AlfalfaGEDB | MS.gene008434

M. sativa cultivar XinJiangDaYe / MS.gene008434

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008434.t1	XP_024635525.1	97.7	652	14	1	2	652	14	665	1.40E-264	922.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008434.t1	Q9LVM0	70.5	638	183	3	15	650	19	653	1.3e-189	664.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008434.t1	G7IV47	97.7	652	14	1	2	652	9	660	1.0e-264	922.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene008434	MS.gene047025	PPI
MS.gene008434	MS.gene047026	PPI
MS.gene008434	MS.gene93732	PPI
MS.gene040093	MS.gene008434	PPI

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene008434.t1	MTR_3g062500	97.546	652	15	1	2	652	9	660	1301
MS.gene008434.t1	MTR_3g062500	97.538	650	15	1	4	652	1	650	1296
MS.gene008434.t1	MTR_5g075630	77.223	641	139	4	12	652	18	651	978
MS.gene008434.t1	MTR_3g093710	60.905	619	233	4	36	652	24	635	761
MS.gene008434.t1	MTR_7g073710	60.427	609	226	5	27	631	12	609	716
MS.gene008434.t1	MTR_5g068210	57.800	609	222	7	26	630	12	589	671
MS.gene008434.t1	MTR_8g099195	51.691	621	279	10	26	640	3	608	630
MS.gene008434.t1	MTR_3g090660	50.396	631	283	8	26	652	7	611	607
MS.gene008434.t1	MTR_4g113100	52.540	630	261	11	44	652	30	642	595
MS.gene008434.t1	MTR_5g009660	49.757	617	262	9	27	640	13	584	578

Showing 1 to 10 of 798 entries

Previous1 2 3 4 5…80Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008434.t1	AT5G58300	67.341	643	195	4	15	650	19	653	0.0	863
MS.gene008434.t1	AT5G58300	67.341	643	195	4	15	650	19	653	0.0	863
MS.gene008434.t1	AT5G58300	67.341	643	195	4	15	650	19	653	0.0	863
MS.gene008434.t1	AT3G08680	60.372	646	225	10	24	649	6	640	0.0	749
MS.gene008434.t1	AT3G08680	60.372	646	225	10	24	649	6	640	0.0	749
MS.gene008434.t1	AT5G05160	56.406	640	241	12	23	640	10	633	0.0	694
MS.gene008434.t1	AT2G26730	53.333	645	272	13	27	652	11	645	0.0	622
MS.gene008434.t1	AT4G23740	48.243	626	295	12	37	647	22	633	0.0	575
MS.gene008434.t1	AT4G23740	48.243	626	295	12	37	647	22	633	0.0	575
MS.gene008434.t1	AT1G48480	46.019	628	285	17	40	629	32	643	3.72e-173	509

Showing 1 to 10 of 741 entries

Previous1 2 3 4 5…75Next

Find 183 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAGGGTCCTGGTGC+GGG	0.439340	3.3:-56706146	MS.gene008434:CDS
AAAGCACCTCTCCAATCTCC+TGG	0.523631	3.3:-56705021	MS.gene008434:CDS
AAAGGAGTTTGATCAGCAGA+TGG	0.571119	3.3:-56705886	MS.gene008434:CDS
AAATAATTGCTATGACAAAA+AGG	0.316670	3.3:+56706990	None:intergenic
AAATCAAGTACAATTAGTTG+AGG	0.643882	3.3:+56706608	None:intergenic
AAATCAGATGTCTATAGCTT+TGG	0.449861	3.3:-56705072	MS.gene008434:CDS
AAATGCAGCCGTCGTTATCT+TGG	0.425878	3.3:+56705196	None:intergenic
AAATTTAGAGTTAACTTTGT+TGG	0.397007	3.3:+56707051	None:intergenic
AACCCAAGATGTACAGATTG+AGG	0.562148	3.3:+56706868	None:intergenic
AACCTTTCCACACTCTTGCA+TGG	0.510481	3.3:-56705759	MS.gene008434:intron

Showing 1 to 10 of 183 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACATCTCAGAAATCTTAC+AGG	+	chr3.3:56707359-56707378	None:intergenic	30.0%
AAATCAGATGTCTATAGCTT+TGG	-	chr3.3:56707935-56707954	MS.gene008434:intron	30.0%
ACGAATTAGGATAAACTTGA+AGG	+	chr3.3:56706599-56706618	None:intergenic	30.0%
ATATTTCCATGTGCGAATTT+GGG	+	chr3.3:56707767-56707786	None:intergenic	30.0%
ATTAGGTATACTTCCAGATA+GGG	+	chr3.3:56706508-56706527	None:intergenic	30.0%
CAATGTTTAAAAAACCGAAC+TGG	+	chr3.3:56707533-56707552	None:intergenic	30.0%
CCAAAACATTGAAGAAGAAA+TGG	-	chr3.3:56708102-56708121	MS.gene008434:intron	30.0%
CGAATTAGGATAAACTTGAA+GGG	+	chr3.3:56706598-56706617	None:intergenic	30.0%
CTCCAAAAGTAAATTGAGTA+AGG	-	chr3.3:56706728-56706747	MS.gene008434:CDS	30.0%
CTTTACTGAATTGTCTTCTT+TGG	-	chr3.3:56705506-56705525	MS.gene008434:intron	30.0%

Showing 1 to 10 of 278 entries

Previous1 2 3 4 5…28Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	56704738	56708291	56704738	ID=MS.gene008434
chr3.3	mRNA	56704738	56708291	56704738	ID=MS.gene008434.t1;Parent=MS.gene008434
chr3.3	exon	56708289	56708291	56708289	ID=MS.gene008434.t1.exon1;Parent=MS.gene008434.t1
chr3.3	CDS	56708289	56708291	56708289	ID=cds.MS.gene008434.t1;Parent=MS.gene008434.t1
chr3.3	exon	56705760	56707086	56705760	ID=MS.gene008434.t1.exon2;Parent=MS.gene008434.t1
chr3.3	CDS	56705760	56707086	56705760	ID=cds.MS.gene008434.t1;Parent=MS.gene008434.t1
chr3.3	exon	56704738	56705366	56704738	ID=MS.gene008434.t1.exon3;Parent=MS.gene008434.t1
chr3.3	CDS	56704738	56705366	56704738	ID=cds.MS.gene008434.t1;Parent=MS.gene008434.t1

Gene Sequence

>MS.gene008434

ATGGTATACTTTAATTCCACATGCAGATCTGGGTTGTTTGAATTTTGTTAAAAAAAAGTGTTTTTCAACAATGAGGACTAAAATTTGCTTCAAAGCATTTTTGGGTTTTTTTTTTCTGATGCTAAATTGTTGTGTTTTGAGAAATTGGGTTGTGAAATTTTTTAGGATCTGAAATTACTTGTAGAGAAAGATTTTAATTTTTTTTTCCTTAATTAGTTGTTGAACTACTTTGAACTGTTTCTCATTTTGTAATTTCCTTCCTAATTCATTAAATGGAAGTGTAAATTTGAAGACAATTTTGGTTATTTATTATTAGCTCAATAAGTTCAATGTAGAATTTGAGGTTCCTTTTTTCTGTTGGTTGATGGTTGGTTAGAAAATTATCTGTTTCTATGAATAAACTGCAGAAATGTTAGTTCAATTTAACAAACTGTTTATGAAGTTACCAAAAGTTTTAATCTTAATTTTATGGTGAAATGTTATCCTTTCATTGACTTTCCTCTCACTTTCCTCTTCTATCAAAATCTTTGATTTTTTTGTTGTTCATGAATCATAGTATCTTTCTTTGAACAGTAGAAAAACTTGATTCTCTTTCTATAGCTTAACCTTTTTACTATAGTTGTTTAGTACTATCTCTTTTAACCAAGTACTGTTCCTTTCCTTTGTTGCTTAAGCTTTCAACAATCATCATTTTCACCTTTGAGTACTCTTTGTAATTGCATTGCAGCTATGATTTAGGTATAGACATGCTTAAAGTAGATATTTTAACTTTACTGAATTGTCTTCTTTGGTATAGTTGTCATTTGAGATGTTTCCATCTCTATTCTCTAGTGATTCAAATAGTTAAAAAATTATGCAAGAAAAACATTTCAACTTCATTAAAACTTAGTACTTTTTTTGAGACTTTTCTCTTTACATACTGTTAATAAGGATTGTTTGTGACTCCTATAAATGGCATGATTCAACTCTTACTGAGCTTTTGTTGTACCTTGTAACTCTATTAAGTAATGCTAAAGTGAAGTATGTTTAAATCTTTACAATATGCTTATGGCATTTTAGTAGATTTGATTTAATTGTTTAGACATGAGACTTGTTGGTTTAAAGTTTAATGGGGTAAAACCTTGGAAATGAATTATCATTTTTAATCTTTATTTCTTCATTCTGACGGATCCTAACTTTGATTTATGTTCATGTTGTGAAAACAGGAAAATATGAAGACCAACAAAGTTAACTCTAAATTTATGTCCATGAAGTTCTATTCTGCTTCAGCGGCTTCTTTCCTTTTTGTCATAGCAATTATTTTCCCTCTTGCTATTGCCGATCTTAATTCCGATAAGCAAGCCCTTCTTGATTTTATCAATGCTGTGCCGCACCGTAAAAACTTGATGTGGAATCCATCCACCTCAATCTGTACATCTTGGGTTGGTATCACTTGCAATCAAGATGGAACTCGAGTTGTTAACGTCCGGCTCCCTGGAGTTGGACTAATTGGCTCCATCCCATCAAATACACTCGGAAAGCTTGATGCTGTGAAAATTATTAGCCTTCGTTCCAACCTACTCGGTGGAAATCTACCTGTTGACATTGCTTCTCTTCCGTCTCTTCAGTATCTCTACCTCCAACATAATAACTTTTCCGGTGAGATTCCAACCTCGTTGTCACCTCAACTAATTGTACTTGATTTGTCTTATAATTCTTTCGCCGGCAGAATTCCGAAGACAGTACAAAATTTGACAGAACTAAATAGTTTGAATCTCCAGAACAACTCCCTATCTGGAAGTATACCTAATCTCAATGCTACTAAGCTCGGTCATTTGAATTTAAGCTACAACAATTTGAGTGGACCCATCCCTTCAGCCCTTCAAGTTTATCCTAATTCGTCGTTTGAAGGAAACTCTCGTTTATGTGGACTGCCTCTAAAGCCGTGCTCTACGATTCCACCTCCTCCTGCCTTGACTCCTACTCCATCATCCGCACCTGGAAAACAAAGCTCCAAAAGTAAATTGAGTAAGGTAGCTATCATAGCCATTGCAGTTGGAGGAGCCGTGTTGCTATTTTTCATAGTTTTTGTTATTGTTCTTTGCTGTTTGAAGAAAGAAGGTGACAGCGGTTCAAGAGAAGTTAAAAGGAAGGGTCCTGGTGCGGGCGGCGGTGGCGGTAGGGGTGAGAAGCCGAAAGAAGAGTTTGGGAGTGGAGTGCAAGAACCTGAGAAAAACAAGTTGGTTTTCTTTGAGGGAAGTTCTTATAATTTTGATCTTGAAGACTTGCTTAGAGCTTCAGCAGAAGTTTTGGGGAAAGGTAGCTATGGTACCTCATATAAGGCTATATTGGAGGAGGCCATGACAGTTGTGGTGAAAAGGTTGAAAGAAGTTGTGGTTGGAAAAAAGGAGTTTGATCAGCAGATGGAGATTATGGGAAGGGTTGGACAACATGCAAATGTTTTGCCGCTTCGCGCTTATTACTATTCAAAGGATGAAAAGCTTCTGGTTTATGACTATGTCCCTGCTGGCAACCTTTCCACACTCTTGCATGGTATGTATGCCTTTCTTTTCCTCTAATTCTAAATAGTTTCAGTTATATCTTTTAAAACTAAACTTGTGTAAAAGCTTACTTTATTTCCTGTAAGATTTCTGAGATGTTTGAAACAATGTTTTAAAAACCACACCGTACGACTCAACTATGAACGGTGCTGTCTACAGTTTGGTTATTTGAGTGGTTCAACTGCGGTTTTGTCCTGGTTCAAGCAGTTTAAAGCAGTTGAACCATGACCGGAGGCCTCATTGGTTTGATGTCCAGTTCGGTTTTTTAAACATTGGTTTGAAGTCCATCTGGATTATTTCATATTACACTCATTGTTTAGCTTCCCTTATTAGAGTATCTACCCTAGCAACTAAAACTCTTCATTTTCTCTCTATTTGATTACAGGCAATCGAACAGGTGGAAGAACTCCATTAGATTGGGACTCGAGAGTAAAAATATCTCTCGGAACTGCAAGAGGAATGGCCCACATCCATTCTGTCGGCGGTCCCAAATTCGCACATGGAAATATCAAGTCCTCAAATGTCCTCCTCAACCAAGATAACGACGGCTGCATTTCTGATTTCGGCCTAGCCTCACTTATGAATGTTCCTGCAAACCCTTCTAGAGCTGCAGGTTATCGTGCTCCTGAGGTGATTGAAACCCGTAAGCACTCACATAAATCAGATGTCTATAGCTTTGGTGTCCTCCTTCTTGAGATGCTTACAGGGAAAGCACCTCTCCAATCTCCTGGACGCGACGATATGGTTGATCTCCCCAGGTGGGTTCAGTCTGTCGTACGAGAGGAGTGGACAGCCGAGGTTTTTGATGTAGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCTTGTGTGGCAAAGATGCCTGATATGAGACCTAACATGGATGAAGTGGTGAAAATGATTGAAGAGATCCGGCAATCTGACTCAGAGAACCGTCCATCTTCCGAAGAGAATAAATCTAAGGACTCAAATGTTCAAACTCCATAA

Protein sequence

>MS.gene008434.t1

MENMKTNKVNSKFMSMKFYSASAASFLFVIAIIFPLAIADLNSDKQALLDFINAVPHRKNLMWNPSTSICTSWVGITCNQDGTRVVNVRLPGVGLIGSIPSNTLGKLDAVKIISLRSNLLGGNLPVDIASLPSLQYLYLQHNNFSGEIPTSLSPQLIVLDLSYNSFAGRIPKTVQNLTELNSLNLQNNSLSGSIPNLNATKLGHLNLSYNNLSGPIPSALQVYPNSSFEGNSRLCGLPLKPCSTIPPPPALTPTPSSAPGKQSSKSKLSKVAIIAIAVGGAVLLFFIVFVIVLCCLKKEGDSGSREVKRKGPGAGGGGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTSYKAILEEAMTVVVKRLKEVVVGKKEFDQQMEIMGRVGQHANVLPLRAYYYSKDEKLLVYDYVPAGNLSTLLHGNRTGGRTPLDWDSRVKISLGTARGMAHIHSVGGPKFAHGNIKSSNVLLNQDNDGCISDFGLASLMNVPANPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKMPDMRPNMDEVVKMIEEIRQSDSENRPSSEENKSKDSNVQTP