.gene006651 | PPI |
| MS.gene018869 | MS.gene006651 | PPI |
| MS.gene061606 | MS.gene006651 | PPI |
| MS.gene006651 | MS.gene89744 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006651.t1 | MTR_4g079360 | 99.549 | 665 | 3 | 0 | 1 | 665 | 1 | 665 | 0.0 | 1355 |
| MS.gene006651.t1 | MTR_1g052535 | 42.379 | 597 | 326 | 7 | 57 | 648 | 82 | 665 | 6.65e-152 | 455 |
| MS.gene006651.t1 | MTR_1g052535 | 43.627 | 408 | 214 | 5 | 57 | 459 | 82 | 478 | 4.68e-104 | 325 |
| MS.gene006651.t1 | MTR_3g097250 | 28.007 | 582 | 321 | 22 | 8 | 534 | 18 | 556 | 4.43e-36 | 144 |
| MS.gene006651.t1 | MTR_7g009740 | 31.518 | 257 | 134 | 4 | 54 | 292 | 64 | 296 | 1.44e-28 | 122 |
| MS.gene006651.t1 | MTR_4g119340 | 41.045 | 134 | 73 | 1 | 53 | 180 | 10 | 143 | 8.98e-24 | 107 |
| MS.gene006651.t1 | MTR_7g044770 | 36.898 | 187 | 101 | 5 | 8 | 180 | 11 | 194 | 1.92e-23 | 106 |
| MS.gene006651.t1 | MTR_7g094460 | 28.383 | 303 | 186 | 9 | 4 | 295 | 17 | 299 | 7.21e-21 | 96.3 |
| MS.gene006651.t1 | MTR_1g048000 | 40.816 | 147 | 65 | 4 | 55 | 180 | 17 | 162 | 9.33e-21 | 97.8 |
| MS.gene006651.t1 | MTR_2g069050 | 40.816 | 147 | 65 | 4 | 55 | 180 | 17 | 162 | 9.92e-21 | 97.8 |
| MS.gene006651.t1 | MTR_2g069310 | 40.816 | 147 | 65 | 4 | 55 | 180 | 17 | 162 | 1.05e-20 | 97.4 |
| MS.gene006651.t1 | MTR_2g069320 | 38.776 | 147 | 68 | 3 | 55 | 180 | 17 | 162 | 5.08e-20 | 95.5 |
| MS.gene006651.t1 | MTR_2g021300 | 29.434 | 265 | 168 | 8 | 37 | 292 | 29 | 283 | 9.80e-20 | 92.8 |
| MS.gene006651.t1 | MTR_4g101750 | 36.145 | 166 | 95 | 3 | 21 | 180 | 61 | 221 | 2.61e-19 | 92.8 |
| MS.gene006651.t1 | MTR_4g101750 | 36.145 | 166 | 95 | 3 | 21 | 180 | 61 | 221 | 2.74e-19 | 92.8 |
| MS.gene006651.t1 | MTR_2g020660 | 36.364 | 165 | 85 | 4 | 34 | 181 | 27 | 188 | 6.78e-19 | 91.7 |
| MS.gene006651.t1 | MTR_3g076660 | 28.906 | 256 | 162 | 7 | 59 | 300 | 94 | 343 | 1.24e-17 | 86.7 |
| MS.gene006651.t1 | MTR_4g116430 | 35.714 | 140 | 78 | 2 | 53 | 180 | 135 | 274 | 2.95e-17 | 86.7 |
| MS.gene006651.t1 | MTR_8g087950 | 26.165 | 279 | 165 | 8 | 48 | 292 | 266 | 537 | 7.50e-13 | 72.4 |
| MS.gene006651.t1 | MTR_8g087950 | 26.165 | 279 | 165 | 8 | 48 | 292 | 339 | 610 | 1.19e-12 | 71.6 |
| MS.gene006651.t1 | MTR_1g085410 | 27.273 | 264 | 150 | 9 | 59 | 289 | 9 | 263 | 3.54e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006651.t1 | AT2G31060 | 80.240 | 668 | 128 | 2 | 1 | 665 | 1 | 667 | 0.0 | 1092 |
| MS.gene006651.t1 | AT2G31060 | 79.762 | 672 | 128 | 3 | 1 | 665 | 1 | 671 | 0.0 | 1086 |
| MS.gene006651.t1 | AT2G31060 | 82.543 | 527 | 92 | 0 | 139 | 665 | 1 | 527 | 0.0 | 911 |
| MS.gene006651.t1 | AT5G13650 | 42.615 | 650 | 340 | 11 | 28 | 665 | 47 | 675 | 1.18e-158 | 473 |
| MS.gene006651.t1 | AT5G13650 | 42.704 | 651 | 339 | 12 | 28 | 665 | 47 | 676 | 1.02e-157 | 470 |
| MS.gene006651.t1 | AT5G08650 | 29.559 | 521 | 281 | 22 | 55 | 534 | 84 | 559 | 9.93e-40 | 155 |
| MS.gene006651.t1 | AT5G08650 | 29.559 | 521 | 281 | 22 | 55 | 534 | 84 | 559 | 3.71e-39 | 154 |
| MS.gene006651.t1 | AT5G39900 | 33.333 | 249 | 130 | 6 | 56 | 292 | 65 | 289 | 6.88e-30 | 125 |
| MS.gene006651.t1 | AT2G45030 | 37.037 | 189 | 106 | 4 | 4 | 180 | 10 | 197 | 3.56e-26 | 114 |
| MS.gene006651.t1 | AT3G22980 | 43.511 | 131 | 68 | 1 | 56 | 180 | 8 | 138 | 3.54e-25 | 112 |
| MS.gene006651.t1 | AT3G22980 | 43.511 | 131 | 68 | 1 | 56 | 180 | 8 | 138 | 3.54e-25 | 112 |
| MS.gene006651.t1 | AT3G22980 | 43.511 | 131 | 68 | 1 | 56 | 180 | 8 | 138 | 3.54e-25 | 112 |
| MS.gene006651.t1 | AT1G45332 | 36.508 | 189 | 107 | 4 | 4 | 180 | 10 | 197 | 4.41e-25 | 111 |
| MS.gene006651.t1 | AT1G56070 | 40.816 | 147 | 65 | 4 | 55 | 180 | 17 | 162 | 1.38e-20 | 97.4 |
| MS.gene006651.t1 | AT1G56070 | 40.816 | 147 | 65 | 4 | 55 | 180 | 17 | 162 | 1.38e-20 | 97.4 |
| MS.gene006651.t1 | AT1G56070 | 40.816 | 147 | 65 | 4 | 55 | 180 | 17 | 162 | 1.38e-20 | 97.4 |
| MS.gene006651.t1 | AT4G20360 | 28.041 | 296 | 181 | 10 | 29 | 300 | 43 | 330 | 2.70e-20 | 95.1 |
| MS.gene006651.t1 | AT4G20360 | 28.041 | 296 | 181 | 10 | 29 | 300 | 43 | 330 | 2.70e-20 | 95.1 |
| MS.gene006651.t1 | AT3G12915 | 40.136 | 147 | 66 | 4 | 55 | 180 | 17 | 162 | 3.54e-20 | 95.9 |
| MS.gene006651.t1 | AT1G62750 | 41.085 | 129 | 70 | 2 | 58 | 180 | 97 | 225 | 6.47e-19 | 91.7 |
| MS.gene006651.t1 | AT1G06220 | 34.286 | 140 | 80 | 2 | 53 | 180 | 134 | 273 | 4.07e-17 | 86.3 |
| MS.gene006651.t1 | AT1G06220 | 34.286 | 140 | 80 | 2 | 53 | 180 | 134 | 273 | 4.07e-17 | 86.3 |
| MS.gene006651.t1 | AT1G06220 | 34.286 | 140 | 80 | 2 | 53 | 180 | 134 | 273 | 4.07e-17 | 86.3 |
| MS.gene006651.t1 | AT4G02930 | 27.526 | 287 | 180 | 8 | 59 | 335 | 69 | 337 | 6.50e-17 | 84.3 |
| MS.gene006651.t1 | AT5G25230 | 32.857 | 140 | 82 | 2 | 53 | 180 | 120 | 259 | 7.63e-16 | 82.0 |
| MS.gene006651.t1 | AT5G25230 | 32.857 | 140 | 82 | 2 | 53 | 180 | 120 | 259 | 7.63e-16 | 82.0 |
| MS.gene006651.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 59 | 301 | 317 | 586 | 8.57e-13 | 72.0 |
| MS.gene006651.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 59 | 301 | 312 | 581 | 8.76e-13 | 72.0 |
| MS.gene006651.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 59 | 301 | 241 | 510 | 1.01e-12 | 72.0 |
| MS.gene006651.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 59 | 301 | 242 | 511 | 1.01e-12 | 72.0 |
| MS.gene006651.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 59 | 301 | 242 | 511 | 1.01e-12 | 72.0 |
Find 186 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACTGGACGCGTGCATTC+TGG | 0.099819 | 4.1:-26758668 | MS.gene006651:CDS |
| ATGGAGAAGGACAATTATTT+TGG | 0.138242 | 4.1:-26758698 | MS.gene006651:CDS |
| CTTGCAAAAGCCTTAAAGTA+TGG | 0.191909 | 4.1:-26761624 | MS.gene006651:CDS |
| CATGCCTGGAAGCACATTTA+TGG | 0.229177 | 4.1:+26756999 | None:intergenic |
| TTGCAAGAACAAACTTAGTT+TGG | 0.248466 | 4.1:+26761640 | None:intergenic |
| AGGTCGCAACCCATACTTTA+AGG | 0.256662 | 4.1:+26761614 | None:intergenic |
| TGACTGGACGCGTGCATTCT+GGG | 0.284327 | 4.1:-26758667 | MS.gene006651:CDS |
| GAGCAGGTGTCAGTGGGTTT+TGG | 0.285168 | 4.1:-26753001 | MS.gene006651:intron |
| TTTAAATACTAACCAGCATT+TGG | 0.301910 | 4.1:+26759097 | None:intergenic |
| GGTGATATAATTTCAATTGC+TGG | 0.318576 | 4.1:-26758114 | MS.gene006651:CDS |
| TATGGTTGAGGGAGCAGTTT+TGG | 0.325847 | 4.1:-26761691 | MS.gene006651:CDS |
| CCAACAATATCTATGACTTT+TGG | 0.334446 | 4.1:-26757326 | MS.gene006651:CDS |
| CAAGGTATTTCTTCCGTAAC+CGG | 0.334914 | 4.1:+26749822 | None:intergenic |
| TTCCGTAACCGGATTGCCTT+TGG | 0.337094 | 4.1:+26749833 | None:intergenic |
| TCGATTGTAACTTCTTCTAT+TGG | 0.338758 | 4.1:+26755928 | None:intergenic |
| TGCATTACCGACAGTTGAAT+TGG | 0.343501 | 4.1:-26757354 | MS.gene006651:CDS |
| ATTTACCTCACCACCGAAAT+CGG | 0.345616 | 4.1:+26762497 | None:intergenic |
| CATCAATGTTTGCATTTGGT+GGG | 0.355337 | 4.1:+26759127 | None:intergenic |
| ACTCCTGGTCACGCCGATTT+CGG | 0.357025 | 4.1:-26762510 | MS.gene006651:CDS |
| TCAGAAACTCACATGACTTT+AGG | 0.365612 | 4.1:+26756789 | None:intergenic |
| GGGTTGTTCGTGTTGGTGAC+AGG | 0.367855 | 4.1:-26758646 | MS.gene006651:CDS |
| TGGTATCACTATCTCTTCTA+AGG | 0.367912 | 4.1:-26762661 | MS.gene006651:intron |
| TCAGAAACATTTGAAGTTCA+AGG | 0.369709 | 4.1:-26756976 | MS.gene006651:CDS |
| AGCAGTGAGACACGTGGAAC+TGG | 0.379332 | 4.1:-26753582 | MS.gene006651:CDS |
| TACCATCACGACCAGCTAAT+GGG | 0.380573 | 4.1:+26757291 | None:intergenic |
| CAAAAGTCATAGATATTGTT+GGG | 0.383621 | 4.1:+26757327 | None:intergenic |
| TGCAAGAACAAACTTAGTTT+GGG | 0.386224 | 4.1:+26761641 | None:intergenic |
| GTTTGATCTATTTGCGAACC+TGG | 0.390041 | 4.1:-26759384 | MS.gene006651:CDS |
| GCATCAATGTTTGCATTTGG+TGG | 0.397817 | 4.1:+26759126 | None:intergenic |
| CTTGCCATAAATGTGCTTCC+AGG | 0.401944 | 4.1:-26757003 | MS.gene006651:CDS |
| TTAGCAGAAGCATAAAGAAC+AGG | 0.405768 | 4.1:+26759243 | None:intergenic |
| GGACTACGTAACAAAGATTC+TGG | 0.405995 | 4.1:-26758617 | MS.gene006651:CDS |
| GAAAGATAATGAGTTGAATA+TGG | 0.413770 | 4.1:-26762538 | MS.gene006651:CDS |
| TTAGCTCTTACCTCCATTCC+AGG | 0.415972 | 4.1:+26752920 | None:intergenic |
| CTTAATTGAGCAGGTGTCAG+TGG | 0.420773 | 4.1:-26753008 | MS.gene006651:intron |
| ATGACACTTGAAGAAGCTAT+AGG | 0.422606 | 4.1:-26751056 | MS.gene006651:CDS |
| TCAATGTTTGCATTTGGTGG+GGG | 0.425685 | 4.1:+26759129 | None:intergenic |
| ACGCTCACGTTCAAGCGAAA+TGG | 0.428414 | 4.1:+26762683 | None:intergenic |
| GTAAGTTGTTTGGCCCTCAC+TGG | 0.431349 | 4.1:+26752282 | None:intergenic |
| CTTTATGCTTCTGCTAAAGA+AGG | 0.432930 | 4.1:-26759237 | MS.gene006651:CDS |
| GCGTACATTTGTAAGTTGTT+TGG | 0.436322 | 4.1:+26752272 | None:intergenic |
| TTCAGGTTACTTCAATTTCG+TGG | 0.436713 | 4.1:-26762560 | MS.gene006651:intron |
| ACTTTGTTTAAAAGAAGAAT+AGG | 0.443752 | 4.1:+26761594 | None:intergenic |
| GGTGCATCAATGTTTGCATT+TGG | 0.447087 | 4.1:+26759123 | None:intergenic |
| TGACACTTGAAGAAGCTATA+GGG | 0.447678 | 4.1:-26751055 | MS.gene006651:CDS |
| TGATGCCGGGGAAGGTCCAC+TGG | 0.448072 | 4.1:-26761664 | MS.gene006651:CDS |
| ATCAATGTTTGCATTTGGTG+GGG | 0.448811 | 4.1:+26759128 | None:intergenic |
| CTCCAAAGGCAATCCGGTTA+CGG | 0.450717 | 4.1:-26749835 | MS.gene006651:CDS |
| TTGGGCCAGTGGACCTTCCC+CGG | 0.450937 | 4.1:+26761659 | None:intergenic |
| CCAAAAGTCATAGATATTGT+TGG | 0.455246 | 4.1:+26757326 | None:intergenic |
| GAGCGATGACGGCGACGTTA+CGG | 0.458253 | 4.1:+26762790 | None:intergenic |
| GTACCATCACGACCAGCTAA+TGG | 0.460981 | 4.1:+26757290 | None:intergenic |
| GGCATCGGCAGGAGGATCCT+TGG | 0.465760 | 4.1:+26759194 | None:intergenic |
| ATCGAGTGATGCGGCGGGAG+AGG | 0.467137 | 4.1:+26762824 | None:intergenic |
| TGATGCACCTTTCCAAATGC+TGG | 0.469645 | 4.1:-26759109 | MS.gene006651:intron |
| ACATTTGAAGTTCAAGGAAG+AGG | 0.470958 | 4.1:-26756970 | MS.gene006651:CDS |
| CGAGAGGGAGATTGAGTGAG+AGG | 0.471057 | 4.1:+26762894 | None:intergenic |
| TCAAATGTTTCTGACATGCC+TGG | 0.471398 | 4.1:+26756985 | None:intergenic |
| TAGAGTGAACGGAGAAGAAA+AGG | 0.472682 | 4.1:+26762951 | None:intergenic |
| CGTGTTGGTGACAGGGTTCA+CGG | 0.478811 | 4.1:-26758638 | MS.gene006651:CDS |
| TTTGCGAACCTGGGTGCTAC+AGG | 0.479237 | 4.1:-26759374 | MS.gene006651:intron |
| TGATGCGGCGGGAGAGGAGG+TGG | 0.479495 | 4.1:+26762830 | None:intergenic |
| GCATATGATGGAATGATTGT+TGG | 0.485181 | 4.1:-26752416 | MS.gene006651:CDS |
| TTGAGTGAGAGGTGAAGAAG+AGG | 0.485805 | 4.1:+26762905 | None:intergenic |
| TGTTTGTTCAGGGGCCTGGT+TGG | 0.487257 | 4.1:-26753621 | MS.gene006651:intron |
| TTGCAAAAGCCTTAAAGTAT+GGG | 0.487539 | 4.1:-26761623 | MS.gene006651:CDS |
| GTAACTGATTGTGCTGGAGC+TGG | 0.492213 | 4.1:-26758135 | MS.gene006651:CDS |
| GGTCCTGTCGCGGGAACTGT+CGG | 0.492601 | 4.1:-26755758 | MS.gene006651:CDS |
| GGCGGGAGAGGAGGTGGCAG+CGG | 0.493074 | 4.1:+26762836 | None:intergenic |
| ACCGGCTGCTTCGTCAGTGC+GGG | 0.493758 | 4.1:-26762737 | MS.gene006651:CDS |
| GGGAGAGGAGGTGGCAGCGG+CGG | 0.496530 | 4.1:+26762839 | None:intergenic |
| TTTACTTCATGTAGTTACTC+AGG | 0.497053 | 4.1:-26759435 | MS.gene006651:intron |
| AAGCACATTTATGGCAAGGT+TGG | 0.498295 | 4.1:+26757008 | None:intergenic |
| GCGACGTTACGGAGGCGGTT+AGG | 0.499199 | 4.1:+26762801 | None:intergenic |
| CATTCTGGGGTTGTTCGTGT+TGG | 0.502367 | 4.1:-26758653 | MS.gene006651:CDS |
| ATTGAGAATATGAGGCGTGA+GGG | 0.504218 | 4.1:-26756834 | MS.gene006651:CDS |
| GTGACCGTATGGCCGATTGA+TGG | 0.508062 | 4.1:+26758081 | None:intergenic |
| GGTTGTTCGTGTTGGTGACA+GGG | 0.508285 | 4.1:-26758645 | MS.gene006651:CDS |
| TGCTTCTGCTAAAGAAGGAT+GGG | 0.508296 | 4.1:-26759232 | MS.gene006651:CDS |
| ACTGACATGGGTCCTGTCGC+GGG | 0.511743 | 4.1:-26755767 | MS.gene006651:CDS |
| CAATGTGAGGAAAGGAGTAC+TGG | 0.511931 | 4.1:-26753168 | MS.gene006651:intron |
| ATGCTTCTGCTAAAGAAGGA+TGG | 0.513290 | 4.1:-26759233 | MS.gene006651:CDS |
| CTTTCCTCACATTGCCAAGA+GGG | 0.513807 | 4.1:+26753177 | None:intergenic |
| TTGGTTGTTGATGCCGGGGA+AGG | 0.513931 | 4.1:-26761672 | MS.gene006651:CDS |
| ACGTGTAGTTGGTATGGTTG+AGG | 0.514995 | 4.1:-26761703 | MS.gene006651:CDS |
| CCACCGAAATCGGCGTGACC+AGG | 0.515605 | 4.1:+26762507 | None:intergenic |
| CAATGTTTGCATTTGGTGGG+GGG | 0.520181 | 4.1:+26759130 | None:intergenic |
| TTCAAGCGAAATGGAATCCA+TGG | 0.520760 | 4.1:+26762692 | None:intergenic |
| AAGTCAAACACAATCTAGTT+CGG | 0.524205 | 4.1:+26755735 | None:intergenic |
| CGTGTAGTTGGTATGGTTGA+GGG | 0.526024 | 4.1:-26761702 | MS.gene006651:CDS |
| CGATGAAGATGAGAAGAAGC+GGG | 0.532985 | 4.1:+26762863 | None:intergenic |
| AGGAAGAGGAGAACTACAGC+TGG | 0.533238 | 4.1:-26756956 | MS.gene006651:CDS |
| TCAGGTTTCAATGATGGAGA+AGG | 0.533910 | 4.1:-26758711 | MS.gene006651:intron |
| AGGTTACTCCAAAGGCAATC+CGG | 0.536677 | 4.1:-26749841 | MS.gene006651:CDS |
| TGAGCATGTTGGCTTTGTAA+TGG | 0.537501 | 4.1:-26755819 | MS.gene006651:CDS |
| CCACGGCAAAACTACTCTCA+TGG | 0.537911 | 4.1:-26762760 | MS.gene006651:CDS |
| TATTCCTCACGAACGCGCCA+TGG | 0.538660 | 4.1:-26762709 | MS.gene006651:CDS |
| TGAAAAGATTGAAGATGGAA+AGG | 0.539695 | 4.1:-26758591 | MS.gene006651:intron |
| GGTGCTGAAAAGATTGAAGA+TGG | 0.543566 | 4.1:-26758596 | MS.gene006651:CDS |
| TACTGACATGGGTCCTGTCG+CGG | 0.543655 | 4.1:-26755768 | MS.gene006651:CDS |
| CGGCCGACAGTTCCCGCGAC+AGG | 0.547284 | 4.1:+26755755 | None:intergenic |
| AACAAAGTAGACCGGCCTGC+AGG | 0.547544 | 4.1:-26761579 | MS.gene006651:intron |
| GGTTTGTCAAGTCCATCAAT+CGG | 0.551309 | 4.1:-26758093 | MS.gene006651:CDS |
| ACAAACTTAGTTTGGGCCAG+TGG | 0.552063 | 4.1:+26761648 | None:intergenic |
| TTAATTGAGCAGGTGTCAGT+GGG | 0.552375 | 4.1:-26753007 | MS.gene006651:intron |
| GTAAACGACTCCCCATTAGC+TGG | 0.554835 | 4.1:-26757302 | MS.gene006651:CDS |
| AAGTCCATCAATCGGCCATA+CGG | 0.555066 | 4.1:-26758085 | MS.gene006651:CDS |
| TACTAGGTGGAACGTGTAGT+TGG | 0.555583 | 4.1:-26761714 | MS.gene006651:intron |
| CCGCTTCTTCTCATCTTCAT+CGG | 0.564573 | 4.1:-26762862 | MS.gene006651:CDS |
| ATTTCGCTTGAACGTGAGCG+TGG | 0.565078 | 4.1:-26762681 | MS.gene006651:CDS |
| GAAACTCACATGACTTTAGG+TGG | 0.568218 | 4.1:+26756792 | None:intergenic |
| TCCCCATTAGCTGGTCGTGA+TGG | 0.569037 | 4.1:-26757293 | MS.gene006651:CDS |
| TGACGGCGACGTTACGGAGG+CGG | 0.571202 | 4.1:+26762796 | None:intergenic |
| AGGAGGATCCTTGGTATATG+TGG | 0.573836 | 4.1:+26759203 | None:intergenic |
| AAATGTACGCTCTGTGAACA+AGG | 0.574425 | 4.1:-26752259 | MS.gene006651:CDS |
| CTGGAAGCACATTTATGGCA+AGG | 0.574469 | 4.1:+26757004 | None:intergenic |
| GCGTGAGGGATTTGAGCTAT+CGG | 0.574667 | 4.1:-26756820 | MS.gene006651:CDS |
| TGGCATGAAGGTTACTCCAA+AGG | 0.578195 | 4.1:-26749849 | MS.gene006651:intron |
| AGATAATGAGTTGAATATGG+TGG | 0.580003 | 4.1:-26762535 | MS.gene006651:CDS |
| TAGGAAACTAACCTGCAGGC+CGG | 0.580937 | 4.1:+26761568 | None:intergenic |
| TCCCGCACTGACGAAGCAGC+CGG | 0.581678 | 4.1:+26762736 | None:intergenic |
| GTGGTCGACATGAGCGATGA+CGG | 0.581711 | 4.1:+26762779 | None:intergenic |
| TTTGATCTATTTGCGAACCT+GGG | 0.582164 | 4.1:-26759383 | MS.gene006651:CDS |
| GAGTGATGCGGCGGGAGAGG+AGG | 0.582439 | 4.1:+26762827 | None:intergenic |
| GACAACAAAACCAACCTCGA+TGG | 0.586420 | 4.1:+26755710 | None:intergenic |
| CTCAGCTCTTCTGTGAGACA+AGG | 0.586943 | 4.1:+26755793 | None:intergenic |
| AATTGAGAATATGAGGCGTG+AGG | 0.587826 | 4.1:-26756835 | MS.gene006651:CDS |
| TTGAATATGGTGGATACTCC+TGG | 0.588408 | 4.1:-26762525 | MS.gene006651:CDS |
| AAGAGCTGAGATTACTGACA+TGG | 0.588803 | 4.1:-26755780 | MS.gene006651:CDS |
| GAATCCATGGCGCGTTCGTG+AGG | 0.589544 | 4.1:+26762705 | None:intergenic |
| GCAGTGAGACACGTGGAACT+GGG | 0.594388 | 4.1:-26753581 | MS.gene006651:CDS |
| ATGTGATGAGGTTGAAAGTG+TGG | 0.594488 | 4.1:-26759408 | MS.gene006651:CDS |
| CCGATGAAGATGAGAAGAAG+CGG | 0.594558 | 4.1:+26762862 | None:intergenic |
| CAGGTAAATGATGAGCATGT+TGG | 0.595674 | 4.1:-26755830 | MS.gene006651:CDS |
| CCTCTTGGCAATGTGAGGAA+AGG | 0.605227 | 4.1:-26753176 | MS.gene006651:CDS |
| GGTGGAACGTGTAGTTGGTA+TGG | 0.606573 | 4.1:-26761709 | MS.gene006651:CDS |
| GACTGGACGCGTGCATTCTG+GGG | 0.607427 | 4.1:-26758666 | MS.gene006651:CDS |
| ATGGTTGTAACTGATTGTGC+TGG | 0.608774 | 4.1:-26758141 | MS.gene006651:CDS |
| GAGGCCCTCTTGGCAATGTG+AGG | 0.609090 | 4.1:-26753181 | MS.gene006651:CDS |
| GTTAGGATCGAGTGATGCGG+CGG | 0.610002 | 4.1:+26762818 | None:intergenic |
| TGATTGTTGGAGAACACTCA+CGG | 0.611308 | 4.1:-26752403 | MS.gene006651:CDS |
| ATTAGGTATAAAACTGACAA+GGG | 0.611778 | 4.1:-26755964 | MS.gene006651:intron |
| ATACTAACCAGCATTTGGAA+AGG | 0.616170 | 4.1:+26759102 | None:intergenic |
| TAATGAGCTTAGAAGCTCGC+GGG | 0.618206 | 4.1:-26752958 | MS.gene006651:CDS |
| AAAAGTCATAGATATTGTTG+GGG | 0.618639 | 4.1:+26757328 | None:intergenic |
| TATTAGGTATAAAACTGACA+AGG | 0.620782 | 4.1:-26755965 | MS.gene006651:intron |
| GTGTGGAGGAGTAGAGTGAA+CGG | 0.625565 | 4.1:+26762940 | None:intergenic |
| CCTGGTCACGCCGATTTCGG+TGG | 0.628602 | 4.1:-26762507 | MS.gene006651:CDS |
| CGGCCATACGGTCACTACTG+TGG | 0.628978 | 4.1:-26758073 | MS.gene006651:CDS |
| GGTGAATGAATTTCGTGTGG+AGG | 0.631356 | 4.1:+26762926 | None:intergenic |
| GATTGTTGGAGAACACTCAC+GGG | 0.633744 | 4.1:-26752402 | MS.gene006651:CDS |
| GACCGGCTGCTTCGTCAGTG+CGG | 0.634677 | 4.1:-26762738 | MS.gene006651:CDS |
| GGAAGAGGAGAACTACAGCT+GGG | 0.635038 | 4.1:-26756955 | MS.gene006651:intron |
| CCTCCACAGTAGTGACCGTA+TGG | 0.638729 | 4.1:+26758070 | None:intergenic |
| TTTGTGTACCTGTAGCACCC+AGG | 0.639752 | 4.1:+26759366 | None:intergenic |
| TTAGGATCGAGTGATGCGGC+GGG | 0.641269 | 4.1:+26762819 | None:intergenic |
| GCAAAACTACTCTCATGGAC+CGG | 0.641480 | 4.1:-26762755 | MS.gene006651:CDS |
| AGAGGTGAATGAATTTCGTG+TGG | 0.641996 | 4.1:+26762923 | None:intergenic |
| ACCATCACGACCAGCTAATG+GGG | 0.642706 | 4.1:+26757292 | None:intergenic |
| AATAGAAGAAGTTACAATCG+AGG | 0.643650 | 4.1:-26755926 | MS.gene006651:intron |
| TACTCAGGAGATATGTGATG+AGG | 0.645244 | 4.1:-26759420 | MS.gene006651:CDS |
| GTCATCGCTCATGTCGACCA+CGG | 0.646054 | 4.1:-26762777 | MS.gene006651:CDS |
| GCATGTTGGCTTTGTAATGG+AGG | 0.648522 | 4.1:-26755816 | MS.gene006651:CDS |
| TAGCAGAAGCATAAAGAACA+GGG | 0.649622 | 4.1:+26759244 | None:intergenic |
| TCACGCCGATTTCGGTGGTG+AGG | 0.652597 | 4.1:-26762502 | MS.gene006651:intron |
| CCTTTCCTCACATTGCCAAG+AGG | 0.654681 | 4.1:+26753176 | None:intergenic |
| CCATAAATACATACAAGGCG+AGG | 0.657019 | 4.1:+26752213 | None:intergenic |
| ATGAAGATGAGAAGAAGCGG+GGG | 0.659645 | 4.1:+26762865 | None:intergenic |
| GATGAAGATGAGAAGAAGCG+GGG | 0.660582 | 4.1:+26762864 | None:intergenic |
| ACACACTTCTGTAACCAACC+AGG | 0.662632 | 4.1:+26753607 | None:intergenic |
| AGGATCCTTGGTATATGTGG+TGG | 0.662655 | 4.1:+26759206 | None:intergenic |
| CGATGACGGCGACGTTACGG+AGG | 0.663112 | 4.1:+26762793 | None:intergenic |
| GATGCATACTGAGGAAAGCA+CGG | 0.663890 | 4.1:+26753550 | None:intergenic |
| ATTGCAGGTTAATCCAGTGA+GGG | 0.664090 | 4.1:-26752295 | MS.gene006651:intron |
| GCGGTTAGGATCGAGTGATG+CGG | 0.667937 | 4.1:+26762815 | None:intergenic |
| GGCATCCACCACATATACCA+AGG | 0.670305 | 4.1:-26759211 | MS.gene006651:CDS |
| TAAATACATACAAGGCGAGG+AGG | 0.674179 | 4.1:+26752216 | None:intergenic |
| AGAGCTGAGATTACTGACAT+GGG | 0.682869 | 4.1:-26755779 | MS.gene006651:CDS |
| AGCTTCAGATGAGCTTATCG+AGG | 0.690801 | 4.1:-26751027 | MS.gene006651:intron |
| AGCACAATCAGTTACAACCA+TGG | 0.697858 | 4.1:+26758143 | None:intergenic |
| AATTGCAGGTTAATCCAGTG+AGG | 0.697946 | 4.1:-26752296 | MS.gene006651:intron |
| CCATACGGTCACTACTGTGG+AGG | 0.698786 | 4.1:-26758070 | MS.gene006651:intron |
| GTGTTCAGCAGTGAGACACG+TGG | 0.702692 | 4.1:-26753588 | MS.gene006651:CDS |
| TTAATGAGCTTAGAAGCTCG+CGG | 0.708697 | 4.1:-26752959 | MS.gene006651:CDS |
| TGTGTTTGACTTGTCCATCG+AGG | 0.721796 | 4.1:-26755724 | MS.gene006651:intron |
| AAAGTCATAGATATTGTTGG+GGG | 0.749193 | 4.1:+26757329 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 26749778 | 26762982 | 26749778 | ID=MS.gene006651 |
| chr4.1 | mRNA | 26749778 | 26762982 | 26749778 | ID=MS.gene006651.t1;Parent=MS.gene006651 |
| chr4.1 | exon | 26762662 | 26762982 | 26762662 | ID=MS.gene006651.t1.exon1;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26762662 | 26762982 | 26762662 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26762503 | 26762577 | 26762503 | ID=MS.gene006651.t1.exon2;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26762503 | 26762577 | 26762503 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26761580 | 26761730 | 26761580 | ID=MS.gene006651.t1.exon3;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26761580 | 26761730 | 26761580 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26759375 | 26759443 | 26759375 | ID=MS.gene006651.t1.exon4;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26759375 | 26759443 | 26759375 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26759110 | 26759282 | 26759110 | ID=MS.gene006651.t1.exon5;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26759110 | 26759282 | 26759110 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26758592 | 26758729 | 26758592 | ID=MS.gene006651.t1.exon6;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26758592 | 26758729 | 26758592 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26758071 | 26758196 | 26758071 | ID=MS.gene006651.t1.exon7;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26758071 | 26758196 | 26758071 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26757286 | 26757384 | 26757286 | ID=MS.gene006651.t1.exon8;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26757286 | 26757384 | 26757286 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26756956 | 26757076 | 26756956 | ID=MS.gene006651.t1.exon9;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26756956 | 26757076 | 26756956 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26756801 | 26756864 | 26756801 | ID=MS.gene006651.t1.exon10;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26756801 | 26756864 | 26756801 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26755927 | 26755981 | 26755927 | ID=MS.gene006651.t1.exon11;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26755927 | 26755981 | 26755927 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26755725 | 26755849 | 26755725 | ID=MS.gene006651.t1.exon12;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26755725 | 26755849 | 26755725 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26753559 | 26753632 | 26753559 | ID=MS.gene006651.t1.exon13;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26753559 | 26753632 | 26753559 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26753169 | 26753218 | 26753169 | ID=MS.gene006651.t1.exon14;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26753169 | 26753218 | 26753169 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26752931 | 26753017 | 26752931 | ID=MS.gene006651.t1.exon15;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26752931 | 26753017 | 26752931 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26752388 | 26752438 | 26752388 | ID=MS.gene006651.t1.exon16;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26752388 | 26752438 | 26752388 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26752227 | 26752310 | 26752227 | ID=MS.gene006651.t1.exon17;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26752227 | 26752310 | 26752227 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26751028 | 26751078 | 26751028 | ID=MS.gene006651.t1.exon18;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26751028 | 26751078 | 26751028 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| chr4.1 | exon | 26749778 | 26749861 | 26749778 | ID=MS.gene006651.t1.exon19;Parent=MS.gene006651.t1 |
| chr4.1 | CDS | 26749778 | 26749861 | 26749778 | ID=cds.MS.gene006651.t1;Parent=MS.gene006651.t1 |
| Gene Sequence |
| Protein sequence |