Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007478.t1 | XP_003625563.1 | 98.9 | 268 | 3 | 0 | 1 | 268 | 1 | 268 | 5.70E-148 | 533.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007478.t1 | Q9ZUU1 | 78.2 | 243 | 51 | 2 | 27 | 268 | 43 | 284 | 3.0e-105 | 382.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007478.t1 | G7L1P0 | 98.9 | 268 | 3 | 0 | 1 | 268 | 1 | 268 | 4.1e-148 | 533.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065461 | MS.gene007478 | PPI |
| MS.gene007478 | MS.gene033347 | PPI |
| MS.gene011389 | MS.gene007478 | PPI |
| MS.gene007478 | MS.gene057156 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007478.t1 | MTR_7g100530 | 98.881 | 268 | 3 | 0 | 1 | 268 | 1 | 268 | 0.0 | 543 |
| MS.gene007478.t1 | MTR_1g067050 | 74.476 | 286 | 55 | 4 | 1 | 268 | 1 | 286 | 2.55e-147 | 414 |
| MS.gene007478.t1 | MTR_2g461290 | 34.031 | 191 | 105 | 4 | 43 | 230 | 79 | 251 | 7.34e-27 | 109 |
| MS.gene007478.t1 | MTR_4g103800 | 29.412 | 204 | 122 | 4 | 38 | 234 | 31 | 219 | 4.91e-24 | 97.4 |
| MS.gene007478.t1 | MTR_4g035170 | 30.052 | 193 | 114 | 4 | 43 | 232 | 94 | 268 | 1.73e-20 | 89.0 |
| MS.gene007478.t1 | MTR_4g103800 | 30.714 | 140 | 90 | 2 | 38 | 172 | 31 | 168 | 2.16e-17 | 78.6 |
| MS.gene007478.t1 | MTR_4g035850 | 24.107 | 224 | 125 | 3 | 31 | 252 | 49 | 229 | 9.13e-16 | 75.1 |
| MS.gene007478.t1 | MTR_4g035850 | 24.107 | 224 | 125 | 3 | 31 | 252 | 26 | 206 | 9.95e-16 | 74.3 |
| MS.gene007478.t1 | MTR_5g068940 | 23.361 | 244 | 142 | 3 | 11 | 252 | 6 | 206 | 1.11e-15 | 74.3 |
| MS.gene007478.t1 | MTR_8g009520 | 24.424 | 217 | 122 | 4 | 34 | 249 | 18 | 193 | 1.84e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007478.t1 | AT2G37250 | 70.280 | 286 | 65 | 5 | 1 | 268 | 1 | 284 | 1.51e-138 | 391 |
| MS.gene007478.t1 | AT2G39270 | 71.713 | 251 | 70 | 1 | 18 | 268 | 46 | 295 | 6.93e-118 | 340 |
| MS.gene007478.t1 | AT3G01820 | 36.087 | 230 | 103 | 6 | 34 | 258 | 60 | 250 | 1.40e-37 | 133 |
| MS.gene007478.t1 | AT5G35170 | 33.796 | 216 | 121 | 5 | 18 | 230 | 62 | 258 | 9.34e-30 | 117 |
| MS.gene007478.t1 | AT5G35170 | 33.796 | 216 | 121 | 5 | 18 | 230 | 62 | 258 | 9.56e-30 | 117 |
| MS.gene007478.t1 | AT5G63400 | 31.731 | 208 | 124 | 4 | 38 | 240 | 35 | 229 | 5.93e-27 | 105 |
| MS.gene007478.t1 | AT5G50370 | 31.220 | 205 | 123 | 4 | 38 | 237 | 36 | 227 | 1.55e-26 | 104 |
| MS.gene007478.t1 | AT5G50370 | 31.959 | 194 | 114 | 4 | 38 | 226 | 36 | 216 | 6.67e-25 | 99.4 |
| MS.gene007478.t1 | AT5G47840 | 31.282 | 195 | 110 | 5 | 37 | 228 | 65 | 238 | 8.78e-22 | 92.0 |
| MS.gene007478.t1 | AT5G47840 | 30.457 | 197 | 116 | 4 | 37 | 230 | 65 | 243 | 1.10e-21 | 92.0 |
| MS.gene007478.t1 | AT5G63400 | 34.286 | 140 | 85 | 2 | 38 | 172 | 35 | 172 | 4.44e-21 | 88.2 |
| MS.gene007478.t1 | AT4G25280 | 24.167 | 240 | 137 | 3 | 29 | 266 | 46 | 242 | 1.07e-20 | 89.0 |
| MS.gene007478.t1 | AT4G25280 | 24.167 | 240 | 137 | 3 | 29 | 266 | 46 | 242 | 1.07e-20 | 89.0 |
| MS.gene007478.t1 | AT3G60180 | 26.540 | 211 | 110 | 4 | 28 | 236 | 13 | 180 | 4.47e-18 | 80.5 |
| MS.gene007478.t1 | AT3G60180 | 26.540 | 211 | 110 | 4 | 28 | 236 | 13 | 180 | 4.47e-18 | 80.5 |
| MS.gene007478.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 3.39e-17 | 78.2 |
| MS.gene007478.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 3.39e-17 | 78.2 |
| MS.gene007478.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 3.39e-17 | 78.2 |
| MS.gene007478.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 4.71e-17 | 77.8 |
Find 92 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTTCATCTGACACTAAT+TGG | 0.227977 | 7.1:+8110684 | None:intergenic |
| ATTCTCACCCTTGATGTTAA+TGG | 0.236959 | 7.1:+8110289 | None:intergenic |
| TTCCATGAATCAGGAAATAT+TGG | 0.279986 | 7.1:-8110429 | MS.gene007478:intron |
| TCCACGCGCTAAGGGATAAA+AGG | 0.310626 | 7.1:+8111859 | None:intergenic |
| CTAATGGAGTTTGAGCTTCC+TGG | 0.337802 | 7.1:-8109893 | MS.gene007478:CDS |
| GCGTTTAACAAGGCGGGTTA+TGG | 0.353215 | 7.1:+8111889 | None:intergenic |
| AACAACTTTGGCCAAGATTC+CGG | 0.353841 | 7.1:+8109863 | None:intergenic |
| ACGCGCCACCGCGTGATAAC+AGG | 0.363520 | 7.1:-8111814 | MS.gene007478:CDS |
| GGACAAGCCAAAGGCGAATC+AGG | 0.365095 | 7.1:-8110629 | MS.gene007478:CDS |
| TTGCAAGCAGTGCTTCTTCT+CGG | 0.365762 | 7.1:+8110366 | None:intergenic |
| ACAACTTTGGCCAAGATTCC+GGG | 0.378273 | 7.1:+8109864 | None:intergenic |
| AATGAAACCTGATTCGCCTT+TGG | 0.382130 | 7.1:+8110622 | None:intergenic |
| CGCCATGAGCTTTCCTCCAA+TGG | 0.396544 | 7.1:-8111683 | MS.gene007478:CDS |
| AGGGGAGCCATACTAATTCC+AGG | 0.402077 | 7.1:+8110260 | None:intergenic |
| GAATCAGGTTTCATTCTTGA+TGG | 0.402493 | 7.1:-8110614 | MS.gene007478:CDS |
| TTCTTAGGCTGTCCCGGCGT+TGG | 0.409479 | 7.1:-8111776 | MS.gene007478:CDS |
| AAATGGAACCTGGGAAGAAA+GGG | 0.413958 | 7.1:+8111658 | None:intergenic |
| CGAAGCCTTTCTTTGACTAC+TGG | 0.419226 | 7.1:+8110182 | None:intergenic |
| AAAATGGAACCTGGGAAGAA+AGG | 0.419929 | 7.1:+8111657 | None:intergenic |
| TTCGCCTTTGGCTTGTCCTT+CGG | 0.420172 | 7.1:+8110634 | None:intergenic |
| GCTTCGTATATACAATGAAT+TGG | 0.421380 | 7.1:-8110165 | MS.gene007478:intron |
| CTGGAGGGATCCCGGAATCT+TGG | 0.426061 | 7.1:-8109874 | MS.gene007478:CDS |
| ATTAACATCAAGGGTGAGAA+TGG | 0.438121 | 7.1:-8110287 | MS.gene007478:CDS |
| ACTGCTTGCTTTATTGTTCG+AGG | 0.454143 | 7.1:+8110587 | None:intergenic |
| GTCCAAGCTCATCACTCGTT+CGG | 0.462893 | 7.1:-8110216 | MS.gene007478:CDS |
| TTAAGAGCATGCAACAACTT+TGG | 0.463437 | 7.1:+8109851 | None:intergenic |
| TACAATGCTCAGGAGGAAGC+AGG | 0.474529 | 7.1:+8110240 | None:intergenic |
| GGCTGTCCCGGCGTTGGTAA+AGG | 0.475495 | 7.1:-8111770 | MS.gene007478:CDS |
| CGGTGGCGCGTGAGAATATG+AGG | 0.478955 | 7.1:+8111826 | None:intergenic |
| CCGTAGCCGAGGAAAACTAA+TGG | 0.480423 | 7.1:-8109909 | MS.gene007478:CDS |
| AGCCGCCTCTGCAACCTCCT+CGG | 0.480794 | 7.1:-8111737 | MS.gene007478:CDS |
| GTTGCAGAGGCGGCTGGCGT+AGG | 0.481502 | 7.1:+8111745 | None:intergenic |
| TGTTGCCTCCATTAACATCA+AGG | 0.487139 | 7.1:-8110297 | MS.gene007478:CDS |
| GGAGGAGAATCCACGCGCTA+AGG | 0.487598 | 7.1:+8111850 | None:intergenic |
| CACCGAGGAGGTTGCAGAGG+CGG | 0.490243 | 7.1:+8111735 | None:intergenic |
| GAGCTTGTTGTCTAAGAGAC+TGG | 0.490979 | 7.1:-8110657 | MS.gene007478:CDS |
| CAAGATTCCGGGATCCCTCC+AGG | 0.501896 | 7.1:+8109875 | None:intergenic |
| TGAGCTTCCTGGAGGGATCC+CGG | 0.505662 | 7.1:-8109882 | MS.gene007478:CDS |
| TGGGTGCCCTGGAATTAGTA+TGG | 0.509227 | 7.1:-8110267 | MS.gene007478:CDS |
| CTGAACCAGTAGTCAAAGAA+AGG | 0.515149 | 7.1:-8110187 | MS.gene007478:CDS |
| GAGGAGGTTGCAGAGGCGGC+TGG | 0.516659 | 7.1:+8111739 | None:intergenic |
| AAGGGTGAGAATGGGTGCCC+TGG | 0.527488 | 7.1:-8110278 | MS.gene007478:CDS |
| TGTGGTGCGTTTAACAAGGC+GGG | 0.531626 | 7.1:+8111883 | None:intergenic |
| AGCTTGGACATACAATGCTC+AGG | 0.536250 | 7.1:+8110230 | None:intergenic |
| GGTGTTCCTCACATCGCTAC+CGG | 0.536592 | 7.1:-8111716 | MS.gene007478:CDS |
| GGCCATTGGAGGAAAGCTCA+TGG | 0.538613 | 7.1:+8111681 | None:intergenic |
| CGCGTGAGAATATGAGGAGG+AGG | 0.547324 | 7.1:+8111832 | None:intergenic |
| GGTGACAGACATTGACTTGG+TGG | 0.549406 | 7.1:-8110402 | MS.gene007478:CDS |
| CTCATGGCGAACAAGATCTC+CGG | 0.552425 | 7.1:+8111697 | None:intergenic |
| ACAATGCTCAGGAGGAAGCA+GGG | 0.553118 | 7.1:+8110241 | None:intergenic |
| ATGAATCAGGAAATATTGGA+AGG | 0.560014 | 7.1:-8110425 | MS.gene007478:intron |
| TTAACATCAAGGGTGAGAAT+GGG | 0.564208 | 7.1:-8110286 | MS.gene007478:CDS |
| CTACGGTAAAATCCCTCCAC+AGG | 0.569867 | 7.1:+8109926 | None:intergenic |
| GAATCAGGAAATATTGGAAG+GGG | 0.571838 | 7.1:-8110423 | MS.gene007478:intron |
| CGCTAAGGGATAAAAGGATG+TGG | 0.573069 | 7.1:+8111865 | None:intergenic |
| CTATCAGAAATCGTAAATCA+AGG | 0.576086 | 7.1:-8110707 | MS.gene007478:CDS |
| CTCACCCTTGATGTTAATGG+AGG | 0.585838 | 7.1:+8110292 | None:intergenic |
| ATTGTAGAGTCAACCTGTGG+AGG | 0.587568 | 7.1:-8109939 | MS.gene007478:intron |
| ATCCGAACGAGTGATGAGCT+TGG | 0.590005 | 7.1:+8110214 | None:intergenic |
| TGAATCAGGAAATATTGGAA+GGG | 0.590988 | 7.1:-8110424 | MS.gene007478:intron |
| TAGGTACCTTTACCAACGCC+GGG | 0.591127 | 7.1:+8111764 | None:intergenic |
| CTGGCCGAAGGACAAGCCAA+AGG | 0.598805 | 7.1:-8110638 | MS.gene007478:CDS |
| GACTGCAAGTTCTCCTACCG+AGG | 0.599285 | 7.1:+8110339 | None:intergenic |
| TTGTAGAGTCAACCTGTGGA+GGG | 0.600517 | 7.1:-8109938 | MS.gene007478:intron |
| GCACTGCTTGCAAAATGCCT+CGG | 0.600739 | 7.1:-8110356 | MS.gene007478:CDS |
| GTTGCCTCCATTAACATCAA+GGG | 0.606046 | 7.1:-8110296 | MS.gene007478:CDS |
| GAACACCGAGGAGGTTGCAG+AGG | 0.607957 | 7.1:+8111732 | None:intergenic |
| GAGGAGAATCCACGCGCTAA+GGG | 0.613124 | 7.1:+8111851 | None:intergenic |
| TGATAACAGGAATATTCAGT+GGG | 0.619397 | 7.1:-8111801 | MS.gene007478:CDS |
| GGGGAGCCATACTAATTCCA+GGG | 0.625204 | 7.1:+8110261 | None:intergenic |
| AGGATGTGGTGCGTTTAACA+AGG | 0.626478 | 7.1:+8111879 | None:intergenic |
| CAATGCTCAGGAGGAAGCAG+GGG | 0.629253 | 7.1:+8110242 | None:intergenic |
| GTGATAACAGGAATATTCAG+TGG | 0.631365 | 7.1:-8111802 | MS.gene007478:CDS |
| AATGGAACCTGGGAAGAAAG+GGG | 0.635071 | 7.1:+8111659 | None:intergenic |
| ATGGAGTTTGAGCTTCCTGG+AGG | 0.638339 | 7.1:-8109890 | MS.gene007478:CDS |
| GTAGGTACCTTTACCAACGC+CGG | 0.638576 | 7.1:+8111763 | None:intergenic |
| TGGAGTTTGAGCTTCCTGGA+GGG | 0.640406 | 7.1:-8109889 | MS.gene007478:CDS |
| TGCTTGCAAAATGCCTCGGT+AGG | 0.644240 | 7.1:-8110352 | MS.gene007478:CDS |
| AGAACTTGCAGTCAGTGTGG+AGG | 0.647767 | 7.1:-8110329 | MS.gene007478:CDS |
| TTGTCTAAGAGACTGGCCGA+AGG | 0.649173 | 7.1:-8110650 | MS.gene007478:CDS |
| ATGGAACCTGGGAAGAAAGG+GGG | 0.650436 | 7.1:+8111660 | None:intergenic |
| AGATCTCCGGTAGCGATGTG+AGG | 0.653463 | 7.1:+8111710 | None:intergenic |
| TTGGACATACAATGCTCAGG+AGG | 0.663374 | 7.1:+8110233 | None:intergenic |
| ATATTCCTGTTATCACGCGG+TGG | 0.668275 | 7.1:+8111809 | None:intergenic |
| AGGGGTGACAGACATTGACT+TGG | 0.668576 | 7.1:-8110405 | MS.gene007478:CDS |
| AGGAGAACTTGCAGTCAGTG+TGG | 0.669907 | 7.1:-8110332 | MS.gene007478:CDS |
| ATGTGGTGCGTTTAACAAGG+CGG | 0.679658 | 7.1:+8111882 | None:intergenic |
| ATGATTGTAGAGTCAACCTG+TGG | 0.682094 | 7.1:-8109942 | MS.gene007478:intron |
| TGAATATTCCTGTTATCACG+CGG | 0.715299 | 7.1:+8111806 | None:intergenic |
| CGATGTGAGGAACACCGAGG+AGG | 0.716688 | 7.1:+8111723 | None:intergenic |
| TGGCGCGTGAGAATATGAGG+AGG | 0.729208 | 7.1:+8111829 | None:intergenic |
| TAGCGATGTGAGGAACACCG+AGG | 0.819027 | 7.1:+8111720 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAGGAAAAATAAAA+TGG | + | chr7.1:8110072-8110091 | None:intergenic | 10.0% |
| !!! | AATAATATTAAAACTTTTAG+TGG | + | chr7.1:8110785-8110804 | None:intergenic | 10.0% |
| !!! | TTTTCATTTTGAATAAAAAA+AGG | + | chr7.1:8110085-8110104 | None:intergenic | 10.0% |
| !! | ATTAACAATCATATTGTTTA+AGG | + | chr7.1:8110660-8110679 | None:intergenic | 15.0% |
| !!! | GGACTTTTTATATTAATAAT+AGG | - | chr7.1:8111200-8111219 | MS.gene007478:intron | 15.0% |
| !! | ATAAAAAGTCCTTAAAAACT+AGG | + | chr7.1:8111191-8111210 | None:intergenic | 20.0% |
| !! | CCAAAGCATATAATAATAAA+AGG | + | chr7.1:8110121-8110140 | None:intergenic | 20.0% |
| !!! | CCTTTTATTATTATATGCTT+TGG | - | chr7.1:8110118-8110137 | MS.gene007478:intron | 20.0% |
| !!! | TTTTTGATAATACATAGCAA+TGG | - | chr7.1:8110818-8110837 | MS.gene007478:intron | 20.0% |
| ! | AAATGATGATTGACATTCTA+TGG | - | chr7.1:8110538-8110557 | MS.gene007478:intron | 25.0% |
| ! | CATGTAATAAGCTGTAATTA+TGG | - | chr7.1:8110404-8110423 | MS.gene007478:CDS | 25.0% |
| ! | TAATTTCATCTGACACTAAT+TGG | + | chr7.1:8111029-8111048 | None:intergenic | 25.0% |
| ! | TTAACAATCAGAATTGTTGA+AGG | + | chr7.1:8110520-8110539 | None:intergenic | 25.0% |
| ! | TTTATGTGTCTTCAATACTT+TGG | - | chr7.1:8110321-8110340 | MS.gene007478:CDS | 25.0% |
| !! | ATTATATGCTTTGGTTTAGT+TGG | - | chr7.1:8110127-8110146 | MS.gene007478:intron | 25.0% |
| !! | TGTATTATTTTCCATGAATC+AGG | - | chr7.1:8111272-8111291 | MS.gene007478:intron | 25.0% |
| !! | TTGTTATTGTTGTTGGTTAA+GGG | - | chr7.1:8111596-8111615 | MS.gene007478:intron | 25.0% |
| !!! | TGATATTGATAGCGTAAAAT+GGG | - | chr7.1:8110166-8110185 | MS.gene007478:CDS | 25.0% |
| AACCTATGGCATCTTAATTA+TGG | - | chr7.1:8111625-8111644 | MS.gene007478:intron | 30.0% | |
| AATCTCTGATTCATGTTTCA+TGG | - | chr7.1:8110468-8110487 | MS.gene007478:intron | 30.0% | |
| ACCTATGGCATCTTAATTAT+GGG | - | chr7.1:8111626-8111645 | MS.gene007478:intron | 30.0% | |
| AGGAAAAATAAAATGGAACC+TGG | + | chr7.1:8110065-8110084 | None:intergenic | 30.0% | |
| ATGAATCAGGAAATATTGGA+AGG | - | chr7.1:8111285-8111304 | MS.gene007478:intron | 30.0% | |
| CTATCAGAAATCGTAAATCA+AGG | - | chr7.1:8111003-8111022 | MS.gene007478:intron | 30.0% | |
| GCTTCGTATATACAATGAAT+TGG | - | chr7.1:8111545-8111564 | MS.gene007478:intron | 30.0% | |
| GGAAAAATAAAATGGAACCT+GGG | + | chr7.1:8110064-8110083 | None:intergenic | 30.0% | |
| TGAATCAGGAAATATTGGAA+GGG | - | chr7.1:8111286-8111305 | MS.gene007478:intron | 30.0% | |
| TGATAACAGGAATATTCAGT+GGG | - | chr7.1:8109909-8109928 | MS.gene007478:CDS | 30.0% | |
| TTCCAATATTTCCTGATTCA+TGG | + | chr7.1:8111286-8111305 | None:intergenic | 30.0% | |
| TTCCATGAATCAGGAAATAT+TGG | - | chr7.1:8111281-8111300 | MS.gene007478:intron | 30.0% | |
| ! | ACTGTTGTTGTTATTGTTGT+TGG | - | chr7.1:8111589-8111608 | MS.gene007478:intron | 30.0% |
| ! | ATTGAAGATAGCATGGTTTT+TGG | - | chr7.1:8110897-8110916 | MS.gene007478:intron | 30.0% |
| ! | GTTGTTATTGTTGTTGGTTA+AGG | - | chr7.1:8111595-8111614 | MS.gene007478:intron | 30.0% |
| ! | TGTTATTGTTGTTGGTTAAG+GGG | - | chr7.1:8111597-8111616 | MS.gene007478:intron | 30.0% |
| ! | TTGGACTCATTTGTTAAATC+TGG | - | chr7.1:8110340-8110359 | MS.gene007478:CDS | 30.0% |
| !! | AATATTCAGTGGGTTTTCTT+AGG | - | chr7.1:8109919-8109938 | MS.gene007478:CDS | 30.0% |
| !! | CTGATATTGATAGCGTAAAA+TGG | - | chr7.1:8110165-8110184 | MS.gene007478:intron | 30.0% |
| !!! | AAAATTTGTGCTTTTTCGAC+TGG | - | chr7.1:8110286-8110305 | MS.gene007478:CDS | 30.0% |
| AAGTCCTTAAAAACTAGGAC+AGG | + | chr7.1:8111186-8111205 | None:intergenic | 35.0% | |
| ACAACAGTAACAGTAAGACA+AGG | + | chr7.1:8111577-8111596 | None:intergenic | 35.0% | |
| AGTCCTTAAAAACTAGGACA+GGG | + | chr7.1:8111185-8111204 | None:intergenic | 35.0% | |
| AGTGTGAATTGAAGATAGCA+TGG | - | chr7.1:8110890-8110909 | MS.gene007478:intron | 35.0% | |
| ATTAACATCAAGGGTGAGAA+TGG | - | chr7.1:8111423-8111442 | MS.gene007478:intron | 35.0% | |
| ATTCTCACCCTTGATGTTAA+TGG | + | chr7.1:8111424-8111443 | None:intergenic | 35.0% | |
| CCTATGGCATCTTAATTATG+GGG | - | chr7.1:8111627-8111646 | MS.gene007478:intron | 35.0% | |
| CTATGGCATCTTAATTATGG+GGG | - | chr7.1:8111628-8111647 | MS.gene007478:intron | 35.0% | |
| GAATCAGGAAATATTGGAAG+GGG | - | chr7.1:8111287-8111306 | MS.gene007478:intron | 35.0% | |
| GAATCAGGTTTCATTCTTGA+TGG | - | chr7.1:8111096-8111115 | MS.gene007478:intron | 35.0% | |
| GTGATAACAGGAATATTCAG+TGG | - | chr7.1:8109908-8109927 | MS.gene007478:CDS | 35.0% | |
| TCACACTCACACAAGAATTA+AGG | + | chr7.1:8110877-8110896 | None:intergenic | 35.0% | |
| TCTGGCTATGTAAGAAATCA+TGG | - | chr7.1:8110358-8110377 | MS.gene007478:CDS | 35.0% | |
| TGAATATTCCTGTTATCACG+CGG | + | chr7.1:8109907-8109926 | None:intergenic | 35.0% | |
| TTAACATCAAGGGTGAGAAT+GGG | - | chr7.1:8111424-8111443 | MS.gene007478:intron | 35.0% | |
| TTCATGTTTCATGGTTCAAC+TGG | - | chr7.1:8110477-8110496 | MS.gene007478:intron | 35.0% | |
| TTCCATCGAAAAATGACACA+AGG | - | chr7.1:8111244-8111263 | MS.gene007478:intron | 35.0% | |
| ! | TTAAGAGCATGCAACAACTT+TGG | + | chr7.1:8111862-8111881 | None:intergenic | 35.0% |
| !! | GCGTAAAATGGGTTATTCTA+TGG | - | chr7.1:8110177-8110196 | MS.gene007478:CDS | 35.0% |
| !! | TTTTTCGACTGGCTATGTTT+TGG | - | chr7.1:8110297-8110316 | MS.gene007478:CDS | 35.0% |
| !!! | CAAACTCCATTAGTTTTCCT+CGG | + | chr7.1:8111810-8111829 | None:intergenic | 35.0% |
| !!! | TTCCTTGTGTCATTTTTCGA+TGG | + | chr7.1:8111249-8111268 | None:intergenic | 35.0% |
| AAAATGGAACCTGGGAAGAA+AGG | + | chr7.1:8110056-8110075 | None:intergenic | 40.0% | |
| AAATGGAACCTGGGAAGAAA+GGG | + | chr7.1:8110055-8110074 | None:intergenic | 40.0% | |
| AACAACTTTGGCCAAGATTC+CGG | + | chr7.1:8111850-8111869 | None:intergenic | 40.0% | |
| ATGATTGTAGAGTCAACCTG+TGG | - | chr7.1:8111768-8111787 | MS.gene007478:CDS | 40.0% | |
| CCATCAAAAAGCAGAATGCA+TGG | + | chr7.1:8110685-8110704 | None:intergenic | 40.0% | |
| CCCCATAATTAAGATGCCAT+AGG | + | chr7.1:8111630-8111649 | None:intergenic | 40.0% | |
| CTGAACCAGTAGTCAAAGAA+AGG | - | chr7.1:8111523-8111542 | MS.gene007478:intron | 40.0% | |
| GTCCTTAAAAACTAGGACAG+GGG | + | chr7.1:8111184-8111203 | None:intergenic | 40.0% | |
| GTTGCCTCCATTAACATCAA+GGG | - | chr7.1:8111414-8111433 | MS.gene007478:intron | 40.0% | |
| TGTTGCCTCCATTAACATCA+AGG | - | chr7.1:8111413-8111432 | MS.gene007478:intron | 40.0% | |
| ! | AATGAAACCTGATTCGCCTT+TGG | + | chr7.1:8111091-8111110 | None:intergenic | 40.0% |
| ! | ACTGCTTGCTTTATTGTTCG+AGG | + | chr7.1:8111126-8111145 | None:intergenic | 40.0% |
| ! | CTTGTCACTTATCAGTGTGT+TGG | - | chr7.1:8110441-8110460 | MS.gene007478:intron | 40.0% |
| !! | TCATGGTTCAACTGGTTTGA+TGG | - | chr7.1:8110485-8110504 | MS.gene007478:intron | 40.0% |
| !!! | CCATGCATTCTGCTTTTTGA+TGG | - | chr7.1:8110682-8110701 | MS.gene007478:CDS | 40.0% |
| !!! | CTTTTGTCACTTGTTGTCGT+TGG | - | chr7.1:8110566-8110585 | MS.gene007478:intron | 40.0% |
| AAAAACTAGGACAGGGGTGA+GGG | + | chr7.1:8111178-8111197 | None:intergenic | 45.0% | |
| AATGGAACCTGGGAAGAAAG+GGG | + | chr7.1:8110054-8110073 | None:intergenic | 45.0% | |
| ACAACTTTGGCCAAGATTCC+GGG | + | chr7.1:8111849-8111868 | None:intergenic | 45.0% | |
| AGCTTGGACATACAATGCTC+AGG | + | chr7.1:8111483-8111502 | None:intergenic | 45.0% | |
| AGGATGTGGTGCGTTTAACA+AGG | + | chr7.1:8109834-8109853 | None:intergenic | 45.0% | |
| ATATTCCTGTTATCACGCGG+TGG | + | chr7.1:8109904-8109923 | None:intergenic | 45.0% | |
| ATGTGGTGCGTTTAACAAGG+CGG | + | chr7.1:8109831-8109850 | None:intergenic | 45.0% | |
| ATTGACGCAAATCACGCAGA+TGG | + | chr7.1:8110249-8110268 | None:intergenic | 45.0% | |
| ATTGTAGAGTCAACCTGTGG+AGG | - | chr7.1:8111771-8111790 | MS.gene007478:CDS | 45.0% | |
| CGAAGCCTTTCTTTGACTAC+TGG | + | chr7.1:8111531-8111550 | None:intergenic | 45.0% | |
| CGCTAAGGGATAAAAGGATG+TGG | + | chr7.1:8109848-8109867 | None:intergenic | 45.0% | |
| CTAATGGAGTTTGAGCTTCC+TGG | - | chr7.1:8111817-8111836 | MS.gene007478:CDS | 45.0% | |
| CTCACCCTTGATGTTAATGG+AGG | + | chr7.1:8111421-8111440 | None:intergenic | 45.0% | |
| TAAAAACTAGGACAGGGGTG+AGG | + | chr7.1:8111179-8111198 | None:intergenic | 45.0% | |
| TTGACGCAAATCACGCAGAT+GGG | + | chr7.1:8110248-8110267 | None:intergenic | 45.0% | |
| TTGCAAGCAGTGCTTCTTCT+CGG | + | chr7.1:8111347-8111366 | None:intergenic | 45.0% | |
| TTGGACATACAATGCTCAGG+AGG | + | chr7.1:8111480-8111499 | None:intergenic | 45.0% | |
| TTGTAGAGTCAACCTGTGGA+GGG | - | chr7.1:8111772-8111791 | MS.gene007478:CDS | 45.0% | |
| !! | CACCCCTGTCCTAGTTTTTA+AGG | - | chr7.1:8111179-8111198 | MS.gene007478:intron | 45.0% |
| !! | GAGCTTGTTGTCTAAGAGAC+TGG | - | chr7.1:8111053-8111072 | MS.gene007478:intron | 45.0% |
| !!! | CCATTAGTTTTCCTCGGCTA+CGG | + | chr7.1:8111804-8111823 | None:intergenic | 45.0% |
| !!! | TAATATTATTAATTTTTTTG+AGG | - | chr7.1:8110795-8110814 | MS.gene007478:intron | 5.0% |
| AAAACTAGGACAGGGGTGAG+GGG | + | chr7.1:8111177-8111196 | None:intergenic | 50.0% | |
| ACAATGCTCAGGAGGAAGCA+GGG | + | chr7.1:8111472-8111491 | None:intergenic | 50.0% | |
| AGAACTTGCAGTCAGTGTGG+AGG | - | chr7.1:8111381-8111400 | MS.gene007478:intron | 50.0% | |
| AGGAGAACTTGCAGTCAGTG+TGG | - | chr7.1:8111378-8111397 | MS.gene007478:intron | 50.0% | |
| AGGGGAGCCATACTAATTCC+AGG | + | chr7.1:8111453-8111472 | None:intergenic | 50.0% | |
| ATCCGAACGAGTGATGAGCT+TGG | + | chr7.1:8111499-8111518 | None:intergenic | 50.0% | |
| ATGGAACCTGGGAAGAAAGG+GGG | + | chr7.1:8110053-8110072 | None:intergenic | 50.0% | |
| ATGGAGTTTGAGCTTCCTGG+AGG | - | chr7.1:8111820-8111839 | MS.gene007478:CDS | 50.0% | |
| CCGTAGCCGAGGAAAACTAA+TGG | - | chr7.1:8111801-8111820 | MS.gene007478:CDS | 50.0% | |
| CTACGGTAAAATCCCTCCAC+AGG | + | chr7.1:8111787-8111806 | None:intergenic | 50.0% | |
| CTCATGGCGAACAAGATCTC+CGG | + | chr7.1:8110016-8110035 | None:intergenic | 50.0% | |
| GCACTGCTTGCAAAATGCCT+CGG | - | chr7.1:8111354-8111373 | MS.gene007478:intron | 50.0% | |
| GGGGAGCCATACTAATTCCA+GGG | + | chr7.1:8111452-8111471 | None:intergenic | 50.0% | |
| GTAGGTACCTTTACCAACGC+CGG | + | chr7.1:8109950-8109969 | None:intergenic | 50.0% | |
| GTCCAAGCTCATCACTCGTT+CGG | - | chr7.1:8111494-8111513 | MS.gene007478:intron | 50.0% | |
| GTTAAGGGGACGTGAACCTA+TGG | - | chr7.1:8111611-8111630 | MS.gene007478:intron | 50.0% | |
| TACAATGCTCAGGAGGAAGC+AGG | + | chr7.1:8111473-8111492 | None:intergenic | 50.0% | |
| TAGGTACCTTTACCAACGCC+GGG | + | chr7.1:8109949-8109968 | None:intergenic | 50.0% | |
| TCCACGCGCTAAGGGATAAA+AGG | + | chr7.1:8109854-8109873 | None:intergenic | 50.0% | |
| TGCTTGCAAAATGCCTCGGT+AGG | - | chr7.1:8111358-8111377 | MS.gene007478:intron | 50.0% | |
| TGGAGTTTGAGCTTCCTGGA+GGG | - | chr7.1:8111821-8111840 | MS.gene007478:CDS | 50.0% | |
| TGGGTGCCCTGGAATTAGTA+TGG | - | chr7.1:8111443-8111462 | MS.gene007478:intron | 50.0% | |
| TGTGGTGCGTTTAACAAGGC+GGG | + | chr7.1:8109830-8109849 | None:intergenic | 50.0% | |
| ! | AGGGGTGACAGACATTGACT+TGG | - | chr7.1:8111305-8111324 | MS.gene007478:intron | 50.0% |
| ! | TCCTTTTATCCCTTAGCGCG+TGG | - | chr7.1:8109850-8109869 | MS.gene007478:CDS | 50.0% |
| ! | TGGGTTTTCTTAGGCTGTCC+CGG | - | chr7.1:8109928-8109947 | MS.gene007478:CDS | 50.0% |
| ! | TTGTCTAAGAGACTGGCCGA+AGG | - | chr7.1:8111060-8111079 | MS.gene007478:intron | 50.0% |
| !! | GCGTTTAACAAGGCGGGTTA+TGG | + | chr7.1:8109824-8109843 | None:intergenic | 50.0% |
| !! | GGTGACAGACATTGACTTGG+TGG | - | chr7.1:8111308-8111327 | MS.gene007478:intron | 50.0% |
| !! | TTCGCCTTTGGCTTGTCCTT+CGG | + | chr7.1:8111079-8111098 | None:intergenic | 50.0% |
| AGATCTCCGGTAGCGATGTG+AGG | + | chr7.1:8110003-8110022 | None:intergenic | 55.0% | |
| CAATGCTCAGGAGGAAGCAG+GGG | + | chr7.1:8111471-8111490 | None:intergenic | 55.0% | |
| CGCCATGAGCTTTCCTCCAA+TGG | - | chr7.1:8110027-8110046 | MS.gene007478:intron | 55.0% | |
| CGCGTGAGAATATGAGGAGG+AGG | + | chr7.1:8109881-8109900 | None:intergenic | 55.0% | |
| GACTGCAAGTTCTCCTACCG+AGG | + | chr7.1:8111374-8111393 | None:intergenic | 55.0% | |
| GAGGAGAATCCACGCGCTAA+GGG | + | chr7.1:8109862-8109881 | None:intergenic | 55.0% | |
| GGACAAGCCAAAGGCGAATC+AGG | - | chr7.1:8111081-8111100 | MS.gene007478:intron | 55.0% | |
| GGCCATTGGAGGAAAGCTCA+TGG | + | chr7.1:8110032-8110051 | None:intergenic | 55.0% | |
| GGTGTTCCTCACATCGCTAC+CGG | - | chr7.1:8109994-8110013 | MS.gene007478:intron | 55.0% | |
| TAGCGATGTGAGGAACACCG+AGG | + | chr7.1:8109993-8110012 | None:intergenic | 55.0% | |
| TGGCGCGTGAGAATATGAGG+AGG | + | chr7.1:8109884-8109903 | None:intergenic | 55.0% | |
| ! | GAGGGATTTTACCGTAGCCG+AGG | - | chr7.1:8111790-8111809 | MS.gene007478:CDS | 55.0% |
| AAGGGTGAGAATGGGTGCCC+TGG | - | chr7.1:8111432-8111451 | MS.gene007478:intron | 60.0% | |
| CAAGATTCCGGGATCCCTCC+AGG | + | chr7.1:8111838-8111857 | None:intergenic | 60.0% | |
| CAATGGCCCCCTTTCTTCCC+AGG | - | chr7.1:8110044-8110063 | MS.gene007478:intron | 60.0% | |
| CGATGTGAGGAACACCGAGG+AGG | + | chr7.1:8109990-8110009 | None:intergenic | 60.0% | |
| CGGTGGCGCGTGAGAATATG+AGG | + | chr7.1:8109887-8109906 | None:intergenic | 60.0% | |
| CTGGAGGGATCCCGGAATCT+TGG | - | chr7.1:8111836-8111855 | MS.gene007478:CDS | 60.0% | |
| CTGGCCGAAGGACAAGCCAA+AGG | - | chr7.1:8111072-8111091 | MS.gene007478:intron | 60.0% | |
| CTGGGAAGAAAGGGGGCCAT+TGG | + | chr7.1:8110046-8110065 | None:intergenic | 60.0% | |
| GAACACCGAGGAGGTTGCAG+AGG | + | chr7.1:8109981-8110000 | None:intergenic | 60.0% | |
| GGAAGAAAGGGGGCCATTGG+AGG | + | chr7.1:8110043-8110062 | None:intergenic | 60.0% | |
| GGAGGAGAATCCACGCGCTA+AGG | + | chr7.1:8109863-8109882 | None:intergenic | 60.0% | |
| TGAGCTTCCTGGAGGGATCC+CGG | - | chr7.1:8111828-8111847 | MS.gene007478:CDS | 60.0% | |
| TTCTTAGGCTGTCCCGGCGT+TGG | - | chr7.1:8109934-8109953 | MS.gene007478:CDS | 60.0% | |
| ACGCGCCACCGCGTGATAAC+AGG | - | chr7.1:8109896-8109915 | MS.gene007478:CDS | 65.0% | |
| AGCCGCCTCTGCAACCTCCT+CGG | - | chr7.1:8109973-8109992 | MS.gene007478:intron | 65.0% | |
| CACCGAGGAGGTTGCAGAGG+CGG | + | chr7.1:8109978-8109997 | None:intergenic | 65.0% | |
| !! | GGCTGTCCCGGCGTTGGTAA+AGG | - | chr7.1:8109940-8109959 | MS.gene007478:intron | 65.0% |
| GAGGAGGTTGCAGAGGCGGC+TGG | + | chr7.1:8109974-8109993 | None:intergenic | 70.0% | |
| GTTGCAGAGGCGGCTGGCGT+AGG | + | chr7.1:8109968-8109987 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 8109814 | 8111918 | 8109814 | ID=MS.gene007478 |
| chr7.1 | mRNA | 8109814 | 8111918 | 8109814 | ID=MS.gene007478.t1;Parent=MS.gene007478 |
| chr7.1 | exon | 8111667 | 8111918 | 8111667 | ID=MS.gene007478.t1.exon1;Parent=MS.gene007478.t1 |
| chr7.1 | CDS | 8111667 | 8111918 | 8111667 | ID=cds.MS.gene007478.t1;Parent=MS.gene007478.t1 |
| chr7.1 | exon | 8110589 | 8110729 | 8110589 | ID=MS.gene007478.t1.exon2;Parent=MS.gene007478.t1 |
| chr7.1 | CDS | 8110589 | 8110729 | 8110589 | ID=cds.MS.gene007478.t1;Parent=MS.gene007478.t1 |
| chr7.1 | exon | 8110166 | 8110438 | 8110166 | ID=MS.gene007478.t1.exon3;Parent=MS.gene007478.t1 |
| chr7.1 | CDS | 8110166 | 8110438 | 8110166 | ID=cds.MS.gene007478.t1;Parent=MS.gene007478.t1 |
| chr7.1 | exon | 8109814 | 8109954 | 8109814 | ID=MS.gene007478.t1.exon4;Parent=MS.gene007478.t1 |
| chr7.1 | CDS | 8109814 | 8109954 | 8109814 | ID=cds.MS.gene007478.t1;Parent=MS.gene007478.t1 |
| Gene Sequence |
| Protein sequence |
