Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008594.t1 | XP_003599303.2 | 95.5 | 290 | 13 | 0 | 1 | 290 | 91 | 380 | 1.80E-147 | 531.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008594.t1 | P71019 | 39.4 | 282 | 161 | 4 | 1 | 281 | 18 | 290 | 5.3e-47 | 189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008594.t1 | G7J0N6 | 95.5 | 290 | 13 | 0 | 1 | 290 | 91 | 380 | 1.3e-147 | 531.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76034 | MS.gene008594 | PPI |
| MS.gene074258 | MS.gene008594 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008594.t1 | MTR_3g031380 | 95.517 | 290 | 13 | 0 | 1 | 290 | 91 | 380 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008594.t1 | AT2G30200 | 86.897 | 290 | 38 | 0 | 1 | 290 | 104 | 393 | 1.32e-180 | 503 |
| MS.gene008594.t1 | AT2G30200 | 87.190 | 242 | 31 | 0 | 1 | 242 | 104 | 345 | 1.64e-148 | 421 |
Find 83 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCGTTTGCTGGGGCTTTC+AGG | 0.094720 | 3.1:+49830945 | MS.gene008594:CDS |
| CAAGAAAGCCAATGAGATTT+TGG | 0.134267 | 3.1:+49829363 | MS.gene008594:CDS |
| CTTCTTGATGTATGCATTAA+TGG | 0.181932 | 3.1:+49829483 | MS.gene008594:CDS |
| TATACTGCTCTGGCGTTTGC+TGG | 0.229112 | 3.1:+49830935 | MS.gene008594:CDS |
| AATATCTTCTTTATTGTGTC+AGG | 0.273256 | 3.1:-49832193 | None:intergenic |
| CAGGTGCGCCTGGCTGTTGC+AGG | 0.273267 | 3.1:+49832046 | MS.gene008594:intron |
| CGTAAACTTTCTACCTTTCC+AGG | 0.283273 | 3.1:-49832382 | None:intergenic |
| CCTTACTGGACATAGGTAAT+TGG | 0.315959 | 3.1:-49831769 | None:intergenic |
| CTTTGAAGATGGACTGAAAT+TGG | 0.319783 | 3.1:+49831487 | MS.gene008594:CDS |
| AGCTTCAGGCACTTCCTGAT+TGG | 0.338484 | 3.1:-49831730 | None:intergenic |
| GCTGTCTCTGGAGGCATAAA+AGG | 0.342232 | 3.1:+49831899 | MS.gene008594:CDS |
| ATCTGAACCTTCTCAGCTTC+AGG | 0.348175 | 3.1:-49831744 | None:intergenic |
| TGGAAATGACTGGTATTCTT+GGG | 0.360068 | 3.1:-49832144 | None:intergenic |
| CTCATGGTGGCAGGTGCGCC+TGG | 0.360470 | 3.1:+49832036 | MS.gene008594:intron |
| TGCTGCTGTTGAGCTACTTC+GGG | 0.360693 | 3.1:+49830847 | MS.gene008594:CDS |
| TTCTTGATGTATGCATTAAT+GGG | 0.361976 | 3.1:+49829484 | MS.gene008594:CDS |
| TTGGAAATGACTGGTATTCT+TGG | 0.363800 | 3.1:-49832145 | None:intergenic |
| TGGACTCTTCAGGTTATTGC+TGG | 0.367068 | 3.1:+49832480 | MS.gene008594:intron |
| GCTGAAGAAAAGCTATGAAT+TGG | 0.370795 | 3.1:+49832357 | MS.gene008594:CDS |
| ACTGTTGTTTCCCATTGAAC+AGG | 0.383548 | 3.1:-49832313 | None:intergenic |
| CAGGTTCCATAAAACTAGTA+TGG | 0.401234 | 3.1:-49832075 | None:intergenic |
| TGCTGGAATTGTCAAAAGAA+TGG | 0.402849 | 3.1:+49832497 | MS.gene008594:CDS |
| ATACTGCTCTGGCGTTTGCT+GGG | 0.405436 | 3.1:+49830936 | MS.gene008594:CDS |
| TGACACAATAAAGAAGATAT+TGG | 0.409601 | 3.1:+49832195 | MS.gene008594:CDS |
| AAAGAAGATATTGGCACAAC+AGG | 0.412880 | 3.1:+49832204 | MS.gene008594:CDS |
| GTTTCATGTGGTTTGAGCTT+AGG | 0.423256 | 3.1:+49830908 | MS.gene008594:CDS |
| TTGCTGCTGTTGAGCTACTT+CGG | 0.426896 | 3.1:+49830846 | MS.gene008594:CDS |
| CAGCAAGACTTGTGACATAC+AGG | 0.430360 | 3.1:-49830829 | None:intergenic |
| GTTGTGTGATGCAGCCAATC+AGG | 0.434474 | 3.1:+49831716 | MS.gene008594:CDS |
| GACTGAAATTGGTGAAACTA+AGG | 0.439212 | 3.1:+49831498 | MS.gene008594:CDS |
| AGGTTACTTACCCTGTTCAA+TGG | 0.439364 | 3.1:+49832302 | MS.gene008594:intron |
| TGGCTGCATCACACAACTGC+TGG | 0.441780 | 3.1:-49831710 | None:intergenic |
| AGCCTTGAAAGACTTCGCTT+TGG | 0.442255 | 3.1:-49831939 | None:intergenic |
| GGAACCTGCAGTGTCAAGAT+TGG | 0.459211 | 3.1:+49832090 | MS.gene008594:CDS |
| TAAATACCCCAAAATCTCAT+TGG | 0.463483 | 3.1:-49829371 | None:intergenic |
| GGTTACTTACCCTGTTCAAT+GGG | 0.466160 | 3.1:+49832303 | MS.gene008594:intron |
| TAGGGAAACTATGCTGTCTC+TGG | 0.470485 | 3.1:+49831887 | MS.gene008594:intron |
| GCTTCCAATCTTGACACTGC+AGG | 0.476548 | 3.1:-49832094 | None:intergenic |
| ATATCTTCTTTATTGTGTCA+GGG | 0.486151 | 3.1:-49832192 | None:intergenic |
| CTGAAGAAAAGCTATGAATT+GGG | 0.506499 | 3.1:+49832358 | MS.gene008594:CDS |
| AGCCAAAGCGAAGTCTTTCA+AGG | 0.506804 | 3.1:+49831937 | MS.gene008594:CDS |
| GGAAAGCGCCTGCAACAGCC+AGG | 0.507270 | 3.1:-49832054 | None:intergenic |
| CTATGAATTGGGACCTGGAA+AGG | 0.507524 | 3.1:+49832369 | MS.gene008594:CDS |
| CGATTTGTAAGCTTTGAAGA+TGG | 0.513263 | 3.1:+49831476 | MS.gene008594:intron |
| CTTAGGAGAGTATACTGCTC+TGG | 0.517475 | 3.1:+49830925 | MS.gene008594:CDS |
| GAATTCAACAGTTATCAGTC+AGG | 0.518626 | 3.1:+49829521 | MS.gene008594:CDS |
| ACTAAGGGGTGAAGCCATGC+AGG | 0.520103 | 3.1:+49831514 | MS.gene008594:CDS |
| GCATTTACGTTGGAAATGAC+TGG | 0.530559 | 3.1:-49832154 | None:intergenic |
| ATTGTGTCAGGGTCTGTATG+TGG | 0.531264 | 3.1:-49832181 | None:intergenic |
| TCTTGGGGTTCTAATGTCTG+TGG | 0.536650 | 3.1:-49832128 | None:intergenic |
| TGAGCTACTTCGGGCACGTG+AGG | 0.538884 | 3.1:+49830856 | MS.gene008594:CDS |
| GGAAGTGCCTGAAGCTGAGA+AGG | 0.545626 | 3.1:+49831737 | MS.gene008594:CDS |
| GGAAATGACTGGTATTCTTG+GGG | 0.548400 | 3.1:-49832143 | None:intergenic |
| TACTGCTCTGGCGTTTGCTG+GGG | 0.549969 | 3.1:+49830937 | MS.gene008594:CDS |
| AAAAGCTATGAATTGGGACC+TGG | 0.554297 | 3.1:+49832364 | MS.gene008594:CDS |
| CATGGTTAGTGTGGTAGGAC+TGG | 0.554574 | 3.1:+49831674 | MS.gene008594:CDS |
| GGTGCCATGGTTAGTGTGGT+AGG | 0.555350 | 3.1:+49831669 | MS.gene008594:CDS |
| GTGAAGACTCTTCTATCCAA+GGG | 0.563734 | 3.1:+49832334 | MS.gene008594:CDS |
| TTGTACAAAACTGCAGCAGA+AGG | 0.572446 | 3.1:-49829343 | None:intergenic |
| CTGTTGTTTCCCATTGAACA+GGG | 0.572523 | 3.1:-49832312 | None:intergenic |
| GAGCTACTTCGGGCACGTGA+GGG | 0.576524 | 3.1:+49830857 | MS.gene008594:CDS |
| GATTCTGTTGATGTTTCATG+TGG | 0.577223 | 3.1:+49830896 | MS.gene008594:CDS |
| CTACTTCGGGCACGTGAGGG+AGG | 0.580356 | 3.1:+49830860 | MS.gene008594:CDS |
| AGTGAAGACTCTTCTATCCA+AGG | 0.584582 | 3.1:+49832333 | MS.gene008594:CDS |
| GAAGTCTTTCAAGGCTCGAA+TGG | 0.594481 | 3.1:+49831946 | MS.gene008594:CDS |
| TCAAGAACCTTACTGGACAT+AGG | 0.602304 | 3.1:-49831776 | None:intergenic |
| TAAAGGTGCCATGGTTAGTG+TGG | 0.602685 | 3.1:+49831665 | MS.gene008594:CDS |
| CATAAAAGGAATAGAAGTCG+TGG | 0.615412 | 3.1:+49831913 | MS.gene008594:CDS |
| GATGCTGCTGATGCTACTAA+AGG | 0.624615 | 3.1:+49831648 | MS.gene008594:CDS |
| AGACTTGTGACATACAGGGC+AGG | 0.626537 | 3.1:-49830824 | None:intergenic |
| GGAAACTATGCTGTCTCTGG+AGG | 0.631276 | 3.1:+49831890 | MS.gene008594:CDS |
| GGTAGGACTGGACTCAGAGA+AGG | 0.637373 | 3.1:+49831686 | MS.gene008594:CDS |
| TGATGCTACTAAAGGTGCCA+TGG | 0.641755 | 3.1:+49831656 | MS.gene008594:CDS |
| AGCAAGACTTGTGACATACA+GGG | 0.652472 | 3.1:-49830828 | None:intergenic |
| ACTACCACAGATTACCTGCA+TGG | 0.656968 | 3.1:-49831528 | None:intergenic |
| CAGTCCTACCACACTAACCA+TGG | 0.663013 | 3.1:-49831673 | None:intergenic |
| TGTATGCATTAATGGGCCGA+AGG | 0.664486 | 3.1:+49829491 | MS.gene008594:CDS |
| GGTGCTGATATTGAAAACAT+CGG | 0.665514 | 3.1:+49832525 | MS.gene008594:CDS |
| CTGAAATTGGTGAAACTAAG+GGG | 0.669315 | 3.1:+49831500 | MS.gene008594:CDS |
| ATTGTCAAAAGAATGGACAA+AGG | 0.682335 | 3.1:+49832504 | MS.gene008594:CDS |
| ACTGAAATTGGTGAAACTAA+GGG | 0.694892 | 3.1:+49831499 | MS.gene008594:CDS |
| TGAAGACTCTTCTATCCAAG+GGG | 0.710603 | 3.1:+49832335 | MS.gene008594:CDS |
| ATGTGGCAGAGCATTTACGT+TGG | 0.714429 | 3.1:-49832164 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAGAAAAATATGTAATTA+TGG | + | chr3.1:49831106-49831125 | MS.gene008594:intron | 15.0% |
| !! | AAGTACAAAAATAATGAAAT+TGG | - | chr3.1:49829784-49829803 | None:intergenic | 15.0% |
| !! | ATAAAAAAAACTTCTACTAT+TGG | + | chr3.1:49829976-49829995 | MS.gene008594:intron | 15.0% |
| !! | TTTAAAAAAAAACAACTCAA+AGG | - | chr3.1:49831406-49831425 | None:intergenic | 15.0% |
| !! | TTTATAAACAACAAATTTCA+TGG | - | chr3.1:49830756-49830775 | None:intergenic | 15.0% |
| !!! | AAATTGACTGTATTATATTT+TGG | + | chr3.1:49831864-49831883 | MS.gene008594:intron | 15.0% |
| !!! | ATGAAATTTGTTGTTTATAA+AGG | + | chr3.1:49830755-49830774 | MS.gene008594:intron | 15.0% |
| !!! | GTTTAAATTACAACTATTTT+TGG | + | chr3.1:49829407-49829426 | MS.gene008594:intron | 15.0% |
| !!! | TTGTTTTGTATTATGTATTT+AGG | + | chr3.1:49829454-49829473 | MS.gene008594:intron | 15.0% |
| !! | ACAAAAATAATGAAATTGGA+TGG | - | chr3.1:49829780-49829799 | None:intergenic | 20.0% |
| !! | ACAAATCGAATTAAATACAT+GGG | - | chr3.1:49831464-49831483 | None:intergenic | 20.0% |
| !! | GTTAACATTATCAATGAAAT+AGG | + | chr3.1:49830537-49830556 | MS.gene008594:intron | 20.0% |
| !! | TACAAATCGAATTAAATACA+TGG | - | chr3.1:49831465-49831484 | None:intergenic | 20.0% |
| !!! | AACATGGTAATCAATTTTTT+TGG | - | chr3.1:49831016-49831035 | None:intergenic | 20.0% |
| !!! | TCAAGATTGTTATTTTATTG+AGG | + | chr3.1:49829573-49829592 | MS.gene008594:intron | 20.0% |
| !!! | TTTTTTGGACAAAAAATACA+TGG | - | chr3.1:49831001-49831020 | None:intergenic | 20.0% |
| ! | AAACTTTAAATGACTCATAC+TGG | - | chr3.1:49831208-49831227 | None:intergenic | 25.0% |
| ! | AAATTACATATATGCCTCTA+TGG | - | chr3.1:49830781-49830800 | None:intergenic | 25.0% |
| ! | AATATCTTCTTTATTGTGTC+AGG | - | chr3.1:49832196-49832215 | None:intergenic | 25.0% |
| ! | AGTCATTACAATCTAGTAAA+TGG | + | chr3.1:49831246-49831265 | MS.gene008594:intron | 25.0% |
| ! | ATATCTTCTTTATTGTGTCA+GGG | - | chr3.1:49832195-49832214 | None:intergenic | 25.0% |
| ! | ATCTCAAATATTCCTAAACT+GGG | - | chr3.1:49829809-49829828 | None:intergenic | 25.0% |
| ! | CAAATATTTCTTGAAACGTT+GGG | - | chr3.1:49831084-49831103 | None:intergenic | 25.0% |
| ! | GGAATAAAAAGAGAATAAAG+AGG | + | chr3.1:49830647-49830666 | MS.gene008594:intron | 25.0% |
| ! | GTTGGGAAAAATATGAAAAA+CGG | - | chr3.1:49831067-49831086 | None:intergenic | 25.0% |
| ! | TAGCAGAATTATAAAACTAG+AGG | - | chr3.1:49832446-49832465 | None:intergenic | 25.0% |
| ! | TCAAATATTTCTTGAAACGT+TGG | - | chr3.1:49831085-49831104 | None:intergenic | 25.0% |
| ! | TGACACAATAAAGAAGATAT+TGG | + | chr3.1:49832195-49832214 | MS.gene008594:CDS | 25.0% |
| ! | TGTAAATCAAGACAAAAAAG+TGG | - | chr3.1:49831432-49831451 | None:intergenic | 25.0% |
| ! | TTCTTGATGTATGCATTAAT+GGG | + | chr3.1:49829484-49829503 | MS.gene008594:CDS | 25.0% |
| ! | TTCTTTATGATATGACGAAA+CGG | + | chr3.1:49829648-49829667 | MS.gene008594:intron | 25.0% |
| ! | TTGTTATAATAGTTCCAGTT+GGG | - | chr3.1:49830398-49830417 | None:intergenic | 25.0% |
| ! | TTTAATGTAACAGAAGTCTA+AGG | - | chr3.1:49830090-49830109 | None:intergenic | 25.0% |
| !! | CTCTGTAATCATGATTTTAA+AGG | + | chr3.1:49830626-49830645 | MS.gene008594:intron | 25.0% |
| !!! | AATATGAGTTGGTTTGTAAT+CGG | + | chr3.1:49830251-49830270 | MS.gene008594:intron | 25.0% |
| !!! | AGATTGTTATTTTATTGAGG+TGG | + | chr3.1:49829576-49829595 | MS.gene008594:intron | 25.0% |
| !!! | CTGCTAACTTTTATTTTATC+TGG | + | chr3.1:49832460-49832479 | MS.gene008594:intron | 25.0% |
| !!! | CTTTAAAATCATGATTACAG+AGG | - | chr3.1:49830628-49830647 | None:intergenic | 25.0% |
| !!! | GACTGTATTATATTTTGGTA+GGG | + | chr3.1:49831869-49831888 | MS.gene008594:intron | 25.0% |
| !!! | TGACTGTATTATATTTTGGT+AGG | + | chr3.1:49831868-49831887 | MS.gene008594:intron | 25.0% |
| AATTCTACTGTCATGGTAAA+AGG | - | chr3.1:49831141-49831160 | None:intergenic | 30.0% | |
| AATTGCACTTCTAATGCAAT+TGG | + | chr3.1:49832278-49832297 | MS.gene008594:intron | 30.0% | |
| ACAATTAGAAGTTGAATCAC+TGG | + | chr3.1:49830301-49830320 | MS.gene008594:intron | 30.0% | |
| ACTGAAATTGGTGAAACTAA+GGG | + | chr3.1:49831499-49831518 | MS.gene008594:CDS | 30.0% | |
| AGATAAATGCTCTCTTATCA+GGG | - | chr3.1:49830483-49830502 | None:intergenic | 30.0% | |
| ATATGTAATTATGGCGTATG+TGG | + | chr3.1:49831115-49831134 | MS.gene008594:intron | 30.0% | |
| ATCATCTATACTTGATCAAC+AGG | - | chr3.1:49830198-49830217 | None:intergenic | 30.0% | |
| ATTCCATCTATGAGAAGTTT+AGG | + | chr3.1:49831285-49831304 | MS.gene008594:intron | 30.0% | |
| ATTGTCAAAAGAATGGACAA+AGG | + | chr3.1:49832504-49832523 | MS.gene008594:CDS | 30.0% | |
| CAACTCATATTACACTGTTA+TGG | - | chr3.1:49830242-49830261 | None:intergenic | 30.0% | |
| CAGTTTAGGAATATTTGAGA+TGG | + | chr3.1:49829808-49829827 | MS.gene008594:intron | 30.0% | |
| CATAACAGTGTAATATGAGT+TGG | + | chr3.1:49830240-49830259 | MS.gene008594:intron | 30.0% | |
| CATCTCAAATATTCCTAAAC+TGG | - | chr3.1:49829810-49829829 | None:intergenic | 30.0% | |
| CTGAAGAAAAGCTATGAATT+GGG | + | chr3.1:49832358-49832377 | MS.gene008594:CDS | 30.0% | |
| CTTCTTGATGTATGCATTAA+TGG | + | chr3.1:49829483-49829502 | MS.gene008594:CDS | 30.0% | |
| GTTGTTATAATAGTTCCAGT+TGG | - | chr3.1:49830399-49830418 | None:intergenic | 30.0% | |
| TAAAATCATGATTACAGAGG+AGG | - | chr3.1:49830625-49830644 | None:intergenic | 30.0% | |
| TAAATACCCCAAAATCTCAT+TGG | - | chr3.1:49829374-49829393 | None:intergenic | 30.0% | |
| TAATGAAATTGGATGGAATG+TGG | - | chr3.1:49829773-49829792 | None:intergenic | 30.0% | |
| TATGCATTCTAGTGTAGAAA+AGG | - | chr3.1:49830701-49830720 | None:intergenic | 30.0% | |
| TCCATTTACAAACAACAGAA+AGG | + | chr3.1:49829869-49829888 | MS.gene008594:intron | 30.0% | |
| TCTCAAATATTCCTAAACTG+GGG | - | chr3.1:49829808-49829827 | None:intergenic | 30.0% | |
| TTTACCATGACAGTAGAATT+AGG | + | chr3.1:49831141-49831160 | MS.gene008594:intron | 30.0% | |
| ! | AAGAAAGCCAATGAGATTTT+GGG | + | chr3.1:49829364-49829383 | MS.gene008594:CDS | 30.0% |
| ! | AAGCCTTTTAATATTAGACG+GGG | + | chr3.1:49830426-49830445 | MS.gene008594:intron | 30.0% |
| ! | CAAGCCTTTTAATATTAGAC+GGG | + | chr3.1:49830425-49830444 | MS.gene008594:intron | 30.0% |
| ! | CCAAGCCTTTTAATATTAGA+CGG | + | chr3.1:49830424-49830443 | MS.gene008594:intron | 30.0% |
| ! | TAGAAACAGAATTTTGCCTA+AGG | - | chr3.1:49831820-49831839 | None:intergenic | 30.0% |
| ! | TCCTTTCTGTTGTTTGTAAA+TGG | - | chr3.1:49829873-49829892 | None:intergenic | 30.0% |
| ! | TTAGTGTTATCGATTGTGAA+TGG | + | chr3.1:49829702-49829721 | MS.gene008594:intron | 30.0% |
| ! | TTTTCCTAATTCTACTGTCA+TGG | - | chr3.1:49831148-49831167 | None:intergenic | 30.0% |
| !! | GTTATTTTATTGAGGTGGAA+GGG | + | chr3.1:49829581-49829600 | MS.gene008594:intron | 30.0% |
| !! | TTATTTTATCTGGACTCTTC+AGG | + | chr3.1:49832470-49832489 | MS.gene008594:intron | 30.0% |
| !!! | TGTTATTTTATTGAGGTGGA+AGG | + | chr3.1:49829580-49829599 | MS.gene008594:intron | 30.0% |
| AAAGAAGATATTGGCACAAC+AGG | + | chr3.1:49832204-49832223 | MS.gene008594:CDS | 35.0% | |
| ACTCTCAAGTCTCAAATTTC+TGG | - | chr3.1:49830163-49830182 | None:intergenic | 35.0% | |
| AGAAAGCAAAGAATCTGCAA+TGG | + | chr3.1:49829726-49829745 | MS.gene008594:intron | 35.0% | |
| AGGCATTATTACTTTGCGAA+AGG | - | chr3.1:49832012-49832031 | None:intergenic | 35.0% | |
| ATAACATATCCTCAGTGTGT+TGG | + | chr3.1:49829922-49829941 | MS.gene008594:intron | 35.0% | |
| ATTTATGTGCAAAACCACAC+AGG | - | chr3.1:49831367-49831386 | None:intergenic | 35.0% | |
| CAGGTTCCATAAAACTAGTA+TGG | - | chr3.1:49832078-49832097 | None:intergenic | 35.0% | |
| CATAAAAGGAATAGAAGTCG+TGG | + | chr3.1:49831913-49831932 | MS.gene008594:CDS | 35.0% | |
| CATTATTACTTTGCGAAAGG+TGG | - | chr3.1:49832009-49832028 | None:intergenic | 35.0% | |
| CCGTCTAATATTAAAAGGCT+TGG | - | chr3.1:49830427-49830446 | None:intergenic | 35.0% | |
| CTGAAATTGGTGAAACTAAG+GGG | + | chr3.1:49831500-49831519 | MS.gene008594:CDS | 35.0% | |
| CTGCATGATGAAAAAATCAG+TGG | - | chr3.1:49829848-49829867 | None:intergenic | 35.0% | |
| GAATTCAACAGTTATCAGTC+AGG | + | chr3.1:49829521-49829540 | MS.gene008594:CDS | 35.0% | |
| GACTGAAATTGGTGAAACTA+AGG | + | chr3.1:49831498-49831517 | MS.gene008594:CDS | 35.0% | |
| GAGAAGCAGTAGAAAAAACA+TGG | - | chr3.1:49831032-49831051 | None:intergenic | 35.0% | |
| GAGATAAATGCTCTCTTATC+AGG | - | chr3.1:49830484-49830503 | None:intergenic | 35.0% | |
| GATTCTGTTGATGTTTCATG+TGG | + | chr3.1:49830896-49830915 | MS.gene008594:CDS | 35.0% | |
| GCTATTATATTTCACCCAAC+TGG | + | chr3.1:49830381-49830400 | MS.gene008594:intron | 35.0% | |
| GCTGAAGAAAAGCTATGAAT+TGG | + | chr3.1:49832357-49832376 | MS.gene008594:CDS | 35.0% | |
| GTAACCATTGTTCTTTATCC+AGG | + | chr3.1:49831626-49831645 | MS.gene008594:intron | 35.0% | |
| GTAGAATTAGGAAAACCAAG+TGG | + | chr3.1:49831153-49831172 | MS.gene008594:intron | 35.0% | |
| GTTGTTTATAAAGGCCATAG+AGG | + | chr3.1:49830764-49830783 | MS.gene008594:intron | 35.0% | |
| TATGTTAAGTGACCCAACTA+CGG | + | chr3.1:49831177-49831196 | MS.gene008594:intron | 35.0% | |
| TCCAATGCAAAAGACATAAG+TGG | + | chr3.1:49832250-49832269 | MS.gene008594:intron | 35.0% | |
| TCCATTGAGATTCAAGAACA+CGG | - | chr3.1:49832421-49832440 | None:intergenic | 35.0% | |
| TGAAAAACGGAGACAATGAA+AGG | - | chr3.1:49831054-49831073 | None:intergenic | 35.0% | |
| TGCTGGAATTGTCAAAAGAA+TGG | + | chr3.1:49832497-49832516 | MS.gene008594:CDS | 35.0% | |
| TGGAAATGACTGGTATTCTT+GGG | - | chr3.1:49832147-49832166 | None:intergenic | 35.0% | |
| TTCAAGAACACGGATAGTAT+AGG | - | chr3.1:49832411-49832430 | None:intergenic | 35.0% | |
| TTGGAAATGACTGGTATTCT+TGG | - | chr3.1:49832148-49832167 | None:intergenic | 35.0% | |
| TTTATGTGCAAAACCACACA+GGG | - | chr3.1:49831366-49831385 | None:intergenic | 35.0% | |
| ! | ACCACTTATGTCTTTTGCAT+TGG | - | chr3.1:49832254-49832273 | None:intergenic | 35.0% |
| ! | AGAAAGCCAATGAGATTTTG+GGG | + | chr3.1:49829365-49829384 | MS.gene008594:CDS | 35.0% |
| ! | CAAGAAAGCCAATGAGATTT+TGG | + | chr3.1:49829363-49829382 | MS.gene008594:CDS | 35.0% |
| ! | GTAATAATGCCTTTTCCTCA+TGG | + | chr3.1:49832020-49832039 | MS.gene008594:intron | 35.0% |
| ! | GTTGAATTCAGCTTTTCCTT+CGG | - | chr3.1:49829510-49829529 | None:intergenic | 35.0% |
| ! | TTTTGTACTTTCCCCAGTTT+AGG | + | chr3.1:49829794-49829813 | MS.gene008594:intron | 35.0% |
| !! | CGATTTGTAAGCTTTGAAGA+TGG | + | chr3.1:49831476-49831495 | MS.gene008594:intron | 35.0% |
| !! | CTTTGAAGATGGACTGAAAT+TGG | + | chr3.1:49831487-49831506 | MS.gene008594:CDS | 35.0% |
| !! | GGTGCTGATATTGAAAACAT+CGG | + | chr3.1:49832525-49832544 | MS.gene008594:CDS | 35.0% |
| !! | GTGTGGTTTTGCACATAAAT+TGG | + | chr3.1:49831367-49831386 | MS.gene008594:intron | 35.0% |
| !!! | ATCTGGCTTTTAACAACCTT+AGG | + | chr3.1:49831801-49831820 | MS.gene008594:intron | 35.0% |
| !!! | CGCTTTCCATACTAGTTTTA+TGG | + | chr3.1:49832069-49832088 | MS.gene008594:CDS | 35.0% |
| AAAAGCTATGAATTGGGACC+TGG | + | chr3.1:49832364-49832383 | MS.gene008594:CDS | 40.0% | |
| AAGGGTGGAGTGAAATTTAG+TGG | + | chr3.1:49829599-49829618 | MS.gene008594:intron | 40.0% | |
| AGCAAGACTTGTGACATACA+GGG | - | chr3.1:49830831-49830850 | None:intergenic | 40.0% | |
| AGGCCTAAACTTCTCATAGA+TGG | - | chr3.1:49831291-49831310 | None:intergenic | 40.0% | |
| AGGTTACTTACCCTGTTCAA+TGG | + | chr3.1:49832302-49832321 | MS.gene008594:intron | 40.0% | |
| AGTGAAGACTCTTCTATCCA+AGG | + | chr3.1:49832333-49832352 | MS.gene008594:CDS | 40.0% | |
| ATCATTCATCCAACACACTG+AGG | - | chr3.1:49829934-49829953 | None:intergenic | 40.0% | |
| ATGATTACAGAGGAGGTCTA+AGG | - | chr3.1:49830618-49830637 | None:intergenic | 40.0% | |
| ATGTTAAGTGACCCAACTAC+GGG | + | chr3.1:49831178-49831197 | MS.gene008594:intron | 40.0% | |
| CAGCCCCGTCTAATATTAAA+AGG | - | chr3.1:49830432-49830451 | None:intergenic | 40.0% | |
| CCAATTACCTATGTCCAGTA+AGG | + | chr3.1:49831769-49831788 | MS.gene008594:intron | 40.0% | |
| CCTTACTGGACATAGGTAAT+TGG | - | chr3.1:49831772-49831791 | None:intergenic | 40.0% | |
| CGTAAACTTTCTACCTTTCC+AGG | - | chr3.1:49832385-49832404 | None:intergenic | 40.0% | |
| CTGACAAGCTGAAAACAAAC+AGG | - | chr3.1:49831311-49831330 | None:intergenic | 40.0% | |
| GAATCACTGGAAATCACTTC+TGG | + | chr3.1:49830314-49830333 | MS.gene008594:intron | 40.0% | |
| GCATCCTGGATAAAGAACAA+TGG | - | chr3.1:49831633-49831652 | None:intergenic | 40.0% | |
| GCATTTACGTTGGAAATGAC+TGG | - | chr3.1:49832157-49832176 | None:intergenic | 40.0% | |
| GGAAATGACTGGTATTCTTG+GGG | - | chr3.1:49832146-49832165 | None:intergenic | 40.0% | |
| GGTCACTTAACATATCCACT+TGG | - | chr3.1:49831171-49831190 | None:intergenic | 40.0% | |
| GGTTACTTACCCTGTTCAAT+GGG | + | chr3.1:49832303-49832322 | MS.gene008594:intron | 40.0% | |
| GTGAAGACTCTTCTATCCAA+GGG | + | chr3.1:49832334-49832353 | MS.gene008594:CDS | 40.0% | |
| GTTTCATGTGGTTTGAGCTT+AGG | + | chr3.1:49830908-49830927 | MS.gene008594:CDS | 40.0% | |
| TATGTCCAGTAAGGTTCTTG+AGG | + | chr3.1:49831778-49831797 | MS.gene008594:intron | 40.0% | |
| TCAAGAACCTTACTGGACAT+AGG | - | chr3.1:49831779-49831798 | None:intergenic | 40.0% | |
| TCCGTGTTCTTGAATCTCAA+TGG | + | chr3.1:49832417-49832436 | MS.gene008594:intron | 40.0% | |
| TGAAGACTCTTCTATCCAAG+GGG | + | chr3.1:49832335-49832354 | MS.gene008594:CDS | 40.0% | |
| TGACGAAACGGCATGAAATT+AGG | + | chr3.1:49829660-49829679 | MS.gene008594:intron | 40.0% | |
| TTGTACAAAACTGCAGCAGA+AGG | - | chr3.1:49829346-49829365 | None:intergenic | 40.0% | |
| ! | ATAATGCCTTTTCCTCATGG+TGG | + | chr3.1:49832023-49832042 | MS.gene008594:intron | 40.0% |
| ! | ATTTTATTGAGGTGGAAGGG+TGG | + | chr3.1:49829584-49829603 | MS.gene008594:intron | 40.0% |
| ! | CTTTTAATATTAGACGGGGC+TGG | + | chr3.1:49830430-49830449 | MS.gene008594:intron | 40.0% |
| !! | ACTGTTGTTTCCCATTGAAC+AGG | - | chr3.1:49832316-49832335 | None:intergenic | 40.0% |
| !! | CTGTTGTTTCCCATTGAACA+GGG | - | chr3.1:49832315-49832334 | None:intergenic | 40.0% |
| AATTGGATGGAATGTGGTGC+AGG | - | chr3.1:49829767-49829786 | None:intergenic | 45.0% | |
| ACTACCACAGATTACCTGCA+TGG | - | chr3.1:49831531-49831550 | None:intergenic | 45.0% | |
| AGCCAAAGCGAAGTCTTTCA+AGG | + | chr3.1:49831937-49831956 | MS.gene008594:CDS | 45.0% | |
| AGCCTTGAAAGACTTCGCTT+TGG | - | chr3.1:49831942-49831961 | None:intergenic | 45.0% | |
| ATACTGGAAACCCCGTAGTT+GGG | - | chr3.1:49831192-49831211 | None:intergenic | 45.0% | |
| ATCTGAACCTTCTCAGCTTC+AGG | - | chr3.1:49831747-49831766 | None:intergenic | 45.0% | |
| ATTGGATGGAATGTGGTGCA+GGG | - | chr3.1:49829766-49829785 | None:intergenic | 45.0% | |
| ATTGTGTCAGGGTCTGTATG+TGG | - | chr3.1:49832184-49832203 | None:intergenic | 45.0% | |
| CAGATCCTCAAGAACCTTAC+TGG | - | chr3.1:49831786-49831805 | None:intergenic | 45.0% | |
| CAGCAAGACTTGTGACATAC+AGG | - | chr3.1:49830832-49830851 | None:intergenic | 45.0% | |
| CAGTAAGGTTCTTGAGGATC+TGG | + | chr3.1:49831784-49831803 | MS.gene008594:intron | 45.0% | |
| CGAAACGGCATGAAATTAGG+TGG | + | chr3.1:49829663-49829682 | MS.gene008594:intron | 45.0% | |
| CTATGAATTGGGACCTGGAA+AGG | + | chr3.1:49832369-49832388 | MS.gene008594:CDS | 45.0% | |
| GAAGTCTTTCAAGGCTCGAA+TGG | + | chr3.1:49831946-49831965 | MS.gene008594:CDS | 45.0% | |
| GATGCTGCTGATGCTACTAA+AGG | + | chr3.1:49831648-49831667 | MS.gene008594:CDS | 45.0% | |
| GCACTTCTAATGCAATTGGC+AGG | + | chr3.1:49832282-49832301 | MS.gene008594:intron | 45.0% | |
| GCTTGTCAGCTTGTAGCATA+TGG | + | chr3.1:49831322-49831341 | MS.gene008594:intron | 45.0% | |
| GGCTGAAGCAGAGAATTAGA+TGG | - | chr3.1:49830806-49830825 | None:intergenic | 45.0% | |
| TAGGGAAACTATGCTGTCTC+TGG | + | chr3.1:49831887-49831906 | MS.gene008594:intron | 45.0% | |
| TATTGGCACAACAGGTATGC+AGG | + | chr3.1:49832212-49832231 | MS.gene008594:intron | 45.0% | |
| TCACTGGAAATCACTTCTGG+TGG | + | chr3.1:49830317-49830336 | MS.gene008594:intron | 45.0% | |
| TGTTAAGTGACCCAACTACG+GGG | + | chr3.1:49831179-49831198 | MS.gene008594:intron | 45.0% | |
| TTGCTGCTGTTGAGCTACTT+CGG | + | chr3.1:49830846-49830865 | MS.gene008594:CDS | 45.0% | |
| ! | ATAGCTTTTCTTCAGCCCCT+TGG | - | chr3.1:49832353-49832372 | None:intergenic | 45.0% |
| ! | ATGTGGCAGAGCATTTACGT+TGG | - | chr3.1:49832167-49832186 | None:intergenic | 45.0% |
| ! | CTTAGGAGAGTATACTGCTC+TGG | + | chr3.1:49830925-49830944 | MS.gene008594:CDS | 45.0% |
| ! | TCTTGGGGTTCTAATGTCTG+TGG | - | chr3.1:49832131-49832150 | None:intergenic | 45.0% |
| ! | TGGACTCTTCAGGTTATTGC+TGG | + | chr3.1:49832480-49832499 | MS.gene008594:intron | 45.0% |
| ! | TGTATGCATTAATGGGCCGA+AGG | + | chr3.1:49829491-49829510 | MS.gene008594:CDS | 45.0% |
| !! | GAAGAAGTATCTTCCCTGTG+TGG | + | chr3.1:49831350-49831369 | MS.gene008594:intron | 45.0% |
| !! | TAAAGGTGCCATGGTTAGTG+TGG | + | chr3.1:49831665-49831684 | MS.gene008594:CDS | 45.0% |
| !! | TGATGCTACTAAAGGTGCCA+TGG | + | chr3.1:49831656-49831675 | MS.gene008594:CDS | 45.0% |
| AGACTTGTGACATACAGGGC+AGG | - | chr3.1:49830827-49830846 | None:intergenic | 50.0% | |
| AGCTTCAGGCACTTCCTGAT+TGG | - | chr3.1:49831733-49831752 | None:intergenic | 50.0% | |
| ATACTGCTCTGGCGTTTGCT+GGG | + | chr3.1:49830936-49830955 | MS.gene008594:CDS | 50.0% | |
| CAGTCCTACCACACTAACCA+TGG | - | chr3.1:49831676-49831695 | None:intergenic | 50.0% | |
| CATACTGGAAACCCCGTAGT+TGG | - | chr3.1:49831193-49831212 | None:intergenic | 50.0% | |
| CATGGTTAGTGTGGTAGGAC+TGG | + | chr3.1:49831674-49831693 | MS.gene008594:CDS | 50.0% | |
| GAAGCCATGCAGGTAATCTG+TGG | + | chr3.1:49831524-49831543 | MS.gene008594:intron | 50.0% | |
| GCTTCCAATCTTGACACTGC+AGG | - | chr3.1:49832097-49832116 | None:intergenic | 50.0% | |
| GGAAACTATGCTGTCTCTGG+AGG | + | chr3.1:49831890-49831909 | MS.gene008594:CDS | 50.0% | |
| GGAACCTGCAGTGTCAAGAT+TGG | + | chr3.1:49832090-49832109 | MS.gene008594:CDS | 50.0% | |
| GTGCTCAAGTGCAGACAATG+CGG | - | chr3.1:49830575-49830594 | None:intergenic | 50.0% | |
| GTTGTGTGATGCAGCCAATC+AGG | + | chr3.1:49831716-49831735 | MS.gene008594:CDS | 50.0% | |
| TAGTAGCATCAGCAGCATCC+TGG | - | chr3.1:49831647-49831666 | None:intergenic | 50.0% | |
| TATACTGCTCTGGCGTTTGC+TGG | + | chr3.1:49830935-49830954 | MS.gene008594:CDS | 50.0% | |
| TGCTGCTGTTGAGCTACTTC+GGG | + | chr3.1:49830847-49830866 | MS.gene008594:CDS | 50.0% | |
| ! | GCTGTCTCTGGAGGCATAAA+AGG | + | chr3.1:49831899-49831918 | MS.gene008594:CDS | 50.0% |
| ! | TACAGAGGAGGTCTAAGGTC+TGG | - | chr3.1:49830613-49830632 | None:intergenic | 50.0% |
| AAGGTCTGGTGAGGAGGGAA+TGG | - | chr3.1:49830599-49830618 | None:intergenic | 55.0% | |
| ACTAAGGGGTGAAGCCATGC+AGG | + | chr3.1:49831514-49831533 | MS.gene008594:CDS | 55.0% | |
| CACCTGCCACCATGAGGAAA+AGG | - | chr3.1:49832032-49832051 | None:intergenic | 55.0% | |
| GGTAGGACTGGACTCAGAGA+AGG | + | chr3.1:49831686-49831705 | MS.gene008594:CDS | 55.0% | |
| TGGCTGCATCACACAACTGC+TGG | - | chr3.1:49831713-49831732 | None:intergenic | 55.0% | |
| ! | AGGAGGTCTAAGGTCTGGTG+AGG | - | chr3.1:49830608-49830627 | None:intergenic | 55.0% |
| ! | AGGTCTAAGGTCTGGTGAGG+AGG | - | chr3.1:49830605-49830624 | None:intergenic | 55.0% |
| ! | GGTCTAAGGTCTGGTGAGGA+GGG | - | chr3.1:49830604-49830623 | None:intergenic | 55.0% |
| ! | GGTGCCATGGTTAGTGTGGT+AGG | + | chr3.1:49831669-49831688 | MS.gene008594:CDS | 55.0% |
| ! | TACTGCTCTGGCGTTTGCTG+GGG | + | chr3.1:49830937-49830956 | MS.gene008594:CDS | 55.0% |
| ! | TGCCTTTTCCTCATGGTGGC+AGG | + | chr3.1:49832027-49832046 | MS.gene008594:intron | 55.0% |
| !! | ATTAGACGGGGCTGGCTACA+TGG | + | chr3.1:49830438-49830457 | MS.gene008594:intron | 55.0% |
| !! | GGAAGTGCCTGAAGCTGAGA+AGG | + | chr3.1:49831737-49831756 | MS.gene008594:CDS | 55.0% |
| GAGCTACTTCGGGCACGTGA+GGG | + | chr3.1:49830857-49830876 | MS.gene008594:CDS | 60.0% | |
| TGAGCTACTTCGGGCACGTG+AGG | + | chr3.1:49830856-49830875 | MS.gene008594:CDS | 60.0% | |
| ! | TGGCGTTTGCTGGGGCTTTC+AGG | + | chr3.1:49830945-49830964 | MS.gene008594:CDS | 60.0% |
| CTACTTCGGGCACGTGAGGG+AGG | + | chr3.1:49830860-49830879 | MS.gene008594:CDS | 65.0% | |
| !! | GGAAAGCGCCTGCAACAGCC+AGG | - | chr3.1:49832057-49832076 | None:intergenic | 65.0% |
| CAGGCGCACCTGCCACCATG+AGG | - | chr3.1:49832038-49832057 | None:intergenic | 70.0% | |
| CAGGTGCGCCTGGCTGTTGC+AGG | + | chr3.1:49832046-49832065 | MS.gene008594:intron | 70.0% | |
| CTCATGGTGGCAGGTGCGCC+TGG | + | chr3.1:49832036-49832055 | MS.gene008594:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 49829319 | 49832554 | 49829319 | ID=MS.gene008594 |
| chr3.1 | mRNA | 49829319 | 49832554 | 49829319 | ID=MS.gene008594.t1;Parent=MS.gene008594 |
| chr3.1 | exon | 49829319 | 49829386 | 49829319 | ID=MS.gene008594.t1.exon1;Parent=MS.gene008594.t1 |
| chr3.1 | CDS | 49829319 | 49829386 | 49829319 | ID=cds.MS.gene008594.t1;Parent=MS.gene008594.t1 |
| chr3.1 | exon | 49829476 | 49829542 | 49829476 | ID=MS.gene008594.t1.exon2;Parent=MS.gene008594.t1 |
| chr3.1 | CDS | 49829476 | 49829542 | 49829476 | ID=cds.MS.gene008594.t1;Parent=MS.gene008594.t1 |
| chr3.1 | exon | 49830824 | 49830966 | 49830824 | ID=MS.gene008594.t1.exon3;Parent=MS.gene008594.t1 |
| chr3.1 | CDS | 49830824 | 49830966 | 49830824 | ID=cds.MS.gene008594.t1;Parent=MS.gene008594.t1 |
| chr3.1 | exon | 49831487 | 49831535 | 49831487 | ID=MS.gene008594.t1.exon4;Parent=MS.gene008594.t1 |
| chr3.1 | CDS | 49831487 | 49831535 | 49831487 | ID=cds.MS.gene008594.t1;Parent=MS.gene008594.t1 |
| chr3.1 | exon | 49831648 | 49831785 | 49831648 | ID=MS.gene008594.t1.exon5;Parent=MS.gene008594.t1 |
| chr3.1 | CDS | 49831648 | 49831785 | 49831648 | ID=cds.MS.gene008594.t1;Parent=MS.gene008594.t1 |
| chr3.1 | exon | 49831890 | 49831970 | 49831890 | ID=MS.gene008594.t1.exon6;Parent=MS.gene008594.t1 |
| chr3.1 | CDS | 49831890 | 49831970 | 49831890 | ID=cds.MS.gene008594.t1;Parent=MS.gene008594.t1 |
| chr3.1 | exon | 49832049 | 49832225 | 49832049 | ID=MS.gene008594.t1.exon7;Parent=MS.gene008594.t1 |
| chr3.1 | CDS | 49832049 | 49832225 | 49832049 | ID=cds.MS.gene008594.t1;Parent=MS.gene008594.t1 |
| chr3.1 | exon | 49832304 | 49832390 | 49832304 | ID=MS.gene008594.t1.exon8;Parent=MS.gene008594.t1 |
| chr3.1 | CDS | 49832304 | 49832390 | 49832304 | ID=cds.MS.gene008594.t1;Parent=MS.gene008594.t1 |
| chr3.1 | exon | 49832492 | 49832554 | 49832492 | ID=MS.gene008594.t1.exon9;Parent=MS.gene008594.t1 |
| chr3.1 | CDS | 49832492 | 49832554 | 49832492 | ID=cds.MS.gene008594.t1;Parent=MS.gene008594.t1 |
| Gene Sequence |
| Protein sequence |
