AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008179

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008179.t1 MTR_3g067940 98.152 487 1 2 1 487 1 479 0.0 969
MS.gene008179.t1 MTR_4g102510 63.205 443 150 7 48 487 43 475 0.0 548
MS.gene008179.t1 MTR_5g008010 46.353 425 196 9 51 464 26 429 6.23e-120 359
MS.gene008179.t1 MTR_3g051690 44.111 433 208 9 57 474 33 446 1.43e-118 356
MS.gene008179.t1 MTR_7g106870 44.706 425 195 9 57 466 34 433 1.28e-115 348
MS.gene008179.t1 MTR_7g451830 47.590 332 160 5 155 472 92 423 8.82e-104 317
MS.gene008179.t1 MTR_7g047640 47.590 332 160 5 155 472 92 423 8.82e-104 317
MS.gene008179.t1 MTR_7g053100 47.305 334 160 6 159 476 99 432 2.01e-101 311
MS.gene008179.t1 MTR_7g034625 48.065 310 151 4 167 466 13 322 9.20e-101 306
MS.gene008179.t1 MTR_7g057540 42.593 432 208 10 44 464 3 405 3.23e-100 308
MS.gene008179.t1 MTR_7g055590 42.593 432 208 10 44 464 3 405 4.96e-99 307
MS.gene008179.t1 MTR_2g060710 37.838 444 246 10 57 487 26 452 4.05e-97 300
MS.gene008179.t1 MTR_2g100460 35.833 360 187 7 156 487 43 386 2.96e-63 210
MS.gene008179.t1 MTR_2g100540 36.677 319 163 9 162 472 94 381 2.25e-50 177
MS.gene008179.t1 MTR_7g086360 23.113 212 157 3 256 465 48 255 1.75e-14 75.1
MS.gene008179.t1 MTR_5g016370 22.945 292 160 9 186 463 312 552 1.64e-13 73.2
MS.gene008179.t1 MTR_6g453270 37.500 144 36 5 275 418 26 115 1.71e-13 72.4
MS.gene008179.t1 MTR_1g054300 24.521 261 180 10 204 461 235 481 2.07e-13 72.8
MS.gene008179.t1 MTR_6g004040 26.708 161 112 3 219 377 57 213 9.22e-13 71.2
MS.gene008179.t1 MTR_8g038550 24.719 267 183 10 224 481 186 443 1.45e-12 70.5
MS.gene008179.t1 MTR_4g415070 52.830 53 25 0 412 464 55 107 2.31e-12 68.6
MS.gene008179.t1 MTR_3g106080 25.414 181 128 4 200 378 441 616 1.38e-11 67.4
MS.gene008179.t1 MTR_2g086140 27.854 219 115 8 234 413 24 238 2.44e-11 66.6
MS.gene008179.t1 MTR_4g095058 24.000 250 174 9 224 463 292 535 3.64e-11 65.9
MS.gene008179.t1 MTR_1g072140 25.263 190 134 6 275 462 41 224 3.96e-11 64.7
MS.gene008179.t1 MTR_4g095058 24.000 250 174 9 224 463 290 533 4.76e-11 65.5
MS.gene008179.t1 MTR_2g012630 27.094 203 128 6 189 377 16 212 6.00e-11 65.5
MS.gene008179.t1 MTR_2g012630 27.094 203 128 6 189 377 16 212 6.36e-11 65.5
MS.gene008179.t1 MTR_4g119620 25.991 227 133 9 257 462 21 233 7.40e-11 63.9
MS.gene008179.t1 MTR_4g119620 22.800 250 182 6 219 461 76 321 9.11e-11 63.5
MS.gene008179.t1 MTR_5g016350 24.126 286 164 11 186 463 300 540 9.42e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008179.t1 AT5G13840 79.022 491 89 6 1 487 1 481 0.0 726
MS.gene008179.t1 AT5G13840 79.022 491 89 6 1 487 1 481 0.0 726
MS.gene008179.t1 AT4G22910 62.299 435 149 5 56 487 61 483 0.0 546
MS.gene008179.t1 AT4G11920 62.108 446 148 6 48 487 45 475 0.0 528
MS.gene008179.t1 AT4G33260 44.731 427 205 8 49 464 16 422 4.59e-117 352
MS.gene008179.t1 AT4G33270 43.468 444 205 9 49 472 26 443 1.61e-116 350
MS.gene008179.t1 AT5G27570 51.111 315 145 3 159 464 110 424 2.28e-112 340
MS.gene008179.t1 AT4G33260 43.560 427 210 8 49 464 16 422 1.06e-111 338
MS.gene008179.t1 AT5G27080 49.841 315 149 3 159 464 102 416 9.25e-110 333
MS.gene008179.t1 AT5G26900 48.734 316 154 3 157 464 103 418 2.73e-107 326
MS.gene008179.t1 AT5G27945 45.045 333 173 5 141 464 71 402 2.95e-93 290
MS.gene008179.t1 AT5G13480 25.000 296 203 11 198 482 85 372 2.85e-15 79.0
MS.gene008179.t1 AT5G13480 25.000 296 203 11 198 482 108 395 3.73e-15 78.6
MS.gene008179.t1 AT5G13480 25.000 296 203 11 198 482 85 372 3.92e-15 78.6
MS.gene008179.t1 AT5G13480 25.000 296 203 11 198 482 97 384 5.24e-15 78.2
MS.gene008179.t1 AT5G52820 26.848 257 168 10 211 462 231 472 8.48e-15 77.0
MS.gene008179.t1 AT2G43770 22.170 212 159 3 256 465 46 253 2.65e-14 74.7
MS.gene008179.t1 AT2G43770 21.300 277 193 6 202 463 77 343 9.45e-11 63.5
MS.gene008179.t1 AT5G23430 27.528 178 122 4 202 377 41 213 4.12e-14 75.5
MS.gene008179.t1 AT5G23430 27.528 178 122 4 202 377 41 213 4.12e-14 75.5
MS.gene008179.t1 AT5G23430 27.528 178 122 4 202 377 41 213 4.20e-14 75.5
MS.gene008179.t1 AT5G08390 26.966 178 123 4 202 377 41 213 5.42e-14 75.1
MS.gene008179.t1 AT3G49660 25.893 224 135 8 257 463 18 227 8.54e-14 72.8
MS.gene008179.t1 AT3G49660 22.581 248 183 5 219 461 69 312 4.35e-12 67.4
MS.gene008179.t1 AT1G61210 26.257 179 123 5 202 377 40 212 1.92e-12 70.5
MS.gene008179.t1 AT1G61210 26.257 179 123 5 202 377 40 212 2.04e-12 70.5
MS.gene008179.t1 AT1G61210 26.257 179 123 5 202 377 40 212 2.09e-12 70.1
MS.gene008179.t1 AT1G11160 27.933 179 120 5 202 377 40 212 2.86e-12 69.7
MS.gene008179.t1 AT1G11160 27.933 179 120 5 202 377 40 212 2.94e-12 69.7
MS.gene008179.t1 AT1G11160 27.933 179 120 5 202 377 40 212 3.04e-12 69.7
MS.gene008179.t1 AT3G18130 27.344 256 156 8 232 463 74 323 3.49e-12 67.8
MS.gene008179.t1 AT4G35370 26.230 183 87 6 224 380 219 379 5.53e-12 68.2
MS.gene008179.t1 AT1G11160 27.564 156 107 3 224 377 19 170 5.56e-12 68.9
MS.gene008179.t1 AT3G44530 27.313 227 124 7 224 413 16 238 8.81e-12 68.2
MS.gene008179.t1 AT3G44530 27.313 227 124 7 224 413 16 238 9.06e-12 68.2
MS.gene008179.t1 AT5G25150 24.747 198 142 5 193 388 433 625 9.34e-12 67.8
MS.gene008179.t1 AT5G25150 24.747 198 142 5 193 388 433 625 1.07e-11 67.8
MS.gene008179.t1 AT1G15440 28.977 176 119 3 296 469 341 512 2.30e-11 67.0
MS.gene008179.t1 AT1G15440 28.977 176 119 3 296 469 381 552 2.63e-11 66.6
MS.gene008179.t1 AT5G43920 25.140 179 125 3 291 463 211 386 2.87e-11 66.2

Find 144 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTCAACAACCAACTTTA+AGG 0.156117 3.4:-68897031 MS.gene008179:CDS
GGCATGGAATTCTCGCATTT+TGG 0.202786 3.4:-68897421 MS.gene008179:CDS
CTTACCTTGTGGGGCGTCTT+AGG 0.222128 3.4:+68898631 None:intergenic
CTGATCGGTGTATTCGTTTC+TGG 0.223974 3.4:-68896926 MS.gene008179:CDS
GGGATGAGACTCTGCGGTTT+TGG 0.238154 3.4:-68896367 MS.gene008179:CDS
TGCTTATGAATCATCTGATT+TGG 0.243659 3.4:+68896183 None:intergenic
CAAAGGCCTGTATCTTTAAC+TGG 0.271405 3.4:+68896221 None:intergenic
CAGAGCAACCTTCTCGTATC+TGG 0.287630 3.4:-68896960 MS.gene008179:CDS
AATTAGGTTGCAACTCTAAC+TGG 0.295863 3.4:-68896566 MS.gene008179:intron
AATATCGAAGGCAAAGAAAA+AGG 0.329234 3.4:+68898715 None:intergenic
TTGGCACTTGTGTTTATCTC+TGG 0.333779 3.4:-68897820 MS.gene008179:CDS
GCTTATGAATCATCTGATTT+GGG 0.337855 3.4:+68896184 None:intergenic
AGGGTTCCAAGCGACTTTAT+TGG 0.361219 3.4:-68897357 MS.gene008179:CDS
TTCATATCCATTGGTACAAA+TGG 0.382848 3.4:-68897624 MS.gene008179:CDS
TCTCCTTCTTCTTCTCCTGC+AGG 0.390074 3.4:-68898817 MS.gene008179:CDS
TCATTACTCCCTTCTTTAAC+CGG 0.390491 3.4:+68898889 None:intergenic
GACTTTATTGGCAAGCTTGT+CGG 0.390886 3.4:-68897345 MS.gene008179:CDS
TCGATATTTGGAAGAAATGA+TGG 0.394918 3.4:-68898700 MS.gene008179:CDS
TACAAATGGTGGTCAAGTTC+AGG 0.401103 3.4:-68897610 MS.gene008179:intron
TCTTCTTCTCCTGCAGGTTG+TGG 0.401970 3.4:-68898811 MS.gene008179:CDS
GGAACTTTCCTAGGAGGCTT+AGG 0.402674 3.4:+68898652 None:intergenic
CCTTCAACTTGACAGGTTTG+TGG 0.403871 3.4:-68897225 MS.gene008179:intron
TCTCCTGCAGGTTGTGGTGT+AGG 0.409021 3.4:-68898805 MS.gene008179:CDS
GATGACCGGGAACTTGCTTC+TGG 0.413514 3.4:-68897186 MS.gene008179:CDS
GTTATTGTTGACATCCCTGC+TGG 0.415431 3.4:+68899084 None:intergenic
CTCTGTTGACACTGGAAGCC+AGG 0.417288 3.4:-68896877 MS.gene008179:intron
TTCTGGTGGTAATGATAATC+AGG 0.417463 3.4:-68897169 MS.gene008179:intron
GCGCGAGGCGAAGCGGAAGA+AGG 0.417481 3.4:+68899030 None:intergenic
TACCACCAGAAGCAAGTTCC+CGG 0.418042 3.4:+68897181 None:intergenic
TGCAGGTGTGTAACCTTGCT+TGG 0.418904 3.4:-68896776 MS.gene008179:intron
TGTGACTTGGGGCCTTATGA+TGG 0.421524 3.4:-68897681 MS.gene008179:CDS
TGCAATGTCTCCTGATGGTC+AGG 0.422711 3.4:-68896519 MS.gene008179:intron
TTTACTTGAATCTTGTGGAT+TGG 0.423069 3.4:-68897871 MS.gene008179:CDS
GGAGTAATGAGGCTTATAAT+AGG 0.434256 3.4:-68898876 MS.gene008179:CDS
CAGTGTCAACAGAGTTCAAT+TGG 0.437042 3.4:+68896886 None:intergenic
CTACTCCTCCTAAGCCTCCT+AGG 0.441271 3.4:-68898660 MS.gene008179:CDS
CGTTTCTGGAACACGACAAA+TGG 0.442087 3.4:-68896912 MS.gene008179:CDS
GGTAACTAAGCTGTGTGACT+TGG 0.442507 3.4:-68897694 MS.gene008179:CDS
TGCAAGAAGGTCAGAACAAT+GGG 0.442773 3.4:-68897471 MS.gene008179:CDS
GTAACTAAGCTGTGTGACTT+GGG 0.457093 3.4:-68897693 MS.gene008179:CDS
CGCGAGGCGAAGCGGAAGAA+GGG 0.461072 3.4:+68899031 None:intergenic
GATACAGGCCTTTGGTCACT+AGG 0.464727 3.4:-68896212 MS.gene008179:CDS
CAGGCCCCAGTTAAAGATAC+AGG 0.466060 3.4:-68896227 MS.gene008179:CDS
GAAGAAGGAGAAGCAAAATC+AGG 0.474147 3.4:+68898829 None:intergenic
AGGAACCCTCCTTGGTCCAC+TGG 0.476755 3.4:+68897646 None:intergenic
CAGACAATAGTGACTGGTGC+TGG 0.478559 3.4:-68896389 MS.gene008179:CDS
GGAGGGCATCAAACAAGAAC+CGG 0.479441 3.4:-68897450 MS.gene008179:CDS
AATAATACCTTTGCTAGTGA+TGG 0.483310 3.4:+68896684 None:intergenic
TCAAACAAGAACCGGTGTCT+TGG 0.489887 3.4:-68897442 MS.gene008179:CDS
TCCCTTCTTTAACCGGTGAC+TGG 0.494990 3.4:+68898896 None:intergenic
GACAGGTTTGTGGATTGAAA+TGG 0.496996 3.4:-68897215 MS.gene008179:intron
TTGACCACCATTTGTACCAA+TGG 0.497202 3.4:+68897617 None:intergenic
TCTTCAAGACTGCATACATT+CGG 0.497264 3.4:-68898931 MS.gene008179:CDS
AGCAAGTTCCCGGTCATCAC+AGG 0.498721 3.4:+68897191 None:intergenic
TGGACATTTACCTGACCATC+AGG 0.498898 3.4:+68896509 None:intergenic
GGATATGAAGGAACCCTCCT+TGG 0.504932 3.4:+68897638 None:intergenic
TGGCTTCAGGAAGCAGGGAT+AGG 0.505574 3.4:-68897401 MS.gene008179:CDS
CAGTTAAAGATACAGGCCTT+TGG 0.507215 3.4:-68896220 MS.gene008179:CDS
TCAGGTCTAAACCTCCCAGC+AGG 0.508097 3.4:-68899099 MS.gene008179:CDS
GAGGGTTCCTTCATATCCAT+TGG 0.508547 3.4:-68897633 MS.gene008179:CDS
AGCTTGCCAATAAAGTCGCT+TGG 0.510546 3.4:+68897351 None:intergenic
AACCAGTCACCGGTTAAAGA+AGG 0.514252 3.4:-68898898 MS.gene008179:CDS
ATTTGTACCAATGGATATGA+AGG 0.514939 3.4:+68897626 None:intergenic
AACCTCAACATATTCTTACT+CGG 0.518937 3.4:+68898766 None:intergenic
TGAAATGGTCCTGTGATGAC+CGG 0.522032 3.4:-68897200 MS.gene008179:CDS
CGATATTTGGAAGAAATGAT+GGG 0.526164 3.4:-68898699 MS.gene008179:CDS
TATATGAGCAGCTATTGGTA+TGG 0.528902 3.4:-68897061 MS.gene008179:intron
ACTTTCCTAGGAGGCTTAGG+AGG 0.531462 3.4:+68898655 None:intergenic
TGAATCATCTGATTTGGGTG+CGG 0.533378 3.4:+68896189 None:intergenic
TAAAAGTCATCTTGAAGTGA+AGG 0.536272 3.4:+68897890 None:intergenic
CAAGAACCGGTGTCTTGGCA+TGG 0.537570 3.4:-68897437 MS.gene008179:CDS
TATGAATCTGTCACTACACT+TGG 0.538788 3.4:+68898966 None:intergenic
GAATCTGTCACTACACTTGG+AGG 0.541099 3.4:+68898969 None:intergenic
CTGCTGTGAAAGCCATTGCT+TGG 0.542537 3.4:-68896992 MS.gene008179:CDS
ACAGAACAGACACCATCATA+AGG 0.543861 3.4:+68897669 None:intergenic
GGCGTCTTAGGAACTTTCCT+AGG 0.547742 3.4:+68898643 None:intergenic
GAATATGTTGAGGTTTAAGA+CGG 0.551632 3.4:-68898758 MS.gene008179:CDS
TTACTCACAAAATCAAATCA+TGG 0.552909 3.4:-68896718 MS.gene008179:CDS
CAACCTGCAGGAGAAGAAGA+AGG 0.554584 3.4:+68898814 None:intergenic
AGGTTTAAGACGGAGAGTTG+TGG 0.557810 3.4:-68898748 MS.gene008179:CDS
CACAAAATCAAATCATGGTG+TGG 0.560137 3.4:-68896713 MS.gene008179:CDS
TTATTGTTGACATCCCTGCT+GGG 0.562161 3.4:+68899085 None:intergenic
GAAATATCCATCACTAGCAA+AGG 0.565549 3.4:-68896691 MS.gene008179:intron
AATACTCTAGCAGTTGGACT+TGG 0.567179 3.4:-68897839 MS.gene008179:CDS
ATGCAAGAAGGTCAGAACAA+TGG 0.567203 3.4:-68897472 MS.gene008179:CDS
AACCTTCTCGTATCTGGAGG+TGG 0.572049 3.4:-68896954 MS.gene008179:CDS
TCTGTCCAGTGGACCAAGGA+GGG 0.572876 3.4:-68897651 MS.gene008179:CDS
TGCTCTGTAAGCCTTAAAGT+TGG 0.578838 3.4:+68897020 None:intergenic
ATGGAGAGGGTGTTGATGAG+AGG 0.580002 3.4:+68898998 None:intergenic
ACCAGTCACCGGTTAAAGAA+GGG 0.584887 3.4:-68898897 MS.gene008179:CDS
TCACAAAATACTCTAGCAGT+TGG 0.586601 3.4:-68897845 MS.gene008179:CDS
ACGAGAAGGTTGCTCTGATG+AGG 0.586636 3.4:+68896966 None:intergenic
ATGGTGTCTGTTCTGTCCAG+TGG 0.586950 3.4:-68897662 MS.gene008179:CDS
AAAGGCCTGTATCTTTAACT+GGG 0.587939 3.4:+68896222 None:intergenic
GAACCTACACCACAACCTGC+AGG 0.589197 3.4:+68898802 None:intergenic
AGACAATAGTGACTGGTGCT+GGG 0.590497 3.4:-68896388 MS.gene008179:CDS
CAATTGAACTCTGTTGACAC+TGG 0.590791 3.4:-68896885 MS.gene008179:CDS
TTGTGGTGTAGGTTCGCCAT+TGG 0.591222 3.4:-68898794 MS.gene008179:CDS
CTGGAGGTGGAACTGCTGAT+CGG 0.593470 3.4:-68896941 MS.gene008179:CDS
TCATTTCTTCCAAATATCGA+AGG 0.594666 3.4:+68898703 None:intergenic
GACCATCAGGAGACATTGCA+AGG 0.595767 3.4:+68896522 None:intergenic
TTCTTACTCGGACTCACCAA+TGG 0.595792 3.4:+68898778 None:intergenic
ATATCCATTGGTACAAATGG+TGG 0.598496 3.4:-68897621 MS.gene008179:CDS
GTCTTAGGAACTTTCCTAGG+AGG 0.599352 3.4:+68898646 None:intergenic
TACCTTGCAATGTCTCCTGA+TGG 0.601989 3.4:-68896524 MS.gene008179:CDS
TTATGGTAACAGATTTGGGA+TGG 0.603590 3.4:-68897501 MS.gene008179:intron
GCGAGGCGAAGCGGAAGAAG+GGG 0.607095 3.4:+68899032 None:intergenic
GAAATGGTCCTGTGATGACC+GGG 0.607983 3.4:-68897199 MS.gene008179:CDS
TTGATAGCGTTTCTAGACGG+AGG 0.608364 3.4:+68899058 None:intergenic
GTGTTGATAGCGTTTCTAGA+CGG 0.610679 3.4:+68899055 None:intergenic
CTGTTCTGTCCAGTGGACCA+AGG 0.611176 3.4:-68897655 MS.gene008179:CDS
TTCTGTCCAGTGGACCAAGG+AGG 0.616102 3.4:-68897652 MS.gene008179:CDS
CAATTGCAGACAATAGTGAC+TGG 0.618146 3.4:-68896395 MS.gene008179:intron
TGAGATCGCGCGAGGCGAAG+CGG 0.618949 3.4:+68899023 None:intergenic
GGATGGTACTAAATGCAAGA+AGG 0.620237 3.4:-68897484 MS.gene008179:CDS
TAACTAAGCTGTGTGACTTG+GGG 0.621200 3.4:-68897692 MS.gene008179:CDS
CTGATGAGGTGACCAAGCAA+TGG 0.623695 3.4:+68896980 None:intergenic
AGCAACCTTCTCGTATCTGG+AGG 0.630408 3.4:-68896957 MS.gene008179:CDS
TGATAGCGTTTCTAGACGGA+GGG 0.630489 3.4:+68899059 None:intergenic
TAGCGTTTCTAGACGGAGGG+AGG 0.631148 3.4:+68899062 None:intergenic
GGGTGCGGCCTAGTGACCAA+AGG 0.631232 3.4:+68896204 None:intergenic
TGTCAACAGAGTTCAATTGG+TGG 0.632166 3.4:+68896889 None:intergenic
CAGGTCTAAACCTCCCAGCA+GGG 0.636073 3.4:-68899098 MS.gene008179:CDS
ACATACTTCAGCATGACATG+AGG 0.639225 3.4:-68897377 MS.gene008179:CDS
TTGTTGACATCCCTGCTGGG+AGG 0.640070 3.4:+68899088 None:intergenic
TTCCACCTCCAGATACGAGA+AGG 0.640711 3.4:+68896952 None:intergenic
AGAATTCCATGCCAAGACAC+CGG 0.640925 3.4:+68897431 None:intergenic
ATTAATCGATAACCAGTCAC+CGG 0.643856 3.4:-68898908 MS.gene008179:CDS
AGTTCCTAAGACGCCCCACA+AGG 0.646840 3.4:-68898635 MS.gene008179:intron
AAGAAGGTCAGAACAATGGG+AGG 0.649698 3.4:-68897468 MS.gene008179:CDS
CGAGGCGAAGCGGAAGAAGG+GGG 0.655782 3.4:+68899033 None:intergenic
GACAATAGTGACTGGTGCTG+GGG 0.659564 3.4:-68896387 MS.gene008179:CDS
CATACTTCAGCATGACATGA+GGG 0.660026 3.4:-68897376 MS.gene008179:CDS
AGAAGGTCAGAACAATGGGA+GGG 0.662939 3.4:-68897467 MS.gene008179:CDS
GAGAGGTTTGAGATCGCGCG+AGG 0.662959 3.4:+68899015 None:intergenic
GGTTAAAGAAGGGAGTAATG+AGG 0.665035 3.4:-68898887 MS.gene008179:CDS
GACCGGGAACTTGCTTCTGG+TGG 0.665213 3.4:-68897183 MS.gene008179:CDS
GTCCGAGTAAGAATATGTTG+AGG 0.666814 3.4:-68898768 MS.gene008179:CDS
AATGAGCTAGTGAGTACACA+TGG 0.668243 3.4:-68896741 MS.gene008179:CDS
GGTATAGTACTCTCATGCTG+TGG 0.672992 3.4:+68896543 None:intergenic
GCTTGTCGGCCACAAATCCG+AGG 0.677734 3.4:-68897331 MS.gene008179:intron
AGTCTTGAAGATGATCTGCA+AGG 0.682253 3.4:+68898943 None:intergenic
AAGGCCTGTATCTTTAACTG+GGG 0.685695 3.4:+68896223 None:intergenic
GTGCTGGGGATGAGACTCTG+CGG 0.730545 3.4:-68896373 MS.gene008179:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGATGTAAAAATTAA+GGG + chr3.4:68898882-68898901 None:intergenic 10.0%
!! TAAAATTGATGTAAAAATTA+AGG + chr3.4:68898883-68898902 None:intergenic 10.0%
!! TAATTAAGAAAAATTTCATA+TGG + chr3.4:68898735-68898754 None:intergenic 10.0%
!! TTGTTTATGATATAATAATA+GGG + chr3.4:68898848-68898867 None:intergenic 10.0%
!! TTTGTTTATGATATAATAAT+AGG + chr3.4:68898849-68898868 None:intergenic 10.0%
!!! ATATGAAATTTTTCTTAATT+AGG - chr3.4:68898734-68898753 MS.gene008179:CDS 10.0%
!! AATATGCAATAATTGAAAAT+TGG + chr3.4:68899020-68899039 None:intergenic 15.0%
!! TCAAAAAATTTACACAAAAA+CGG + chr3.4:68896732-68896751 None:intergenic 15.0%
!!! ATTTTATTGTATTTGAGAAT+TGG - chr3.4:68896767-68896786 MS.gene008179:CDS 15.0%
!!! TTTTATTGTATTTGAGAATT+GGG - chr3.4:68896768-68896787 MS.gene008179:CDS 15.0%
!! AGTTACAATCATTAATATTG+CGG - chr3.4:68897063-68897082 MS.gene008179:intron 20.0%
!! TATGTAAGTTATGAAATTGA+TGG - chr3.4:68898058-68898077 MS.gene008179:intron 20.0%
!!! ACAAATTAATTGTGATTTTG+AGG - chr3.4:68896980-68896999 MS.gene008179:CDS 20.0%
!!! ACTTGATAATCATTTCTAAT+TGG + chr3.4:68898692-68898711 None:intergenic 20.0%
!!! ATATTGATTCTTCAAAAAAG+AGG + chr3.4:68898477-68898496 None:intergenic 20.0%
!!! ATTAGGATTTTCTACAATTA+GGG + chr3.4:68897187-68897206 None:intergenic 20.0%
!!! CACAATTAATTTGTAAAACT+AGG + chr3.4:68896974-68896993 None:intergenic 20.0%
!!! TATTTAATGCATAATTTTGC+AGG - chr3.4:68898523-68898542 MS.gene008179:intron 20.0%
! AAAGATAAAAACTTACCTTG+TGG + chr3.4:68896699-68896718 None:intergenic 25.0%
! AACATAAGAAACTGTTATGT+TGG - chr3.4:68897145-68897164 MS.gene008179:intron 25.0%
! AAGATAAAAACTTACCTTGT+GGG + chr3.4:68896698-68896717 None:intergenic 25.0%
! AATTGTAGAAAATCCTAATC+TGG - chr3.4:68897188-68897207 MS.gene008179:CDS 25.0%
! ATACTAAACAGATAGATAGA+AGG + chr3.4:68898196-68898215 None:intergenic 25.0%
! ATTGAACATATATCTTTGTG+TGG - chr3.4:68897593-68897612 MS.gene008179:intron 25.0%
! CAAAGTTTAAGTATTTGAGA+GGG - chr3.4:68897289-68897308 MS.gene008179:intron 25.0%
! TAATCAAATCCTACAAATCA+AGG + chr3.4:68896809-68896828 None:intergenic 25.0%
! TTACTCACAAAATCAAATCA+TGG - chr3.4:68898598-68898617 MS.gene008179:intron 25.0%
!! GATTAGGATTTTCTACAATT+AGG + chr3.4:68897188-68897207 None:intergenic 25.0%
!! TTGTTGAAATCTGAACTTTT+TGG - chr3.4:68896463-68896482 MS.gene008179:intron 25.0%
!!! AAAGTGTATATCGATTTTGT+AGG - chr3.4:68896834-68896853 MS.gene008179:intron 25.0%
!!! AACTCTTTTAAATCTAGAGT+TGG + chr3.4:68897241-68897260 None:intergenic 25.0%
!!! ACAATTAGGGTTTTAAATAG+AGG + chr3.4:68897174-68897193 None:intergenic 25.0%
!!! TTGATTTGTAGGATTTGATT+AGG - chr3.4:68896808-68896827 MS.gene008179:intron 25.0%
AAAACTAGGATTGTCATGAT+TGG + chr3.4:68896960-68896979 None:intergenic 30.0%
AACCTCAACATATTCTTACT+CGG + chr3.4:68896553-68896572 None:intergenic 30.0%
AATAATACCTTTGCTAGTGA+TGG + chr3.4:68898635-68898654 None:intergenic 30.0%
AATATCGAAGGCAAAGAAAA+AGG + chr3.4:68896604-68896623 None:intergenic 30.0%
AATCAACTCATAACCAGATT+AGG + chr3.4:68897204-68897223 None:intergenic 30.0%
AGATAAAAACTTACCTTGTG+GGG + chr3.4:68896697-68896716 None:intergenic 30.0%
ATTTGTACCAATGGATATGA+AGG + chr3.4:68897693-68897712 None:intergenic 30.0%
CAAATCAAAGTAAGCTAACA+AGG + chr3.4:68897734-68897753 None:intergenic 30.0%
CAATCATCAAATCAAACACA+TGG + chr3.4:68897767-68897786 None:intergenic 30.0%
CCAAAGTTTAAGTATTTGAG+AGG - chr3.4:68897288-68897307 MS.gene008179:intron 30.0%
CCTCTCAAATACTTAAACTT+TGG + chr3.4:68897291-68897310 None:intergenic 30.0%
CGATATTTGGAAGAAATGAT+GGG - chr3.4:68896617-68896636 MS.gene008179:intron 30.0%
CTGAAGCAAAAAGAAAAGTT+AGG + chr3.4:68899072-68899091 None:intergenic 30.0%
GAATATGTTGAGGTTTAAGA+CGG - chr3.4:68896558-68896577 MS.gene008179:CDS 30.0%
TAAAAGTCATCTTGAAGTGA+AGG + chr3.4:68897429-68897448 None:intergenic 30.0%
TAGGGAATTATGTTGTTATG+TGG + chr3.4:68898830-68898849 None:intergenic 30.0%
TATGCTATGACTCTATCTTA+GGG + chr3.4:68896895-68896914 None:intergenic 30.0%
TCATTTCTTCCAAATATCGA+AGG + chr3.4:68896616-68896635 None:intergenic 30.0%
TCGATATTTGGAAGAAATGA+TGG - chr3.4:68896616-68896635 MS.gene008179:intron 30.0%
TTCATATCCATTGGTACAAA+TGG - chr3.4:68897692-68897711 MS.gene008179:CDS 30.0%
TTTACTTGAATCTTGTGGAT+TGG - chr3.4:68897445-68897464 MS.gene008179:CDS 30.0%
! CTAACTTTTCTTTTTGCTTC+AGG - chr3.4:68899070-68899089 MS.gene008179:CDS 30.0%
! CTTGTTAGCTTACTTTGATT+TGG - chr3.4:68897732-68897751 MS.gene008179:intron 30.0%
! GAGAATTGGGTTAGATAATA+TGG - chr3.4:68896781-68896800 MS.gene008179:intron 30.0%
! GAGTTCTTTTAAGCAATACT+AGG + chr3.4:68899048-68899067 None:intergenic 30.0%
! GTCAAATGGTTTTTATACCT+CGG + chr3.4:68898005-68898024 None:intergenic 30.0%
! TATATCTTTGTGTGGTTTTC+AGG - chr3.4:68897601-68897620 MS.gene008179:intron 30.0%
! TGACTTTTACTTGAATCTTG+TGG - chr3.4:68897440-68897459 MS.gene008179:CDS 30.0%
! TGTTTTATATGAGCAGCTAT+TGG - chr3.4:68898250-68898269 MS.gene008179:intron 30.0%
! TTACAGGTGTTTTCATTGAT+GGG + chr3.4:68898983-68899002 None:intergenic 30.0%
! TTACATTTTTACTCCAAGCA+AGG + chr3.4:68898556-68898575 None:intergenic 30.0%
! TTTTCTTTGCCTTCGATATT+TGG - chr3.4:68896604-68896623 MS.gene008179:intron 30.0%
! TTTTTATCCTTCAACTTGAC+AGG - chr3.4:68898084-68898103 MS.gene008179:intron 30.0%
!! AATATGGTACCTTGATTTGT+AGG - chr3.4:68896797-68896816 MS.gene008179:intron 30.0%
!!! AAATGATGGGTTTTGTAATG+AGG - chr3.4:68896630-68896649 MS.gene008179:intron 30.0%
!!! AATGATGGGTTTTGTAATGA+GGG - chr3.4:68896631-68896650 MS.gene008179:intron 30.0%
AAAGGCCTGTATCTTTAACT+GGG + chr3.4:68899097-68899116 None:intergenic 35.0%
AAGAGGTAAGAAAGTAAACC+TGG + chr3.4:68898460-68898479 None:intergenic 35.0%
ACTCTCAACAACCAACTTTA+AGG - chr3.4:68898285-68898304 MS.gene008179:intron 35.0%
ATATCCATTGGTACAAATGG+TGG - chr3.4:68897695-68897714 MS.gene008179:CDS 35.0%
ATCCCAAATCTGTTACCATA+AGG + chr3.4:68897816-68897835 None:intergenic 35.0%
ATGACTCTATCTTAGGGTTT+AGG + chr3.4:68896889-68896908 None:intergenic 35.0%
ATGATTATGAACTTCCCAAG+TGG - chr3.4:68897543-68897562 MS.gene008179:intron 35.0%
ATTAATCGATAACCAGTCAC+CGG - chr3.4:68896408-68896427 MS.gene008179:intron 35.0%
CACAAAATCAAATCATGGTG+TGG - chr3.4:68898603-68898622 MS.gene008179:intron 35.0%
CTATGCTATGACTCTATCTT+AGG + chr3.4:68896896-68896915 None:intergenic 35.0%
GAAATATCCATCACTAGCAA+AGG - chr3.4:68898625-68898644 MS.gene008179:intron 35.0%
GGAGTAATGAGGCTTATAAT+AGG - chr3.4:68896440-68896459 MS.gene008179:intron 35.0%
GTCATTACAACGTAAGACTA+GGG - chr3.4:68897017-68897036 MS.gene008179:CDS 35.0%
TATATGAGCAGCTATTGGTA+TGG - chr3.4:68898255-68898274 MS.gene008179:intron 35.0%
TATGAATCTGTCACTACACT+TGG + chr3.4:68896353-68896372 None:intergenic 35.0%
TCACAAAATACTCTAGCAGT+TGG - chr3.4:68897471-68897490 MS.gene008179:CDS 35.0%
TCACCACAAGCAAAAAAATC+AGG - chr3.4:68896199-68896218 MS.gene008179:CDS 35.0%
TCATTACTCCCTTCTTTAAC+CGG + chr3.4:68896430-68896449 None:intergenic 35.0%
TCTTCAAGACTGCATACATT+CGG - chr3.4:68896385-68896404 MS.gene008179:CDS 35.0%
TGATAAGATGCTCTCTTGTT+TGG + chr3.4:68898500-68898519 None:intergenic 35.0%
TGCCTTATGGTAACAGATTT+GGG - chr3.4:68897811-68897830 MS.gene008179:CDS 35.0%
TGTCATTACAACGTAAGACT+AGG - chr3.4:68897016-68897035 MS.gene008179:CDS 35.0%
TTATGGTAACAGATTTGGGA+TGG - chr3.4:68897815-68897834 MS.gene008179:CDS 35.0%
TTGCCTTATGGTAACAGATT+TGG - chr3.4:68897810-68897829 MS.gene008179:CDS 35.0%
! AATTAGGTTGCAACTCTAAC+TGG - chr3.4:68898750-68898769 MS.gene008179:CDS 35.0%
! CTTACAGGTGTTTTCATTGA+TGG + chr3.4:68898984-68899003 None:intergenic 35.0%
! GTTTTTATACCTCGGATTTG+TGG + chr3.4:68897997-68898016 None:intergenic 35.0%
! TTCTGGTGGTAATGATAATC+AGG - chr3.4:68898147-68898166 MS.gene008179:intron 35.0%
! TTGTGATATTGTTGCCACTT+GGG + chr3.4:68897560-68897579 None:intergenic 35.0%
!! AACTGCTAGAGTATTTTGTG+AGG + chr3.4:68897472-68897491 None:intergenic 35.0%
!!! AAGACTAGGGTTTTAAATGG+AGG - chr3.4:68897030-68897049 MS.gene008179:CDS 35.0%
!!! AAGAGAGCTTTTTTGCCTTA+TGG - chr3.4:68897798-68897817 MS.gene008179:intron 35.0%
!!! AGACCTGATTTTTTTGCTTG+TGG + chr3.4:68896205-68896224 None:intergenic 35.0%
!!! CGTAAGACTAGGGTTTTAAA+TGG - chr3.4:68897027-68897046 MS.gene008179:CDS 35.0%
AAGGCCTGTATCTTTAACTG+GGG + chr3.4:68899096-68899115 None:intergenic 40.0%
AATACTCTAGCAGTTGGACT+TGG - chr3.4:68897477-68897496 MS.gene008179:CDS 40.0%
AATGAGCTAGTGAGTACACA+TGG - chr3.4:68898575-68898594 MS.gene008179:intron 40.0%
ACAGAACAGACACCATCATA+AGG + chr3.4:68897650-68897669 None:intergenic 40.0%
ACATACTTCAGCATGACATG+AGG - chr3.4:68897939-68897958 MS.gene008179:intron 40.0%
AGTCTTGAAGATGATCTGCA+AGG + chr3.4:68896376-68896395 None:intergenic 40.0%
AGTGAGTGAGACAGTGTATA+AGG - chr3.4:68896921-68896940 MS.gene008179:CDS 40.0%
ATGCAAGAAGGTCAGAACAA+TGG - chr3.4:68897844-68897863 MS.gene008179:CDS 40.0%
CAAAGGCCTGTATCTTTAAC+TGG + chr3.4:68899098-68899117 None:intergenic 40.0%
CAATTGAACTCTGTTGACAC+TGG - chr3.4:68898431-68898450 MS.gene008179:intron 40.0%
CAATTGCAGACAATAGTGAC+TGG - chr3.4:68898921-68898940 MS.gene008179:CDS 40.0%
CAGTGTCAACAGAGTTCAAT+TGG + chr3.4:68898433-68898452 None:intergenic 40.0%
CAGTTAAAGATACAGGCCTT+TGG - chr3.4:68899096-68899115 MS.gene008179:CDS 40.0%
CATACTTCAGCATGACATGA+GGG - chr3.4:68897940-68897959 MS.gene008179:intron 40.0%
CTCAATGCGTATCTGTCAAA+TGG + chr3.4:68898019-68898038 None:intergenic 40.0%
GAAGAAGGAGAAGCAAAATC+AGG + chr3.4:68896490-68896509 None:intergenic 40.0%
GACTTTATTGGCAAGCTTGT+CGG - chr3.4:68897971-68897990 MS.gene008179:intron 40.0%
GGATGGTACTAAATGCAAGA+AGG - chr3.4:68897832-68897851 MS.gene008179:CDS 40.0%
GGTTAAAGAAGGGAGTAATG+AGG - chr3.4:68896429-68896448 MS.gene008179:intron 40.0%
GTAACTAAGCTGTGTGACTT+GGG - chr3.4:68897623-68897642 MS.gene008179:CDS 40.0%
GTCCGAGTAAGAATATGTTG+AGG - chr3.4:68896548-68896567 MS.gene008179:CDS 40.0%
GTTGTGATATTGTTGCCACT+TGG + chr3.4:68897561-68897580 None:intergenic 40.0%
TAACTAAGCTGTGTGACTTG+GGG - chr3.4:68897624-68897643 MS.gene008179:CDS 40.0%
TACAAATGGTGGTCAAGTTC+AGG - chr3.4:68897706-68897725 MS.gene008179:intron 40.0%
TGCAAGAAGGTCAGAACAAT+GGG - chr3.4:68897845-68897864 MS.gene008179:CDS 40.0%
TGCTCTGTAAGCCTTAAAGT+TGG + chr3.4:68898299-68898318 None:intergenic 40.0%
TGTCAACAGAGTTCAATTGG+TGG + chr3.4:68898430-68898449 None:intergenic 40.0%
TTATTGTTGACATCCCTGCT+GGG + chr3.4:68896234-68896253 None:intergenic 40.0%
TTGACCACCATTTGTACCAA+TGG + chr3.4:68897702-68897721 None:intergenic 40.0%
TTGGCACTTGTGTTTATCTC+TGG - chr3.4:68897496-68897515 MS.gene008179:intron 40.0%
! CTACACTTGGAGGATTTTGA+TGG + chr3.4:68896340-68896359 None:intergenic 40.0%
! GACAGGTTTGTGGATTGAAA+TGG - chr3.4:68898101-68898120 MS.gene008179:intron 40.0%
!! GTGTTGATAGCGTTTCTAGA+CGG + chr3.4:68896264-68896283 None:intergenic 40.0%
!! TTGGAGGATTTTGATGGAGA+GGG + chr3.4:68896334-68896353 None:intergenic 40.0%
!!! AATTCTCGCATTTTGGCTTC+AGG - chr3.4:68897902-68897921 MS.gene008179:CDS 40.0%
AAGAAGGTCAGAACAATGGG+AGG - chr3.4:68897848-68897867 MS.gene008179:CDS 45.0%
AAGGAAGCAATTGTGTCTGC+TGG + chr3.4:68898177-68898196 None:intergenic 45.0%
AGAAGGTCAGAACAATGGGA+GGG - chr3.4:68897849-68897868 MS.gene008179:CDS 45.0%
AGAATTCCATGCCAAGACAC+CGG + chr3.4:68897888-68897907 None:intergenic 45.0%
AGACAATAGTGACTGGTGCT+GGG - chr3.4:68898928-68898947 MS.gene008179:CDS 45.0%
AGCTTGCCAATAAAGTCGCT+TGG + chr3.4:68897968-68897987 None:intergenic 45.0%
AGGGTTCCAAGCGACTTTAT+TGG - chr3.4:68897959-68897978 MS.gene008179:intron 45.0%
CCTTCAACTTGACAGGTTTG+TGG - chr3.4:68898091-68898110 MS.gene008179:intron 45.0%
CTGATCGGTGTATTCGTTTC+TGG - chr3.4:68898390-68898409 MS.gene008179:intron 45.0%
GAATCTGTCACTACACTTGG+AGG + chr3.4:68896350-68896369 None:intergenic 45.0%
GAGGGTTCCTTCATATCCAT+TGG - chr3.4:68897683-68897702 MS.gene008179:CDS 45.0%
GGCAAAGAAAAAGGCGAAGA+AGG + chr3.4:68896595-68896614 None:intergenic 45.0%
GGTAACTAAGCTGTGTGACT+TGG - chr3.4:68897622-68897641 MS.gene008179:CDS 45.0%
GGTATAGTACTCTCATGCTG+TGG + chr3.4:68898776-68898795 None:intergenic 45.0%
GTCTTAGGAACTTTCCTAGG+AGG + chr3.4:68896673-68896692 None:intergenic 45.0%
GTTATTGTTGACATCCCTGC+TGG + chr3.4:68896235-68896254 None:intergenic 45.0%
TACCTTGCAATGTCTCCTGA+TGG - chr3.4:68898792-68898811 MS.gene008179:CDS 45.0%
TCAAACAAGAACCGGTGTCT+TGG - chr3.4:68897874-68897893 MS.gene008179:CDS 45.0%
TGAAATGGTCCTGTGATGAC+CGG - chr3.4:68898116-68898135 MS.gene008179:intron 45.0%
TGATGCGACGTGAAAATCAG+TGG - chr3.4:68897107-68897126 MS.gene008179:intron 45.0%
TGGACATTTACCTGACCATC+AGG + chr3.4:68898810-68898829 None:intergenic 45.0%
TTCTTACTCGGACTCACCAA+TGG + chr3.4:68896541-68896560 None:intergenic 45.0%
! AACCAGTCACCGGTTAAAGA+AGG - chr3.4:68896418-68896437 MS.gene008179:intron 45.0%
! ACCAGTCACCGGTTAAAGAA+GGG - chr3.4:68896419-68896438 MS.gene008179:intron 45.0%
! AGGTTTAAGACGGAGAGTTG+TGG - chr3.4:68896568-68896587 MS.gene008179:intron 45.0%
! CACCTGTAAGCATTGCATTG+TGG - chr3.4:68898994-68899013 MS.gene008179:CDS 45.0%
! GGCATGGAATTCTCGCATTT+TGG - chr3.4:68897895-68897914 MS.gene008179:CDS 45.0%
! TGATAGCGTTTCTAGACGGA+GGG + chr3.4:68896260-68896279 None:intergenic 45.0%
!! CCACAAACCTGTCAAGTTGA+AGG + chr3.4:68898094-68898113 None:intergenic 45.0%
!! CGTTTCTGGAACACGACAAA+TGG - chr3.4:68898404-68898423 MS.gene008179:intron 45.0%
!! CTTGGAGGATTTTGATGGAG+AGG + chr3.4:68896335-68896354 None:intergenic 45.0%
!! TTGATAGCGTTTCTAGACGG+AGG + chr3.4:68896261-68896280 None:intergenic 45.0%
!!! AGGGTTTTAAATGGAGGTCG+CGG - chr3.4:68897036-68897055 MS.gene008179:CDS 45.0%
!!! CATTTTGGCTTCAGGAAGCA+GGG - chr3.4:68897910-68897929 MS.gene008179:intron 45.0%
AACCTTCTCGTATCTGGAGG+TGG - chr3.4:68898362-68898381 MS.gene008179:intron 50.0%
ACGAGAAGGTTGCTCTGATG+AGG + chr3.4:68898353-68898372 None:intergenic 50.0%
ACTTTCCTAGGAGGCTTAGG+AGG + chr3.4:68896664-68896683 None:intergenic 50.0%
AGCAACCTTCTCGTATCTGG+AGG - chr3.4:68898359-68898378 MS.gene008179:intron 50.0%
ATGGTGTCTGTTCTGTCCAG+TGG - chr3.4:68897654-68897673 MS.gene008179:CDS 50.0%
CAACCTGCAGGAGAAGAAGA+AGG + chr3.4:68896505-68896524 None:intergenic 50.0%
CAGACAATAGTGACTGGTGC+TGG - chr3.4:68898927-68898946 MS.gene008179:CDS 50.0%
CAGAGCAACCTTCTCGTATC+TGG - chr3.4:68898356-68898375 MS.gene008179:intron 50.0%
CAGGCCCCAGTTAAAGATAC+AGG - chr3.4:68899089-68899108 MS.gene008179:CDS 50.0%
CTGATGAGGTGACCAAGCAA+TGG + chr3.4:68898339-68898358 None:intergenic 50.0%
CTGCTGTGAAAGCCATTGCT+TGG - chr3.4:68898324-68898343 MS.gene008179:intron 50.0%
GAAATGGTCCTGTGATGACC+GGG - chr3.4:68898117-68898136 MS.gene008179:intron 50.0%
GACCATCAGGAGACATTGCA+AGG + chr3.4:68898797-68898816 None:intergenic 50.0%
GATACAGGCCTTTGGTCACT+AGG - chr3.4:68899104-68899123 MS.gene008179:CDS 50.0%
GGAACTTTCCTAGGAGGCTT+AGG + chr3.4:68896667-68896686 None:intergenic 50.0%
GGATATGAAGGAACCCTCCT+TGG + chr3.4:68897681-68897700 None:intergenic 50.0%
GGCCACAATGCAATGCTTAC+AGG + chr3.4:68898999-68899018 None:intergenic 50.0%
GGCGTCTTAGGAACTTTCCT+AGG + chr3.4:68896676-68896695 None:intergenic 50.0%
TACCACCAGAAGCAAGTTCC+CGG + chr3.4:68898138-68898157 None:intergenic 50.0%
TCCCTTCTTTAACCGGTGAC+TGG + chr3.4:68896423-68896442 None:intergenic 50.0%
TCTCCTTCTTCTTCTCCTGC+AGG - chr3.4:68896499-68896518 MS.gene008179:intron 50.0%
TCTTCTTCTCCTGCAGGTTG+TGG - chr3.4:68896505-68896524 MS.gene008179:intron 50.0%
TGCAATGTCTCCTGATGGTC+AGG - chr3.4:68898797-68898816 MS.gene008179:CDS 50.0%
TGCAGGTGTGTAACCTTGCT+TGG - chr3.4:68898540-68898559 MS.gene008179:intron 50.0%
TTCCACCTCCAGATACGAGA+AGG + chr3.4:68898367-68898386 None:intergenic 50.0%
TTGTGGTGTAGGTTCGCCAT+TGG - chr3.4:68896522-68896541 MS.gene008179:CDS 50.0%
! GACAATAGTGACTGGTGCTG+GGG - chr3.4:68898929-68898948 MS.gene008179:CDS 50.0%
! TGTGACTTGGGGCCTTATGA+TGG - chr3.4:68897635-68897654 MS.gene008179:CDS 50.0%
!! ATGGAGAGGGTGTTGATGAG+AGG + chr3.4:68896321-68896340 None:intergenic 50.0%
!! GGAGGGCATCAAACAAGAAC+CGG - chr3.4:68897866-68897885 MS.gene008179:CDS 50.0%
!!! GCATTTTGGCTTCAGGAAGC+AGG - chr3.4:68897909-68897928 MS.gene008179:intron 50.0%
AGCAAGTTCCCGGTCATCAC+AGG + chr3.4:68898128-68898147 None:intergenic 55.0%
AGTTCCTAAGACGCCCCACA+AGG - chr3.4:68896681-68896700 MS.gene008179:intron 55.0%
CAAGAACCGGTGTCTTGGCA+TGG - chr3.4:68897879-68897898 MS.gene008179:CDS 55.0%
CAGGTCTAAACCTCCCAGCA+GGG - chr3.4:68896218-68896237 MS.gene008179:CDS 55.0%
CTACTCCTCCTAAGCCTCCT+AGG - chr3.4:68896656-68896675 MS.gene008179:intron 55.0%
CTCTGTTGACACTGGAAGCC+AGG - chr3.4:68898439-68898458 MS.gene008179:intron 55.0%
CTGGAGGTGGAACTGCTGAT+CGG - chr3.4:68898375-68898394 MS.gene008179:intron 55.0%
CTGTGTGCAATGCTGTGTGC+AGG - chr3.4:68897392-68897411 MS.gene008179:CDS 55.0%
CTGTTCTGTCCAGTGGACCA+AGG - chr3.4:68897661-68897680 MS.gene008179:CDS 55.0%
GAACCTACACCACAACCTGC+AGG + chr3.4:68896517-68896536 None:intergenic 55.0%
GCAATGCTGTGTGCAGGTTC+TGG - chr3.4:68897398-68897417 MS.gene008179:CDS 55.0%
TCAGGTCTAAACCTCCCAGC+AGG - chr3.4:68896217-68896236 MS.gene008179:CDS 55.0%
TCTCCTGCAGGTTGTGGTGT+AGG - chr3.4:68896511-68896530 MS.gene008179:intron 55.0%
TCTGTCCAGTGGACCAAGGA+GGG - chr3.4:68897665-68897684 MS.gene008179:CDS 55.0%
TGGCTTCAGGAAGCAGGGAT+AGG - chr3.4:68897915-68897934 MS.gene008179:intron 55.0%
TTCTGTCCAGTGGACCAAGG+AGG - chr3.4:68897664-68897683 MS.gene008179:CDS 55.0%
TTGTTGACATCCCTGCTGGG+AGG + chr3.4:68896231-68896250 None:intergenic 55.0%
! CTTACCTTGTGGGGCGTCTT+AGG + chr3.4:68896688-68896707 None:intergenic 55.0%
! GATGACCGGGAACTTGCTTC+TGG - chr3.4:68898130-68898149 MS.gene008179:intron 55.0%
! GGGATGAGACTCTGCGGTTT+TGG - chr3.4:68898949-68898968 MS.gene008179:CDS 55.0%
! TAGCGTTTCTAGACGGAGGG+AGG + chr3.4:68896257-68896276 None:intergenic 55.0%
AGGAACCCTCCTTGGTCCAC+TGG + chr3.4:68897673-68897692 None:intergenic 60.0%
GCTTGTCGGCCACAAATCCG+AGG - chr3.4:68897985-68898004 MS.gene008179:intron 60.0%
GTGCTGGGGATGAGACTCTG+CGG - chr3.4:68898943-68898962 MS.gene008179:CDS 60.0%
! GACCGGGAACTTGCTTCTGG+TGG - chr3.4:68898133-68898152 MS.gene008179:intron 60.0%
! GAGAGGTTTGAGATCGCGCG+AGG + chr3.4:68896304-68896323 None:intergenic 60.0%
CGAGGCGAAGCGGAAGAAGG+GGG + chr3.4:68896286-68896305 None:intergenic 65.0%
CGCGAGGCGAAGCGGAAGAA+GGG + chr3.4:68896288-68896307 None:intergenic 65.0%
GCGAGGCGAAGCGGAAGAAG+GGG + chr3.4:68896287-68896306 None:intergenic 65.0%
GGGTGCGGCCTAGTGACCAA+AGG + chr3.4:68899115-68899134 None:intergenic 65.0%
TGAGATCGCGCGAGGCGAAG+CGG + chr3.4:68896296-68896315 None:intergenic 65.0%
GCGCGAGGCGAAGCGGAAGA+AGG + chr3.4:68896289-68896308 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 68896193 68899145 68896193 ID=MS.gene008179
chr3.4 mRNA 68896193 68899145 68896193 ID=MS.gene008179.t1;Parent=MS.gene008179
chr3.4 exon 68898636 68899145 68898636 ID=MS.gene008179.t1.exon1;Parent=MS.gene008179.t1
chr3.4 CDS 68898636 68899145 68898636 ID=cds.MS.gene008179.t1;Parent=MS.gene008179.t1
chr3.4 exon 68897802 68897924 68897802 ID=MS.gene008179.t1.exon2;Parent=MS.gene008179.t1
chr3.4 CDS 68897802 68897924 68897802 ID=cds.MS.gene008179.t1;Parent=MS.gene008179.t1
chr3.4 exon 68897611 68897715 68897611 ID=MS.gene008179.t1.exon3;Parent=MS.gene008179.t1
chr3.4 CDS 68897611 68897715 68897611 ID=cds.MS.gene008179.t1;Parent=MS.gene008179.t1
chr3.4 exon 68897332 68897511 68897332 ID=MS.gene008179.t1.exon4;Parent=MS.gene008179.t1
chr3.4 CDS 68897332 68897511 68897332 ID=cds.MS.gene008179.t1;Parent=MS.gene008179.t1
chr3.4 exon 68897170 68897232 68897170 ID=MS.gene008179.t1.exon5;Parent=MS.gene008179.t1
chr3.4 CDS 68897170 68897232 68897170 ID=cds.MS.gene008179.t1;Parent=MS.gene008179.t1
chr3.4 exon 68896878 68897072 68896878 ID=MS.gene008179.t1.exon6;Parent=MS.gene008179.t1
chr3.4 CDS 68896878 68897072 68896878 ID=cds.MS.gene008179.t1;Parent=MS.gene008179.t1
chr3.4 exon 68896692 68896793 68896692 ID=MS.gene008179.t1.exon7;Parent=MS.gene008179.t1
chr3.4 CDS 68896692 68896793 68896692 ID=cds.MS.gene008179.t1;Parent=MS.gene008179.t1
chr3.4 exon 68896520 68896582 68896520 ID=MS.gene008179.t1.exon8;Parent=MS.gene008179.t1
chr3.4 CDS 68896520 68896582 68896520 ID=cds.MS.gene008179.t1;Parent=MS.gene008179.t1
chr3.4 exon 68896340 68896408 68896340 ID=MS.gene008179.t1.exon9;Parent=MS.gene008179.t1
chr3.4 CDS 68896340 68896408 68896340 ID=cds.MS.gene008179.t1;Parent=MS.gene008179.t1
chr3.4 exon 68896193 68896246 68896193 ID=MS.gene008179.t1.exon10;Parent=MS.gene008179.t1
chr3.4 CDS 68896193 68896246 68896193 ID=cds.MS.gene008179.t1;Parent=MS.gene008179.t1
Gene Sequence

>MS.gene008179

ATGGAGTCACCACAAGCAAAAAAATCAGGTCTAAACCTCCCAGCAGGGATGTCAACAATAACCTCCCTCCGTCTAGAAACGCTATCAACACCCCCTTCTTCCGCTTCGCCTCGCGCGATCTCAAACCTCTCATCAACACCCTCTCCATCAAAATCCTCCAAGTGTAGTGACAGATTCATACCTTGCAGATCATCTTCAAGACTGCATACATTCGGATTAATCGATAACCAGTCACCGGTTAAAGAAGGGAGTAATGAGGCTTATAATAGGTTGTTGAAATCTGAACTTTTTGGACCTGATTTTGCTTCTCCTTCTTCTTCTCCTGCAGGTTGTGGTGTAGGTTCGCCATTGGTGAGTCCGAGTAAGAATATGTTGAGGTTTAAGACGGAGAGTTGTGGACCTTCTTCGCCTTTTTCTTTGCCTTCGATATTTGGAAGAAATGATGGGTTTTGTAATGAGGGTTCTACTCCTCCTAAGCCTCCTAGGAAAGTTCCTAAGACGCCCCACAAGGTAAGTTTTTATCTTTTTCTCTTTTACCGTTTTTGTGTAAATTTTTTGAACATGAAATTGTTTTATTTTATTGTATTTGAGAATTGGGTTAGATAATATGGTACCTTGATTTGTAGGATTTGATTAGGTCTAAAGTGTATATCGATTTTGTAGGATATAGTTAGTTAGTTAGTTACACTTACACCTAAACCCTAAGATAGAGTCATAGCATAGCTCTTAGTGAGTGAGACAGTGTATAAGGAAATGCTCAATTTCCAATCATGACAATCCTAGTTTTACAAATTAATTGTGATTTTGAGGTAGACTCGAGCTGTGTCATTACAACGTAAGACTAGGGTTTTAAATGGAGGTCGCGGTAACAGTTACAATCATTAATATTGCGGAAAATTGTAGTCAAATGCAGCTGATGCGACGTGAAAATCAGTGGCATTGCAATTTCGAAAACATAAGAAACTGTTATGTTGGCAACCTCTATTTAAAACCCTAATTGTAGAAAATCCTAATCTGGTTATGAGTTGATTAAAGTTGAGTTTTTCCAACTCTAGATTTAAAAGAGTTTGTGCATGTACATTTCAAGTTCTAAAACCAAAGTTTAAGTATTTGAGAGGGTCTGTCTTTGATACAATAGACAAAAAATTCTTAGAGCTAATAATGATTGTTGAATGTTGATTTTCTAAAATTGAGCAATGCTGTGTGCAATGCTGTGTGCAGGTTCTGGATGCTCCTTCACTTCAAGATGACTTTTACTTGAATCTTGTGGATTGGTCCTCACAAAATACTCTAGCAGTTGGACTTGGCACTTGTGTTTATCTCTGGAGTGCTTCAAACAGCAAAGTGAGTATGATTATGAACTTCCCAAGTGGCAACAATATCACAACATGTACAATCAAATTGAACATATATCTTTGTGTGGTTTTCAGGTAACTAAGCTGTGTGACTTGGGGCCTTATGATGGTGTCTGTTCTGTCCAGTGGACCAAGGAGGGTTCCTTCATATCCATTGGTACAAATGGTGGTCAAGTTCAGGTACCTTGTTAGCTTACTTTGATTTGGTTTTATCATCCATGTGTTTGATTTGATGATTGAGAATAACAATAAGAGAGCTTTTTTGCCTTATGGTAACAGATTTGGGATGGTACTAAATGCAAGAAGGTCAGAACAATGGGAGGGCATCAAACAAGAACCGGTGTCTTGGCATGGAATTCTCGCATTTTGGCTTCAGGAAGCAGGGATAGGAACATACTTCAGCATGACATGAGGGTTCCAAGCGACTTTATTGGCAAGCTTGTCGGCCACAAATCCGAGGTATAAAAACCATTTGACAGATACGCATTGAGCTAGTCATAAGATCAATTGTATGTAAGTTATGAAATTGATGGTAATTTTTATCCTTCAACTTGACAGGTTTGTGGATTGAAATGGTCCTGTGATGACCGGGAACTTGCTTCTGGTGGTAATGATAATCAGGTATGCCAGCAGACACAATTGCTTCCTTCTATCTATCTGTTTAGTATTTTTCGTGAGATTTAATTCATCAATTTGATGTCATGTTTTATATGAGCAGCTATTGGTATGGAATCAGCACTCTCAACAACCAACTTTAAGGCTTACAGAGCACACTGCTGCTGTGAAAGCCATTGCTTGGTCACCTCATCAGAGCAACCTTCTCGTATCTGGAGGTGGAACTGCTGATCGGTGTATTCGTTTCTGGAACACGACAAATGGCCACCAATTGAACTCTGTTGACACTGGAAGCCAGGTTTACTTTCTTACCTCTTTTTTGAAGAATCAATATCCAAACAAGAGAGCATCTTATCAAACTATTTAATGCATAATTTTGCAGGTGTGTAACCTTGCTTGGAGTAAAAATGTAAATGAGCTAGTGAGTACACATGGTTACTCACAAAATCAAATCATGGTGTGGAAATATCCATCACTAGCAAAGGTATTATTTTACATTGAGAATTCTAGATATTTTAGACATATTCCAATTAGAAATGATTATCAAGTATAAAATTAAAATGTCTTAACCATATGAAATTTTTCTTAATTAGGTTGCAACTCTAACTGGCCACAGCATGAGAGTACTATACCTTGCAATGTCTCCTGATGGTCAGGTAAATGTCCACATAACAACATAATTCCCTATTATTATATCATAAACAAAAACAAATTGTCCCTTAATTTTTACATCAATTTTAATGTAATGCTGAATAATACAATTGCAGACAATAGTGACTGGTGCTGGGGATGAGACTCTGCGGTTTTGGAATGTTTTCCCATCAATGAAAACACCTGTAAGCATTGCATTGTGGCCAATTTTCAATTATTGCATATTATGTTCCTAGTATTGCTTAAAAGAACTCTCCTAACTTTTCTTTTTGCTTCAGGCCCCAGTTAAAGATACAGGCCTTTGGTCACTAGGCCGCACCCAAATCAGATGA
Protein sequence

>MS.gene008179.t1

MESPQAKKSGLNLPAGMSTITSLRLETLSTPPSSASPRAISNLSSTPSPSKSSKCSDRFIPCRSSSRLHTFGLIDNQSPVKEGSNEAYNRLLKSELFGPDFASPSSSPAGCGVGSPLVSPSKNMLRFKTESCGPSSPFSLPSIFGRNDGFCNEGSTPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNTLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTKEGSFISIGTNGGQVQIWDGTKCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVPSDFIGKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTPAPVKDTGLWSLGRTQIR