Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008791.t1 | XP_003628976.1 | 92.2 | 462 | 32 | 2 | 1 | 459 | 1 | 461 | 2.00E-241 | 844.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008791.t1 | Q94JZ8 | 55.1 | 474 | 192 | 6 | 1 | 459 | 1 | 468 | 2.4e-134 | 480.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008791.t1 | G7L735 | 92.2 | 462 | 32 | 2 | 1 | 459 | 1 | 461 | 1.4e-241 | 844.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene008791 | MS.gene035055 | PPI |
MS.gene029804 | MS.gene008791 | PPI |
MS.gene064475 | MS.gene008791 | PPI |
MS.gene051468 | MS.gene008791 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008791.t1 | MTR_8g070760 | 95.887 | 462 | 15 | 2 | 1 | 459 | 1 | 461 | 0.0 | 911 |
MS.gene008791.t1 | MTR_4g006310 | 57.143 | 364 | 63 | 8 | 1 | 359 | 1 | 276 | 3.70e-118 | 347 |
MS.gene008791.t1 | MTR_4g006220 | 69.636 | 247 | 65 | 6 | 120 | 363 | 60 | 299 | 3.39e-111 | 330 |
MS.gene008791.t1 | MTR_4g006220 | 66.923 | 260 | 65 | 6 | 120 | 363 | 60 | 314 | 9.06e-111 | 330 |
MS.gene008791.t1 | MTR_4g006220 | 72.821 | 195 | 45 | 5 | 120 | 311 | 60 | 249 | 2.96e-92 | 280 |
MS.gene008791.t1 | MTR_4g011870 | 62.871 | 202 | 72 | 1 | 112 | 310 | 49 | 250 | 2.86e-85 | 265 |
MS.gene008791.t1 | MTR_4g011870 | 81.818 | 55 | 10 | 0 | 405 | 459 | 267 | 321 | 3.65e-22 | 97.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008791.t1 | AT1G14570 | 59.290 | 479 | 164 | 9 | 1 | 459 | 1 | 468 | 0.0 | 539 |
MS.gene008791.t1 | AT1G14570 | 59.290 | 479 | 164 | 9 | 1 | 459 | 1 | 468 | 0.0 | 539 |
MS.gene008791.t1 | AT1G14570 | 56.994 | 479 | 154 | 11 | 1 | 459 | 1 | 447 | 5.54e-176 | 501 |
MS.gene008791.t1 | AT1G14570 | 56.994 | 479 | 154 | 11 | 1 | 459 | 1 | 447 | 5.54e-176 | 501 |
MS.gene008791.t1 | AT4G14250 | 35.983 | 478 | 190 | 14 | 1 | 459 | 1 | 381 | 1.19e-81 | 257 |
MS.gene008791.t1 | AT4G14245 | 42.284 | 324 | 149 | 7 | 170 | 459 | 25 | 344 | 5.44e-80 | 252 |
MS.gene008791.t1 | AT1G59550 | 32.281 | 285 | 135 | 5 | 178 | 459 | 78 | 307 | 1.27e-41 | 150 |
MS.gene008791.t1 | AT3G23605 | 54.082 | 98 | 40 | 2 | 366 | 458 | 54 | 151 | 4.86e-30 | 114 |
Find 131 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCCCCAGGCGCGCATCTTT+TGG | 0.197961 | 8.1:-34370112 | None:intergenic |
ATTGCATGAGTTAATTTAAA+TGG | 0.222294 | 8.1:-34371445 | None:intergenic |
CTTACGCTCTGAACCAATTC+AGG | 0.260804 | 8.1:+34370858 | MS.gene008791:CDS |
AAACAAGGCGTCCAGGGGTT+TGG | 0.265242 | 8.1:+34366241 | MS.gene008791:CDS |
CTTTCAGCCTTAGGTTCTTC+AGG | 0.299255 | 8.1:-34370775 | None:intergenic |
ACAATGTTTGTTACCTGAAT+TGG | 0.303161 | 8.1:-34370871 | None:intergenic |
AAATTAACTCATGCAATTCC+TGG | 0.309836 | 8.1:+34371451 | MS.gene008791:CDS |
AACAAGGCGTCCAGGGGTTT+GGG | 0.315966 | 8.1:+34366242 | MS.gene008791:CDS |
CGGAACGCAATTAAGGAGTT+TGG | 0.344818 | 8.1:-34366204 | None:intergenic |
TCAAAACAAACTTCATATTC+TGG | 0.353771 | 8.1:+34368710 | MS.gene008791:CDS |
TAAAGAGTTTCCCTTCTAAC+AGG | 0.358554 | 8.1:-34365270 | None:intergenic |
AGCAACAAACCTTTAGGCTT+TGG | 0.363839 | 8.1:-34370384 | None:intergenic |
AGTTCAACATTTGAGGAATC+AGG | 0.365918 | 8.1:+34371502 | MS.gene008791:CDS |
TGAAATTTCAATGGAAGGAT+TGG | 0.372183 | 8.1:+34364412 | None:intergenic |
CAGAGTTGGTGTACGACTTC+CGG | 0.373761 | 8.1:+34370810 | MS.gene008791:CDS |
AAGAGATTTCTTTCAGCCTT+AGG | 0.374090 | 8.1:-34370784 | None:intergenic |
CACCGCTAGACAATTCCTTC+AGG | 0.375539 | 8.1:+34364502 | MS.gene008791:CDS |
CATTCATTGCTGTTCAGCTC+GGG | 0.378444 | 8.1:+34371407 | MS.gene008791:CDS |
CTGGCCAAAAGATGCGCGCC+TGG | 0.383774 | 8.1:+34370108 | MS.gene008791:CDS |
TGCGTTCCGTAACTTTGAAC+AGG | 0.387019 | 8.1:+34366218 | MS.gene008791:CDS |
GCGCTCCTTTACCTGTTAGA+AGG | 0.395890 | 8.1:+34365259 | MS.gene008791:CDS |
TGAAACTAGTTCAACATTTG+AGG | 0.400584 | 8.1:+34371495 | MS.gene008791:CDS |
TATGATAATGTACTGCTGTA+TGG | 0.405741 | 8.1:+34365291 | MS.gene008791:CDS |
CGCTGAACACGGCGTCCATC+CGG | 0.409761 | 8.1:-34370829 | None:intergenic |
GTAGAGGCGGCACCTTGCTC+TGG | 0.411725 | 8.1:-34366267 | None:intergenic |
GTCTAGCGGTGGCAGCGGTT+TGG | 0.411971 | 8.1:-34364490 | None:intergenic |
GTTGTATACATACTTCTAAT+AGG | 0.412430 | 8.1:-34370154 | None:intergenic |
AAAGTTACGGAACGCAATTA+AGG | 0.412740 | 8.1:-34366211 | None:intergenic |
TTGTTTCCTGTTCAAAGTTA+CGG | 0.416439 | 8.1:-34366224 | None:intergenic |
CTTTAGAGAATGCTGATGCT+TGG | 0.421399 | 8.1:+34364764 | MS.gene008791:CDS |
CATGTTTGTGCAGAGGATCA+AGG | 0.432283 | 8.1:+34366160 | MS.gene008791:intron |
CTGCTACCATTCTTTGATGC+TGG | 0.434193 | 8.1:+34370303 | MS.gene008791:CDS |
CCAGTGAACATTAGATGAAA+AGG | 0.437470 | 8.1:-34366333 | None:intergenic |
AACTGGGGCGGTGCCAGTGC+CGG | 0.438456 | 8.1:+34364720 | MS.gene008791:CDS |
TTTAGAGAATGCTGATGCTT+GGG | 0.439197 | 8.1:+34364765 | MS.gene008791:CDS |
AAGGGCGCTGGCAGCTTCGT+TGG | 0.446600 | 8.1:+34370642 | MS.gene008791:CDS |
TCATTCATTGCTGTTCAGCT+CGG | 0.448382 | 8.1:+34371406 | MS.gene008791:CDS |
GATAAAGATGCAAATGTTGC+TGG | 0.448803 | 8.1:+34370703 | MS.gene008791:CDS |
TTAAGGAGTTTGGTTCTTGT+GGG | 0.448936 | 8.1:-34366194 | None:intergenic |
TGGCCAAAAGATGCGCGCCT+GGG | 0.455165 | 8.1:+34370109 | MS.gene008791:CDS |
CATACTTCTAATAGGCTGTC+AGG | 0.460925 | 8.1:-34370146 | None:intergenic |
GGATCAATAATAAGCACAAC+AGG | 0.462840 | 8.1:-34370080 | None:intergenic |
CAAGGAATTCAGCTCACATA+TGG | 0.464307 | 8.1:+34368557 | MS.gene008791:CDS |
CGTGAAAGAATCAAGTGAAA+TGG | 0.464552 | 8.1:+34370669 | MS.gene008791:CDS |
AAGGTATTGTGATGATCCTT+AGG | 0.466920 | 8.1:-34370327 | None:intergenic |
CAAAGTGGTGGAATTAATGA+TGG | 0.467579 | 8.1:+34365225 | MS.gene008791:CDS |
TCAGGCAAGGTTGGATAAGC+AGG | 0.467613 | 8.1:-34370757 | None:intergenic |
TTGAACTAGTTTCATAGTCC+AGG | 0.468112 | 8.1:-34371486 | None:intergenic |
ATTCTTTGATGCTGGTCCTA+AGG | 0.469975 | 8.1:+34370311 | MS.gene008791:CDS |
AGGAGGATGAGGAGGTTCAA+AGG | 0.472645 | 8.1:+34370623 | MS.gene008791:CDS |
TCAATTGAAATTTCAATGGA+AGG | 0.473002 | 8.1:+34364407 | None:intergenic |
CAAAGCTTAATCGAGATACA+TGG | 0.476057 | 8.1:+34368662 | MS.gene008791:intron |
AAAGACGCTGGCGCCGGCAC+TGG | 0.476874 | 8.1:-34364733 | None:intergenic |
AACAAACCTTTAGGCTTTGG+TGG | 0.477017 | 8.1:-34370381 | None:intergenic |
GAACAGGAAACAAGGCGTCC+AGG | 0.482355 | 8.1:+34366234 | MS.gene008791:CDS |
AGCCTTAGGTTCTTCAGGCA+AGG | 0.486746 | 8.1:-34370770 | None:intergenic |
CTCTATGATTTCAGTGACTT+GGG | 0.488098 | 8.1:+34371534 | MS.gene008791:CDS |
ATTAAGGAGTTTGGTTCTTG+TGG | 0.489335 | 8.1:-34366195 | None:intergenic |
CTTATTATTGATCCCATCAC+TGG | 0.490898 | 8.1:+34370089 | MS.gene008791:CDS |
ACTCTATGATTTCAGTGACT+TGG | 0.492097 | 8.1:+34371533 | MS.gene008791:CDS |
GTTTCCCTTCTAACAGGTAA+AGG | 0.493946 | 8.1:-34365264 | None:intergenic |
TGCTCTGGTTCCCAAACCCC+TGG | 0.494800 | 8.1:-34366252 | None:intergenic |
AACAGGAAACAAGGCGTCCA+GGG | 0.496463 | 8.1:+34366235 | MS.gene008791:CDS |
TTAGGTTCTTCAGGCAAGGT+TGG | 0.498747 | 8.1:-34370766 | None:intergenic |
TCTAGCCCACCAAAGCCTAA+AGG | 0.506708 | 8.1:+34370375 | MS.gene008791:CDS |
AGGTTGAACCATTCCTCCCC+AGG | 0.507251 | 8.1:-34370126 | None:intergenic |
TCGAGATACATGGGCAAATG+AGG | 0.507934 | 8.1:+34368672 | MS.gene008791:CDS |
ATAAGCAGGCCTTTGTGCTA+AGG | 0.508207 | 8.1:-34370743 | None:intergenic |
CTCTACAGCAGAAAGTTCTC+AGG | 0.509338 | 8.1:+34366284 | MS.gene008791:CDS |
GGAGGATGAGGAGGTTCAAA+GGG | 0.515759 | 8.1:+34370624 | MS.gene008791:CDS |
TGCGAATAAAGAGGAGGATG+AGG | 0.517963 | 8.1:+34370612 | MS.gene008791:CDS |
AGAAATCTCTTATGCAGAGT+TGG | 0.519501 | 8.1:+34370796 | MS.gene008791:CDS |
CATATGTGAGCTGAATTCCT+TGG | 0.521363 | 8.1:-34368556 | None:intergenic |
CGCTCCTTTACCTGTTAGAA+GGG | 0.524315 | 8.1:+34365260 | MS.gene008791:CDS |
AACAAACTTCATATTCTGGC+AGG | 0.524553 | 8.1:+34368714 | MS.gene008791:CDS |
ATGATAATGTACTGCTGTAT+GGG | 0.528780 | 8.1:+34365292 | MS.gene008791:CDS |
AACCTTGCCTGAAGAACCTA+AGG | 0.529993 | 8.1:+34370768 | MS.gene008791:CDS |
CTGAGAACTTTCTGCTGTAG+AGG | 0.534565 | 8.1:-34366283 | None:intergenic |
TTTGGCCTTGAGCAACTTCG+AGG | 0.538324 | 8.1:-34364472 | None:intergenic |
CAAGCATCAGCATTCTCTAA+AGG | 0.539462 | 8.1:-34364763 | None:intergenic |
TATGCAGGACAAGTGGTTGA+TGG | 0.539644 | 8.1:+34368518 | MS.gene008791:CDS |
TCCTTCCTCGAAGTTGCTCA+AGG | 0.542813 | 8.1:+34364467 | MS.gene008791:CDS |
GATGCGCGCCTGGGGAGGAA+TGG | 0.542893 | 8.1:+34370118 | MS.gene008791:CDS |
CAAAAGATGCGCGCCTGGGG+AGG | 0.548291 | 8.1:+34370113 | MS.gene008791:CDS |
GGCCAAAAGATGCGCGCCTG+GGG | 0.558084 | 8.1:+34370110 | MS.gene008791:CDS |
GGAGTGAAAGACGCTGGCGC+CGG | 0.561147 | 8.1:-34364739 | None:intergenic |
TGAGGAGGTTCAAAGGGCGC+TGG | 0.563022 | 8.1:+34370630 | MS.gene008791:CDS |
ACAAACCTTTAGGCTTTGGT+GGG | 0.566721 | 8.1:-34370380 | None:intergenic |
TTAGGACCAGCATCAAAGAA+TGG | 0.572322 | 8.1:-34370309 | None:intergenic |
CTGAAATCATAGAGTTGGCA+AGG | 0.576183 | 8.1:-34371525 | None:intergenic |
AGTCACTGAAATCATAGAGT+TGG | 0.576250 | 8.1:-34371530 | None:intergenic |
TTGTGCAGAGGATCAAGGCT+TGG | 0.576548 | 8.1:+34366165 | MS.gene008791:intron |
GCCTTGAGCAACTTCGAGGA+AGG | 0.577295 | 8.1:-34364468 | None:intergenic |
GAATTGTCTAGCGGTGGCAG+CGG | 0.578146 | 8.1:-34364495 | None:intergenic |
GGTGGGCTAGAACTTCCTCT+AGG | 0.578823 | 8.1:-34370363 | None:intergenic |
GGGTTGATCAGTCTCATATG+AGG | 0.590026 | 8.1:+34364785 | MS.gene008791:CDS |
GGCTACAAGTTGGAAACTTG+AGG | 0.590970 | 8.1:+34364666 | MS.gene008791:intron |
GAATCAAGTGAAATGGCTGA+AGG | 0.593507 | 8.1:+34370676 | MS.gene008791:CDS |
ATTCATTGCTGTTCAGCTCG+GGG | 0.595345 | 8.1:+34371408 | MS.gene008791:CDS |
ACCAATGTTTGTTGATCCGT+GGG | 0.597691 | 8.1:-34364440 | None:intergenic |
GGAAGGATTGGTATCTCCCA+CGG | 0.599495 | 8.1:+34364424 | MS.gene008791:CDS |
GTGAACATTAGATGAAAAGG+AGG | 0.600701 | 8.1:-34366330 | None:intergenic |
GACCAATGTTTGTTGATCCG+TGG | 0.603135 | 8.1:-34364441 | None:intergenic |
GTAAGAAGTTTCGCTGAACA+CGG | 0.610559 | 8.1:-34370840 | None:intergenic |
AGATTCAGATGCGAATAAAG+AGG | 0.610807 | 8.1:+34370603 | MS.gene008791:intron |
TCTAGGACGCTTGTGAGACA+AGG | 0.622243 | 8.1:-34370346 | None:intergenic |
GGGGTTTGGGAACCAGAGCA+AGG | 0.625497 | 8.1:+34366255 | MS.gene008791:CDS |
CTGAAGGAATTGTCTAGCGG+TGG | 0.628338 | 8.1:-34364501 | None:intergenic |
AGAACTTTCTGCTGTAGAGG+CGG | 0.629726 | 8.1:-34366280 | None:intergenic |
CTGCTGCTATGCAGGACAAG+TGG | 0.631272 | 8.1:+34368511 | MS.gene008791:CDS |
GTTGGTGTACGACTTCCGGA+TGG | 0.637393 | 8.1:+34370814 | MS.gene008791:CDS |
TTGTCTCACAAGCGTCCTAG+AGG | 0.638401 | 8.1:+34370348 | MS.gene008791:CDS |
AAGAAACAGCCTTAGCACAA+AGG | 0.642047 | 8.1:+34370734 | MS.gene008791:CDS |
GCATCAGCATTCTCTAAAGG+CGG | 0.646871 | 8.1:-34364760 | None:intergenic |
TCCCACGGATCAACAAACAT+TGG | 0.646991 | 8.1:+34364439 | MS.gene008791:CDS |
TTCAGATGCGAATAAAGAGG+AGG | 0.652042 | 8.1:+34370606 | MS.gene008791:CDS |
GTGATTGTTGTAGTGAAACA+AGG | 0.653689 | 8.1:+34365187 | MS.gene008791:intron |
ACGGATACTGCGAATCAAAG+TGG | 0.656788 | 8.1:+34365210 | MS.gene008791:CDS |
AAAGGCGGAGTGAAAGACGC+TGG | 0.658169 | 8.1:-34364745 | None:intergenic |
ACAGGAAACAAGGCGTCCAG+GGG | 0.660485 | 8.1:+34366236 | MS.gene008791:CDS |
GTAACTTTGAACAGGAAACA+AGG | 0.663273 | 8.1:+34366226 | MS.gene008791:CDS |
AAAGCTTAATCGAGATACAT+GGG | 0.664178 | 8.1:+34368663 | MS.gene008791:intron |
GATACTGCGAATCAAAGTGG+TGG | 0.665827 | 8.1:+34365213 | MS.gene008791:CDS |
GAATAAAGAGGAGGATGAGG+AGG | 0.665942 | 8.1:+34370615 | MS.gene008791:CDS |
GGTGAACATACAATCTACCA+AGG | 0.683946 | 8.1:+34368539 | MS.gene008791:CDS |
TGAACATTAGATGAAAAGGA+GGG | 0.686295 | 8.1:-34366329 | None:intergenic |
TTGTTGTAGTGAAACAAGGA+CGG | 0.692263 | 8.1:+34365191 | MS.gene008791:intron |
AACCTGAAGGAATTGTCTAG+CGG | 0.693623 | 8.1:-34364504 | None:intergenic |
GATTGGAAGTGAAACTGGGG+CGG | 0.700213 | 8.1:+34364708 | MS.gene008791:CDS |
GTATATGATGATACAACTGA+AGG | 0.707733 | 8.1:+34370020 | MS.gene008791:CDS |
TTTGATTGGAAGTGAAACTG+GGG | 0.714704 | 8.1:+34364705 | MS.gene008791:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 34364422 | 34371561 | 34364422 | ID=MS.gene008791 |
chr8.1 | mRNA | 34364422 | 34371561 | 34364422 | ID=MS.gene008791.t1;Parent=MS.gene008791 |
chr8.1 | exon | 34364422 | 34364523 | 34364422 | ID=MS.gene008791.t1.exon1;Parent=MS.gene008791.t1 |
chr8.1 | CDS | 34364422 | 34364523 | 34364422 | ID=cds.MS.gene008791.t1;Parent=MS.gene008791.t1 |
chr8.1 | exon | 34364667 | 34364806 | 34364667 | ID=MS.gene008791.t1.exon2;Parent=MS.gene008791.t1 |
chr8.1 | CDS | 34364667 | 34364806 | 34364667 | ID=cds.MS.gene008791.t1;Parent=MS.gene008791.t1 |
chr8.1 | exon | 34365200 | 34365313 | 34365200 | ID=MS.gene008791.t1.exon3;Parent=MS.gene008791.t1 |
chr8.1 | CDS | 34365200 | 34365313 | 34365200 | ID=cds.MS.gene008791.t1;Parent=MS.gene008791.t1 |
chr8.1 | exon | 34366173 | 34366368 | 34366173 | ID=MS.gene008791.t1.exon4;Parent=MS.gene008791.t1 |
chr8.1 | CDS | 34366173 | 34366368 | 34366173 | ID=cds.MS.gene008791.t1;Parent=MS.gene008791.t1 |
chr8.1 | exon | 34368501 | 34368578 | 34368501 | ID=MS.gene008791.t1.exon5;Parent=MS.gene008791.t1 |
chr8.1 | CDS | 34368501 | 34368578 | 34368501 | ID=cds.MS.gene008791.t1;Parent=MS.gene008791.t1 |
chr8.1 | exon | 34368667 | 34368735 | 34368667 | ID=MS.gene008791.t1.exon6;Parent=MS.gene008791.t1 |
chr8.1 | CDS | 34368667 | 34368735 | 34368667 | ID=cds.MS.gene008791.t1;Parent=MS.gene008791.t1 |
chr8.1 | exon | 34370020 | 34370163 | 34370020 | ID=MS.gene008791.t1.exon7;Parent=MS.gene008791.t1 |
chr8.1 | CDS | 34370020 | 34370163 | 34370020 | ID=cds.MS.gene008791.t1;Parent=MS.gene008791.t1 |
chr8.1 | exon | 34370300 | 34370396 | 34370300 | ID=MS.gene008791.t1.exon8;Parent=MS.gene008791.t1 |
chr8.1 | CDS | 34370300 | 34370396 | 34370300 | ID=cds.MS.gene008791.t1;Parent=MS.gene008791.t1 |
chr8.1 | exon | 34370605 | 34370879 | 34370605 | ID=MS.gene008791.t1.exon9;Parent=MS.gene008791.t1 |
chr8.1 | CDS | 34370605 | 34370879 | 34370605 | ID=cds.MS.gene008791.t1;Parent=MS.gene008791.t1 |
chr8.1 | exon | 34371397 | 34371561 | 34371397 | ID=MS.gene008791.t1.exon10;Parent=MS.gene008791.t1 |
chr8.1 | CDS | 34371397 | 34371561 | 34371397 | ID=cds.MS.gene008791.t1;Parent=MS.gene008791.t1 |
Gene Sequence |
Protein sequence |